Galaxy |

Chimera.uchime tool metadata

Miscellaneous

Name: Chimera.uchime

Description: Find putative chimeras using uchime

Id: mothur_chimera_uchime

Guid: toolshed.g2.bx.psu.edu/repos/iuc/mothur_chimera_uchime/mothur_chimera_uchime/1.36.1.0

Version: 1.36.1.0

Version command string: mothur "#help()" | sed '7q;d' | cut -d" " -f2

Display in tool panel: True

Version lineage of this tool (guids ordered most recent to oldest)

toolshed.g2.bx.psu.edu/repos/iuc/mothur_chimera_uchime/mothur_chimera_uchime/1.39.5.0

toolshed.g2.bx.psu.edu/repos/iuc/mothur_chimera_uchime/mothur_chimera_uchime/1.36.1.0 (this tool)

mothur_chimera_uchime

Requirements (dependencies defined in the <requirements> tag set)

Requirements:

name

version

type

mothur

1.36.1

package

Functional tests

name

inputs

outputs

required files

Test-1

fasta: Mock_S280_L001_R1_001_small.trim.contigs.good.align_head_withchimera
template|source: hist
template|reference: HMP_MOCK.v35.align

out_file: Mock_S280_L001_R1_001_small.trim.contigs.good.ref.uchime.chimeras
out_accnos: Mock_S280_L001_R1_001_small.trim.contigs.good.ref.uchime.accnos
logfile: None

Mock_S280_L001_R1_001_small.trim.contigs.good.align_head_withchimera
HMP_MOCK.v35.align
Mock_S280_L001_R1_001_small.trim.contigs.good.ref.uchime.chimeras
Mock_S280_L001_R1_001_small.trim.contigs.good.ref.uchime.accnos

Test-2

fasta: Mock_S280_L001_R1_001_small.trim.contigs.good.align_head
template|source: self

out_file: Mock_S280_L001_R1_001_small.trim.contigs.good.denovo.uchime.chimeras
out_accnos: None
logfile: None

Mock_S280_L001_R1_001_small.trim.contigs.good.align_head
Mock_S280_L001_R1_001_small.trim.contigs.good.denovo.uchime.chimeras

Test-3

fasta: Mock_S280_L001_R1_001_small.trim.contigs.good.align_head_withchimera
chimealns: True
template|source: hist
template|reference: HMP_MOCK.v35.align

out_file: Mock_S280_L001_R1_001_small.trim.contigs.good.ref.uchime.chimeras
out_accnos: Mock_S280_L001_R1_001_small.trim.contigs.good.ref.uchime.accnos
out_alns: Mock_S280_L001_R1_001_small.trim.contigs.good.ref.uchime.alns
logfile: None