Repository revision
9:da05ce41f8f0

Repository 'mothur_get_coremicrobiome'
hg clone https://toolshed.g2.bx.psu.edu/repos/iuc/mothur_get_coremicrobiome

Get.coremicrobiome tool metadata
Miscellaneous
fraction of OTUs for samples or abundances
mothur_get_coremicrobiome
toolshed.g2.bx.psu.edu/repos/iuc/mothur_get_coremicrobiome/mothur_get_coremicrobiome/1.39.5.0
1.39.5.0
mothur "#help()" | sed '7q;d' | cut -d" " -f2
True
Version lineage of this tool (guids ordered most recent to oldest)
toolshed.g2.bx.psu.edu/repos/iuc/mothur_get_coremicrobiome/mothur_get_coremicrobiome/1.39.5.0 (this tool)
toolshed.g2.bx.psu.edu/repos/iuc/mothur_get_coremicrobiome/mothur_get_coremicrobiome/1.36.1.0
mothur_get_coremicrobiome
Requirements (dependencies defined in the <requirements> tag set)
name version type
mothur 1.39.5 package
Functional tests
name inputs outputs required files
Test-1 otu: amazon.an.shared
savelog: True
name: value
amazon.an.shared
value
Test-2 otu: amazon.an.shared
label: ['0.05', '0.22', '0.45']
abundance: 30
savelog: True
name: value
amazon.an.shared
value