Mercurial > repos > aac > irp_integration

changeset 1:b25bbb79cfbf draft

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"Added explicit path to data_source.py"
author aac
date Tue, 12 Jan 2021 11:37:04 +0000
parents a1267fc353f4
children e98071230f9f
files irp-gateway.xml
diffstat 1 files changed, 1 insertions(+), 1 deletions(-) [+]
line wrap: on
line diff
--- a/irp-gateway.xml	Mon Jan 11 14:46:35 2021 +0000
+++ b/irp-gateway.xml	Tue Jan 12 11:37:04 2021 +0000
@@ -7,7 +7,7 @@
 <tool name="iReceptor Plus Gateway" id="irp-integration" tool_type="data_source" version="1.0.0">
     <description>Access the iReceptor Plus Gateway to browse AIRR-seq data.</description>
     <command><![CDATA[
-        python data_source.py '$output' $__app__.config.output_size_limit
+        python '$__root_dir__/tools/data_source/data_source.py' '$output' $__app__.config.output_size_limit
     ]]></command>
     <inputs action="https://gateway.ireceptor.org/downloads" check_values="false" method="post">
         <display>Redirected to $GALAXY_URL</display>