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comparison ITSx_db/HMMs/L.hmm @ 0:57e76d405a97 draft default tip

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date Mon, 14 Mar 2016 16:15:08 -0400
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-1:000000000000 0:57e76d405a97
1 HMMER3/b [3.0 | March 2010]
2 NAME 3_End_Marchantiophyta_58S_end_foura_long
3 LENG 45
4 ALPH DNA
5 RF no
6 CS no
7 MAP yes
8 DATE Wed Jan 25 17:48:18 2012
9 NSEQ 4
10 EFFN 3.089844
11 CKSUM 3677159024
12 STATS LOCAL MSV -8.1113 0.71933
13 STATS LOCAL VITERBI -7.8119 0.71933
14 STATS LOCAL FORWARD -3.9220 0.71933
15 HMM A C G T
16 m->m m->i m->d i->m i->i d->m d->d
17 COMPO 1.72586 1.10743 1.14821 1.74657
18 1.38629 1.38629 1.38629 1.38629
19 0.03854 3.96837 3.96837 1.46634 0.26236 0.00000 *
20 1 3.34359 0.14142 3.39674 2.76335 1 - -
21 1.38629 1.38629 1.38629 1.38629
22 0.03854 3.96837 3.96837 1.46634 0.26236 1.09861 0.40547
23 2 2.89265 3.50850 0.12621 3.40512 2 - -
24 1.38629 1.38629 1.38629 1.38629
25 0.03854 3.96837 3.96837 1.46634 0.26236 1.09861 0.40547
26 3 3.34359 0.14142 3.39674 2.76335 3 - -
27 1.38629 1.38629 1.38629 1.38629
28 0.03854 3.96837 3.96837 1.46634 0.26236 1.09861 0.40547
29 4 3.34359 0.14142 3.39674 2.76335 4 - -
30 1.38629 1.38629 1.38629 1.38629
31 0.03854 3.96837 3.96837 1.46634 0.26236 1.09861 0.40547
32 5 3.34359 0.14142 3.39674 2.76335 5 - -
33 1.38629 1.38629 1.38629 1.38629
34 0.03854 3.96837 3.96837 1.46634 0.26236 1.09861 0.40547
35 6 2.89265 3.50850 0.12621 3.40512 6 - -
36 1.38629 1.38629 1.38629 1.38629
37 0.03854 3.96837 3.96837 1.46634 0.26236 1.09861 0.40547
38 7 0.15258 3.30274 2.75126 3.19718 7 - -
39 1.38629 1.38629 1.38629 1.38629
40 0.03854 3.96837 3.96837 1.46634 0.26236 1.09861 0.40547
41 8 2.89265 3.50850 0.12621 3.40512 8 - -
42 1.38629 1.38629 1.38629 1.38629
43 0.03854 3.96837 3.96837 1.46634 0.26236 1.09861 0.40547
44 9 2.89265 3.50850 0.12621 3.40512 9 - -
45 1.38629 1.38629 1.38629 1.38629
46 0.03854 3.96837 3.96837 1.46634 0.26236 1.09861 0.40547
47 10 3.01102 2.54565 3.06211 0.19171 10 - -
48 1.38629 1.38629 1.38629 1.38629
49 0.03854 3.96837 3.96837 1.46634 0.26236 1.09861 0.40547
50 11 3.34359 0.14142 3.39674 2.76335 11 - -
51 1.38629 1.38629 1.38629 1.38629
52 0.03854 3.96837 3.96837 1.46634 0.26236 1.09861 0.40547
53 12 3.01102 2.54565 3.06211 0.19171 12 - -
54 1.38629 1.38629 1.38629 1.38629
55 0.03854 3.96837 3.96837 1.46634 0.26236 1.09861 0.40547
56 13 3.34359 0.14142 3.39674 2.76335 13 - -
57 1.38629 1.38629 1.38629 1.38629
58 0.03854 3.96837 3.96837 1.46634 0.26236 1.09861 0.40547
59 14 2.89265 3.50850 0.12621 3.40512 14 - -
60 1.38629 1.38629 1.38629 1.38629
61 0.03854 3.96837 3.96837 1.46634 0.26236 1.09861 0.40547
62 15 3.01102 2.54565 3.06211 0.19171 15 - -
63 1.38629 1.38629 1.38629 1.38629
64 0.03854 3.96837 3.96837 1.46634 0.26236 1.09861 0.40547
65 16 0.15258 3.30274 2.75126 3.19718 16 - -
66 1.38629 1.38629 1.38629 1.38629
67 0.03854 3.96837 3.96837 1.46634 0.26236 1.09861 0.40547
68 17 3.34359 0.14142 3.39674 2.76335 17 - -
69 1.38629 1.38629 1.38629 1.38629
70 0.03854 3.96837 3.96837 1.46634 0.26236 1.09861 0.40547
71 18 3.34359 0.14142 3.39674 2.76335 18 - -
72 1.38629 1.38629 1.38629 1.38629
73 0.03854 3.96837 3.96837 1.46634 0.26236 1.09861 0.40547
74 19 2.89265 3.50850 0.12621 3.40512 19 - -
75 1.38629 1.38629 1.38629 1.38629
76 0.03854 3.96837 3.96837 1.46634 0.26236 1.09861 0.40547
77 20 0.15258 3.30274 2.75126 3.19718 20 - -
78 1.38629 1.38629 1.38629 1.38629
79 0.03854 3.96837 3.96837 1.46634 0.26236 1.09861 0.40547
80 21 2.89265 3.50850 0.12621 3.40512 21 - -
81 1.38629 1.38629 1.38629 1.38629
82 0.03854 3.96837 3.96837 1.46634 0.26236 1.09861 0.40547
83 22 2.89265 3.50850 0.12621 3.40512 22 - -
84 1.38629 1.38629 1.38629 1.38629
85 0.03854 3.96837 3.96837 1.46634 0.26236 1.09861 0.40547
86 23 2.89265 3.50850 0.12621 3.40512 23 - -
87 1.38629 1.38629 1.38629 1.38629
88 0.03854 3.96837 3.96837 1.46634 0.26236 1.09861 0.40547
89 24 3.34359 0.14142 3.39674 2.76335 24 - -
90 1.38629 1.38629 1.38629 1.38629
91 0.03854 3.96837 3.96837 1.46634 0.26236 1.09861 0.40547
92 25 0.15258 3.30274 2.75126 3.19718 25 - -
93 1.38629 1.38629 1.38629 1.38629
94 0.03854 3.96837 3.96837 1.46634 0.26236 1.09861 0.40547
95 26 3.34359 0.14142 3.39674 2.76335 26 - -
96 1.38629 1.38629 1.38629 1.38629
97 0.03854 3.96837 3.96837 1.46634 0.26236 1.09861 0.40547
98 27 2.89265 3.50850 0.12621 3.40512 27 - -
99 1.38629 1.38629 1.38629 1.38629
100 0.03854 3.96837 3.96837 1.46634 0.26236 1.09861 0.40547
101 28 3.01102 2.54565 3.06211 0.19171 28 - -
102 1.38629 1.38629 1.38629 1.38629
103 0.03854 3.96837 3.96837 1.46634 0.26236 1.09861 0.40547
104 29 3.34359 0.14142 3.39674 2.76335 29 - -
105 1.38629 1.38629 1.38629 1.38629
106 0.03854 3.96837 3.96837 1.46634 0.26236 1.09861 0.40547
107 30 3.01102 2.54565 3.06211 0.19171 30 - -
108 1.38629 1.38629 1.38629 1.38629
109 0.03854 3.96837 3.96837 1.46634 0.26236 1.09861 0.40547
110 31 2.89265 3.50850 0.12621 3.40512 31 - -
111 1.38629 1.38629 1.38629 1.38629
112 0.03854 3.96837 3.96837 1.46634 0.26236 1.09861 0.40547
113 32 3.34359 0.14142 3.39674 2.76335 32 - -
114 1.38629 1.38629 1.38629 1.38629
115 0.03854 3.96837 3.96837 1.46634 0.26236 1.09861 0.40547
116 33 3.34359 0.14142 3.39674 2.76335 33 - -
117 1.38629 1.38629 1.38629 1.38629
118 0.03854 3.96837 3.96837 1.46634 0.26236 1.09861 0.40547
119 34 3.01102 2.54565 3.06211 0.19171 34 - -
120 1.38629 1.38629 1.38629 1.38629
121 0.03854 3.96837 3.96837 1.46634 0.26236 1.09861 0.40547
122 35 2.89265 3.50850 0.12621 3.40512 35 - -
123 1.38629 1.38629 1.38629 1.38629
124 0.03854 3.96837 3.96837 1.46634 0.26236 1.09861 0.40547
125 36 0.15258 3.30274 2.75126 3.19718 36 - -
126 1.38629 1.38629 1.38629 1.38629
127 0.03854 3.96837 3.96837 1.46634 0.26236 1.09861 0.40547
128 37 2.89265 3.50850 0.12621 3.40512 37 - -
129 1.38629 1.38629 1.38629 1.38629
130 0.03854 3.96837 3.96837 1.46634 0.26236 1.09861 0.40547
131 38 3.34359 0.14142 3.39674 2.76335 38 - -
132 1.38629 1.38629 1.38629 1.38629
133 0.03854 3.96837 3.96837 1.46634 0.26236 1.09861 0.40547
134 39 2.89265 3.50850 0.12621 3.40512 39 - -
135 1.38629 1.38629 1.38629 1.38629
136 0.03854 3.96837 3.96837 1.46634 0.26236 1.09861 0.40547
137 40 3.01102 2.54565 3.06211 0.19171 40 - -
138 1.38629 1.38629 1.38629 1.38629
139 0.03854 3.96837 3.96837 1.46634 0.26236 1.09861 0.40547
140 41 3.34359 0.14142 3.39674 2.76335 41 - -
141 1.38629 1.38629 1.38629 1.38629
142 0.03854 3.96837 3.96837 1.46634 0.26236 1.09861 0.40547
143 42 0.15258 3.30274 2.75126 3.19718 42 - -
144 1.38629 1.38629 1.38629 1.38629
145 0.03854 3.96837 3.96837 1.46634 0.26236 1.09861 0.40547
146 43 3.34359 0.14142 3.39674 2.76335 43 - -
147 1.38629 1.38629 1.38629 1.38629
148 0.03854 3.96837 3.96837 1.46634 0.26236 1.09861 0.40547
149 44 0.15258 3.30274 2.75126 3.19718 44 - -
150 1.38629 1.38629 1.38629 1.38629
151 0.03854 3.96837 3.96837 1.46634 0.26236 1.09861 0.40547
152 45 2.89265 3.50850 0.12621 3.40512 45 - -
153 1.38629 1.38629 1.38629 1.38629
154 0.01946 3.94929 * 1.46634 0.26236 0.00000 *
155 //
156 HMMER3/b [3.0 | March 2010]
157 NAME 3_End_Marchantiophyta_58S_end_fourb_long
158 LENG 45
159 ALPH DNA
160 RF no
161 CS no
162 MAP yes
163 DATE Wed Jan 25 17:48:24 2012
164 NSEQ 2
165 EFFN 2.000000
166 CKSUM 131491290
167 STATS LOCAL MSV -7.4968 0.72757
168 STATS LOCAL VITERBI -8.3707 0.72757
169 STATS LOCAL FORWARD -3.7471 0.72757
170 HMM A C G T
171 m->m m->i m->d i->m i->i d->m d->d
172 COMPO 1.66684 1.23957 1.21839 1.48748
173 1.38629 1.38629 1.38629 1.38629
174 0.04879 3.73767 3.73767 1.46634 0.26236 0.00000 *
175 1 2.81865 0.23582 2.88868 2.35662 1 - -
176 1.38629 1.38629 1.38629 1.38629
177 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
178 2 2.53331 3.02441 0.20344 2.88069 2 - -
179 1.38629 1.38629 1.38629 1.38629
180 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
181 3 2.81865 0.23582 2.88868 2.35662 3 - -
182 1.38629 1.38629 1.38629 1.38629
183 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
184 4 2.81865 0.23582 2.88868 2.35662 4 - -
185 1.38629 1.38629 1.38629 1.38629
186 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
187 5 2.57915 2.25909 2.64442 0.28946 5 - -
188 1.38629 1.38629 1.38629 1.38629
189 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
190 6 2.53331 3.02441 0.20344 2.88069 6 - -
191 1.38629 1.38629 1.38629 1.38629
192 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
193 7 0.23862 2.84929 2.43386 2.70756 7 - -
194 1.38629 1.38629 1.38629 1.38629
195 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
196 8 2.53331 3.02441 0.20344 2.88069 8 - -
197 1.38629 1.38629 1.38629 1.38629
198 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
199 9 2.53331 3.02441 0.20344 2.88069 9 - -
200 1.38629 1.38629 1.38629 1.38629
201 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
202 10 2.57915 2.25909 2.64442 0.28946 10 - -
203 1.38629 1.38629 1.38629 1.38629
204 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
205 11 2.81865 0.23582 2.88868 2.35662 11 - -
206 1.38629 1.38629 1.38629 1.38629
207 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
208 12 2.81865 0.23582 2.88868 2.35662 12 - -
209 1.38629 1.38629 1.38629 1.38629
210 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
211 13 2.81865 0.23582 2.88868 2.35662 13 - -
212 1.38629 1.38629 1.38629 1.38629
213 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
214 14 2.53331 3.02441 0.20344 2.88069 14 - -
215 1.38629 1.38629 1.38629 1.38629
216 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
217 15 2.57915 2.25909 2.64442 0.28946 15 - -
218 1.38629 1.38629 1.38629 1.38629
219 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
220 16 0.23862 2.84929 2.43386 2.70756 16 - -
221 1.38629 1.38629 1.38629 1.38629
222 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
223 17 2.81865 0.23582 2.88868 2.35662 17 - -
224 1.38629 1.38629 1.38629 1.38629
225 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
226 18 2.81865 0.23582 2.88868 2.35662 18 - -
227 1.38629 1.38629 1.38629 1.38629
228 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
229 19 2.53331 3.02441 0.20344 2.88069 19 - -
230 1.38629 1.38629 1.38629 1.38629
231 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
232 20 0.23862 2.84929 2.43386 2.70756 20 - -
233 1.38629 1.38629 1.38629 1.38629
234 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
235 21 0.23862 2.84929 2.43386 2.70756 21 - -
236 1.38629 1.38629 1.38629 1.38629
237 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
238 22 2.53331 3.02441 0.20344 2.88069 22 - -
239 1.38629 1.38629 1.38629 1.38629
240 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
241 23 2.53331 3.02441 0.20344 2.88069 23 - -
242 1.38629 1.38629 1.38629 1.38629
243 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
244 24 2.81865 0.23582 2.88868 2.35662 24 - -
245 1.38629 1.38629 1.38629 1.38629
246 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
247 25 0.23862 2.84929 2.43386 2.70756 25 - -
248 1.38629 1.38629 1.38629 1.38629
249 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
250 26 2.81865 0.23582 2.88868 2.35662 26 - -
251 1.38629 1.38629 1.38629 1.38629
252 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
253 27 2.53331 3.02441 0.20344 2.88069 27 - -
254 1.38629 1.38629 1.38629 1.38629
255 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
256 28 2.57915 2.25909 2.64442 0.28946 28 - -
257 1.38629 1.38629 1.38629 1.38629
258 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
259 29 2.81865 0.23582 2.88868 2.35662 29 - -
260 1.38629 1.38629 1.38629 1.38629
261 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
262 30 2.57915 2.25909 2.64442 0.28946 30 - -
263 1.38629 1.38629 1.38629 1.38629
264 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
265 31 2.53331 3.02441 0.20344 2.88069 31 - -
266 1.38629 1.38629 1.38629 1.38629
267 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
268 32 2.57915 2.25909 2.64442 0.28946 32 - -
269 1.38629 1.38629 1.38629 1.38629
270 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
271 33 2.81865 0.23582 2.88868 2.35662 33 - -
272 1.38629 1.38629 1.38629 1.38629
273 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
274 34 2.57915 2.25909 2.64442 0.28946 34 - -
275 1.38629 1.38629 1.38629 1.38629
276 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
277 35 2.53331 3.02441 0.20344 2.88069 35 - -
278 1.38629 1.38629 1.38629 1.38629
279 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
280 36 0.23862 2.84929 2.43386 2.70756 36 - -
281 1.38629 1.38629 1.38629 1.38629
282 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
283 37 2.53331 3.02441 0.20344 2.88069 37 - -
284 1.38629 1.38629 1.38629 1.38629
285 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
286 38 2.81865 0.23582 2.88868 2.35662 38 - -
287 1.38629 1.38629 1.38629 1.38629
288 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
289 39 2.53331 3.02441 0.20344 2.88069 39 - -
290 1.38629 1.38629 1.38629 1.38629
291 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
292 40 2.57915 2.25909 2.64442 0.28946 40 - -
293 1.38629 1.38629 1.38629 1.38629
294 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
295 41 2.81865 0.23582 2.88868 2.35662 41 - -
296 1.38629 1.38629 1.38629 1.38629
297 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
298 42 0.23862 2.84929 2.43386 2.70756 42 - -
299 1.38629 1.38629 1.38629 1.38629
300 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
301 43 2.57915 2.25909 2.64442 0.28946 43 - -
302 1.38629 1.38629 1.38629 1.38629
303 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
304 44 2.57915 2.25909 2.64442 0.28946 44 - -
305 1.38629 1.38629 1.38629 1.38629
306 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
307 45 2.53331 3.02441 0.20344 2.88069 45 - -
308 1.38629 1.38629 1.38629 1.38629
309 0.02469 3.71357 * 1.46634 0.26236 0.00000 *
310 //
311 HMMER3/b [3.0 | March 2010]
