Miscellaneous |
Version lineage of this tool (guids ordered most recent to oldest) |
toolshed.g2.bx.psu.edu/repos/peterjc/get_orfs_or_cdss/get_orfs_or_cdss/0.1.1 |
toolshed.g2.bx.psu.edu/repos/peterjc/get_orfs_or_cdss/get_orfs_or_cdss/0.0.5 (this tool) |
toolshed.g2.bx.psu.edu/repos/peterjc/get_orfs_or_cdss/get_orfs_or_cdss/0.0.3 |
toolshed.g2.bx.psu.edu/repos/peterjc/get_orfs_or_cdss/get_orfs_or_cdss/0.0.2 |
toolshed.g2.bx.psu.edu/repos/peterjc/get_orfs_or_cdss/get_orfs_or_cdss/0.0.1 |
get_orfs_or_cdss |
Requirements (dependencies defined in the <requirements> tag set) |
name | version | type |
biopython | 1.62 | package |
Bio | not provided | python-module |
Functional tests |
name | inputs | outputs | required files |
Test-1 |
input_file: get_orf_input.fasta table: 1 ftype: CDS ends: open mode: all min_len: 10 strand: forward |
out_nuc_file: get_orf_input.t1_nuc_out.fasta out_prot_file: get_orf_input.t1_prot_out.fasta |
get_orf_input.fasta get_orf_input.t1_nuc_out.fasta get_orf_input.t1_prot_out.fasta |
Test-2 |
input_file: get_orf_input.fasta table: 11 ftype: CDS ends: closed mode: all min_len: 10 strand: forward |
out_nuc_file: get_orf_input.t11_nuc_out.fasta out_prot_file: get_orf_input.t11_prot_out.fasta |
get_orf_input.fasta get_orf_input.t11_nuc_out.fasta get_orf_input.t11_prot_out.fasta |
Test-3 |
input_file: get_orf_input.fasta table: 11 ftype: CDS ends: open mode: all min_len: 10 strand: forward |
out_nuc_file: get_orf_input.t11_open_nuc_out.fasta out_prot_file: get_orf_input.t11_open_prot_out.fasta |
get_orf_input.fasta get_orf_input.t11_open_nuc_out.fasta get_orf_input.t11_open_prot_out.fasta |
Test-4 |
input_file: Ssuis.fasta table: 11 ftype: ORF ends: open mode: all min_len: 100 strand: both |
out_nuc_file: get_orf_input.Suis_ORF.nuc.fasta out_prot_file: get_orf_input.Suis_ORF.prot.fasta |
Ssuis.fasta get_orf_input.Suis_ORF.nuc.fasta get_orf_input.Suis_ORF.prot.fasta |