| Miscellaneous |
| Version lineage of this tool (guids ordered most recent to oldest) |
| toolshed.g2.bx.psu.edu/repos/nml/spades/spades/3.11.1 |
| toolshed.g2.bx.psu.edu/repos/nml/spades/spades/3.9.0 (this tool) |
| toolshed.g2.bx.psu.edu/repos/nml/spades/spades/1.4 |
| toolshed.g2.bx.psu.edu/repos/nml/spades/spades/1.3.2 |
| toolshed.g2.bx.psu.edu/repos/nml/spades/spades/1.3.1 |
| toolshed.g2.bx.psu.edu/repos/nml/spades/spades/1.2 |
| spades |
| Requirements (dependencies defined in the <requirements> tag set) |
| name | version | type |
| spades | 3.9.0 | package |
| Functional tests |
| name | inputs | outputs | required files |
| Test-1 |
kmer_choice|kmers: 33 libraries_0|files_0|file_type|rev_reads: ecoli_1K_2.fq libraries_0|lib_type: paired_end sc: False careful: False libraries_0|files_0|file_type|fwd_reads: ecoli_1K_1.fq |
out_contigs: kmer_33_output.fa out_contig_stats: None |
ecoli_1K_1.fq ecoli_1K_2.fq kmer_33_output.fa |
| Test-2 |
libraries_0|files_0|file_type|rev_reads: ecoli_1K_2.fq libraries_0|lib_type: paired_end sc: False careful: False libraries_0|files_0|file_type|fwd_reads: ecoli_1K_1.fq kmer_choice|auto_kmer_choice: True |
out_contigs: auto_kmer_output.fa |
ecoli_1K_1.fq ecoli_1K_2.fq auto_kmer_output.fa |
| Test-3 |
kmer_choice|kmers: 77 libraries_0|files_0|file_type|rev_reads: ecoli_1K_2.fq libraries_0|lib_type: paired_end sc: False careful: False libraries_0|files_0|file_type|fwd_reads: ecoli_1K_1.fq |
out_contigs: kmer_77_output.fa |
ecoli_1K_1.fq ecoli_1K_2.fq kmer_77_output.fa |