Repository revision
3:e1398f2ba9fe

Repository 'seq_rename'
hg clone https://toolshed.g2.bx.psu.edu/repos/peterjc/seq_rename

Rename sequences tool metadata
Miscellaneous
with ID mapping from a tabular file
seq_rename
toolshed.g2.bx.psu.edu/repos/peterjc/seq_rename/seq_rename/0.0.8
0.0.8
python /srv/toolshed/main/var/data/repos/000/repo_41/tools/seq_rename/seq_rename.py --version
True
Version lineage of this tool (guids ordered most recent to oldest)
toolshed.g2.bx.psu.edu/repos/peterjc/seq_rename/seq_rename/0.0.8 (this tool)
toolshed.g2.bx.psu.edu/repos/peterjc/seq_rename/seq_rename/0.0.4
toolshed.g2.bx.psu.edu/repos/peterjc/seq_rename/seq_rename/0.0.2
toolshed.g2.bx.psu.edu/repos/peterjc/seq_rename/seq_rename/0.0.1
seq_rename
Requirements (dependencies defined in the <requirements> tag set)
name version type
galaxy_sequence_utils 1.0.1 package
biopython 1.67 package
Bio not provided python-module
Functional tests
name inputs outputs required files
Test-1 new_column: 2
input_tabular: four_human_proteins.rename.tabular
old_column: 1
input_file: four_human_proteins.fasta
output_file: four_human_proteins.rename.fasta
four_human_proteins.fasta
four_human_proteins.rename.tabular
four_human_proteins.rename.fasta
Test-2 new_column: c2
input_tabular: four_human_proteins.rename.tabular
old_column: c1
input_file: four_human_proteins.fasta
output_file: four_human_proteins.rename.fasta
four_human_proteins.fasta
four_human_proteins.rename.tabular
four_human_proteins.rename.fasta