312 NAME 3_End_Marchantiophyta_58S_end_fourc_long
313 LENG 45
314 ALPH DNA
315 RF no
316 CS no
317 MAP yes
318 DATE Wed Jan 25 17:48:31 2012
319 NSEQ 3
320 EFFN 3.000000
321 CKSUM 1848225497
322 STATS LOCAL MSV -8.1659 0.71999
323 STATS LOCAL VITERBI -7.8126 0.71999
324 STATS LOCAL FORWARD -4.1112 0.71999
325 HMM A C G T
326 m->m m->i m->d i->m i->i d->m d->d
327 COMPO 1.72006 1.20903 1.20251 1.50499
328 1.38629 1.38629 1.38629 1.38629
329 0.03922 3.95124 3.95124 1.46634 0.26236 0.00000 *
330 1 3.30705 0.14631 3.36166 2.73626 1 - -
331 1.38629 1.38629 1.38629 1.38629
332 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
333 2 2.86982 3.47591 0.13017 3.36931 2 - -
334 1.38629 1.38629 1.38629 1.38629
335 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
336 3 3.30705 0.14631 3.36166 2.73626 3 - -
337 1.38629 1.38629 1.38629 1.38629
338 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
339 4 3.30705 0.14631 3.36166 2.73626 4 - -
340 1.38629 1.38629 1.38629 1.38629
341 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
342 5 2.97980 2.52563 3.03204 0.19727 5 - -
343 1.38629 1.38629 1.38629 1.38629
344 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
345 6 2.86982 3.47591 0.13017 3.36931 6 - -
346 1.38629 1.38629 1.38629 1.38629
347 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
348 7 0.15719 3.27118 2.73043 3.16274 7 - -
349 1.38629 1.38629 1.38629 1.38629
350 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
351 8 2.86982 3.47591 0.13017 3.36931 8 - -
352 1.38629 1.38629 1.38629 1.38629
353 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
354 9 2.86982 3.47591 0.13017 3.36931 9 - -
355 1.38629 1.38629 1.38629 1.38629
356 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
357 10 2.97980 2.52563 3.03204 0.19727 10 - -
358 1.38629 1.38629 1.38629 1.38629
359 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
360 11 3.30705 0.14631 3.36166 2.73626 11 - -
361 1.38629 1.38629 1.38629 1.38629
362 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
363 12 2.97980 2.52563 3.03204 0.19727 12 - -
364 1.38629 1.38629 1.38629 1.38629
365 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
366 13 3.30705 0.14631 3.36166 2.73626 13 - -
367 1.38629 1.38629 1.38629 1.38629
368 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
369 14 2.86982 3.47591 0.13017 3.36931 14 - -
370 1.38629 1.38629 1.38629 1.38629
371 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
372 15 2.97980 2.52563 3.03204 0.19727 15 - -
373 1.38629 1.38629 1.38629 1.38629
374 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
375 16 0.15719 3.27118 2.73043 3.16274 16 - -
376 1.38629 1.38629 1.38629 1.38629
377 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
378 17 3.30705 0.14631 3.36166 2.73626 17 - -
379 1.38629 1.38629 1.38629 1.38629
380 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
381 18 3.30705 0.14631 3.36166 2.73626 18 - -
382 1.38629 1.38629 1.38629 1.38629
383 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
384 19 2.86982 3.47591 0.13017 3.36931 19 - -
385 1.38629 1.38629 1.38629 1.38629
386 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
387 20 0.15719 3.27118 2.73043 3.16274 20 - -
388 1.38629 1.38629 1.38629 1.38629
389 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
390 21 0.15719 3.27118 2.73043 3.16274 21 - -
391 1.38629 1.38629 1.38629 1.38629
392 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
393 22 2.86982 3.47591 0.13017 3.36931 22 - -
394 1.38629 1.38629 1.38629 1.38629
395 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
396 23 2.86982 3.47591 0.13017 3.36931 23 - -
397 1.38629 1.38629 1.38629 1.38629
398 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
399 24 3.30705 0.14631 3.36166 2.73626 24 - -
400 1.38629 1.38629 1.38629 1.38629
401 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
402 25 0.15719 3.27118 2.73043 3.16274 25 - -
403 1.38629 1.38629 1.38629 1.38629
404 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
405 26 3.30705 0.14631 3.36166 2.73626 26 - -
406 1.38629 1.38629 1.38629 1.38629
407 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
408 27 2.86982 3.47591 0.13017 3.36931 27 - -
409 1.38629 1.38629 1.38629 1.38629
410 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
411 28 2.97980 2.52563 3.03204 0.19727 28 - -
412 1.38629 1.38629 1.38629 1.38629
413 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
414 29 3.30705 0.14631 3.36166 2.73626 29 - -
415 1.38629 1.38629 1.38629 1.38629
416 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
417 30 2.97980 2.52563 3.03204 0.19727 30 - -
418 1.38629 1.38629 1.38629 1.38629
419 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
420 31 2.86982 3.47591 0.13017 3.36931 31 - -
421 1.38629 1.38629 1.38629 1.38629
422 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
423 32 2.97980 2.52563 3.03204 0.19727 32 - -
424 1.38629 1.38629 1.38629 1.38629
425 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
426 33 3.30705 0.14631 3.36166 2.73626 33 - -
427 1.38629 1.38629 1.38629 1.38629
428 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
429 34 2.97980 2.52563 3.03204 0.19727 34 - -
430 1.38629 1.38629 1.38629 1.38629
431 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
432 35 2.86982 3.47591 0.13017 3.36931 35 - -
433 1.38629 1.38629 1.38629 1.38629
434 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
435 36 0.15719 3.27118 2.73043 3.16274 36 - -
436 1.38629 1.38629 1.38629 1.38629
437 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
438 37 2.86982 3.47591 0.13017 3.36931 37 - -
439 1.38629 1.38629 1.38629 1.38629
440 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
441 38 3.30705 0.14631 3.36166 2.73626 38 - -
442 1.38629 1.38629 1.38629 1.38629
443 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
444 39 2.86982 3.47591 0.13017 3.36931 39 - -
445 1.38629 1.38629 1.38629 1.38629
446 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
447 40 2.97980 2.52563 3.03204 0.19727 40 - -
448 1.38629 1.38629 1.38629 1.38629
449 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
450 41 3.30705 0.14631 3.36166 2.73626 41 - -
451 1.38629 1.38629 1.38629 1.38629
452 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
453 42 0.15719 3.27118 2.73043 3.16274 42 - -
454 1.38629 1.38629 1.38629 1.38629
455 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
456 43 3.30705 0.14631 3.36166 2.73626 43 - -
457 1.38629 1.38629 1.38629 1.38629
458 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
459 44 2.97980 2.52563 3.03204 0.19727 44 - -
460 1.38629 1.38629 1.38629 1.38629
461 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
462 45 2.86982 3.47591 0.13017 3.36931 45 - -
463 1.38629 1.38629 1.38629 1.38629
464 0.01980 3.93183 * 1.46634 0.26236 0.00000 *
465 //
466 HMMER3/b [3.0 | March 2010]
467 NAME 3_End_Marchantiophyta_58S_end_one_long
468 LENG 45
469 ALPH DNA
470 RF no
471 CS no
472 MAP yes
473 DATE Wed Jan 25 17:33:59 2012
474 NSEQ 2
475 EFFN 2.000000
476 CKSUM 2649339398
477 STATS LOCAL MSV -7.6624 0.72818
478 STATS LOCAL VITERBI -8.3675 0.72818
479 STATS LOCAL FORWARD -3.1512 0.72818
480 HMM A C G T
481 m->m m->i m->d i->m i->i d->m d->d
482 COMPO 1.82330 1.26894 1.16757 1.40139
483 1.38629 1.38629 1.38629 1.38629
484 0.04879 3.73767 3.73767 1.46634 0.26236 0.00000 *
485 1 2.57915 2.25909 2.64442 0.28946 1 - -
486 1.38629 1.38629 1.38629 1.38629
487 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
488 2 2.53331 3.02441 0.20344 2.88069 2 - -
489 1.38629 1.38629 1.38629 1.38629
490 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
491 3 2.81865 0.23582 2.88868 2.35662 3 - -
492 1.38629 1.38629 1.38629 1.38629
493 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
494 4 2.53331 3.02441 0.20344 2.88069 4 - -
495 1.38629 1.38629 1.38629 1.38629
496 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
497 5 2.81865 0.23582 2.88868 2.35662 5 - -
498 1.38629 1.38629 1.38629 1.38629
499 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
500 6 2.81865 0.23582 2.88868 2.35662 6 - -
501 1.38629 1.38629 1.38629 1.38629
502 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
503 7 2.81865 0.23582 2.88868 2.35662 7 - -
504 1.38629 1.38629 1.38629 1.38629
505 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
506 8 2.53331 3.02441 0.20344 2.88069 8 - -
507 1.38629 1.38629 1.38629 1.38629
508 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
509 9 0.23862 2.84929 2.43386 2.70756 9 - -
510 1.38629 1.38629 1.38629 1.38629
511 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
512 10 2.53331 3.02441 0.20344 2.88069 10 - -
513 1.38629 1.38629 1.38629 1.38629
514 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
515 11 2.53331 3.02441 0.20344 2.88069 11 - -
516 1.38629 1.38629 1.38629 1.38629
517 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
518 12 2.57915 2.25909 2.64442 0.28946 12 - -
519 1.38629 1.38629 1.38629 1.38629
520 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
521 13 2.57915 2.25909 2.64442 0.28946 13 - -
522 1.38629 1.38629 1.38629 1.38629
523 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
524 14 2.57915 2.25909 2.64442 0.28946 14 - -
525 1.38629 1.38629 1.38629 1.38629
526 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
527 15 2.57915 2.25909 2.64442 0.28946 15 - -
528 1.38629 1.38629 1.38629 1.38629
529 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
530 16 2.57915 2.25909 2.64442 0.28946 16 - -
531 1.38629 1.38629 1.38629 1.38629
532 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
533 17 2.81865 0.23582 2.88868 2.35662 17 - -
534 1.38629 1.38629 1.38629 1.38629
535 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
536 18 2.81865 0.23582 2.88868 2.35662 18 - -
537 1.38629 1.38629 1.38629 1.38629
538 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
539 19 2.53331 3.02441 0.20344 2.88069 19 - -
540 1.38629 1.38629 1.38629 1.38629
541 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
542 20 0.23862 2.84929 2.43386 2.70756 20 - -
543 1.38629 1.38629 1.38629 1.38629
544 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
545 21 2.53331 3.02441 0.20344 2.88069 21 - -
546 1.38629 1.38629 1.38629 1.38629
547 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
548 22 2.53331 3.02441 0.20344 2.88069 22 - -
549 1.38629 1.38629 1.38629 1.38629
550 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
551 23 2.53331 3.02441 0.20344 2.88069 23 - -
552 1.38629 1.38629 1.38629 1.38629
553 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
554 24 2.81865 0.23582 2.88868 2.35662 24 - -
555 1.38629 1.38629 1.38629 1.38629
556 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
557 25 0.23862 2.84929 2.43386 2.70756 25 - -
558 1.38629 1.38629 1.38629 1.38629
559 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
560 26 2.57915 2.25909 2.64442 0.28946 26 - -
561 1.38629 1.38629 1.38629 1.38629
562 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
563 27 2.53331 3.02441 0.20344 2.88069 27 - -
564 1.38629 1.38629 1.38629 1.38629
565 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
566 28 2.57915 2.25909 2.64442 0.28946 28 - -
567 1.38629 1.38629 1.38629 1.38629
568 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
569 29 2.81865 0.23582 2.88868 2.35662 29 - -
570 1.38629 1.38629 1.38629 1.38629
571 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
572 30 2.57915 2.25909 2.64442 0.28946 30 - -
573 1.38629 1.38629 1.38629 1.38629
574 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
575 31 2.53331 3.02441 0.20344 2.88069 31 - -
576 1.38629 1.38629 1.38629 1.38629
577 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
578 32 2.15554 1.00938 2.23102 0.88601 32 - -
579 1.38629 1.38629 1.38629 1.38629
580 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
581 33 2.81865 0.23582 2.88868 2.35662 33 - -
582 1.38629 1.38629 1.38629 1.38629
583 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
584 34 2.57915 2.25909 2.64442 0.28946 34 - -
585 1.38629 1.38629 1.38629 1.38629
586 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
587 35 2.53331 3.02441 0.20344 2.88069 35 - -
588 1.38629 1.38629 1.38629 1.38629
589 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
590 36 0.23862 2.84929 2.43386 2.70756 36 - -
591 1.38629 1.38629 1.38629 1.38629
592 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
593 37 2.53331 3.02441 0.20344 2.88069 37 - -
594 1.38629 1.38629 1.38629 1.38629
595 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
596 38 2.81865 0.23582 2.88868 2.35662 38 - -
597 1.38629 1.38629 1.38629 1.38629
598 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
599 39 2.53331 3.02441 0.20344 2.88069 39 - -
600 1.38629 1.38629 1.38629 1.38629
601 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
602 40 2.57915 2.25909 2.64442 0.28946 40 - -
603 1.38629 1.38629 1.38629 1.38629
604 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
605 41 2.81865 0.23582 2.88868 2.35662 41 - -
606 1.38629 1.38629 1.38629 1.38629
607 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
608 42 0.23862 2.84929 2.43386 2.70756 42 - -
609 1.38629 1.38629 1.38629 1.38629
610 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
611 43 2.81865 0.23582 2.88868 2.35662 43 - -
612 1.38629 1.38629 1.38629 1.38629
613 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
614 44 2.81865 0.23582 2.88868 2.35662 44 - -
615 1.38629 1.38629 1.38629 1.38629
616 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
617 45 2.53331 3.02441 0.20344 2.88069 45 - -
618 1.38629 1.38629 1.38629 1.38629
619 0.02469 3.71357 * 1.46634 0.26236 0.00000 *
620 //
621 HMMER3/b [3.0 | March 2010]
622 NAME 3_End_Marchantiophyta_58S_end_three_long
623 LENG 45
624 ALPH DNA
625 RF no
626 CS no
627 MAP yes
628 DATE Wed Jan 25 17:46:07 2012
629 NSEQ 9
630 EFFN 3.062988
631 CKSUM 1860575478
632 STATS LOCAL MSV -8.2074 0.71931
633 STATS LOCAL VITERBI -7.8383 0.71931
