| Miscellaneous |
| Version lineage of this tool (guids ordered most recent to oldest) |
| toolshed.g2.bx.psu.edu/repos/iuc/trinity_filter_low_expr_transcripts/trinity_filter_low_expr_transcripts/2.9.1 |
| toolshed.g2.bx.psu.edu/repos/iuc/trinity_filter_low_expr_transcripts/trinity_filter_low_expr_transcripts/2.8.5 (this tool) |
| toolshed.g2.bx.psu.edu/repos/iuc/trinity_filter_low_expr_transcripts/trinity_filter_low_expr_transcripts/2.8.4 |
| toolshed.g2.bx.psu.edu/repos/iuc/trinity_filter_low_expr_transcripts/trinity_filter_low_expr_transcripts/2.8.3 |
| toolshed.g2.bx.psu.edu/repos/iuc/trinity_filter_low_expr_transcripts/trinity_filter_low_expr_transcripts/2.6.6 |
| toolshed.g2.bx.psu.edu/repos/iuc/trinity_filter_low_expr_transcripts/trinity_filter_low_expr_transcripts/2.4.0.0 |
| toolshed.g2.bx.psu.edu/repos/iuc/trinity_filter_low_expr_transcripts/trinity_filter_low_expr_transcripts/2.2.0.1 |
| toolshed.g2.bx.psu.edu/repos/iuc/trinity_filter_low_expr_transcripts/trinity_filter_low_expr_transcripts/2.2.0.0 |
| trinity_filter_low_expr_transcripts |
| Requirements (dependencies defined in the <requirements> tag set) |
| name | version | type |
| trinity | 2.8.5 | package |
| Functional tests |
| name | inputs | outputs | required files |
| Test-1 |
isoform_filter|isoform_mode: none min_expr_any: 25 assembly: raw/Trinity.fasta matrix: filtered/counts.matrix |
attributes: name |
raw/Trinity.fasta filtered/counts.matrix name |
| Test-2 |
isoform_filter|isoform_mode: highest_iso_only assembly: raw/Trinity.fasta matrix: count/qcheck/matrix.counts.matrix |
attributes: name |
raw/Trinity.fasta count/qcheck/matrix.counts.matrix name |
| Test-3 |
isoform_filter|isoform_mode: min_pct_dom_iso assembly: raw/Trinity.fasta matrix: filtered/counts.matrix isoform_filter|min_pct_dom_iso: 20 |
attributes: name |
raw/Trinity.fasta filtered/counts.matrix name |