| Miscellaneous |
| Version lineage of this tool (guids ordered most recent to oldest) |
| toolshed.g2.bx.psu.edu/repos/devteam/cufflinks/cufflinks/2.2.1.0 |
| toolshed.g2.bx.psu.edu/repos/devteam/cufflinks/cufflinks/0.0.7 (this tool) |
| toolshed.g2.bx.psu.edu/repos/devteam/cufflinks/cufflinks/0.0.6 |
| toolshed.g2.bx.psu.edu/repos/devteam/cufflinks/cufflinks/0.0.7 (this tool) |
| toolshed.g2.bx.psu.edu/repos/devteam/cufflinks/cufflinks/0.0.6 |
| cufflinks |
| Requirements (dependencies defined in the <requirements> tag set) |
| name | version | type |
| cufflinks | 2.1.1 | package |
| Functional tests |
| name | inputs | outputs | required files |
| Test-1 |
min_isoform_fraction: 0.05 bias_correction|do_bias_correction: No multiread_correct: No pre_mrna_fraction: 0.05 effective_length_correction: max_intron_len: 300000 input: cufflinks_in.bam reference_annotation|use_ref: No do_normalization: No |
genes_expression: cufflinks_out3.fpkm_tracking transcripts_expression: cufflinks_out2.fpkm_tracking assembled_isoforms: cufflinks_out1.gtf global_model: cufflinks_out4.txt |
cufflinks_in.bam cufflinks_out3.fpkm_tracking cufflinks_out2.fpkm_tracking cufflinks_out1.gtf cufflinks_out4.txt |