| Miscellaneous |
| Version lineage of this tool (guids ordered most recent to oldest) |
| toolshed.g2.bx.psu.edu/repos/iuc/hmmer_hmmemit/hmmer_hmmemit/3.4+galaxy0 (this tool) |
| toolshed.g2.bx.psu.edu/repos/iuc/hmmer_hmmemit/hmmer_hmmemit/3.3.2 |
| toolshed.g2.bx.psu.edu/repos/iuc/hmmer_hmmemit/hmmer_hmmemit/3.3 |
| toolshed.g2.bx.psu.edu/repos/iuc/hmmer_hmmemit/hmmer_hmmemit/3.2 |
| toolshed.g2.bx.psu.edu/repos/iuc/hmmer_hmmemit/hmmer_hmmemit/3.1b2 |
| toolshed.g2.bx.psu.edu/repos/iuc/hmmer_hmmemit/hmmer_hmmemit/0.1.0 |
| hmmer_hmmemit |
| Requirements (dependencies defined in the <requirements> tag set) |
| name | version | type |
| hmmer | 3.4 | package |
| Additional information about this tool |
hmmemit
#if $oformat.oformat_select == "fasta":
-N $oformat.N_fa
#elif $oformat.oformat_select == "aln":
-N $oformat.N_aln
-a
#elif $oformat.oformat_select == "mrcs":
-c
#elif $oformat.oformat_select == "mrcsf":
--minl $oformat.minl
--minu $oformat.minu
-C
#else:
-N $oformat.N_smp
-p
#if str($oformat.L):
-L $oformat.L
#end if
$oformat.emission_profiles
#end if
--seed $seed
'$hmmfile'
> '$output'
| Functional tests |
| name | inputs | outputs | required files |
| Test-1 |
hmmfile: globins4.hmm oformat|N_aln: 10 oformat|oformat_select: aln seed: 4 |
name: value |
globins4.hmm value |
| Test-2 |
hmmfile: globins4.hmm oformat|oformat_select: fasta seed: 4 |
name: value |
globins4.hmm value |