| Miscellaneous |
| Version lineage of this tool (guids ordered most recent to oldest) |
| toolshed.g2.bx.psu.edu/repos/iuc/mothur_get_lineage/mothur_get_lineage/1.39.5.0 |
| toolshed.g2.bx.psu.edu/repos/iuc/mothur_get_lineage/mothur_get_lineage/1.36.1.0 (this tool) |
| mothur_get_lineage |
| Requirements (dependencies defined in the <requirements> tag set) |
| name | version | type |
| mothur | 1.36.1 | package |
| Functional tests |
| name | inputs | outputs | required files |
| Test-1 |
file|taxonomy: abrecovery.pds.wang.taxonomy file|filetype: usetaxonomy taxon: Bacteria;Firmicutes; |
taxonomy_out: None |
abrecovery.pds.wang.taxonomy |
| Test-2 |
fasta_in: abrecovery.fasta taxon: Bacteria;Firmicutes;,Bacteria;Actinobacteria; list_in: amazon.an.list group_in: abrecovery.groups file|taxonomy: abrecovery.pds.wang.taxonomy alignreport_in: Mock_S280_L001_R1_001_small.contigs.report file|filetype: usetaxonomy name_in: abrecovery.names |
taxonomy_out: None group_out: None fasta_out: None name_out: None alignreport_out: None |
abrecovery.pds.wang.taxonomy abrecovery.fasta abrecovery.groups Mock_S280_L001_R1_001_small.contigs.report amazon.an.list abrecovery.names |
| Test-3 |
file|taxonomy: abrecovery.pds.wang.taxonomy file|taxons: ['Bacteria(100);Firmicutes(100);Clostridia(100);Clostridiales(100);Lachnospiraceae(100);Dorea(99);', 'Bacteria(100);Firmicutes(100);Clostridia(100);Clostridiales(100);Lachnospiraceae(100);Roseburia(47);'] file|filetype: usetaxonomy |
taxonomy_out: None |
abrecovery.pds.wang.taxonomy |
| Test-4 |
file|taxonomy: example.constaxonomy file|filetype: useconstaxonomy taxon: Bacteria;Bacteroidetes; |
taxonomy_out: None |
example.constaxonomy |
| Test-5 |
file|taxonomy: example.constaxonomy file|taxons: ['Bacteria(100);Firmicutes(100);Clostridia(70);Clostridiales(70);Lachnospiraceae(51);unclassified;', 'Bacteria(100);Proteobacteria(100);Gammaproteobacteria(100);unclassified;unclassified;unclassified;'] file|filetype: useconstaxonomy |
taxonomy_out: None |
example.constaxonomy |