Miscellaneous |
Version lineage of this tool (guids ordered most recent to oldest) |
toolshed.g2.bx.psu.edu/repos/bgruening/deeptools_bam_coverage/deeptools_bam_coverage/2.5.1.0.0 |
toolshed.g2.bx.psu.edu/repos/bgruening/deeptools_bam_coverage/deeptools_bam_coverage/2.5.0.0 (this tool) |
toolshed.g2.bx.psu.edu/repos/bgruening/deeptools_bam_coverage/deeptools_bam_coverage/2.4.2.0 |
toolshed.g2.bx.psu.edu/repos/bgruening/deeptools_bam_coverage/deeptools_bam_coverage/2.4.1.0 |
toolshed.g2.bx.psu.edu/repos/bgruening/deeptools_bam_coverage/deeptools_bam_coverage/2.3.6.0 |
toolshed.g2.bx.psu.edu/repos/bgruening/deeptools_bam_coverage/deeptools_bam_coverage/2.3.5.0 |
toolshed.g2.bx.psu.edu/repos/bgruening/deeptools_bam_coverage/deeptools_bam_coverage/2.2.3.0 |
toolshed.g2.bx.psu.edu/repos/bgruening/deeptools_bam_coverage/deeptools_bam_coverage/2.2.2.0 |
toolshed.g2.bx.psu.edu/repos/bgruening/deeptools_bam_coverage/deeptools_bam_coverage/2.1.0.0 |
toolshed.g2.bx.psu.edu/repos/bgruening/deeptools_bam_coverage/deeptools_bam_coverage/2.0.1.0 |
deeptools_bam_coverage |
Requirements (dependencies defined in the <requirements> tag set) |
name | version | type |
python | 2.7.10 | package |
deeptools | 2.5.0 | package |
Functional tests |
name | inputs | outputs | required files |
Test-1 |
advancedOpt|showAdvancedOpt: no bamInput: bowtie2 test1.bam scaling|type: no outFileFormat: bigwig binSize: 10 |
outFileName: bamCoverage_result1.bw |
bowtie2 test1.bam bamCoverage_result1.bw |
Test-2 |
bamInput: bowtie2 test1.bam advancedOpt|showAdvancedOpt: no outFileFormat: bigwig binSize: 10 |
outFileName: bamCoverage_result2.bw |
bowtie2 test1.bam bamCoverage_result2.bw |
Test-3 |
bamInput: bowtie2 test1.bam advancedOpt|showAdvancedOpt: no outFileFormat: bedgraph binSize: 10 |
outFileName: bamCoverage_result3.bg |
bowtie2 test1.bam bamCoverage_result3.bg |
Test-4 |
bamInput: phiX.bam advancedOpt|showAdvancedOpt: no outFileFormat: bigwig binSize: 10 |
outFileName: bamCoverage_result4.bw |
phiX.bam bamCoverage_result4.bw |
Test-5 |
bamInput: phiX.bam advancedOpt|showAdvancedOpt: yes outFileFormat: bedgraph binSize: 10 |
outFileName: bamCoverage_result4.bg |
phiX.bam bamCoverage_result4.bg |
Test-6 |
advancedOpt|showAdvancedOpt: yes bamInput: phiX.bam advancedOpt|filterRNAstrand: reverse outFileFormat: bigwig binSize: 10 |
outFileName: bamCoverage_result5.bw |
phiX.bam bamCoverage_result5.bw |
Test-7 |
advancedOpt|showAdvancedOpt: yes advancedOpt|Offset: -4 -1 advancedOpt|minMappingQuality: 0 outFileFormat: bigwig advancedOpt|doExtendCustom|doExtend: yes bamInput: bowtie2 test1.bam scaling|type: no binSize: 10 |
outFileName: bamCoverage_result6.bw |
bowtie2 test1.bam bamCoverage_result6.bw |