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Repository revision

Revision: 5:1a83f5ab9e95

Repository 'seq_select_by_id'

Clone this repository: hg clone https://toolshed.g2.bx.psu.edu/repos/peterjc/seq_select_by_id

Select sequences by ID tool metadata

Miscellaneous

Name: Select sequences by ID

Description: from a tabular file

Id: seq_select_by_id

Guid: toolshed.g2.bx.psu.edu/repos/peterjc/seq_select_by_id/seq_select_by_id/0.0.6

Version: 0.0.6

Version command string: python /var/opt/galaxy/g2cmnty/galaxy_toolshed/database/community_files/000/repo_42/tools/seq_select_by_id/seq_select_by_id.py --version

Display in tool panel: True

Version lineage of this tool (guids ordered most recent to oldest)

toolshed.g2.bx.psu.edu/repos/peterjc/seq_select_by_id/seq_select_by_id/0.0.11

toolshed.g2.bx.psu.edu/repos/peterjc/seq_select_by_id/seq_select_by_id/0.0.6 (this tool)

toolshed.g2.bx.psu.edu/repos/peterjc/seq_select_by_id/seq_select_by_id/0.0.4

toolshed.g2.bx.psu.edu/repos/peterjc/seq_select_by_id/seq_select_by_id/0.0.3

toolshed.g2.bx.psu.edu/repos/peterjc/seq_select_by_id/seq_select_by_id/0.0.1

seq_select_by_id

Requirements (dependencies defined in the <requirements> tag set)

Requirements:

name

version

type

biopython

1.62

package

Bio

not provided

python-module

Functional tests

name

inputs

outputs

required files

Test-1

input_file: k12_ten_proteins.fasta
input_tabular: k12_hypothetical.tabular
column: 1

output_file: k12_hypothetical.fasta

k12_ten_proteins.fasta
k12_hypothetical.tabular
k12_hypothetical.fasta