| Miscellaneous |
| Version lineage of this tool (guids ordered most recent to oldest) |
| toolshed.g2.bx.psu.edu/repos/bgruening/hicup_deduplicator/hicup_deduplicator/0.5.10.0 |
| toolshed.g2.bx.psu.edu/repos/bgruening/hicup_deduplicator/hicup_deduplicator/0.1.0 (this tool) |
| hicup_deduplicator |
| Requirements (dependencies defined in the <requirements> tag set) |
| name | version | type |
| hicup | 0.5.9 | package |
| bowtie2 | 2.2.6 | package |
| samtools | 1.2 | package |
| docutils | 0.13.1 | package |
| Functional tests |
| name | inputs | outputs | required files |
| Test-1 |
input_file: dataset.filt.sam |
dataset_hicup: dataset.hicup.sam cis_trans_piechart: deduplicator_cis_trans_piechart.svg uniques_barchart: deduplicator_uniques_barchart.svg hicup_deduplicator_summary: hicup_deduplicator_summary.txt |
dataset.filt.sam dataset.hicup.sam deduplicator_cis_trans_piechart.svg deduplicator_uniques_barchart.svg hicup_deduplicator_summary.txt |