Repository revision
2:7c0642fc57ad

Repository 'seq_rename'
hg clone https://toolshed.g2.bx.psu.edu/repos/peterjc/seq_rename

Rename sequences tool metadata
Miscellaneous
with ID mapping from a tabular file
seq_rename
toolshed.g2.bx.psu.edu/repos/peterjc/seq_rename/seq_rename/0.0.4
0.0.4
None
True
Version lineage of this tool (guids ordered most recent to oldest)
toolshed.g2.bx.psu.edu/repos/peterjc/seq_rename/seq_rename/0.0.8
toolshed.g2.bx.psu.edu/repos/peterjc/seq_rename/seq_rename/0.0.4 (this tool)
toolshed.g2.bx.psu.edu/repos/peterjc/seq_rename/seq_rename/0.0.2
toolshed.g2.bx.psu.edu/repos/peterjc/seq_rename/seq_rename/0.0.1
seq_rename
Requirements (dependencies defined in the <requirements> tag set)
name version type
biopython 1.62 package
Bio not provided python-module
Functional tests
name inputs outputs required files
Test-1 input_file: four_human_proteins.fasta
input_tabular: four_human_proteins.rename.tabular
old_column: 1
new_column: 2
output_file: four_human_proteins.rename.fasta
four_human_proteins.fasta
four_human_proteins.rename.tabular
four_human_proteins.rename.fasta
Test-2 input_file: four_human_proteins.fasta
input_tabular: four_human_proteins.rename.tabular
old_column: c1
new_column: c2
output_file: four_human_proteins.rename.fasta
four_human_proteins.fasta
four_human_proteins.rename.tabular
four_human_proteins.rename.fasta