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plotPCA tool metadata

Miscellaneous

Name: plotPCA

Description: Generate principal component analysis (PCA) plots from multiBamSummary or multiBigwigSummary output

Id: deeptools_plot_pca

Guid: toolshed.g2.bx.psu.edu/repos/bgruening/deeptools_plot_pca/deeptools_plot_pca/3.0.2.0

Version: 3.0.2.0

Version command string: plotPCA --version

Display in tool panel: True

Version lineage of this tool (guids ordered most recent to oldest)

toolshed.g2.bx.psu.edu/repos/bgruening/deeptools_plot_pca/deeptools_plot_pca/3.1.0.0

toolshed.g2.bx.psu.edu/repos/bgruening/deeptools_plot_pca/deeptools_plot_pca/3.0.2.0 (this tool)

toolshed.g2.bx.psu.edu/repos/bgruening/deeptools_plot_pca/deeptools_plot_pca/3.0.1.0

toolshed.g2.bx.psu.edu/repos/bgruening/deeptools_plot_pca/deeptools_plot_pca/3.0.0.0

toolshed.g2.bx.psu.edu/repos/bgruening/deeptools_plot_pca/deeptools_plot_pca/2.5.7.0

toolshed.g2.bx.psu.edu/repos/bgruening/deeptools_plot_pca/deeptools_plot_pca/2.5.1.1.0

toolshed.g2.bx.psu.edu/repos/bgruening/deeptools_plot_pca/deeptools_plot_pca/2.5.1.0.0

toolshed.g2.bx.psu.edu/repos/bgruening/deeptools_plot_pca/deeptools_plot_pca/2.5.0.0

toolshed.g2.bx.psu.edu/repos/bgruening/deeptools_plot_pca/deeptools_plot_pca/2.4.2.0

toolshed.g2.bx.psu.edu/repos/bgruening/deeptools_plot_pca/deeptools_plot_pca/2.4.1.0

toolshed.g2.bx.psu.edu/repos/bgruening/deeptools_plot_pca/deeptools_plot_pca/2.3.6.0

toolshed.g2.bx.psu.edu/repos/bgruening/deeptools_plot_pca/deeptools_plot_pca/2.3.5.0

toolshed.g2.bx.psu.edu/repos/bgruening/deeptools_plot_pca/deeptools_plot_pca/2.2.3.0

toolshed.g2.bx.psu.edu/repos/bgruening/deeptools_plot_pca/deeptools_plot_pca/2.2.2.0

toolshed.g2.bx.psu.edu/repos/bgruening/deeptools_plot_pca/deeptools_plot_pca/2.1.0.0

toolshed.g2.bx.psu.edu/repos/bgruening/deeptools_plot_pca/deeptools_plot_pca/2.0.1.0

deeptools_plot_pca

Requirements (dependencies defined in the <requirements> tag set)

Requirements:

name

version

type

deeptools

3.0.2

package

samtools

1.7

package

Functional tests

name

inputs

outputs

required files

Test-1

plotTitle: Test Plot
advancedOpt|showAdvancedOpt: yes
outFileFormat: png
corData: multiBamSummary_result2b.npz

outFileName: plotPCA_result1.png

multiBamSummary_result2b.npz
plotPCA_result1.png

Test-2

outFileNameData: True
plotTitle: Test Plot
outFileFormat: png
corData: multiBamSummary_result2b.npz

outFileName: plotPCA_result2.png
output_outFileNameData: plotPCA_result2.tabular

multiBamSummary_result2b.npz
plotPCA_result2.png
plotPCA_result2.tabular