| Miscellaneous |
| Version lineage of this tool (guids ordered most recent to oldest) |
| toolshed.g2.bx.psu.edu/repos/devteam/samtools_bedcov/samtools_bedcov/2.0.4 |
| toolshed.g2.bx.psu.edu/repos/devteam/samtools_bedcov/samtools_bedcov/2.0.3 (this tool) |
| toolshed.g2.bx.psu.edu/repos/devteam/samtools_bedcov/samtools_bedcov/2.0.2 |
| toolshed.g2.bx.psu.edu/repos/devteam/samtools_bedcov/samtools_bedcov/2.0.1 |
| toolshed.g2.bx.psu.edu/repos/devteam/samtools_bedcov/samtools_bedcov/2.0 |
| toolshed.g2.bx.psu.edu/repos/devteam/samtools_bedcov/samtools_bedcov/1.0.1 |
| samtools_bedcov |
| Requirements (dependencies defined in the <requirements> tag set) |
| name | version | type |
| samtools | 1.13 | package |
| Functional tests |
| name | inputs | outputs | required files |
| Test-1 |
input_bed: eboVir3.1.bed input_bams: eboVir3.bam |
name: value |
eboVir3.1.bed eboVir3.bam value |
| Test-2 |
input_bed: eboVir3.1.bed input_bams: ['eboVir3.bam', 'eboVir3.2.bam'] |
name: value |
eboVir3.1.bed eboVir3.bam eboVir3.2.bam value |
| Test-3 |
input_bed: eboVir3.1.bed input_bams: eboVir3.bam mapq: 40 |
name: value |
eboVir3.1.bed eboVir3.bam value |
| Test-4 |
input_bed: eboVir3.1.bed input_bams: ['eboVir3.bam', 'eboVir3.2.bam'] countdel: True |
name: value |
eboVir3.1.bed eboVir3.bam eboVir3.2.bam value |
| Test-5 |
input_bed: eboVir3.1.bed input_bams: eboVir3.bam additional_options|required_flags: ['2', '16', '64'] |
name: value |
eboVir3.1.bed eboVir3.bam value |
| Test-6 |
input_bed: eboVir3.1.bed input_bams: eboVir3.bam additional_options|skipped_flags: ['2', '16', '64'] |
name: value |
eboVir3.1.bed eboVir3.bam value |
| Test-7 |
input_bed: eboVir3.1.bed input_bams: eboVir3.bam depth_thresh: 10 |
name: value |
eboVir3.1.bed eboVir3.bam value |