634 STATS LOCAL FORWARD -3.6122 0.71931
635 HMM A C G T
636 m->m m->i m->d i->m i->i d->m d->d
637 COMPO 1.82320 1.06212 1.09674 1.84004
638 1.38629 1.38629 1.38629 1.38629
639 0.03874 3.96328 3.96328 1.46634 0.26236 0.00000 *
640 1 2.88593 3.49888 0.12737 3.39454 1 - -
641 1.38629 1.38629 1.38629 1.38629
642 0.03874 3.96328 3.96328 1.46634 0.26236 1.09861 0.40547
643 2 3.33278 0.14284 3.38637 2.75536 2 - -
644 1.38629 1.38629 1.38629 1.38629
645 0.03874 3.96328 3.96328 1.46634 0.26236 1.09861 0.40547
646 3 2.88593 3.49888 0.12737 3.39454 3 - -
647 1.38629 1.38629 1.38629 1.38629
648 0.03874 3.96328 3.96328 1.46634 0.26236 1.09861 0.40547
649 4 3.33278 0.14284 3.38637 2.75536 4 - -
650 1.38629 1.38629 1.38629 1.38629
651 0.03874 3.96328 3.96328 1.46634 0.26236 1.09861 0.40547
652 5 3.33278 0.14284 3.38637 2.75536 5 - -
653 1.38629 1.38629 1.38629 1.38629
654 0.03874 3.96328 3.96328 1.46634 0.26236 1.09861 0.40547
655 6 3.33278 0.14284 3.38637 2.75536 6 - -
656 1.38629 1.38629 1.38629 1.38629
657 0.03874 3.96328 3.96328 1.46634 0.26236 1.09861 0.40547
658 7 2.88593 3.49888 0.12737 3.39454 7 - -
659 1.38629 1.38629 1.38629 1.38629
660 0.03874 3.96328 3.96328 1.46634 0.26236 1.09861 0.40547
661 8 0.15393 3.29341 2.74511 3.18699 8 - -
662 1.38629 1.38629 1.38629 1.38629
663 0.03874 3.96328 3.96328 1.46634 0.26236 1.09861 0.40547
664 9 2.88593 3.49888 0.12737 3.39454 9 - -
665 1.38629 1.38629 1.38629 1.38629
666 0.03874 3.96328 3.96328 1.46634 0.26236 1.09861 0.40547
667 10 2.88593 3.49888 0.12737 3.39454 10 - -
668 1.38629 1.38629 1.38629 1.38629
669 0.03874 3.96328 3.96328 1.46634 0.26236 1.09861 0.40547
670 11 3.00176 2.53972 3.05320 0.19334 11 - -
671 1.38629 1.38629 1.38629 1.38629
672 0.03874 3.96328 3.96328 1.46634 0.26236 1.09861 0.40547
673 12 3.00176 2.53972 3.05320 0.19334 12 - -
674 1.38629 1.38629 1.38629 1.38629
675 0.03874 3.96328 3.96328 1.46634 0.26236 1.09861 0.40547
676 13 3.33278 0.14284 3.38637 2.75536 13 - -
677 1.38629 1.38629 1.38629 1.38629
678 0.03874 3.96328 3.96328 1.46634 0.26236 1.09861 0.40547
679 14 0.15393 3.29341 2.74511 3.18699 14 - -
680 1.38629 1.38629 1.38629 1.38629
681 0.03874 3.96328 3.96328 1.46634 0.26236 1.09861 0.40547
682 15 3.33278 0.14284 3.38637 2.75536 15 - -
683 1.38629 1.38629 1.38629 1.38629
684 0.03874 3.96328 3.96328 1.46634 0.26236 1.09861 0.40547
685 16 2.88593 3.49888 0.12737 3.39454 16 - -
686 1.38629 1.38629 1.38629 1.38629
687 0.03874 3.96328 3.96328 1.46634 0.26236 1.09861 0.40547
688 17 3.33278 0.14284 3.38637 2.75536 17 - -
689 1.38629 1.38629 1.38629 1.38629
690 0.03874 3.96328 3.96328 1.46634 0.26236 1.09861 0.40547
691 18 3.33278 0.14284 3.38637 2.75536 18 - -
692 1.38629 1.38629 1.38629 1.38629
693 0.03874 3.96328 3.96328 1.46634 0.26236 1.09861 0.40547
694 19 2.88593 3.49888 0.12737 3.39454 19 - -
695 1.38629 1.38629 1.38629 1.38629
696 0.03874 3.96328 3.96328 1.46634 0.26236 1.09861 0.40547
697 20 0.15393 3.29341 2.74511 3.18699 20 - -
698 1.38629 1.38629 1.38629 1.38629
699 0.03874 3.96328 3.96328 1.46634 0.26236 1.09861 0.40547
700 21 2.88593 3.49888 0.12737 3.39454 21 - -
701 1.38629 1.38629 1.38629 1.38629
702 0.03874 3.96328 3.96328 1.46634 0.26236 1.09861 0.40547
703 22 2.88593 3.49888 0.12737 3.39454 22 - -
704 1.38629 1.38629 1.38629 1.38629
705 0.03874 3.96328 3.96328 1.46634 0.26236 1.09861 0.40547
706 23 2.88593 3.49888 0.12737 3.39454 23 - -
707 1.38629 1.38629 1.38629 1.38629
708 0.03874 3.96328 3.96328 1.46634 0.26236 1.09861 0.40547
709 24 3.33278 0.14284 3.38637 2.75536 24 - -
710 1.38629 1.38629 1.38629 1.38629
711 0.03874 3.96328 3.96328 1.46634 0.26236 1.09861 0.40547
712 25 0.15393 3.29341 2.74511 3.18699 25 - -
713 1.38629 1.38629 1.38629 1.38629
714 0.03874 3.96328 3.96328 1.46634 0.26236 1.09861 0.40547
715 26 3.33278 0.14284 3.38637 2.75536 26 - -
716 1.38629 1.38629 1.38629 1.38629
717 0.03874 3.96328 3.96328 1.46634 0.26236 1.09861 0.40547
718 27 2.88593 3.49888 0.12737 3.39454 27 - -
719 1.38629 1.38629 1.38629 1.38629
720 0.03874 3.96328 3.96328 1.46634 0.26236 1.09861 0.40547
721 28 3.00176 2.53972 3.05320 0.19334 28 - -
722 1.38629 1.38629 1.38629 1.38629
723 0.03874 3.96328 3.96328 1.46634 0.26236 1.09861 0.40547
724 29 3.33278 0.14284 3.38637 2.75536 29 - -
725 1.38629 1.38629 1.38629 1.38629
726 0.03874 3.96328 3.96328 1.46634 0.26236 1.09861 0.40547
727 30 3.00176 2.53972 3.05320 0.19334 30 - -
728 1.38629 1.38629 1.38629 1.38629
729 0.03874 3.96328 3.96328 1.46634 0.26236 1.09861 0.40547
730 31 2.88593 3.49888 0.12737 3.39454 31 - -
731 1.38629 1.38629 1.38629 1.38629
732 0.03874 3.96328 3.96328 1.46634 0.26236 1.09861 0.40547
733 32 3.33278 0.14284 3.38637 2.75536 32 - -
734 1.38629 1.38629 1.38629 1.38629
735 0.03874 3.96328 3.96328 1.46634 0.26236 1.09861 0.40547
736 33 3.33278 0.14284 3.38637 2.75536 33 - -
737 1.38629 1.38629 1.38629 1.38629
738 0.03874 3.96328 3.96328 1.46634 0.26236 1.09861 0.40547
739 34 3.00176 2.53972 3.05320 0.19334 34 - -
740 1.38629 1.38629 1.38629 1.38629
741 0.03874 3.96328 3.96328 1.46634 0.26236 1.09861 0.40547
742 35 2.88593 3.49888 0.12737 3.39454 35 - -
743 1.38629 1.38629 1.38629 1.38629
744 0.03874 3.96328 3.96328 1.46634 0.26236 1.09861 0.40547
745 36 0.15393 3.29341 2.74511 3.18699 36 - -
746 1.38629 1.38629 1.38629 1.38629
747 0.03874 3.96328 3.96328 1.46634 0.26236 1.09861 0.40547
748 37 2.88593 3.49888 0.12737 3.39454 37 - -
749 1.38629 1.38629 1.38629 1.38629
750 0.03874 3.96328 3.96328 1.46634 0.26236 1.09861 0.40547
751 38 3.33278 0.14284 3.38637 2.75536 38 - -
752 1.38629 1.38629 1.38629 1.38629
753 0.03874 3.96328 3.96328 1.46634 0.26236 1.09861 0.40547
754 39 2.88593 3.49888 0.12737 3.39454 39 - -
755 1.38629 1.38629 1.38629 1.38629
756 0.03874 3.96328 3.96328 1.46634 0.26236 1.09861 0.40547
757 40 3.00176 2.53972 3.05320 0.19334 40 - -
758 1.38629 1.38629 1.38629 1.38629
759 0.03874 3.96328 3.96328 1.46634 0.26236 1.09861 0.40547
760 41 3.33278 0.14284 3.38637 2.75536 41 - -
761 1.38629 1.38629 1.38629 1.38629
762 0.03874 3.96328 3.96328 1.46634 0.26236 1.09861 0.40547
763 42 0.15393 3.29341 2.74511 3.18699 42 - -
764 1.38629 1.38629 1.38629 1.38629
765 0.03874 3.96328 3.96328 1.46634 0.26236 1.09861 0.40547
766 43 3.33278 0.14284 3.38637 2.75536 43 - -
767 1.38629 1.38629 1.38629 1.38629
768 0.03874 3.96328 3.96328 1.46634 0.26236 1.09861 0.40547
769 44 3.33278 0.14284 3.38637 2.75536 44 - -
770 1.38629 1.38629 1.38629 1.38629
771 0.03874 3.96328 3.96328 1.46634 0.26236 1.09861 0.40547
772 45 2.88593 3.49888 0.12737 3.39454 45 - -
773 1.38629 1.38629 1.38629 1.38629
774 0.01956 3.94410 * 1.46634 0.26236 0.00000 *
775 //
776 HMMER3/b [3.0 | March 2010]
777 NAME 3_End_Marchantiophyta_58S_end_twoa_long
778 LENG 45
779 ALPH DNA
780 RF no
781 CS no
782 MAP yes
783 DATE Wed Jan 25 17:34:25 2012
784 NSEQ 63
785 EFFN 3.541443
786 CKSUM 483320876
787 STATS LOCAL MSV -7.4302 0.71932
788 STATS LOCAL VITERBI -7.8320 0.71932
789 STATS LOCAL FORWARD -3.9705 0.71932
790 HMM A C G T
791 m->m m->i m->d i->m i->i d->m d->d
792 COMPO 2.03893 1.09040 1.11844 1.57522
793 1.38629 1.38629 1.38629 1.38629
794 0.03546 4.05030 4.05030 1.46634 0.26236 0.00000 *
795 1 3.15732 2.63877 3.20283 0.16799 1 - -
796 1.38629 1.38629 1.38629 1.38629
797 0.03546 4.05030 4.05030 1.46634 0.26236 1.09861 0.40547
798 2 2.99408 3.65584 0.10998 3.56768 2 - -
799 1.38629 1.38629 1.38629 1.38629
800 0.03546 4.05030 4.05030 1.46634 0.26236 1.09861 0.40547
801 3 3.31573 0.16407 3.36836 2.51866 3 - -
802 1.38629 1.38629 1.38629 1.38629
803 0.03546 4.05030 4.05030 1.46634 0.26236 1.09861 0.40547
804 4 2.99408 3.65584 0.10998 3.56768 4 - -
805 1.38629 1.38629 1.38629 1.38629
806 0.03546 4.05030 4.05030 1.46634 0.26236 1.09861 0.40547
807 5 3.51077 0.12132 3.55687 2.88519 5 - -
808 1.38629 1.38629 1.38629 1.38629
809 0.03546 4.05030 4.05030 1.46634 0.26236 1.09861 0.40547
810 6 3.51077 0.12132 3.55687 2.88519 6 - -
811 1.38629 1.38629 1.38629 1.38629
812 0.03546 4.05030 4.05030 1.46634 0.26236 1.09861 0.40547
813 7 3.51077 0.12132 3.55687 2.88519 7 - -
814 1.38629 1.38629 1.38629 1.38629
815 0.03546 4.05030 4.05030 1.46634 0.26236 1.09861 0.40547
816 8 2.64517 3.49052 0.14516 3.39211 8 - -
817 1.38629 1.38629 1.38629 1.38629
818 0.03546 4.05030 4.05030 1.46634 0.26236 1.09861 0.40547
819 9 0.13329 3.44781 2.84562 3.35595 9 - -
820 1.38629 1.38629 1.38629 1.38629
821 0.03546 4.05030 4.05030 1.46634 0.26236 1.09861 0.40547
822 10 2.99408 3.65584 0.10998 3.56768 10 - -
823 1.38629 1.38629 1.38629 1.38629
824 0.03546 4.05030 4.05030 1.46634 0.26236 1.09861 0.40547
825 11 2.99408 3.65584 0.10998 3.56768 11 - -
826 1.38629 1.38629 1.38629 1.38629
827 0.03546 4.05030 4.05030 1.46634 0.26236 1.09861 0.40547
828 12 3.51077 0.12132 3.55687 2.88519 12 - -
829 1.38629 1.38629 1.38629 1.38629
830 0.03546 4.05030 4.05030 1.46634 0.26236 1.09861 0.40547
831 13 3.15732 2.63877 3.20283 0.16799 13 - -
832 1.38629 1.38629 1.38629 1.38629
833 0.03546 4.05030 4.05030 1.46634 0.26236 1.09861 0.40547
834 14 3.36077 0.15337 3.41187 2.59697 14 - -
835 1.38629 1.38629 1.38629 1.38629
836 0.03546 4.05030 4.05030 1.46634 0.26236 1.09861 0.40547
837 15 2.99408 3.65584 0.10998 3.56768 15 - -
838 1.38629 1.38629 1.38629 1.38629
839 0.03546 4.05030 4.05030 1.46634 0.26236 1.09861 0.40547
840 16 3.15732 2.63877 3.20283 0.16799 16 - -
841 1.38629 1.38629 1.38629 1.38629
842 0.03546 4.05030 4.05030 1.46634 0.26236 1.09861 0.40547
843 17 3.51077 0.12132 3.55687 2.88519 17 - -
844 1.38629 1.38629 1.38629 1.38629
845 0.03546 4.05030 4.05030 1.46634 0.26236 1.09861 0.40547
846 18 2.59074 1.44894 2.65716 0.47793 18 - -
847 1.38629 1.38629 1.38629 1.38629
848 0.03546 4.05030 4.05030 1.46634 0.26236 1.09861 0.40547
849 19 2.57352 3.23287 0.18842 2.88198 19 - -
850 1.38629 1.38629 1.38629 1.38629
851 0.03546 4.05030 4.05030 1.46634 0.26236 1.09861 0.40547
852 20 0.13329 3.44781 2.84562 3.35595 20 - -
853 1.38629 1.38629 1.38629 1.38629
854 0.03546 4.05030 4.05030 1.46634 0.26236 1.09861 0.40547
855 21 2.99408 3.65584 0.10998 3.56768 21 - -
856 1.38629 1.38629 1.38629 1.38629
857 0.03546 4.05030 4.05030 1.46634 0.26236 1.09861 0.40547
858 22 2.99408 3.65584 0.10998 3.56768 22 - -
859 1.38629 1.38629 1.38629 1.38629
860 0.03546 4.05030 4.05030 1.46634 0.26236 1.09861 0.40547
861 23 2.99408 3.65584 0.10998 3.56768 23 - -
862 1.38629 1.38629 1.38629 1.38629
863 0.03546 4.05030 4.05030 1.46634 0.26236 1.09861 0.40547
864 24 3.51077 0.12132 3.55687 2.88519 24 - -
865 1.38629 1.38629 1.38629 1.38629
866 0.03546 4.05030 4.05030 1.46634 0.26236 1.09861 0.40547
867 25 0.13329 3.44781 2.84562 3.35595 25 - -
868 1.38629 1.38629 1.38629 1.38629
869 0.03546 4.05030 4.05030 1.46634 0.26236 1.09861 0.40547
870 26 3.15732 2.63877 3.20283 0.16799 26 - -
871 1.38629 1.38629 1.38629 1.38629
872 0.03546 4.05030 4.05030 1.46634 0.26236 1.09861 0.40547
873 27 2.90064 3.22314 0.13898 3.35416 27 - -
874 1.38629 1.38629 1.38629 1.38629
875 0.03546 4.05030 4.05030 1.46634 0.26236 1.09861 0.40547
876 28 3.34425 0.15723 3.39591 2.56791 28 - -
877 1.38629 1.38629 1.38629 1.38629
878 0.03546 4.05030 4.05030 1.46634 0.26236 1.09861 0.40547
879 29 3.51077 0.12132 3.55687 2.88519 29 - -
880 1.38629 1.38629 1.38629 1.38629
881 0.03546 4.05030 4.05030 1.46634 0.26236 1.09861 0.40547
882 30 3.15732 2.63877 3.20283 0.16799 30 - -
883 1.38629 1.38629 1.38629 1.38629
884 0.03546 4.05030 4.05030 1.46634 0.26236 1.09861 0.40547
885 31 2.99408 3.65584 0.10998 3.56768 31 - -
886 1.38629 1.38629 1.38629 1.38629
887 0.03546 4.05030 4.05030 1.46634 0.26236 1.09861 0.40547
888 32 3.51077 0.12132 3.55687 2.88519 32 - -
889 1.38629 1.38629 1.38629 1.38629
890 0.03546 4.05030 4.05030 1.46634 0.26236 1.09861 0.40547
891 33 3.51077 0.12132 3.55687 2.88519 33 - -
892 1.38629 1.38629 1.38629 1.38629
893 0.03546 4.05030 4.05030 1.46634 0.26236 1.09861 0.40547
894 34 3.15732 2.63877 3.20283 0.16799 34 - -
895 1.38629 1.38629 1.38629 1.38629
896 0.03546 4.05030 4.05030 1.46634 0.26236 1.09861 0.40547
897 35 2.99408 3.65584 0.10998 3.56768 35 - -
898 1.38629 1.38629 1.38629 1.38629
899 0.03546 4.05030 4.05030 1.46634 0.26236 1.09861 0.40547
900 36 0.13329 3.44781 2.84562 3.35595 36 - -
901 1.38629 1.38629 1.38629 1.38629
902 0.03546 4.05030 4.05030 1.46634 0.26236 1.09861 0.40547
903 37 2.99408 3.65584 0.10998 3.56768 37 - -
904 1.38629 1.38629 1.38629 1.38629
905 0.03546 4.05030 4.05030 1.46634 0.26236 1.09861 0.40547
906 38 3.51077 0.12132 3.55687 2.88519 38 - -
907 1.38629 1.38629 1.38629 1.38629
908 0.03546 4.05030 4.05030 1.46634 0.26236 1.09861 0.40547
909 39 2.99408 3.65584 0.10998 3.56768 39 - -
910 1.38629 1.38629 1.38629 1.38629
911 0.03546 4.05030 4.05030 1.46634 0.26236 1.09861 0.40547
912 40 3.15732 2.63877 3.20283 0.16799 40 - -
913 1.38629 1.38629 1.38629 1.38629
914 0.03546 4.05030 4.05030 1.46634 0.26236 1.09861 0.40547
915 41 3.51077 0.12132 3.55687 2.88519 41 - -
916 1.38629 1.38629 1.38629 1.38629
917 0.03546 4.05030 4.05030 1.46634 0.26236 1.09861 0.40547
918 42 3.09972 0.15335 3.35512 2.77733 42 - -
919 1.38629 1.38629 1.38629 1.38629
920 0.03546 4.05030 4.05030 1.46634 0.26236 1.09861 0.40547
921 43 1.60728 2.31659 0.62412 1.80045 43 - -
922 1.38629 1.38629 1.38629 1.38629
923 0.03546 4.05030 4.05030 1.46634 0.26236 1.09861 0.40547
924 44 3.10946 0.22201 3.16858 2.18564 44 - -
925 1.38629 1.38629 1.38629 1.38629
926 0.03546 4.05030 4.05030 1.46634 0.26236 1.09861 0.40547
927 45 3.08572 2.45946 3.13390 0.19204 45 - -
928 1.38629 1.38629 1.38629 1.38629
929 0.01788 4.03272 * 1.46634 0.26236 0.00000 *
930 //
931 HMMER3/b [3.0 | March 2010]
932 NAME 3_End_Marchantiophyta_58S_end_twob_long
933 LENG 45
934 ALPH DNA
935 RF no
936 CS no
937 MAP yes
938 DATE Wed Jan 25 17:34:51 2012
939 NSEQ 69
940 EFFN 3.407043
941 CKSUM 3150839531
942 STATS LOCAL MSV -7.5085 0.71932
943 STATS LOCAL VITERBI -7.8461 0.71932
944 STATS LOCAL FORWARD -3.6364 0.71932
945 HMM A C G T
946 m->m m->i m->d i->m i->i d->m d->d
947 COMPO 2.04551 1.00425 1.10045 1.76232
