Repository revision
1:b61f1466ce8f

Repository 'fastq_mcf'
hg clone https://toolshed.g2.bx.psu.edu/repos/jjohnson/fastq_mcf

FastqMcf tool metadata
Miscellaneous
FastqMcf
sequence quality filtering and clipping
fastq_mcf
toolshed.g2.bx.psu.edu/repos/jjohnson/fastq_mcf/fastq_mcf/1.0
1.0
None
True
Version lineage of this tool (guids ordered most recent to oldest)
toolshed.g2.bx.psu.edu/repos/jjohnson/fastq_mcf/fastq_mcf/1.0 (this tool)
fastq_mcf
Requirements (dependencies defined in the <requirements> tag set)
name version type
ea-utils 1.1.2-484 package
Functional tests
name inputs outputs required files
Test-1 adpaters: adapters.fa
reads: test_mcf_reads.fq
mates: test_mcf_mates.fq
choice: user_set
nkeep: 16
qthr: 15
qwin: 5
pctns: 10
ilv3: u
phred: 33
reads_out: testout_mcf_reads.fq
mates_out: testout_mcf_mates.fq
adapters.fa
test_mcf_reads.fq
test_mcf_mates.fq
testout_mcf_reads.fq
testout_mcf_mates.fq