| Miscellaneous |
| Version lineage of this tool (guids ordered most recent to oldest) |
| toolshed.g2.bx.psu.edu/repos/devteam/samtools_phase/samtools_phase/2.0 |
| toolshed.g2.bx.psu.edu/repos/devteam/samtools_phase/samtools_phase/1.0.0 (this tool) |
| samtools_phase |
| Requirements (dependencies defined in the <requirements> tag set) |
| name | version | type |
| samtools | 0.1.19 | package |
| Functional tests |
| name | inputs | outputs | required files |
| Test-1 |
input_bam: samtools_phase_in_1.bam option_set|option_sets: default |
phase_sets: samtools_phase_out_1_log.txt phase0: samtools_phase_out_1_phase0.bam phase1: samtools_phase_out_1_phase1.bam chimera: empty_file.bam |
samtools_phase_in_1.bam samtools_phase_out_1_log.txt samtools_phase_out_1_phase0.bam samtools_phase_out_1_phase1.bam empty_file.bam |
| Test-2 |
option_set|drop_ambiguous: True option_set|min_bq: 13 option_set|read_depth: 256 option_set|block_length: 13 option_set|option_sets: advanced option_set|min_het: 37 input_bam: samtools_phase_in_2.bam option_set|ignore_chimeras: False |
phase_sets: samtools_phase_out_2_log.txt phase0: samtools_phase_out_2_phase0.bam phase1: samtools_phase_out_2_phase1.bam chimera: empty_file.bam |
samtools_phase_in_2.bam samtools_phase_out_2_log.txt samtools_phase_out_2_phase0.bam samtools_phase_out_2_phase1.bam empty_file.bam |
| Test-3 |
option_set|drop_ambiguous: False option_set|min_bq: 13 option_set|read_depth: 256 option_set|block_length: 13 option_set|option_sets: advanced option_set|min_het: 37 input_bam: samtools_phase_in_2.bam option_set|ignore_chimeras: True |
phase_sets: samtools_phase_out_3_log.txt phase0: samtools_phase_out_3_phase0.bam phase1: samtools_phase_out_3_phase1.bam chimera: empty_file.bam |
samtools_phase_in_2.bam samtools_phase_out_3_log.txt samtools_phase_out_3_phase0.bam samtools_phase_out_3_phase1.bam empty_file.bam |