948 1.38629 1.38629 1.38629 1.38629
949 0.03632 4.02661 4.02661 1.46634 0.26236 0.00000 *
950 1 2.96602 3.61471 0.11425 3.52219 1 - -
951 1.38629 1.38629 1.38629 1.38629
952 0.03632 4.02661 4.02661 1.46634 0.26236 1.09861 0.40547
953 2 3.46377 0.12661 3.51192 2.85127 2 - -
954 1.38629 1.38629 1.38629 1.38629
955 0.03632 4.02661 4.02661 1.46634 0.26236 1.09861 0.40547
956 3 2.96602 3.61471 0.11425 3.52219 3 - -
957 1.38629 1.38629 1.38629 1.38629
958 0.03632 4.02661 4.02661 1.46634 0.26236 1.09861 0.40547
959 4 3.46377 0.12661 3.51192 2.85127 4 - -
960 1.38629 1.38629 1.38629 1.38629
961 0.03632 4.02661 4.02661 1.46634 0.26236 1.09861 0.40547
962 5 3.46377 0.12661 3.51192 2.85127 5 - -
963 1.38629 1.38629 1.38629 1.38629
964 0.03632 4.02661 4.02661 1.46634 0.26236 1.09861 0.40547
965 6 3.46377 0.12661 3.51192 2.85127 6 - -
966 1.38629 1.38629 1.38629 1.38629
967 0.03632 4.02661 4.02661 1.46634 0.26236 1.09861 0.40547
968 7 2.96602 3.61471 0.11425 3.52219 7 - -
969 1.38629 1.38629 1.38629 1.38629
970 0.03632 4.02661 4.02661 1.46634 0.26236 1.09861 0.40547
971 8 0.13843 3.40690 2.81919 3.31109 8 - -
972 1.38629 1.38629 1.38629 1.38629
973 0.03632 4.02661 4.02661 1.46634 0.26236 1.09861 0.40547
974 9 2.96602 3.61471 0.11425 3.52219 9 - -
975 1.38629 1.38629 1.38629 1.38629
976 0.03632 4.02661 4.02661 1.46634 0.26236 1.09861 0.40547
977 10 2.96602 3.61471 0.11425 3.52219 10 - -
978 1.38629 1.38629 1.38629 1.38629
979 0.03632 4.02661 4.02661 1.46634 0.26236 1.09861 0.40547
980 11 3.46377 0.12661 3.51192 2.85127 11 - -
981 1.38629 1.38629 1.38629 1.38629
982 0.03632 4.02661 4.02661 1.46634 0.26236 1.09861 0.40547
983 12 3.11557 2.61228 3.16269 0.17439 12 - -
984 1.38629 1.38629 1.38629 1.38629
985 0.03632 4.02661 4.02661 1.46634 0.26236 1.09861 0.40547
986 13 3.46377 0.12661 3.51192 2.85127 13 - -
987 1.38629 1.38629 1.38629 1.38629
988 0.03632 4.02661 4.02661 1.46634 0.26236 1.09861 0.40547
989 14 2.18816 3.18460 0.22329 3.06608 14 - -
990 1.38629 1.38629 1.38629 1.38629
991 0.03632 4.02661 4.02661 1.46634 0.26236 1.09861 0.40547
992 15 3.11557 2.61228 3.16269 0.17439 15 - -
993 1.38629 1.38629 1.38629 1.38629
994 0.03632 4.02661 4.02661 1.46634 0.26236 1.09861 0.40547
995 16 2.71675 0.39482 2.78521 1.61749 16 - -
996 1.38629 1.38629 1.38629 1.38629
997 0.03632 4.02661 4.02661 1.46634 0.26236 1.09861 0.40547
998 17 3.46377 0.12661 3.51192 2.85127 17 - -
999 1.38629 1.38629 1.38629 1.38629
1000 0.03632 4.02661 4.02661 1.46634 0.26236 1.09861 0.40547
1001 18 3.46377 0.12661 3.51192 2.85127 18 - -
1002 1.38629 1.38629 1.38629 1.38629
1003 0.03632 4.02661 4.02661 1.46634 0.26236 1.09861 0.40547
1004 19 2.59926 3.43451 0.15351 3.33160 19 - -
1005 1.38629 1.38629 1.38629 1.38629
1006 0.03632 4.02661 4.02661 1.46634 0.26236 1.09861 0.40547
1007 20 0.13843 3.40690 2.81919 3.31109 20 - -
1008 1.38629 1.38629 1.38629 1.38629
1009 0.03632 4.02661 4.02661 1.46634 0.26236 1.09861 0.40547
1010 21 2.96602 3.61471 0.11425 3.52219 21 - -
1011 1.38629 1.38629 1.38629 1.38629
1012 0.03632 4.02661 4.02661 1.46634 0.26236 1.09861 0.40547
1013 22 2.96602 3.61471 0.11425 3.52219 22 - -
1014 1.38629 1.38629 1.38629 1.38629
1015 0.03632 4.02661 4.02661 1.46634 0.26236 1.09861 0.40547
1016 23 2.96602 3.61471 0.11425 3.52219 23 - -
1017 1.38629 1.38629 1.38629 1.38629
1018 0.03632 4.02661 4.02661 1.46634 0.26236 1.09861 0.40547
1019 24 3.46377 0.12661 3.51192 2.85127 24 - -
1020 1.38629 1.38629 1.38629 1.38629
1021 0.03632 4.02661 4.02661 1.46634 0.26236 1.09861 0.40547
1022 25 0.13843 3.40690 2.81919 3.31109 25 - -
1023 1.38629 1.38629 1.38629 1.38629
1024 0.03632 4.02661 4.02661 1.46634 0.26236 1.09861 0.40547
1025 26 3.11557 2.61228 3.16269 0.17439 26 - -
1026 1.38629 1.38629 1.38629 1.38629
1027 0.03632 4.02661 4.02661 1.46634 0.26236 1.09861 0.40547
1028 27 2.96602 3.61471 0.11425 3.52219 27 - -
1029 1.38629 1.38629 1.38629 1.38629
1030 0.03632 4.02661 4.02661 1.46634 0.26236 1.09861 0.40547
1031 28 3.46377 0.12661 3.51192 2.85127 28 - -
1032 1.38629 1.38629 1.38629 1.38629
1033 0.03632 4.02661 4.02661 1.46634 0.26236 1.09861 0.40547
1034 29 3.46377 0.12661 3.51192 2.85127 29 - -
1035 1.38629 1.38629 1.38629 1.38629
1036 0.03632 4.02661 4.02661 1.46634 0.26236 1.09861 0.40547
1037 30 2.59381 1.51853 2.65973 0.45214 30 - -
1038 1.38629 1.38629 1.38629 1.38629
1039 0.03632 4.02661 4.02661 1.46634 0.26236 1.09861 0.40547
1040 31 2.96602 3.61471 0.11425 3.52219 31 - -
1041 1.38629 1.38629 1.38629 1.38629
1042 0.03632 4.02661 4.02661 1.46634 0.26236 1.09861 0.40547
1043 32 3.20944 0.18626 3.26557 2.39265 32 - -
1044 1.38629 1.38629 1.38629 1.38629
1045 0.03632 4.02661 4.02661 1.46634 0.26236 1.09861 0.40547
1046 33 3.46377 0.12661 3.51192 2.85127 33 - -
1047 1.38629 1.38629 1.38629 1.38629
1048 0.03632 4.02661 4.02661 1.46634 0.26236 1.09861 0.40547
1049 34 3.11557 2.61228 3.16269 0.17439 34 - -
1050 1.38629 1.38629 1.38629 1.38629
1051 0.03632 4.02661 4.02661 1.46634 0.26236 1.09861 0.40547
1052 35 2.96602 3.61471 0.11425 3.52219 35 - -
1053 1.38629 1.38629 1.38629 1.38629
1054 0.03632 4.02661 4.02661 1.46634 0.26236 1.09861 0.40547
1055 36 0.13843 3.40690 2.81919 3.31109 36 - -
1056 1.38629 1.38629 1.38629 1.38629
1057 0.03632 4.02661 4.02661 1.46634 0.26236 1.09861 0.40547
1058 37 2.96602 3.61471 0.11425 3.52219 37 - -
1059 1.38629 1.38629 1.38629 1.38629
1060 0.03632 4.02661 4.02661 1.46634 0.26236 1.09861 0.40547
1061 38 3.46377 0.12661 3.51192 2.85127 38 - -
1062 1.38629 1.38629 1.38629 1.38629
1063 0.03632 4.02661 4.02661 1.46634 0.26236 1.09861 0.40547
1064 39 2.96602 3.61471 0.11425 3.52219 39 - -
1065 1.38629 1.38629 1.38629 1.38629
1066 0.03632 4.02661 4.02661 1.46634 0.26236 1.09861 0.40547
1067 40 3.11557 2.61228 3.16269 0.17439 40 - -
1068 1.38629 1.38629 1.38629 1.38629
1069 0.03632 4.02661 4.02661 1.46634 0.26236 1.09861 0.40547
1070 41 3.46377 0.12661 3.51192 2.85127 41 - -
1071 1.38629 1.38629 1.38629 1.38629
1072 0.03632 4.02661 4.02661 1.46634 0.26236 1.09861 0.40547
1073 42 3.46377 0.12661 3.51192 2.85127 42 - -
1074 1.38629 1.38629 1.38629 1.38629
1075 0.03632 4.02661 4.02661 1.46634 0.26236 1.09861 0.40547
1076 43 2.43900 3.34200 0.17680 3.23306 43 - -
1077 1.38629 1.38629 1.38629 1.38629
1078 0.03632 4.02661 4.02661 1.46634 0.26236 1.09861 0.40547
1079 44 3.31928 0.15831 3.37192 2.57812 44 - -
1080 1.38629 1.38629 1.38629 1.38629
1081 0.03632 4.02661 4.02661 1.46634 0.26236 1.09861 0.40547
1082 45 2.80292 1.92973 2.86176 0.30515 45 - -
1083 1.38629 1.38629 1.38629 1.38629
1084 0.01833 4.00861 * 1.46634 0.26236 0.00000 *
1085 //
1086 HMMER3/b [3.0 | March 2010]
1087 NAME 3_End_Marchantiophyta_58S_end_twoc_long
1088 LENG 45
1089 ALPH DNA
1090 RF no
1091 CS no
1092 MAP yes
1093 DATE Wed Jan 25 17:34:58 2012
1094 NSEQ 11
1095 EFFN 3.558350
1096 CKSUM 944707035
1097 STATS LOCAL MSV -7.4441 0.71932
1098 STATS LOCAL VITERBI -7.7493 0.71932
1099 STATS LOCAL FORWARD -3.8456 0.71932
1100 HMM A C G T
1101 m->m m->i m->d i->m i->i d->m d->d
1102 COMPO 1.93151 1.08511 1.17869 1.56292
1103 1.38629 1.38629 1.38629 1.38629
1104 0.03535 4.05324 4.05324 1.46634 0.26236 0.00000 *
1105 1 2.99749 3.66086 0.10947 3.57324 1 - -
1106 1.38629 1.38629 1.38629 1.38629
1107 0.03535 4.05324 4.05324 1.46634 0.26236 1.09861 0.40547
1108 2 3.51652 0.12069 3.56237 2.88933 2 - -
1109 1.38629 1.38629 1.38629 1.38629
1110 0.03535 4.05324 4.05324 1.46634 0.26236 1.09861 0.40547
1111 3 2.99749 3.66086 0.10947 3.57324 3 - -
1112 1.38629 1.38629 1.38629 1.38629
1113 0.03535 4.05324 4.05324 1.46634 0.26236 1.09861 0.40547
1114 4 3.51652 0.12069 3.56237 2.88933 4 - -
1115 1.38629 1.38629 1.38629 1.38629
1116 0.03535 4.05324 4.05324 1.46634 0.26236 1.09861 0.40547
1117 5 3.51652 0.12069 3.56237 2.88933 5 - -
1118 1.38629 1.38629 1.38629 1.38629
1119 0.03535 4.05324 4.05324 1.46634 0.26236 1.09861 0.40547
1120 6 3.51652 0.12069 3.56237 2.88933 6 - -
1121 1.38629 1.38629 1.38629 1.38629
1122 0.03535 4.05324 4.05324 1.46634 0.26236 1.09861 0.40547
1123 7 2.99749 3.66086 0.10947 3.57324 7 - -
1124 1.38629 1.38629 1.38629 1.38629
1125 0.03535 4.05324 4.05324 1.46634 0.26236 1.09861 0.40547
1126 8 0.13268 3.45283 2.84886 3.36146 8 - -
1127 1.38629 1.38629 1.38629 1.38629
1128 0.03535 4.05324 4.05324 1.46634 0.26236 1.09861 0.40547
1129 9 2.99749 3.66086 0.10947 3.57324 9 - -
1130 1.38629 1.38629 1.38629 1.38629
1131 0.03535 4.05324 4.05324 1.46634 0.26236 1.09861 0.40547
1132 10 2.99749 3.66086 0.10947 3.57324 10 - -
1133 1.38629 1.38629 1.38629 1.38629
1134 0.03535 4.05324 4.05324 1.46634 0.26236 1.09861 0.40547
1135 11 3.51652 0.12069 3.56237 2.88933 11 - -
1136 1.38629 1.38629 1.38629 1.38629
1137 0.03535 4.05324 4.05324 1.46634 0.26236 1.09861 0.40547
1138 12 3.16247 2.64204 3.20777 0.16722 12 - -
1139 1.38629 1.38629 1.38629 1.38629
1140 0.03535 4.05324 4.05324 1.46634 0.26236 1.09861 0.40547
1141 13 3.16247 2.64204 3.20777 0.16722 13 - -
1142 1.38629 1.38629 1.38629 1.38629
1143 0.03535 4.05324 4.05324 1.46634 0.26236 1.09861 0.40547
1144 14 2.99749 3.66086 0.10947 3.57324 14 - -
1145 1.38629 1.38629 1.38629 1.38629
1146 0.03535 4.05324 4.05324 1.46634 0.26236 1.09861 0.40547
1147 15 3.16247 2.64204 3.20777 0.16722 15 - -
1148 1.38629 1.38629 1.38629 1.38629
1149 0.03535 4.05324 4.05324 1.46634 0.26236 1.09861 0.40547
1150 16 2.85970 0.32413 2.92525 1.79634 16 - -
1151 1.38629 1.38629 1.38629 1.38629
1152 0.03535 4.05324 4.05324 1.46634 0.26236 1.09861 0.40547
1153 17 3.51652 0.12069 3.56237 2.88933 17 - -
1154 1.38629 1.38629 1.38629 1.38629
1155 0.03535 4.05324 4.05324 1.46634 0.26236 1.09861 0.40547
1156 18 3.51652 0.12069 3.56237 2.88933 18 - -
1157 1.38629 1.38629 1.38629 1.38629
1158 0.03535 4.05324 4.05324 1.46634 0.26236 1.09861 0.40547
1159 19 0.13268 3.45283 2.84886 3.36146 19 - -
1160 1.38629 1.38629 1.38629 1.38629
1161 0.03535 4.05324 4.05324 1.46634 0.26236 1.09861 0.40547
1162 20 0.13268 3.45283 2.84886 3.36146 20 - -
1163 1.38629 1.38629 1.38629 1.38629
1164 0.03535 4.05324 4.05324 1.46634 0.26236 1.09861 0.40547
1165 21 2.99749 3.66086 0.10947 3.57324 21 - -
1166 1.38629 1.38629 1.38629 1.38629
1167 0.03535 4.05324 4.05324 1.46634 0.26236 1.09861 0.40547
1168 22 2.99749 3.66086 0.10947 3.57324 22 - -
1169 1.38629 1.38629 1.38629 1.38629
1170 0.03535 4.05324 4.05324 1.46634 0.26236 1.09861 0.40547
1171 23 2.99749 3.66086 0.10947 3.57324 23 - -
1172 1.38629 1.38629 1.38629 1.38629
1173 0.03535 4.05324 4.05324 1.46634 0.26236 1.09861 0.40547
1174 24 3.51652 0.12069 3.56237 2.88933 24 - -
1175 1.38629 1.38629 1.38629 1.38629
1176 0.03535 4.05324 4.05324 1.46634 0.26236 1.09861 0.40547
1177 25 0.13268 3.45283 2.84886 3.36146 25 - -
1178 1.38629 1.38629 1.38629 1.38629
1179 0.03535 4.05324 4.05324 1.46634 0.26236 1.09861 0.40547
1180 26 3.16247 2.64204 3.20777 0.16722 26 - -
1181 1.38629 1.38629 1.38629 1.38629
1182 0.03535 4.05324 4.05324 1.46634 0.26236 1.09861 0.40547
1183 27 2.99749 3.66086 0.10947 3.57324 27 - -
1184 1.38629 1.38629 1.38629 1.38629
1185 0.03535 4.05324 4.05324 1.46634 0.26236 1.09861 0.40547
1186 28 2.45623 1.03792 2.52724 0.73361 28 - -
1187 1.38629 1.38629 1.38629 1.38629
1188 0.03535 4.05324 4.05324 1.46634 0.26236 1.09861 0.40547
1189 29 3.51652 0.12069 3.56237 2.88933 29 - -
1190 1.38629 1.38629 1.38629 1.38629
1191 0.03535 4.05324 4.05324 1.46634 0.26236 1.09861 0.40547
1192 30 3.16247 2.64204 3.20777 0.16722 30 - -
1193 1.38629 1.38629 1.38629 1.38629
1194 0.03535 4.05324 4.05324 1.46634 0.26236 1.09861 0.40547
1195 31 2.99749 3.66086 0.10947 3.57324 31 - -
1196 1.38629 1.38629 1.38629 1.38629
1197 0.03535 4.05324 4.05324 1.46634 0.26236 1.09861 0.40547
1198 32 3.51652 0.12069 3.56237 2.88933 32 - -
1199 1.38629 1.38629 1.38629 1.38629
1200 0.03535 4.05324 4.05324 1.46634 0.26236 1.09861 0.40547
1201 33 3.51652 0.12069 3.56237 2.88933 33 - -
1202 1.38629 1.38629 1.38629 1.38629
1203 0.03535 4.05324 4.05324 1.46634 0.26236 1.09861 0.40547
1204 34 3.16247 2.64204 3.20777 0.16722 34 - -
1205 1.38629 1.38629 1.38629 1.38629
1206 0.03535 4.05324 4.05324 1.46634 0.26236 1.09861 0.40547
1207 35 2.99749 3.66086 0.10947 3.57324 35 - -
1208 1.38629 1.38629 1.38629 1.38629
1209 0.03535 4.05324 4.05324 1.46634 0.26236 1.09861 0.40547
1210 36 0.13268 3.45283 2.84886 3.36146 36 - -
1211 1.38629 1.38629 1.38629 1.38629
1212 0.03535 4.05324 4.05324 1.46634 0.26236 1.09861 0.40547
1213 37 2.99749 3.66086 0.10947 3.57324 37 - -
1214 1.38629 1.38629 1.38629 1.38629
1215 0.03535 4.05324 4.05324 1.46634 0.26236 1.09861 0.40547
1216 38 3.51652 0.12069 3.56237 2.88933 38 - -
1217 1.38629 1.38629 1.38629 1.38629
1218 0.03535 4.05324 4.05324 1.46634 0.26236 1.09861 0.40547
1219 39 2.99749 3.66086 0.10947 3.57324 39 - -
1220 1.38629 1.38629 1.38629 1.38629
1221 0.03535 4.05324 4.05324 1.46634 0.26236 1.09861 0.40547
1222 40 3.16247 2.64204 3.20777 0.16722 40 - -
1223 1.38629 1.38629 1.38629 1.38629
1224 0.03535 4.05324 4.05324 1.46634 0.26236 1.09861 0.40547
1225 41 3.51652 0.12069 3.56237 2.88933 41 - -
1226 1.38629 1.38629 1.38629 1.38629
1227 0.03535 4.05324 4.05324 1.46634 0.26236 1.09861 0.40547
1228 42 3.51652 0.12069 3.56237 2.88933 42 - -
1229 1.38629 1.38629 1.38629 1.38629
1230 0.03535 4.05324 4.05324 1.46634 0.26236 1.09861 0.40547
1231 43 2.01505 1.58261 1.26724 0.96853 43 - -
1232 1.38629 1.38629 1.38629 1.38629
1233 0.03535 4.05324 4.05324 1.46634 0.26236 1.09861 0.40547
1234 44 2.86287 0.32252 2.92835 1.80127 44 - -
1235 1.38629 1.38629 1.38629 1.38629
1236 0.03535 4.05324 4.05324 1.46634 0.26236 1.09861 0.40547
1237 45 3.16247 2.64204 3.20777 0.16722 45 - -
1238 1.38629 1.38629 1.38629 1.38629
1239 0.01783 4.03572 * 1.46634 0.26236 0.00000 *
1240 //
1241 HMMER3/b [3.0 | March 2010]
1242 NAME 3_End_Marchantiophyta_58S_end_twod_long
1243 LENG 45
1244 ALPH DNA
1245 RF no
1246 CS no
1247 MAP yes
1248 DATE Wed Jan 25 17:35:06 2012
1249 NSEQ 14
1250 EFFN 3.072754
1251 CKSUM 2872875780
1252 STATS LOCAL MSV -8.2157 0.71932
1253 STATS LOCAL VITERBI -7.9043 0.71932
