Repository revision
3:ef11139d4545

Repository 'pileup_interval'
hg clone https://toolshed.g2.bx.psu.edu/repos/devteam/pileup_interval

Pileup-to-Interval tool metadata
Miscellaneous
condenses pileup format into ranges of bases
pileup_interval
toolshed.g2.bx.psu.edu/repos/devteam/pileup_interval/pileup_interval/1.0.2
1.0.2
None
True
Version lineage of this tool (guids ordered most recent to oldest)
toolshed.g2.bx.psu.edu/repos/devteam/pileup_interval/pileup_interval/1.0.3
toolshed.g2.bx.psu.edu/repos/devteam/pileup_interval/pileup_interval/1.0.2 (this tool)
toolshed.g2.bx.psu.edu/repos/devteam/pileup_interval/pileup_interval/1.0.1
toolshed.g2.bx.psu.edu/repos/devteam/pileup_interval/pileup_interval/1.0.0
pileup_interval
Requirements (dependencies defined in the <requirements> tag set)
No requirements defined
Functional tests
name inputs outputs required files
Test-1 input: pileup_interval_in1.tabular
format_type|format: six
coverage: 3
output: pileup_interval_out1.tabular
pileup_interval_in1.tabular
pileup_interval_out1.tabular
Test-2 input: pileup_interval_in2.tabular
format_type|which_base: first
format_type|format: ten
coverage: 3
output: pileup_interval_out2.tabular
pileup_interval_in2.tabular
pileup_interval_out2.tabular
Test-3 format_type|seq_column: 1
format_type|loc_column: 2
format_type|format: manual
format_type|cvrg_column: 8
coverage: 3
input: pileup_interval_in2.tabular
format_type|base_column: 3
output: pileup_interval_out2.tabular
pileup_interval_in2.tabular
pileup_interval_out2.tabular