annotate README.md @ 3:8f34c9dfa7ea draft

"planemo upload commit 6f0636dd5ad7b6edbfc33a142d9cfd4ab9019d1e"
author aac
date Wed, 13 Jan 2021 17:44:48 +0000
parents a1267fc353f4
children
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
rev   line source
0
a1267fc353f4 "planemo upload commit 14444c0cf01771bee10424a169ab24954530350d-dirty"
aac
parents:
diff changeset
1 # iReceptor Plus Gateway Galaxy Datasource
a1267fc353f4 "planemo upload commit 14444c0cf01771bee10424a169ab24954530350d-dirty"
aac
parents:
diff changeset
2
a1267fc353f4 "planemo upload commit 14444c0cf01771bee10424a169ab24954530350d-dirty"
aac
parents:
diff changeset
3 Galaxy datasource tool for connecting a Galaxy instance to the iReceptor Plus Gateway.
a1267fc353f4 "planemo upload commit 14444c0cf01771bee10424a169ab24954530350d-dirty"
aac
parents:
diff changeset
4
a1267fc353f4 "planemo upload commit 14444c0cf01771bee10424a169ab24954530350d-dirty"
aac
parents:
diff changeset
5 ## Installation
a1267fc353f4 "planemo upload commit 14444c0cf01771bee10424a169ab24954530350d-dirty"
aac
parents:
diff changeset
6
a1267fc353f4 "planemo upload commit 14444c0cf01771bee10424a169ab24954530350d-dirty"
aac
parents:
diff changeset
7 1. Copy `irp-gateway.xml` to `galaxy-central/tools/data_source`
a1267fc353f4 "planemo upload commit 14444c0cf01771bee10424a169ab24954530350d-dirty"
aac
parents:
diff changeset
8 2. Configure `galaxy-central/config/tool_conf.xml` to include the new tool by adding `<tool file="data_source/irp-gateway.xml" />` under the `<section id="getext" name="Get Data">` tag.
a1267fc353f4 "planemo upload commit 14444c0cf01771bee10424a169ab24954530350d-dirty"
aac
parents:
diff changeset
9
a1267fc353f4 "planemo upload commit 14444c0cf01771bee10424a169ab24954530350d-dirty"
aac
parents:
diff changeset
10 Example:
a1267fc353f4 "planemo upload commit 14444c0cf01771bee10424a169ab24954530350d-dirty"
aac
parents:
diff changeset
11 ```xml
a1267fc353f4 "planemo upload commit 14444c0cf01771bee10424a169ab24954530350d-dirty"
aac
parents:
diff changeset
12 <?xml version='1.0' encoding='utf-8'?>
a1267fc353f4 "planemo upload commit 14444c0cf01771bee10424a169ab24954530350d-dirty"
aac
parents:
diff changeset
13 <toolbox monitor="true">
a1267fc353f4 "planemo upload commit 14444c0cf01771bee10424a169ab24954530350d-dirty"
aac
parents:
diff changeset
14 <section id="getext" name="Get Data">
a1267fc353f4 "planemo upload commit 14444c0cf01771bee10424a169ab24954530350d-dirty"
aac
parents:
diff changeset
15 [...]
a1267fc353f4 "planemo upload commit 14444c0cf01771bee10424a169ab24954530350d-dirty"
aac
parents:
diff changeset
16 <tool file="data_source/irp-gateway.xml" />
a1267fc353f4 "planemo upload commit 14444c0cf01771bee10424a169ab24954530350d-dirty"
aac
parents:
diff changeset
17 [...]
a1267fc353f4 "planemo upload commit 14444c0cf01771bee10424a169ab24954530350d-dirty"
aac
parents:
diff changeset
18 ```
a1267fc353f4 "planemo upload commit 14444c0cf01771bee10424a169ab24954530350d-dirty"
aac
parents:
diff changeset
19
a1267fc353f4 "planemo upload commit 14444c0cf01771bee10424a169ab24954530350d-dirty"
aac
parents:
diff changeset
20 3. Restart or reload Galaxy's instance
a1267fc353f4 "planemo upload commit 14444c0cf01771bee10424a169ab24954530350d-dirty"
aac
parents:
diff changeset
21