1254 STATS LOCAL FORWARD -3.5847 0.71932
1255 HMM A C G T
1256 m->m m->i m->d i->m i->i d->m d->d
1257 COMPO 2.05213 1.01793 1.04891 1.83335
1258 1.38629 1.38629 1.38629 1.38629
1259 0.03867 3.96514 3.96514 1.46634 0.26236 0.00000 *
1260 1 2.88838 3.50239 0.12695 3.39840 1 - -
1261 1.38629 1.38629 1.38629 1.38629
1262 0.03867 3.96514 3.96514 1.46634 0.26236 1.09861 0.40547
1263 2 3.33672 0.14232 3.39016 2.75827 2 - -
1264 1.38629 1.38629 1.38629 1.38629
1265 0.03867 3.96514 3.96514 1.46634 0.26236 1.09861 0.40547
1266 3 2.88838 3.50239 0.12695 3.39840 3 - -
1267 1.38629 1.38629 1.38629 1.38629
1268 0.03867 3.96514 3.96514 1.46634 0.26236 1.09861 0.40547
1269 4 3.33672 0.14232 3.39016 2.75827 4 - -
1270 1.38629 1.38629 1.38629 1.38629
1271 0.03867 3.96514 3.96514 1.46634 0.26236 1.09861 0.40547
1272 5 3.33672 0.14232 3.39016 2.75827 5 - -
1273 1.38629 1.38629 1.38629 1.38629
1274 0.03867 3.96514 3.96514 1.46634 0.26236 1.09861 0.40547
1275 6 3.33672 0.14232 3.39016 2.75827 6 - -
1276 1.38629 1.38629 1.38629 1.38629
1277 0.03867 3.96514 3.96514 1.46634 0.26236 1.09861 0.40547
1278 7 2.88838 3.50239 0.12695 3.39840 7 - -
1279 1.38629 1.38629 1.38629 1.38629
1280 0.03867 3.96514 3.96514 1.46634 0.26236 1.09861 0.40547
1281 8 0.15343 3.29681 2.74736 3.19071 8 - -
1282 1.38629 1.38629 1.38629 1.38629
1283 0.03867 3.96514 3.96514 1.46634 0.26236 1.09861 0.40547
1284 9 2.88838 3.50239 0.12695 3.39840 9 - -
1285 1.38629 1.38629 1.38629 1.38629
1286 0.03867 3.96514 3.96514 1.46634 0.26236 1.09861 0.40547
1287 10 2.88838 3.50239 0.12695 3.39840 10 - -
1288 1.38629 1.38629 1.38629 1.38629
1289 0.03867 3.96514 3.96514 1.46634 0.26236 1.09861 0.40547
1290 11 3.33672 0.14232 3.39016 2.75827 11 - -
1291 1.38629 1.38629 1.38629 1.38629
1292 0.03867 3.96514 3.96514 1.46634 0.26236 1.09861 0.40547
1293 12 3.00514 2.54188 3.05644 0.19274 12 - -
1294 1.38629 1.38629 1.38629 1.38629
1295 0.03867 3.96514 3.96514 1.46634 0.26236 1.09861 0.40547
1296 13 3.33672 0.14232 3.39016 2.75827 13 - -
1297 1.38629 1.38629 1.38629 1.38629
1298 0.03867 3.96514 3.96514 1.46634 0.26236 1.09861 0.40547
1299 14 2.88838 3.50239 0.12695 3.39840 14 - -
1300 1.38629 1.38629 1.38629 1.38629
1301 0.03867 3.96514 3.96514 1.46634 0.26236 1.09861 0.40547
1302 15 3.00514 2.54188 3.05644 0.19274 15 - -
1303 1.38629 1.38629 1.38629 1.38629
1304 0.03867 3.96514 3.96514 1.46634 0.26236 1.09861 0.40547
1305 16 3.33672 0.14232 3.39016 2.75827 16 - -
1306 1.38629 1.38629 1.38629 1.38629
1307 0.03867 3.96514 3.96514 1.46634 0.26236 1.09861 0.40547
1308 17 3.33672 0.14232 3.39016 2.75827 17 - -
1309 1.38629 1.38629 1.38629 1.38629
1310 0.03867 3.96514 3.96514 1.46634 0.26236 1.09861 0.40547
1311 18 3.33672 0.14232 3.39016 2.75827 18 - -
1312 1.38629 1.38629 1.38629 1.38629
1313 0.03867 3.96514 3.96514 1.46634 0.26236 1.09861 0.40547
1314 19 2.88838 3.50239 0.12695 3.39840 19 - -
1315 1.38629 1.38629 1.38629 1.38629
1316 0.03867 3.96514 3.96514 1.46634 0.26236 1.09861 0.40547
1317 20 0.15343 3.29681 2.74736 3.19071 20 - -
1318 1.38629 1.38629 1.38629 1.38629
1319 0.03867 3.96514 3.96514 1.46634 0.26236 1.09861 0.40547
1320 21 2.88838 3.50239 0.12695 3.39840 21 - -
1321 1.38629 1.38629 1.38629 1.38629
1322 0.03867 3.96514 3.96514 1.46634 0.26236 1.09861 0.40547
1323 22 2.88838 3.50239 0.12695 3.39840 22 - -
1324 1.38629 1.38629 1.38629 1.38629
1325 0.03867 3.96514 3.96514 1.46634 0.26236 1.09861 0.40547
1326 23 2.88838 3.50239 0.12695 3.39840 23 - -
1327 1.38629 1.38629 1.38629 1.38629
1328 0.03867 3.96514 3.96514 1.46634 0.26236 1.09861 0.40547
1329 24 3.33672 0.14232 3.39016 2.75827 24 - -
1330 1.38629 1.38629 1.38629 1.38629
1331 0.03867 3.96514 3.96514 1.46634 0.26236 1.09861 0.40547
1332 25 0.15343 3.29681 2.74736 3.19071 25 - -
1333 1.38629 1.38629 1.38629 1.38629
1334 0.03867 3.96514 3.96514 1.46634 0.26236 1.09861 0.40547
1335 26 3.00514 2.54188 3.05644 0.19274 26 - -
1336 1.38629 1.38629 1.38629 1.38629
1337 0.03867 3.96514 3.96514 1.46634 0.26236 1.09861 0.40547
1338 27 2.88838 3.50239 0.12695 3.39840 27 - -
1339 1.38629 1.38629 1.38629 1.38629
1340 0.03867 3.96514 3.96514 1.46634 0.26236 1.09861 0.40547
1341 28 3.33672 0.14232 3.39016 2.75827 28 - -
1342 1.38629 1.38629 1.38629 1.38629
1343 0.03867 3.96514 3.96514 1.46634 0.26236 1.09861 0.40547
1344 29 3.33672 0.14232 3.39016 2.75827 29 - -
1345 1.38629 1.38629 1.38629 1.38629
1346 0.03867 3.96514 3.96514 1.46634 0.26236 1.09861 0.40547
1347 30 3.00514 2.54188 3.05644 0.19274 30 - -
1348 1.38629 1.38629 1.38629 1.38629
1349 0.03867 3.96514 3.96514 1.46634 0.26236 1.09861 0.40547
1350 31 2.88838 3.50239 0.12695 3.39840 31 - -
1351 1.38629 1.38629 1.38629 1.38629
1352 0.03867 3.96514 3.96514 1.46634 0.26236 1.09861 0.40547
1353 32 3.33672 0.14232 3.39016 2.75827 32 - -
1354 1.38629 1.38629 1.38629 1.38629
1355 0.03867 3.96514 3.96514 1.46634 0.26236 1.09861 0.40547
1356 33 3.33672 0.14232 3.39016 2.75827 33 - -
1357 1.38629 1.38629 1.38629 1.38629
1358 0.03867 3.96514 3.96514 1.46634 0.26236 1.09861 0.40547
1359 34 3.00514 2.54188 3.05644 0.19274 34 - -
1360 1.38629 1.38629 1.38629 1.38629
1361 0.03867 3.96514 3.96514 1.46634 0.26236 1.09861 0.40547
1362 35 2.88838 3.50239 0.12695 3.39840 35 - -
1363 1.38629 1.38629 1.38629 1.38629
1364 0.03867 3.96514 3.96514 1.46634 0.26236 1.09861 0.40547
1365 36 0.15343 3.29681 2.74736 3.19071 36 - -
1366 1.38629 1.38629 1.38629 1.38629
1367 0.03867 3.96514 3.96514 1.46634 0.26236 1.09861 0.40547
1368 37 2.88838 3.50239 0.12695 3.39840 37 - -
1369 1.38629 1.38629 1.38629 1.38629
1370 0.03867 3.96514 3.96514 1.46634 0.26236 1.09861 0.40547
1371 38 3.33672 0.14232 3.39016 2.75827 38 - -
1372 1.38629 1.38629 1.38629 1.38629
1373 0.03867 3.96514 3.96514 1.46634 0.26236 1.09861 0.40547
1374 39 2.88838 3.50239 0.12695 3.39840 39 - -
1375 1.38629 1.38629 1.38629 1.38629
1376 0.03867 3.96514 3.96514 1.46634 0.26236 1.09861 0.40547
1377 40 3.00514 2.54188 3.05644 0.19274 40 - -
1378 1.38629 1.38629 1.38629 1.38629
1379 0.03867 3.96514 3.96514 1.46634 0.26236 1.09861 0.40547
1380 41 3.33672 0.14232 3.39016 2.75827 41 - -
1381 1.38629 1.38629 1.38629 1.38629
1382 0.03867 3.96514 3.96514 1.46634 0.26236 1.09861 0.40547
1383 42 3.33672 0.14232 3.39016 2.75827 42 - -
1384 1.38629 1.38629 1.38629 1.38629
1385 0.03867 3.96514 3.96514 1.46634 0.26236 1.09861 0.40547
1386 43 2.88838 3.50239 0.12695 3.39840 43 - -
1387 1.38629 1.38629 1.38629 1.38629
1388 0.03867 3.96514 3.96514 1.46634 0.26236 1.09861 0.40547
1389 44 2.88838 3.50239 0.12695 3.39840 44 - -
1390 1.38629 1.38629 1.38629 1.38629
1391 0.03867 3.96514 3.96514 1.46634 0.26236 1.09861 0.40547
1392 45 3.04408 0.22016 3.10514 2.25233 45 - -
1393 1.38629 1.38629 1.38629 1.38629
1394 0.01952 3.94599 * 1.46634 0.26236 0.00000 *
1395 //
1396 HMMER3/b [3.0 | March 2010]
1397 NAME 3_End_Marchantiophyta_58S_end_twoe_long
1398 LENG 45
1399 ALPH DNA
1400 RF no
1401 CS no
1402 MAP yes
1403 DATE Wed Jan 25 17:35:14 2012
1404 NSEQ 4
1405 EFFN 3.160156
1406 CKSUM 1816074381
1407 STATS LOCAL MSV -8.2845 0.71931
1408 STATS LOCAL VITERBI -7.7890 0.71931
1409 STATS LOCAL FORWARD -4.1716 0.71931
1410 HMM A C G T
1411 m->m m->i m->d i->m i->i d->m d->d
1412 COMPO 1.72354 1.26655 1.14343 1.50941
1413 1.38629 1.38629 1.38629 1.38629
1414 0.03803 3.98158 3.98158 1.46634 0.26236 0.00000 *
1415 1 2.90985 3.53322 0.12331 3.43230 1 - -
1416 1.38629 1.38629 1.38629 1.38629
1417 0.03803 3.98158 3.98158 1.46634 0.26236 1.09861 0.40547
1418 2 3.37140 0.13782 3.42342 2.78385 2 - -
1419 1.38629 1.38629 1.38629 1.38629
1420 0.03803 3.98158 3.98158 1.46634 0.26236 1.09861 0.40547
1421 3 2.90985 3.53322 0.12331 3.43230 3 - -
1422 1.38629 1.38629 1.38629 1.38629
1423 0.03803 3.98158 3.98158 1.46634 0.26236 1.09861 0.40547
1424 4 3.37140 0.13782 3.42342 2.78385 4 - -
1425 1.38629 1.38629 1.38629 1.38629
1426 0.03803 3.98158 3.98158 1.46634 0.26236 1.09861 0.40547
1427 5 3.37140 0.13782 3.42342 2.78385 5 - -
1428 1.38629 1.38629 1.38629 1.38629
1429 0.03803 3.98158 3.98158 1.46634 0.26236 1.09861 0.40547
1430 6 3.37140 0.13782 3.42342 2.78385 6 - -
1431 1.38629 1.38629 1.38629 1.38629
1432 0.03803 3.98158 3.98158 1.46634 0.26236 1.09861 0.40547
1433 7 2.90985 3.53322 0.12331 3.43230 7 - -
1434 1.38629 1.38629 1.38629 1.38629
1435 0.03803 3.98158 3.98158 1.46634 0.26236 1.09861 0.40547
1436 8 0.14916 3.32679 2.76705 3.22344 8 - -
1437 1.38629 1.38629 1.38629 1.38629
1438 0.03803 3.98158 3.98158 1.46634 0.26236 1.09861 0.40547
1439 9 2.90985 3.53322 0.12331 3.43230 9 - -
1440 1.38629 1.38629 1.38629 1.38629
1441 0.03803 3.98158 3.98158 1.46634 0.26236 1.09861 0.40547
1442 10 2.90985 3.53322 0.12331 3.43230 10 - -
1443 1.38629 1.38629 1.38629 1.38629
1444 0.03803 3.98158 3.98158 1.46634 0.26236 1.09861 0.40547
1445 11 3.37140 0.13782 3.42342 2.78385 11 - -
1446 1.38629 1.38629 1.38629 1.38629
1447 0.03803 3.98158 3.98158 1.46634 0.26236 1.09861 0.40547
1448 12 3.03495 2.56095 3.08514 0.18757 12 - -
1449 1.38629 1.38629 1.38629 1.38629
1450 0.03803 3.98158 3.98158 1.46634 0.26236 1.09861 0.40547
1451 13 3.37140 0.13782 3.42342 2.78385 13 - -
1452 1.38629 1.38629 1.38629 1.38629
1453 0.03803 3.98158 3.98158 1.46634 0.26236 1.09861 0.40547
1454 14 0.14916 3.32679 2.76705 3.22344 14 - -
1455 1.38629 1.38629 1.38629 1.38629
1456 0.03803 3.98158 3.98158 1.46634 0.26236 1.09861 0.40547
1457 15 3.03495 2.56095 3.08514 0.18757 15 - -
1458 1.38629 1.38629 1.38629 1.38629
1459 0.03803 3.98158 3.98158 1.46634 0.26236 1.09861 0.40547
1460 16 0.14916 3.32679 2.76705 3.22344 16 - -
1461 1.38629 1.38629 1.38629 1.38629
1462 0.03803 3.98158 3.98158 1.46634 0.26236 1.09861 0.40547
1463 17 3.37140 0.13782 3.42342 2.78385 17 - -
1464 1.38629 1.38629 1.38629 1.38629
1465 0.03803 3.98158 3.98158 1.46634 0.26236 1.09861 0.40547
1466 18 3.37140 0.13782 3.42342 2.78385 18 - -
1467 1.38629 1.38629 1.38629 1.38629
1468 0.03803 3.98158 3.98158 1.46634 0.26236 1.09861 0.40547
1469 19 2.90985 3.53322 0.12331 3.43230 19 - -
1470 1.38629 1.38629 1.38629 1.38629
1471 0.03803 3.98158 3.98158 1.46634 0.26236 1.09861 0.40547
1472 20 0.14916 3.32679 2.76705 3.22344 20 - -
1473 1.38629 1.38629 1.38629 1.38629
1474 0.03803 3.98158 3.98158 1.46634 0.26236 1.09861 0.40547
1475 21 2.90985 3.53322 0.12331 3.43230 21 - -
1476 1.38629 1.38629 1.38629 1.38629
1477 0.03803 3.98158 3.98158 1.46634 0.26236 1.09861 0.40547
1478 22 2.90985 3.53322 0.12331 3.43230 22 - -
1479 1.38629 1.38629 1.38629 1.38629
1480 0.03803 3.98158 3.98158 1.46634 0.26236 1.09861 0.40547
1481 23 2.90985 3.53322 0.12331 3.43230 23 - -
1482 1.38629 1.38629 1.38629 1.38629
1483 0.03803 3.98158 3.98158 1.46634 0.26236 1.09861 0.40547
1484 24 3.37140 0.13782 3.42342 2.78385 24 - -
1485 1.38629 1.38629 1.38629 1.38629
1486 0.03803 3.98158 3.98158 1.46634 0.26236 1.09861 0.40547
1487 25 0.14916 3.32679 2.76705 3.22344 25 - -
1488 1.38629 1.38629 1.38629 1.38629
1489 0.03803 3.98158 3.98158 1.46634 0.26236 1.09861 0.40547
1490 26 3.03495 2.56095 3.08514 0.18757 26 - -
1491 1.38629 1.38629 1.38629 1.38629
1492 0.03803 3.98158 3.98158 1.46634 0.26236 1.09861 0.40547
1493 27 2.90985 3.53322 0.12331 3.43230 27 - -
1494 1.38629 1.38629 1.38629 1.38629
1495 0.03803 3.98158 3.98158 1.46634 0.26236 1.09861 0.40547
1496 28 3.03495 2.56095 3.08514 0.18757 28 - -
1497 1.38629 1.38629 1.38629 1.38629
1498 0.03803 3.98158 3.98158 1.46634 0.26236 1.09861 0.40547
1499 29 3.37140 0.13782 3.42342 2.78385 29 - -
1500 1.38629 1.38629 1.38629 1.38629
1501 0.03803 3.98158 3.98158 1.46634 0.26236 1.09861 0.40547
1502 30 3.03495 2.56095 3.08514 0.18757 30 - -
1503 1.38629 1.38629 1.38629 1.38629
1504 0.03803 3.98158 3.98158 1.46634 0.26236 1.09861 0.40547
1505 31 2.90985 3.53322 0.12331 3.43230 31 - -
1506 1.38629 1.38629 1.38629 1.38629
1507 0.03803 3.98158 3.98158 1.46634 0.26236 1.09861 0.40547
1508 32 3.03495 2.56095 3.08514 0.18757 32 - -
1509 1.38629 1.38629 1.38629 1.38629
1510 0.03803 3.98158 3.98158 1.46634 0.26236 1.09861 0.40547
1511 33 3.37140 0.13782 3.42342 2.78385 33 - -
1512 1.38629 1.38629 1.38629 1.38629
1513 0.03803 3.98158 3.98158 1.46634 0.26236 1.09861 0.40547
1514 34 3.03495 2.56095 3.08514 0.18757 34 - -
1515 1.38629 1.38629 1.38629 1.38629
1516 0.03803 3.98158 3.98158 1.46634 0.26236 1.09861 0.40547
1517 35 2.90985 3.53322 0.12331 3.43230 35 - -
1518 1.38629 1.38629 1.38629 1.38629
1519 0.03803 3.98158 3.98158 1.46634 0.26236 1.09861 0.40547
1520 36 0.14916 3.32679 2.76705 3.22344 36 - -
1521 1.38629 1.38629 1.38629 1.38629
1522 0.03803 3.98158 3.98158 1.46634 0.26236 1.09861 0.40547
1523 37 2.90985 3.53322 0.12331 3.43230 37 - -
1524 1.38629 1.38629 1.38629 1.38629
1525 0.03803 3.98158 3.98158 1.46634 0.26236 1.09861 0.40547
1526 38 3.37140 0.13782 3.42342 2.78385 38 - -
1527 1.38629 1.38629 1.38629 1.38629
1528 0.03803 3.98158 3.98158 1.46634 0.26236 1.09861 0.40547
1529 39 2.90985 3.53322 0.12331 3.43230 39 - -
1530 1.38629 1.38629 1.38629 1.38629
1531 0.03803 3.98158 3.98158 1.46634 0.26236 1.09861 0.40547
1532 40 3.03495 2.56095 3.08514 0.18757 40 - -
1533 1.38629 1.38629 1.38629 1.38629
1534 0.03803 3.98158 3.98158 1.46634 0.26236 1.09861 0.40547
1535 41 3.37140 0.13782 3.42342 2.78385 41 - -
1536 1.38629 1.38629 1.38629 1.38629
1537 0.03803 3.98158 3.98158 1.46634 0.26236 1.09861 0.40547
1538 42 0.14916 3.32679 2.76705 3.22344 42 - -
1539 1.38629 1.38629 1.38629 1.38629
1540 0.03803 3.98158 3.98158 1.46634 0.26236 1.09861 0.40547
1541 43 3.03495 2.56095 3.08514 0.18757 43 - -
1542 1.38629 1.38629 1.38629 1.38629
1543 0.03803 3.98158 3.98158 1.46634 0.26236 1.09861 0.40547
1544 44 3.03495 2.56095 3.08514 0.18757 44 - -
1545 1.38629 1.38629 1.38629 1.38629
1546 0.03803 3.98158 3.98158 1.46634 0.26236 1.09861 0.40547
1547 45 2.90985 3.53322 0.12331 3.43230 45 - -
1548 1.38629 1.38629 1.38629 1.38629
1549 0.01919 3.96275 * 1.46634 0.26236 0.00000 *
1550 //
1551 HMMER3/b [3.0 | March 2010]
1552 NAME 3_End_Marchantiophyta_58S_end_twof_long
1553 LENG 45
1554 ALPH DNA
1555 RF no
1556 CS no
1557 MAP yes
1558 DATE Wed Jan 25 17:35:21 2012
1559 NSEQ 12
1560 EFFN 3.524414
1561 CKSUM 4252090704
1562 STATS LOCAL MSV -7.3373 0.71932
1563 STATS LOCAL VITERBI -7.6151 0.71932
1564 STATS LOCAL FORWARD -4.1079 0.71932
1565 HMM A C G T
1566 m->m m->i m->d i->m i->i d->m d->d
1567 COMPO 1.90012 1.18904 1.09310 1.55703
1568 1.38629 1.38629 1.38629 1.38629
1569 0.03556 4.04733 4.04733 1.46634 0.26236 0.00000 *
1570 1 2.99061 3.65075 0.11049 3.56205 1 - -
1571 1.38629 1.38629 1.38629 1.38629
1572 0.03556 4.04733 4.04733 1.46634 0.26236 1.09861 0.40547
1573 2 3.50494 0.12196 3.55129 2.88100 2 - -
1574 1.38629 1.38629 1.38629 1.38629
1575 0.03556 4.04733 4.04733 1.46634 0.26236 1.09861 0.40547
1576 3 2.99061 3.65075 0.11049 3.56205 3 - -
1577 1.38629 1.38629 1.38629 1.38629
1578 0.03556 4.04733 4.04733 1.46634 0.26236 1.09861 0.40547
1579 4 3.50494 0.12196 3.55129 2.88100 4 - -
1580 1.38629 1.38629 1.38629 1.38629
1581 0.03556 4.04733 4.04733 1.46634 0.26236 1.09861 0.40547
1582 5 3.50494 0.12196 3.55129 2.88100 5 - -
1583 1.38629 1.38629 1.38629 1.38629
1584 0.03556 4.04733 4.04733 1.46634 0.26236 1.09861 0.40547
1585 6 3.50494 0.12196 3.55129 2.88100 6 - -
1586 1.38629 1.38629 1.38629 1.38629
1587 0.03556 4.04733 4.04733 1.46634 0.26236 1.09861 0.40547
1588 7 2.99061 3.65075 0.11049 3.56205 7 - -
1589 1.38629 1.38629 1.38629 1.38629
1590 0.03556 4.04733 4.04733 1.46634 0.26236 1.09861 0.40547
1591 8 0.13392 3.44273 2.84235 3.35037 8 - -
1592 1.38629 1.38629 1.38629 1.38629
1593 0.03556 4.04733 4.04733 1.46634 0.26236 1.09861 0.40547
1594 9 2.99061 3.65075 0.11049 3.56205 9 - -
1595 1.38629 1.38629 1.38629 1.38629
1596 0.03556 4.04733 4.04733 1.46634 0.26236 1.09861 0.40547
1597 10 2.99061 3.65075 0.11049 3.56205 10 - -
1598 1.38629 1.38629 1.38629 1.38629
1599 0.03556 4.04733 4.04733 1.46634 0.26236 1.09861 0.40547
1600 11 3.50494 0.12196 3.55129 2.88100 11 - -
1601 1.38629 1.38629 1.38629 1.38629
1602 0.03556 4.04733 4.04733 1.46634 0.26236 1.09861 0.40547
1603 12 3.15211 2.63547 3.19782 0.16877 12 - -
1604 1.38629 1.38629 1.38629 1.38629
1605 0.03556 4.04733 4.04733 1.46634 0.26236 1.09861 0.40547
1606 13 3.50494 0.12196 3.55129 2.88100 13 - -
1607 1.38629 1.38629 1.38629 1.38629
1608 0.03556 4.04733 4.04733 1.46634 0.26236 1.09861 0.40547
1609 14 2.02590 3.10448 0.25804 2.98161 14 - -
1610 1.38629 1.38629 1.38629 1.38629
1611 0.03556 4.04733 4.04733 1.46634 0.26236 1.09861 0.40547
1612 15 3.15211 2.63547 3.19782 0.16877 15 - -
1613 1.38629 1.38629 1.38629 1.38629
1614 0.03556 4.04733 4.04733 1.46634 0.26236 1.09861 0.40547
1615 16 0.13392 3.44273 2.84235 3.35037 16 - -
1616 1.38629 1.38629 1.38629 1.38629
1617 0.03556 4.04733 4.04733 1.46634 0.26236 1.09861 0.40547
1618 17 3.50494 0.12196 3.55129 2.88100 17 - -
1619 1.38629 1.38629 1.38629 1.38629
1620 0.03556 4.04733 4.04733 1.46634 0.26236 1.09861 0.40547
1621 18 3.50494 0.12196 3.55129 2.88100 18 - -
1622 1.38629 1.38629 1.38629 1.38629
1623 0.03556 4.04733 4.04733 1.46634 0.26236 1.09861 0.40547
1624 19 2.99061 3.65075 0.11049 3.56205 19 - -
1625 1.38629 1.38629 1.38629 1.38629
1626 0.03556 4.04733 4.04733 1.46634 0.26236 1.09861 0.40547
1627 20 0.13392 3.44273 2.84235 3.35037 20 - -
1628 1.38629 1.38629 1.38629 1.38629
1629 0.03556 4.04733 4.04733 1.46634 0.26236 1.09861 0.40547
1630 21 2.99061 3.65075 0.11049 3.56205 21 - -
1631 1.38629 1.38629 1.38629 1.38629
1632 0.03556 4.04733 4.04733 1.46634 0.26236 1.09861 0.40547
1633 22 2.99061 3.65075 0.11049 3.56205 22 - -
1634 1.38629 1.38629 1.38629 1.38629
1635 0.03556 4.04733 4.04733 1.46634 0.26236 1.09861 0.40547
1636 23 2.99061 3.65075 0.11049 3.56205 23 - -
1637 1.38629 1.38629 1.38629 1.38629
1638 0.03556 4.04733 4.04733 1.46634 0.26236 1.09861 0.40547
1639 24 3.50494 0.12196 3.55129 2.88100 24 - -
1640 1.38629 1.38629 1.38629 1.38629
1641 0.03556 4.04733 4.04733 1.46634 0.26236 1.09861 0.40547
1642 25 0.13392 3.44273 2.84235 3.35037 25 - -
1643 1.38629 1.38629 1.38629 1.38629
1644 0.03556 4.04733 4.04733 1.46634 0.26236 1.09861 0.40547
1645 26 3.15211 2.63547 3.19782 0.16877 26 - -
1646 1.38629 1.38629 1.38629 1.38629
1647 0.03556 4.04733 4.04733 1.46634 0.26236 1.09861 0.40547
1648 27 2.99061 3.65075 0.11049 3.56205 27 - -
1649 1.38629 1.38629 1.38629 1.38629
1650 0.03556 4.04733 4.04733 1.46634 0.26236 1.09861 0.40547
1651 28 2.45514 0.77885 2.52723 0.97993 28 - -
1652 1.38629 1.38629 1.38629 1.38629
1653 0.03556 4.04733 4.04733 1.46634 0.26236 1.09861 0.40547
1654 29 3.50494 0.12196 3.55129 2.88100 29 - -
1655 1.38629 1.38629 1.38629 1.38629
1656 0.03556 4.04733 4.04733 1.46634 0.26236 1.09861 0.40547
1657 30 3.15211 2.63547 3.19782 0.16877 30 - -
1658 1.38629 1.38629 1.38629 1.38629
1659 0.03556 4.04733 4.04733 1.46634 0.26236 1.09861 0.40547
1660 31 2.99061 3.65075 0.11049 3.56205 31 - -
1661 1.38629 1.38629 1.38629 1.38629
1662 0.03556 4.04733 4.04733 1.46634 0.26236 1.09861 0.40547
1663 32 3.15211 2.63547 3.19782 0.16877 32 - -
1664 1.38629 1.38629 1.38629 1.38629
1665 0.03556 4.04733 4.04733 1.46634 0.26236 1.09861 0.40547
1666 33 3.50494 0.12196 3.55129 2.88100 33 - -
1667 1.38629 1.38629 1.38629 1.38629
1668 0.03556 4.04733 4.04733 1.46634 0.26236 1.09861 0.40547
1669 34 3.15211 2.63547 3.19782 0.16877 34 - -
1670 1.38629 1.38629 1.38629 1.38629
1671 0.03556 4.04733 4.04733 1.46634 0.26236 1.09861 0.40547
1672 35 2.99061 3.65075 0.11049 3.56205 35 - -
1673 1.38629 1.38629 1.38629 1.38629
1674 0.03556 4.04733 4.04733 1.46634 0.26236 1.09861 0.40547
1675 36 0.13392 3.44273 2.84235 3.35037 36 - -
1676 1.38629 1.38629 1.38629 1.38629
1677 0.03556 4.04733 4.04733 1.46634 0.26236 1.09861 0.40547
1678 37 2.99061 3.65075 0.11049 3.56205 37 - -
1679 1.38629 1.38629 1.38629 1.38629
1680 0.03556 4.04733 4.04733 1.46634 0.26236 1.09861 0.40547
1681 38 3.50494 0.12196 3.55129 2.88100 38 - -
1682 1.38629 1.38629 1.38629 1.38629
1683 0.03556 4.04733 4.04733 1.46634 0.26236 1.09861 0.40547
1684 39 2.99061 3.65075 0.11049 3.56205 39 - -
1685 1.38629 1.38629 1.38629 1.38629
1686 0.03556 4.04733 4.04733 1.46634 0.26236 1.09861 0.40547
1687 40 3.15211 2.63547 3.19782 0.16877 40 - -
1688 1.38629 1.38629 1.38629 1.38629
1689 0.03556 4.04733 4.04733 1.46634 0.26236 1.09861 0.40547
1690 41 3.50494 0.12196 3.55129 2.88100 41 - -
1691 1.38629 1.38629 1.38629 1.38629
1692 0.03556 4.04733 4.04733 1.46634 0.26236 1.09861 0.40547
1693 42 1.57096 0.54164 2.38169 2.13737 42 - -
1694 1.38629 1.38629 1.38629 1.38629
1695 0.03556 4.04733 4.04733 1.46634 0.26236 1.09861 0.40547
1696 43 2.78346 1.83757 2.84334 0.32748 43 - -
1697 1.38629 1.38629 1.38629 1.38629
1698 0.03556 4.04733 4.04733 1.46634 0.26236 1.09861 0.40547
1699 44 3.15211 2.63547 3.19782 0.16877 44 - -
1700 1.38629 1.38629 1.38629 1.38629
1701 0.03556 4.04733 4.04733 1.46634 0.26236 1.09861 0.40547
1702 45 2.39961 3.34563 0.18064 3.23722 45 - -
1703 1.38629 1.38629 1.38629 1.38629
1704 0.01794 4.02970 * 1.46634 0.26236 0.00000 *
1705 //
1706 HMMER3/b [3.0 | March 2010]
1707 NAME 3_End_Marchantiophyta_58S_end_twog_long
1708 LENG 45
1709 ALPH DNA
1710 RF no
1711 CS no
1712 MAP yes
1713 DATE Wed Jan 25 17:35:30 2012
1714 NSEQ 49
1715 EFFN 3.155212
1716 CKSUM 2291896190
1717 STATS LOCAL MSV -8.0235 0.71933
1718 STATS LOCAL VITERBI -7.6669 0.71933
1719 STATS LOCAL FORWARD -4.0260 0.71933
1720 HMM A C G T
1721 m->m m->i m->d i->m i->i d->m d->d
1722 COMPO 1.82102 1.16638 1.09237 1.65429
1723 1.38629 1.38629 1.38629 1.38629
1724 0.03806 3.98066 3.98066 1.46634 0.26236 0.00000 *
1725 1 2.90866 3.53150 0.12351 3.43041 1 - -
1726 1.38629 1.38629 1.38629 1.38629
1727 0.03806 3.98066 3.98066 1.46634 0.26236 1.09861 0.40547
1728 2 3.36946 0.13806 3.42157 2.78242 2 - -
1729 1.38629 1.38629 1.38629 1.38629
1730 0.03806 3.98066 3.98066 1.46634 0.26236 1.09861 0.40547
1731 3 2.90866 3.53150 0.12351 3.43041 3 - -
1732 1.38629 1.38629 1.38629 1.38629
1733 0.03806 3.98066 3.98066 1.46634 0.26236 1.09861 0.40547
1734 4 3.36946 0.13806 3.42157 2.78242 4 - -
1735 1.38629 1.38629 1.38629 1.38629
1736 0.03806 3.98066 3.98066 1.46634 0.26236 1.09861 0.40547
1737 5 3.36946 0.13806 3.42157 2.78242 5 - -
1738 1.38629 1.38629 1.38629 1.38629
1739 0.03806 3.98066 3.98066 1.46634 0.26236 1.09861 0.40547
1740 6 3.36946 0.13806 3.42157 2.78242 6 - -
1741 1.38629 1.38629 1.38629 1.38629
1742 0.03806 3.98066 3.98066 1.46634 0.26236 1.09861 0.40547
1743 7 2.90866 3.53150 0.12351 3.43041 7 - -
1744 1.38629 1.38629 1.38629 1.38629
1745 0.03806 3.98066 3.98066 1.46634 0.26236 1.09861 0.40547
1746 8 0.14940 3.32512 2.76595 3.22162 8 - -
1747 1.38629 1.38629 1.38629 1.38629
1748 0.03806 3.98066 3.98066 1.46634 0.26236 1.09861 0.40547
1749 9 2.90866 3.53150 0.12351 3.43041 9 - -
1750 1.38629 1.38629 1.38629 1.38629
1751 0.03806 3.98066 3.98066 1.46634 0.26236 1.09861 0.40547
1752 10 2.90866 3.53150 0.12351 3.43041 10 - -
1753 1.38629 1.38629 1.38629 1.38629
1754 0.03806 3.98066 3.98066 1.46634 0.26236 1.09861 0.40547
1755 11 3.36946 0.13806 3.42157 2.78242 11 - -
1756 1.38629 1.38629 1.38629 1.38629
1757 0.03806 3.98066 3.98066 1.46634 0.26236 1.09861 0.40547
1758 12 3.03328 2.55988 3.08354 0.18786 12 - -
1759 1.38629 1.38629 1.38629 1.38629
1760 0.03806 3.98066 3.98066 1.46634 0.26236 1.09861 0.40547
1761 13 3.36946 0.13806 3.42157 2.78242 13 - -
1762 1.38629 1.38629 1.38629 1.38629
1763 0.03806 3.98066 3.98066 1.46634 0.26236 1.09861 0.40547
1764 14 2.90866 3.53150 0.12351 3.43041 14 - -
1765 1.38629 1.38629 1.38629 1.38629
1766 0.03806 3.98066 3.98066 1.46634 0.26236 1.09861 0.40547
1767 15 3.03328 2.55988 3.08354 0.18786 15 - -
1768 1.38629 1.38629 1.38629 1.38629
1769 0.03806 3.98066 3.98066 1.46634 0.26236 1.09861 0.40547
1770 16 0.14940 3.32512 2.76595 3.22162 16 - -
1771 1.38629 1.38629 1.38629 1.38629
1772 0.03806 3.98066 3.98066 1.46634 0.26236 1.09861 0.40547
1773 17 3.36946 0.13806 3.42157 2.78242 17 - -
1774 1.38629 1.38629 1.38629 1.38629
1775 0.03806 3.98066 3.98066 1.46634 0.26236 1.09861 0.40547
1776 18 3.36946 0.13806 3.42157 2.78242 18 - -
1777 1.38629 1.38629 1.38629 1.38629
1778 0.03806 3.98066 3.98066 1.46634 0.26236 1.09861 0.40547
1779 19 2.90866 3.53150 0.12351 3.43041 19 - -
1780 1.38629 1.38629 1.38629 1.38629
1781 0.03806 3.98066 3.98066 1.46634 0.26236 1.09861 0.40547
1782 20 0.14940 3.32512 2.76595 3.22162 20 - -
1783 1.38629 1.38629 1.38629 1.38629
1784 0.03806 3.98066 3.98066 1.46634 0.26236 1.09861 0.40547
1785 21 2.90866 3.53150 0.12351 3.43041 21 - -
1786 1.38629 1.38629 1.38629 1.38629
1787 0.03806 3.98066 3.98066 1.46634 0.26236 1.09861 0.40547
1788 22 2.90866 3.53150 0.12351 3.43041 22 - -
1789 1.38629 1.38629 1.38629 1.38629
1790 0.03806 3.98066 3.98066 1.46634 0.26236 1.09861 0.40547
1791 23 2.90866 3.53150 0.12351 3.43041 23 - -
1792 1.38629 1.38629 1.38629 1.38629
1793 0.03806 3.98066 3.98066 1.46634 0.26236 1.09861 0.40547
1794 24 3.36946 0.13806 3.42157 2.78242 24 - -
1795 1.38629 1.38629 1.38629 1.38629
1796 0.03806 3.98066 3.98066 1.46634 0.26236 1.09861 0.40547
1797 25 0.14940 3.32512 2.76595 3.22162 25 - -
1798 1.38629 1.38629 1.38629 1.38629
1799 0.03806 3.98066 3.98066 1.46634 0.26236 1.09861 0.40547
1800 26 3.03328 2.55988 3.08354 0.18786 26 - -
1801 1.38629 1.38629 1.38629 1.38629
1802 0.03806 3.98066 3.98066 1.46634 0.26236 1.09861 0.40547
1803 27 2.90866 3.53150 0.12351 3.43041 27 - -
1804 1.38629 1.38629 1.38629 1.38629
1805 0.03806 3.98066 3.98066 1.46634 0.26236 1.09861 0.40547
1806 28 2.85073 0.29930 2.91641 1.91913 28 - -
1807 1.38629 1.38629 1.38629 1.38629
1808 0.03806 3.98066 3.98066 1.46634 0.26236 1.09861 0.40547
1809 29 3.36946 0.13806 3.42157 2.78242 29 - -
1810 1.38629 1.38629 1.38629 1.38629
1811 0.03806 3.98066 3.98066 1.46634 0.26236 1.09861 0.40547
1812 30 3.03328 2.55988 3.08354 0.18786 30 - -
1813 1.38629 1.38629 1.38629 1.38629
1814 0.03806 3.98066 3.98066 1.46634 0.26236 1.09861 0.40547
1815 31 2.90866 3.53150 0.12351 3.43041 31 - -
1816 1.38629 1.38629 1.38629 1.38629
1817 0.03806 3.98066 3.98066 1.46634 0.26236 1.09861 0.40547
1818 32 3.03328 2.55988 3.08354 0.18786 32 - -
1819 1.38629 1.38629 1.38629 1.38629
1820 0.03806 3.98066 3.98066 1.46634 0.26236 1.09861 0.40547
1821 33 3.36946 0.13806 3.42157 2.78242 33 - -
1822 1.38629 1.38629 1.38629 1.38629
1823 0.03806 3.98066 3.98066 1.46634 0.26236 1.09861 0.40547
1824 34 3.03328 2.55988 3.08354 0.18786 34 - -
1825 1.38629 1.38629 1.38629 1.38629
1826 0.03806 3.98066 3.98066 1.46634 0.26236 1.09861 0.40547
1827 35 2.90866 3.53150 0.12351 3.43041 35 - -
1828 1.38629 1.38629 1.38629 1.38629
1829 0.03806 3.98066 3.98066 1.46634 0.26236 1.09861 0.40547
1830 36 0.14940 3.32512 2.76595 3.22162 36 - -
1831 1.38629 1.38629 1.38629 1.38629
1832 0.03806 3.98066 3.98066 1.46634 0.26236 1.09861 0.40547
1833 37 2.90866 3.53150 0.12351 3.43041 37 - -
1834 1.38629 1.38629 1.38629 1.38629
1835 0.03806 3.98066 3.98066 1.46634 0.26236 1.09861 0.40547
1836 38 3.36946 0.13806 3.42157 2.78242 38 - -
1837 1.38629 1.38629 1.38629 1.38629
1838 0.03806 3.98066 3.98066 1.46634 0.26236 1.09861 0.40547
1839 39 2.90866 3.53150 0.12351 3.43041 39 - -
1840 1.38629 1.38629 1.38629 1.38629
1841 0.03806 3.98066 3.98066 1.46634 0.26236 1.09861 0.40547
1842 40 3.03328 2.55988 3.08354 0.18786 40 - -
1843 1.38629 1.38629 1.38629 1.38629
1844 0.03806 3.98066 3.98066 1.46634 0.26236 1.09861 0.40547
1845 41 3.36946 0.13806 3.42157 2.78242 41 - -
1846 1.38629 1.38629 1.38629 1.38629
1847 0.03806 3.98066 3.98066 1.46634 0.26236 1.09861 0.40547
1848 42 3.36946 0.13806 3.42157 2.78242 42 - -
1849 1.38629 1.38629 1.38629 1.38629
1850 0.03806 3.98066 3.98066 1.46634 0.26236 1.09861 0.40547
1851 43 0.14940 3.32512 2.76595 3.22162 43 - -
1852 1.38629 1.38629 1.38629 1.38629
1853 0.03806 3.98066 3.98066 1.46634 0.26236 1.09861 0.40547
1854 44 3.03328 2.55988 3.08354 0.18786 44 - -
1855 1.38629 1.38629 1.38629 1.38629
1856 0.03806 3.98066 3.98066 1.46634 0.26236 1.09861 0.40547
1857 45 2.90866 3.53150 0.12351 3.43041 45 - -
1858 1.38629 1.38629 1.38629 1.38629
1859 0.01921 3.96181 * 1.46634 0.26236 0.00000 *
1860 //
1861 HMMER3/b [3.0 | March 2010]
1862 NAME 3_End_Marchantiophyta_58S_end_twoh_long
1863 LENG 45
1864 ALPH DNA
1865 RF no
1866 CS no
1867 MAP yes
1868 DATE Wed Jan 25 17:35:40 2012
1869 NSEQ 8
1870 EFFN 3.089844
1871 CKSUM 909806235
1872 STATS LOCAL MSV -8.0300 0.71932
1873 STATS LOCAL VITERBI -7.6424 0.71932
1874 STATS LOCAL FORWARD -3.9465 0.71932
1875 HMM A C G T
1876 m->m m->i m->d i->m i->i d->m d->d
1877 COMPO 1.92796 1.15977 1.04591 1.66270
1878 1.38629 1.38629 1.38629 1.38629
1879 0.03854 3.96837 3.96837 1.46634 0.26236 0.00000 *
1880 1 2.89265 3.50850 0.12621 3.40512 1 - -
1881 1.38629 1.38629 1.38629 1.38629
1882 0.03854 3.96837 3.96837 1.46634 0.26236 1.09861 0.40547
1883 2 3.34359 0.14142 3.39674 2.76335 2 - -
1884 1.38629 1.38629 1.38629 1.38629
1885 0.03854 3.96837 3.96837 1.46634 0.26236 1.09861 0.40547
1886 3 2.89265 3.50850 0.12621 3.40512 3 - -
1887 1.38629 1.38629 1.38629 1.38629
1888 0.03854 3.96837 3.96837 1.46634 0.26236 1.09861 0.40547
1889 4 3.34359 0.14142 3.39674 2.76335 4 - -
1890 1.38629 1.38629 1.38629 1.38629
1891 0.03854 3.96837 3.96837 1.46634 0.26236 1.09861 0.40547
1892 5 3.34359 0.14142 3.39674 2.76335 5 - -
1893 1.38629 1.38629 1.38629 1.38629
1894 0.03854 3.96837 3.96837 1.46634 0.26236 1.09861 0.40547
1895 6 3.34359 0.14142 3.39674 2.76335 6 - -
1896 1.38629 1.38629 1.38629 1.38629
1897 0.03854 3.96837 3.96837 1.46634 0.26236 1.09861 0.40547
1898 7 2.89265 3.50850 0.12621 3.40512 7 - -
1899 1.38629 1.38629 1.38629 1.38629
1900 0.03854 3.96837 3.96837 1.46634 0.26236 1.09861 0.40547
1901 8 0.15258 3.30274 2.75126 3.19718 8 - -
1902 1.38629 1.38629 1.38629 1.38629
1903 0.03854 3.96837 3.96837 1.46634 0.26236 1.09861 0.40547
1904 9 2.89265 3.50850 0.12621 3.40512 9 - -
1905 1.38629 1.38629 1.38629 1.38629
1906 0.03854 3.96837 3.96837 1.46634 0.26236 1.09861 0.40547
1907 10 2.89265 3.50850 0.12621 3.40512 10 - -
1908 1.38629 1.38629 1.38629 1.38629
1909 0.03854 3.96837 3.96837 1.46634 0.26236 1.09861 0.40547
1910 11 3.34359 0.14142 3.39674 2.76335 11 - -
1911 1.38629 1.38629 1.38629 1.38629
1912 0.03854 3.96837 3.96837 1.46634 0.26236 1.09861 0.40547
1913 12 3.01102 2.54565 3.06211 0.19171 12 - -
1914 1.38629 1.38629 1.38629 1.38629
1915 0.03854 3.96837 3.96837 1.46634 0.26236 1.09861 0.40547
1916 13 3.34359 0.14142 3.39674 2.76335 13 - -
1917 1.38629 1.38629 1.38629 1.38629
1918 0.03854 3.96837 3.96837 1.46634 0.26236 1.09861 0.40547
1919 14 2.89265 3.50850 0.12621 3.40512 14 - -
1920 1.38629 1.38629 1.38629 1.38629
1921 0.03854 3.96837 3.96837 1.46634 0.26236 1.09861 0.40547
1922 15 3.01102 2.54565 3.06211 0.19171 15 - -
1923 1.38629 1.38629 1.38629 1.38629
1924 0.03854 3.96837 3.96837 1.46634 0.26236 1.09861 0.40547
1925 16 0.15258 3.30274 2.75126 3.19718 16 - -
1926 1.38629 1.38629 1.38629 1.38629
1927 0.03854 3.96837 3.96837 1.46634 0.26236 1.09861 0.40547
1928 17 3.34359 0.14142 3.39674 2.76335 17 - -
1929 1.38629 1.38629 1.38629 1.38629
1930 0.03854 3.96837 3.96837 1.46634 0.26236 1.09861 0.40547
1931 18 3.34359 0.14142 3.39674 2.76335 18 - -
1932 1.38629 1.38629 1.38629 1.38629
1933 0.03854 3.96837 3.96837 1.46634 0.26236 1.09861 0.40547
1934 19 2.89265 3.50850 0.12621 3.40512 19 - -
1935 1.38629 1.38629 1.38629 1.38629
1936 0.03854 3.96837 3.96837 1.46634 0.26236 1.09861 0.40547
1937 20 0.15258 3.30274 2.75126 3.19718 20 - -
1938 1.38629 1.38629 1.38629 1.38629
1939 0.03854 3.96837 3.96837 1.46634 0.26236 1.09861 0.40547
1940 21 2.89265 3.50850 0.12621 3.40512 21 - -
1941 1.38629 1.38629 1.38629 1.38629
1942 0.03854 3.96837 3.96837 1.46634 0.26236 1.09861 0.40547
1943 22 2.89265 3.50850 0.12621 3.40512 22 - -
1944 1.38629 1.38629 1.38629 1.38629
1945 0.03854 3.96837 3.96837 1.46634 0.26236 1.09861 0.40547
1946 23 2.89265 3.50850 0.12621 3.40512 23 - -
1947 1.38629 1.38629 1.38629 1.38629
1948 0.03854 3.96837 3.96837 1.46634 0.26236 1.09861 0.40547
1949 24 3.34359 0.14142 3.39674 2.76335 24 - -
1950 1.38629 1.38629 1.38629 1.38629
1951 0.03854 3.96837 3.96837 1.46634 0.26236 1.09861 0.40547
1952 25 0.15258 3.30274 2.75126 3.19718 25 - -
1953 1.38629 1.38629 1.38629 1.38629
1954 0.03854 3.96837 3.96837 1.46634 0.26236 1.09861 0.40547
1955 26 3.01102 2.54565 3.06211 0.19171 26 - -
1956 1.38629 1.38629 1.38629 1.38629
1957 0.03854 3.96837 3.96837 1.46634 0.26236 1.09861 0.40547
1958 27 2.89265 3.50850 0.12621 3.40512 27 - -
1959 1.38629 1.38629 1.38629 1.38629
1960 0.03854 3.96837 3.96837 1.46634 0.26236 1.09861 0.40547
1961 28 3.34359 0.14142 3.39674 2.76335 28 - -
1962 1.38629 1.38629 1.38629 1.38629
1963 0.03854 3.96837 3.96837 1.46634 0.26236 1.09861 0.40547
1964 29 3.34359 0.14142 3.39674 2.76335 29 - -
1965 1.38629 1.38629 1.38629 1.38629
1966 0.03854 3.96837 3.96837 1.46634 0.26236 1.09861 0.40547
1967 30 3.01102 2.54565 3.06211 0.19171 30 - -
1968 1.38629 1.38629 1.38629 1.38629
1969 0.03854 3.96837 3.96837 1.46634 0.26236 1.09861 0.40547
1970 31 2.89265 3.50850 0.12621 3.40512 31 - -
1971 1.38629 1.38629 1.38629 1.38629
1972 0.03854 3.96837 3.96837 1.46634 0.26236 1.09861 0.40547
1973 32 3.01102 2.54565 3.06211 0.19171 32 - -
1974 1.38629 1.38629 1.38629 1.38629
1975 0.03854 3.96837 3.96837 1.46634 0.26236 1.09861 0.40547
1976 33 3.34359 0.14142 3.39674 2.76335 33 - -
1977 1.38629 1.38629 1.38629 1.38629
1978 0.03854 3.96837 3.96837 1.46634 0.26236 1.09861 0.40547
1979 34 3.01102 2.54565 3.06211 0.19171 34 - -
1980 1.38629 1.38629 1.38629 1.38629
1981 0.03854 3.96837 3.96837 1.46634 0.26236 1.09861 0.40547
1982 35 2.89265 3.50850 0.12621 3.40512 35 - -
1983 1.38629 1.38629 1.38629 1.38629
1984 0.03854 3.96837 3.96837 1.46634 0.26236 1.09861 0.40547
1985 36 0.15258 3.30274 2.75126 3.19718 36 - -
1986 1.38629 1.38629 1.38629 1.38629
1987 0.03854 3.96837 3.96837 1.46634 0.26236 1.09861 0.40547
1988 37 2.89265 3.50850 0.12621 3.40512 37 - -
1989 1.38629 1.38629 1.38629 1.38629
1990 0.03854 3.96837 3.96837 1.46634 0.26236 1.09861 0.40547
1991 38 3.34359 0.14142 3.39674 2.76335 38 - -
1992 1.38629 1.38629 1.38629 1.38629
1993 0.03854 3.96837 3.96837 1.46634 0.26236 1.09861 0.40547
1994 39 2.89265 3.50850 0.12621 3.40512 39 - -
1995 1.38629 1.38629 1.38629 1.38629
1996 0.03854 3.96837 3.96837 1.46634 0.26236 1.09861 0.40547
1997 40 3.01102 2.54565 3.06211 0.19171 40 - -
1998 1.38629 1.38629 1.38629 1.38629
1999 0.03854 3.96837 3.96837 1.46634 0.26236 1.09861 0.40547
2000 41 3.34359 0.14142 3.39674 2.76335 41 - -
2001 1.38629 1.38629 1.38629 1.38629
2002 0.03854 3.96837 3.96837 1.46634 0.26236 1.09861 0.40547
2003 42 3.34359 0.14142 3.39674 2.76335 42 - -
2004 1.38629 1.38629 1.38629 1.38629
2005 0.03854 3.96837 3.96837 1.46634 0.26236 1.09861 0.40547
2006 43 2.89265 3.50850 0.12621 3.40512 43 - -
2007 1.38629 1.38629 1.38629 1.38629
2008 0.03854 3.96837 3.96837 1.46634 0.26236 1.09861 0.40547
2009 44 3.01102 2.54565 3.06211 0.19171 44 - -
2010 1.38629 1.38629 1.38629 1.38629
2011 0.03854 3.96837 3.96837 1.46634 0.26236 1.09861 0.40547
2012 45 2.89265 3.50850 0.12621 3.40512 45 - -
2013 1.38629 1.38629 1.38629 1.38629
2014 0.01946 3.94929 * 1.46634 0.26236 0.00000 *
2015 //
2016 HMMER3/b [3.0 | March 2010]
2017 NAME 3_End_Marchantiophyta_58S_end_twoi_long
2018 LENG 45
2019 ALPH DNA
2020 RF no
2021 CS no
2022 MAP yes
2023 DATE Wed Jan 25 17:35:46 2012
2024 NSEQ 6
2025 EFFN 3.219727
2026 CKSUM 1018979143
2027 STATS LOCAL MSV -8.1293 0.71931
2028 STATS LOCAL VITERBI -7.7358 0.71931
2029 STATS LOCAL FORWARD -4.1604 0.71931
2030 HMM A C G T
2031 m->m m->i m->d i->m i->i d->m d->d
2032 COMPO 1.86045 1.20726 1.08050 1.58009
2033 1.38629 1.38629 1.38629 1.38629
2034 0.03760 3.99263 3.99263 1.46634 0.26236 0.00000 *
2035 1 2.92399 3.55362 0.12096 3.45477 1 - -
2036 1.38629 1.38629 1.38629 1.38629
2037 0.03760 3.99263 3.99263 1.46634 0.26236 1.09861 0.40547
2038 2 3.39443 0.13492 3.44551 2.80075 2 - -
2039 1.38629 1.38629 1.38629 1.38629
2040 0.03760 3.99263 3.99263 1.46634 0.26236 1.09861 0.40547
2041 3 2.92399 3.55362 0.12096 3.45477 3 - -
2042 1.38629 1.38629 1.38629 1.38629
2043 0.03760 3.99263 3.99263 1.46634 0.26236 1.09861 0.40547
2044 4 3.39443 0.13492 3.44551 2.80075 4 - -
2045 1.38629 1.38629 1.38629 1.38629
2046 0.03760 3.99263 3.99263 1.46634 0.26236 1.09861 0.40547
2047 5 3.39443 0.13492 3.44551 2.80075 5 - -
2048 1.38629 1.38629 1.38629 1.38629
2049 0.03760 3.99263 3.99263 1.46634 0.26236 1.09861 0.40547
2050 6 3.39443 0.13492 3.44551 2.80075 6 - -
2051 1.38629 1.38629 1.38629 1.38629
2052 0.03760 3.99263 3.99263 1.46634 0.26236 1.09861 0.40547
2053 7 2.92399 3.55362 0.12096 3.45477 7 - -
2054 1.38629 1.38629 1.38629 1.38629
2055 0.03760 3.99263 3.99263 1.46634 0.26236 1.09861 0.40547
2056 8 0.14640 3.34673 2.78009 3.24524 8 - -
2057 1.38629 1.38629 1.38629 1.38629
2058 0.03760 3.99263 3.99263 1.46634 0.26236 1.09861 0.40547
2059 9 2.92399 3.55362 0.12096 3.45477 9 - -
2060 1.38629 1.38629 1.38629 1.38629
2061 0.03760 3.99263 3.99263 1.46634 0.26236 1.09861 0.40547
2062 10 2.92399 3.55362 0.12096 3.45477 10 - -
2063 1.38629 1.38629 1.38629 1.38629
2064 0.03760 3.99263 3.99263 1.46634 0.26236 1.09861 0.40547
2065 11 3.39443 0.13492 3.44551 2.80075 11 - -
2066 1.38629 1.38629 1.38629 1.38629
2067 0.03760 3.99263 3.99263 1.46634 0.26236 1.09861 0.40547
2068 12 3.05488 2.57367 3.10432 0.18421 12 - -
2069 1.38629 1.38629 1.38629 1.38629
2070 0.03760 3.99263 3.99263 1.46634 0.26236 1.09861 0.40547
2071 13 3.39443 0.13492 3.44551 2.80075 13 - -
2072 1.38629 1.38629 1.38629 1.38629
2073 0.03760 3.99263 3.99263 1.46634 0.26236 1.09861 0.40547
2074 14 2.92399 3.55362 0.12096 3.45477 14 - -
2075 1.38629 1.38629 1.38629 1.38629
2076 0.03760 3.99263 3.99263 1.46634 0.26236 1.09861 0.40547
2077 15 3.05488 2.57367 3.10432 0.18421 15 - -
2078 1.38629 1.38629 1.38629 1.38629
2079 0.03760 3.99263 3.99263 1.46634 0.26236 1.09861 0.40547
2080 16 0.14640 3.34673 2.78009 3.24524 16 - -
2081 1.38629 1.38629 1.38629 1.38629
2082 0.03760 3.99263 3.99263 1.46634 0.26236 1.09861 0.40547
2083 17 3.39443 0.13492 3.44551 2.80075 17 - -
2084 1.38629 1.38629 1.38629 1.38629
2085 0.03760 3.99263 3.99263 1.46634 0.26236 1.09861 0.40547
2086 18 3.39443 0.13492 3.44551 2.80075 18 - -
2087 1.38629 1.38629 1.38629 1.38629
2088 0.03760 3.99263 3.99263 1.46634 0.26236 1.09861 0.40547
2089 19 0.52608 2.60866 1.38344 2.46821 19 - -
2090 1.38629 1.38629 1.38629 1.38629
2091 0.03760 3.99263 3.99263 1.46634 0.26236 1.09861 0.40547
2092 20 0.14640 3.34673 2.78009 3.24524 20 - -
2093 1.38629 1.38629 1.38629 1.38629
2094 0.03760 3.99263 3.99263 1.46634 0.26236 1.09861 0.40547
2095 21 2.92399 3.55362 0.12096 3.45477 21 - -
2096 1.38629 1.38629 1.38629 1.38629
2097 0.03760 3.99263 3.99263 1.46634 0.26236 1.09861 0.40547
2098 22 2.92399 3.55362 0.12096 3.45477 22 - -
2099 1.38629 1.38629 1.38629 1.38629
2100 0.03760 3.99263 3.99263 1.46634 0.26236 1.09861 0.40547
2101 23 2.92399 3.55362 0.12096 3.45477 23 - -
2102 1.38629 1.38629 1.38629 1.38629
2103 0.03760 3.99263 3.99263 1.46634 0.26236 1.09861 0.40547
2104 24 3.39443 0.13492 3.44551 2.80075 24 - -
2105 1.38629 1.38629 1.38629 1.38629
2106 0.03760 3.99263 3.99263 1.46634 0.26236 1.09861 0.40547
2107 25 0.14640 3.34673 2.78009 3.24524 25 - -
2108 1.38629 1.38629 1.38629 1.38629
2109 0.03760 3.99263 3.99263 1.46634 0.26236 1.09861 0.40547
2110 26 3.05488 2.57367 3.10432 0.18421 26 - -
2111 1.38629 1.38629 1.38629 1.38629
2112 0.03760 3.99263 3.99263 1.46634 0.26236 1.09861 0.40547
2113 27 2.92399 3.55362 0.12096 3.45477 27 - -
2114 1.38629 1.38629 1.38629 1.38629
2115 0.03760 3.99263 3.99263 1.46634 0.26236 1.09861 0.40547
2116 28 3.05488 2.57367 3.10432 0.18421 28 - -
2117 1.38629 1.38629 1.38629 1.38629
2118 0.03760 3.99263 3.99263 1.46634 0.26236 1.09861 0.40547
2119 29 3.39443 0.13492 3.44551 2.80075 29 - -
2120 1.38629 1.38629 1.38629 1.38629
2121 0.03760 3.99263 3.99263 1.46634 0.26236 1.09861 0.40547
2122 30 3.05488 2.57367 3.10432 0.18421 30 - -
2123 1.38629 1.38629 1.38629 1.38629
2124 0.03760 3.99263 3.99263 1.46634 0.26236 1.09861 0.40547
2125 31 2.92399 3.55362 0.12096 3.45477 31 - -
2126 1.38629 1.38629 1.38629 1.38629
2127 0.03760 3.99263 3.99263 1.46634 0.26236 1.09861 0.40547
2128 32 3.05488 2.57367 3.10432 0.18421 32 - -
2129 1.38629 1.38629 1.38629 1.38629
2130 0.03760 3.99263 3.99263 1.46634 0.26236 1.09861 0.40547
2131 33 3.39443 0.13492 3.44551 2.80075 33 - -
2132 1.38629 1.38629 1.38629 1.38629
2133 0.03760 3.99263 3.99263 1.46634 0.26236 1.09861 0.40547
2134 34 3.05488 2.57367 3.10432 0.18421 34 - -
2135 1.38629 1.38629 1.38629 1.38629
2136 0.03760 3.99263 3.99263 1.46634 0.26236 1.09861 0.40547
2137 35 2.92399 3.55362 0.12096 3.45477 35 - -
2138 1.38629 1.38629 1.38629 1.38629
2139 0.03760 3.99263 3.99263 1.46634 0.26236 1.09861 0.40547
2140 36 0.14640 3.34673 2.78009 3.24524 36 - -
2141 1.38629 1.38629 1.38629 1.38629
2142 0.03760 3.99263 3.99263 1.46634 0.26236 1.09861 0.40547
2143 37 2.92399 3.55362 0.12096 3.45477 37 - -
2144 1.38629 1.38629 1.38629 1.38629
2145 0.03760 3.99263 3.99263 1.46634 0.26236 1.09861 0.40547
2146 38 3.39443 0.13492 3.44551 2.80075 38 - -
2147 1.38629 1.38629 1.38629 1.38629
2148 0.03760 3.99263 3.99263 1.46634 0.26236 1.09861 0.40547
2149 39 2.92399 3.55362 0.12096 3.45477 39 - -
2150 1.38629 1.38629 1.38629 1.38629
2151 0.03760 3.99263 3.99263 1.46634 0.26236 1.09861 0.40547
2152 40 3.05488 2.57367 3.10432 0.18421 40 - -
2153 1.38629 1.38629 1.38629 1.38629
2154 0.03760 3.99263 3.99263 1.46634 0.26236 1.09861 0.40547
2155 41 3.39443 0.13492 3.44551 2.80075 41 - -
2156 1.38629 1.38629 1.38629 1.38629
2157 0.03760 3.99263 3.99263 1.46634 0.26236 1.09861 0.40547
2158 42 3.39443 0.13492 3.44551 2.80075 42 - -
2159 1.38629 1.38629 1.38629 1.38629
2160 0.03760 3.99263 3.99263 1.46634 0.26236 1.09861 0.40547
2161 43 2.92399 3.55362 0.12096 3.45477 43 - -
2162 1.38629 1.38629 1.38629 1.38629
2163 0.03760 3.99263 3.99263 1.46634 0.26236 1.09861 0.40547
2164 44 3.05488 2.57367 3.10432 0.18421 44 - -
2165 1.38629 1.38629 1.38629 1.38629
2166 0.03760 3.99263 3.99263 1.46634 0.26236 1.09861 0.40547
2167 45 2.92399 3.55362 0.12096 3.45477 45 - -
2168 1.38629 1.38629 1.38629 1.38629
2169 0.01898 3.97401 * 1.46634 0.26236 0.00000 *
2170 //
2171 HMMER3/b [3.0 | March 2010]
2172 NAME 3_End_Marchantiophyta_58S_end_twoj_long
2173 LENG 45
2174 ALPH DNA
2175 RF no
2176 CS no
2177 MAP yes
2178 DATE Wed Jan 25 17:35:54 2012
2179 NSEQ 5
2180 EFFN 3.315430
2181 CKSUM 1914285711
2182 STATS LOCAL MSV -8.1077 0.71931
2183 STATS LOCAL VITERBI -7.6269 0.71931
2184 STATS LOCAL FORWARD -4.2009 0.71931
2185 HMM A C G T
2186 m->m m->i m->d i->m i->i d->m d->d
2187 COMPO 1.81863 1.16585 1.08606 1.66839
2188 1.38629 1.38629 1.38629 1.38629
2189 0.03694 4.01013 4.01013 1.46634 0.26236 0.00000 *
2190 1 2.94591 3.58540 0.11742 3.48982 1 - -
2191 1.38629 1.38629 1.38629 1.38629
2192 0.03694 4.01013 4.01013 1.46634 0.26236 1.09861 0.40547
2193 2 3.43043 0.13053 3.48000 2.82705 2 - -
2194 1.38629 1.38629 1.38629 1.38629
2195 0.03694 4.01013 4.01013 1.46634 0.26236 1.09861 0.40547
2196 3 2.94591 3.58540 0.11742 3.48982 3 - -
2197 1.38629 1.38629 1.38629 1.38629
2198 0.03694 4.01013 4.01013 1.46634 0.26236 1.09861 0.40547
2199 4 3.43043 0.13053 3.48000 2.82705 4 - -
2200 1.38629 1.38629 1.38629 1.38629
2201 0.03694 4.01013 4.01013 1.46634 0.26236 1.09861 0.40547
2202 5 3.43043 0.13053 3.48000 2.82705 5 - -
2203 1.38629 1.38629 1.38629 1.38629
2204 0.03694 4.01013 4.01013 1.46634 0.26236 1.09861 0.40547
2205 6 2.43265 0.73484 2.50519 1.04710 6 - -
2206 1.38629 1.38629 1.38629 1.38629
2207 0.03694 4.01013 4.01013 1.46634 0.26236 1.09861 0.40547
2208 7 2.94591 3.58540 0.11742 3.48982 7 - -
2209 1.38629 1.38629 1.38629 1.38629
2210 0.03694 4.01013 4.01013 1.46634 0.26236 1.09861 0.40547
2211 8 0.14220 3.37794 2.80041 3.27938 8 - -
2212 1.38629 1.38629 1.38629 1.38629
2213 0.03694 4.01013 4.01013 1.46634 0.26236 1.09861 0.40547
2214 9 2.94591 3.58540 0.11742 3.48982 9 - -
2215 1.38629 1.38629 1.38629 1.38629
2216 0.03694 4.01013 4.01013 1.46634 0.26236 1.09861 0.40547
2217 10 2.94591 3.58540 0.11742 3.48982 10 - -
2218 1.38629 1.38629 1.38629 1.38629
2219 0.03694 4.01013 4.01013 1.46634 0.26236 1.09861 0.40547
2220 11 3.43043 0.13053 3.48000 2.82705 11 - -
2221 1.38629 1.38629 1.38629 1.38629
2222 0.03694 4.01013 4.01013 1.46634 0.26236 1.09861 0.40547
2223 12 3.08626 2.59365 3.13451 0.17906 12 - -
2224 1.38629 1.38629 1.38629 1.38629
2225 0.03694 4.01013 4.01013 1.46634 0.26236 1.09861 0.40547
2226 13 3.43043 0.13053 3.48000 2.82705 13 - -
2227 1.38629 1.38629 1.38629 1.38629
2228 0.03694 4.01013 4.01013 1.46634 0.26236 1.09861 0.40547
2229 14 2.94591 3.58540 0.11742 3.48982 14 - -
2230 1.38629 1.38629 1.38629 1.38629
2231 0.03694 4.01013 4.01013 1.46634 0.26236 1.09861 0.40547
2232 15 3.08626 2.59365 3.13451 0.17906 15 - -
2233 1.38629 1.38629 1.38629 1.38629
2234 0.03694 4.01013 4.01013 1.46634 0.26236 1.09861 0.40547
2235 16 0.14220 3.37794 2.80041 3.27938 16 - -
2236 1.38629 1.38629 1.38629 1.38629
2237 0.03694 4.01013 4.01013 1.46634 0.26236 1.09861 0.40547
2238 17 3.43043 0.13053 3.48000 2.82705 17 - -
2239 1.38629 1.38629 1.38629 1.38629
2240 0.03694 4.01013 4.01013 1.46634 0.26236 1.09861 0.40547
2241 18 3.43043 0.13053 3.48000 2.82705 18 - -
2242 1.38629 1.38629 1.38629 1.38629
2243 0.03694 4.01013 4.01013 1.46634 0.26236 1.09861 0.40547
2244 19 2.94591 3.58540 0.11742 3.48982 19 - -
2245 1.38629 1.38629 1.38629 1.38629
2246 0.03694 4.01013 4.01013 1.46634 0.26236 1.09861 0.40547
2247 20 0.14220 3.37794 2.80041 3.27938 20 - -
2248 1.38629 1.38629 1.38629 1.38629
2249 0.03694 4.01013 4.01013 1.46634 0.26236 1.09861 0.40547
2250 21 2.94591 3.58540 0.11742 3.48982 21 - -
2251 1.38629 1.38629 1.38629 1.38629
2252 0.03694 4.01013 4.01013 1.46634 0.26236 1.09861 0.40547
2253 22 2.94591 3.58540 0.11742 3.48982 22 - -
2254 1.38629 1.38629 1.38629 1.38629
2255 0.03694 4.01013 4.01013 1.46634 0.26236 1.09861 0.40547
2256 23 2.94591 3.58540 0.11742 3.48982 23 - -
2257 1.38629 1.38629 1.38629 1.38629
2258 0.03694 4.01013 4.01013 1.46634 0.26236 1.09861 0.40547
2259 24 3.43043 0.13053 3.48000 2.82705 24 - -
2260 1.38629 1.38629 1.38629 1.38629
2261 0.03694 4.01013 4.01013 1.46634 0.26236 1.09861 0.40547
2262 25 0.14220 3.37794 2.80041 3.27938 25 - -
2263 1.38629 1.38629 1.38629 1.38629
2264 0.03694 4.01013 4.01013 1.46634 0.26236 1.09861 0.40547
2265 26 3.08626 2.59365 3.13451 0.17906 26 - -
2266 1.38629 1.38629 1.38629 1.38629
2267 0.03694 4.01013 4.01013 1.46634 0.26236 1.09861 0.40547
2268 27 2.94591 3.58540 0.11742 3.48982 27 - -
2269 1.38629 1.38629 1.38629 1.38629
2270 0.03694 4.01013 4.01013 1.46634 0.26236 1.09861 0.40547
2271 28 2.44453 1.19261 2.51493 0.63689 28 - -
2272 1.38629 1.38629 1.38629 1.38629
2273 0.03694 4.01013 4.01013 1.46634 0.26236 1.09861 0.40547
2274 29 3.43043 0.13053 3.48000 2.82705 29 - -
2275 1.38629 1.38629 1.38629 1.38629
2276 0.03694 4.01013 4.01013 1.46634 0.26236 1.09861 0.40547
2277 30 3.08626 2.59365 3.13451 0.17906 30 - -
2278 1.38629 1.38629 1.38629 1.38629
2279 0.03694 4.01013 4.01013 1.46634 0.26236 1.09861 0.40547
2280 31 2.94591 3.58540 0.11742 3.48982 31 - -
2281 1.38629 1.38629 1.38629 1.38629
2282 0.03694 4.01013 4.01013 1.46634 0.26236 1.09861 0.40547
2283 32 3.08626 2.59365 3.13451 0.17906 32 - -
2284 1.38629 1.38629 1.38629 1.38629
2285 0.03694 4.01013 4.01013 1.46634 0.26236 1.09861 0.40547
2286 33 3.43043 0.13053 3.48000 2.82705 33 - -
2287 1.38629 1.38629 1.38629 1.38629
2288 0.03694 4.01013 4.01013 1.46634 0.26236 1.09861 0.40547
2289 34 3.08626 2.59365 3.13451 0.17906 34 - -
2290 1.38629 1.38629 1.38629 1.38629
2291 0.03694 4.01013 4.01013 1.46634 0.26236 1.09861 0.40547
2292 35 2.94591 3.58540 0.11742 3.48982 35 - -
2293 1.38629 1.38629 1.38629 1.38629
2294 0.03694 4.01013 4.01013 1.46634 0.26236 1.09861 0.40547
2295 36 0.14220 3.37794 2.80041 3.27938 36 - -
2296 1.38629 1.38629 1.38629 1.38629
2297 0.03694 4.01013 4.01013 1.46634 0.26236 1.09861 0.40547
2298 37 2.94591 3.58540 0.11742 3.48982 37 - -
2299 1.38629 1.38629 1.38629 1.38629
2300 0.03694 4.01013 4.01013 1.46634 0.26236 1.09861 0.40547
2301 38 3.43043 0.13053 3.48000 2.82705 38 - -
2302 1.38629 1.38629 1.38629 1.38629
2303 0.03694 4.01013 4.01013 1.46634 0.26236 1.09861 0.40547
2304 39 2.94591 3.58540 0.11742 3.48982 39 - -
2305 1.38629 1.38629 1.38629 1.38629
2306 0.03694 4.01013 4.01013 1.46634 0.26236 1.09861 0.40547
2307 40 3.08626 2.59365 3.13451 0.17906 40 - -
2308 1.38629 1.38629 1.38629 1.38629
2309 0.03694 4.01013 4.01013 1.46634 0.26236 1.09861 0.40547
2310 41 3.43043 0.13053 3.48000 2.82705 41 - -
2311 1.38629 1.38629 1.38629 1.38629
2312 0.03694 4.01013 4.01013 1.46634 0.26236 1.09861 0.40547
2313 42 3.43043 0.13053 3.48000 2.82705 42 - -
2314 1.38629 1.38629 1.38629 1.38629
2315 0.03694 4.01013 4.01013 1.46634 0.26236 1.09861 0.40547
2316 43 0.14220 3.37794 2.80041 3.27938 43 - -
2317 1.38629 1.38629 1.38629 1.38629
2318 0.03694 4.01013 4.01013 1.46634 0.26236 1.09861 0.40547
2319 44 3.43043 0.13053 3.48000 2.82705 44 - -
2320 1.38629 1.38629 1.38629 1.38629
2321 0.03694 4.01013 4.01013 1.46634 0.26236 1.09861 0.40547
2322 45 2.94591 3.58540 0.11742 3.48982 45 - -
2323 1.38629 1.38629 1.38629 1.38629
2324 0.01864 3.99184 * 1.46634 0.26236 0.00000 *
2325 //
2326 HMMER3/b [3.0 | March 2010]
2327 NAME 3_End_Marchantiophyta_58S_end_twok_long
2328 LENG 45
2329 ALPH DNA
2330 RF no
2331 CS no
2332 MAP yes
2333 DATE Wed Jan 25 17:36:02 2012
2334 NSEQ 7
2335 EFFN 3.168457
2336 CKSUM 4015894505
2337 STATS LOCAL MSV -8.1875 0.71932
2338 STATS LOCAL VITERBI -7.6009 0.71932
2339 STATS LOCAL FORWARD -4.1596 0.71932
2340 HMM A C G T
2341 m->m m->i m->d i->m i->i d->m d->d
2342 COMPO 1.93262 1.20466 1.14638 1.43694
2343 1.38629 1.38629 1.38629 1.38629
2344 0.03797 3.98313 3.98313 1.46634 0.26236 0.00000 *
2345 1 2.91185 3.53609 0.12297 3.43546 1 - -
2346 1.38629 1.38629 1.38629 1.38629
2347 0.03797 3.98313 3.98313 1.46634 0.26236 1.09861 0.40547
2348 2 3.37463 0.13741 3.42653 2.78623 2 - -
2349 1.38629 1.38629 1.38629 1.38629
2350 0.03797 3.98313 3.98313 1.46634 0.26236 1.09861 0.40547
2351 3 2.91185 3.53609 0.12297 3.43546 3 - -
2352 1.38629 1.38629 1.38629 1.38629
2353 0.03797 3.98313 3.98313 1.46634 0.26236 1.09861 0.40547
2354 4 3.37463 0.13741 3.42653 2.78623 4 - -
2355 1.38629 1.38629 1.38629 1.38629
2356 0.03797 3.98313 3.98313 1.46634 0.26236 1.09861 0.40547
2357 5 3.37463 0.13741 3.42653 2.78623 5 - -
2358 1.38629 1.38629 1.38629 1.38629
2359 0.03797 3.98313 3.98313 1.46634 0.26236 1.09861 0.40547
2360 6 3.37463 0.13741 3.42653 2.78623 6 - -
2361 1.38629 1.38629 1.38629 1.38629
2362 0.03797 3.98313 3.98313 1.46634 0.26236 1.09861 0.40547
2363 7 2.91185 3.53609 0.12297 3.43546 7 - -
2364 1.38629 1.38629 1.38629 1.38629
2365 0.03797 3.98313 3.98313 1.46634 0.26236 1.09861 0.40547
2366 8 0.14877 3.32959 2.76888 3.22651 8 - -
2367 1.38629 1.38629 1.38629 1.38629
2368 0.03797 3.98313 3.98313 1.46634 0.26236 1.09861 0.40547
2369 9 2.91185 3.53609 0.12297 3.43546 9 - -
2370 1.38629 1.38629 1.38629 1.38629
2371 0.03797 3.98313 3.98313 1.46634 0.26236 1.09861 0.40547
2372 10 2.91185 3.53609 0.12297 3.43546 10 - -
2373 1.38629 1.38629 1.38629 1.38629
2374 0.03797 3.98313 3.98313 1.46634 0.26236 1.09861 0.40547
2375 11 3.37463 0.13741 3.42653 2.78623 11 - -
2376 1.38629 1.38629 1.38629 1.38629
2377 0.03797 3.98313 3.98313 1.46634 0.26236 1.09861 0.40547
2378 12 3.03775 2.56273 3.08783 0.18710 12 - -
2379 1.38629 1.38629 1.38629 1.38629
2380 0.03797 3.98313 3.98313 1.46634 0.26236 1.09861 0.40547
2381 13 3.37463 0.13741 3.42653 2.78623 13 - -
2382 1.38629 1.38629 1.38629 1.38629
2383 0.03797 3.98313 3.98313 1.46634 0.26236 1.09861 0.40547
2384 14 3.03775 2.56273 3.08783 0.18710 14 - -
2385 1.38629 1.38629 1.38629 1.38629
2386 0.03797 3.98313 3.98313 1.46634 0.26236 1.09861 0.40547
2387 15 3.03775 2.56273 3.08783 0.18710 15 - -
2388 1.38629 1.38629 1.38629 1.38629
2389 0.03797 3.98313 3.98313 1.46634 0.26236 1.09861 0.40547
2390 16 0.14877 3.32959 2.76888 3.22651 16 - -
2391 1.38629 1.38629 1.38629 1.38629
2392 0.03797 3.98313 3.98313 1.46634 0.26236 1.09861 0.40547
2393 17 3.37463 0.13741 3.42653 2.78623 17 - -
2394 1.38629 1.38629 1.38629 1.38629
2395 0.03797 3.98313 3.98313 1.46634 0.26236 1.09861 0.40547
2396 18 3.37463 0.13741 3.42653 2.78623 18 - -
2397 1.38629 1.38629 1.38629 1.38629
2398 0.03797 3.98313 3.98313 1.46634 0.26236 1.09861 0.40547
2399 19 2.91185 3.53609 0.12297 3.43546 19 - -
2400 1.38629 1.38629 1.38629 1.38629
2401 0.03797 3.98313 3.98313 1.46634 0.26236 1.09861 0.40547
2402 20 0.14877 3.32959 2.76888 3.22651 20 - -
2403 1.38629 1.38629 1.38629 1.38629
2404 0.03797 3.98313 3.98313 1.46634 0.26236 1.09861 0.40547
2405 21 2.91185 3.53609 0.12297 3.43546 21 - -
2406 1.38629 1.38629 1.38629 1.38629
2407 0.03797 3.98313 3.98313 1.46634 0.26236 1.09861 0.40547
2408 22 2.91185 3.53609 0.12297 3.43546 22 - -
2409 1.38629 1.38629 1.38629 1.38629
2410 0.03797 3.98313 3.98313 1.46634 0.26236 1.09861 0.40547
2411 23 2.91185 3.53609 0.12297 3.43546 23 - -
2412 1.38629 1.38629 1.38629 1.38629
2413 0.03797 3.98313 3.98313 1.46634 0.26236 1.09861 0.40547
2414 24 3.37463 0.13741 3.42653 2.78623 24 - -
2415 1.38629 1.38629 1.38629 1.38629
2416 0.03797 3.98313 3.98313 1.46634 0.26236 1.09861 0.40547
2417 25 0.14877 3.32959 2.76888 3.22651 25 - -
2418 1.38629 1.38629 1.38629 1.38629
2419 0.03797 3.98313 3.98313 1.46634 0.26236 1.09861 0.40547
2420 26 3.03775 2.56273 3.08783 0.18710 26 - -
2421 1.38629 1.38629 1.38629 1.38629
2422 0.03797 3.98313 3.98313 1.46634 0.26236 1.09861 0.40547
2423 27 2.91185 3.53609 0.12297 3.43546 27 - -
2424 1.38629 1.38629 1.38629 1.38629
2425 0.03797 3.98313 3.98313 1.46634 0.26236 1.09861 0.40547
2426 28 3.03775 2.56273 3.08783 0.18710 28 - -
2427 1.38629 1.38629 1.38629 1.38629
2428 0.03797 3.98313 3.98313 1.46634 0.26236 1.09861 0.40547
2429 29 3.37463 0.13741 3.42653 2.78623 29 - -
2430 1.38629 1.38629 1.38629 1.38629
2431 0.03797 3.98313 3.98313 1.46634 0.26236 1.09861 0.40547
2432 30 3.03775 2.56273 3.08783 0.18710 30 - -
2433 1.38629 1.38629 1.38629 1.38629
2434 0.03797 3.98313 3.98313 1.46634 0.26236 1.09861 0.40547
2435 31 2.91185 3.53609 0.12297 3.43546 31 - -
2436 1.38629 1.38629 1.38629 1.38629
2437 0.03797 3.98313 3.98313 1.46634 0.26236 1.09861 0.40547
2438 32 3.03775 2.56273 3.08783 0.18710 32 - -
2439 1.38629 1.38629 1.38629 1.38629
2440 0.03797 3.98313 3.98313 1.46634 0.26236 1.09861 0.40547
2441 33 3.37463 0.13741 3.42653 2.78623 33 - -
2442 1.38629 1.38629 1.38629 1.38629
2443 0.03797 3.98313 3.98313 1.46634 0.26236 1.09861 0.40547
2444 34 3.03775 2.56273 3.08783 0.18710 34 - -
2445 1.38629 1.38629 1.38629 1.38629
2446 0.03797 3.98313 3.98313 1.46634 0.26236 1.09861 0.40547
2447 35 2.91185 3.53609 0.12297 3.43546 35 - -
2448 1.38629 1.38629 1.38629 1.38629
2449 0.03797 3.98313 3.98313 1.46634 0.26236 1.09861 0.40547
2450 36 0.14877 3.32959 2.76888 3.22651 36 - -
2451 1.38629 1.38629 1.38629 1.38629
2452 0.03797 3.98313 3.98313 1.46634 0.26236 1.09861 0.40547
2453 37 2.91185 3.53609 0.12297 3.43546 37 - -
2454 1.38629 1.38629 1.38629 1.38629
2455 0.03797 3.98313 3.98313 1.46634 0.26236 1.09861 0.40547
2456 38 3.37463 0.13741 3.42653 2.78623 38 - -
2457 1.38629 1.38629 1.38629 1.38629
2458 0.03797 3.98313 3.98313 1.46634 0.26236 1.09861 0.40547
2459 39 2.91185 3.53609 0.12297 3.43546 39 - -
2460 1.38629 1.38629 1.38629 1.38629
2461 0.03797 3.98313 3.98313 1.46634 0.26236 1.09861 0.40547
2462 40 3.03775 2.56273 3.08783 0.18710 40 - -
2463 1.38629 1.38629 1.38629 1.38629
2464 0.03797 3.98313 3.98313 1.46634 0.26236 1.09861 0.40547
2465 41 3.37463 0.13741 3.42653 2.78623 41 - -
2466 1.38629 1.38629 1.38629 1.38629
2467 0.03797 3.98313 3.98313 1.46634 0.26236 1.09861 0.40547
2468 42 3.37463 0.13741 3.42653 2.78623 42 - -
2469 1.38629 1.38629 1.38629 1.38629
2470 0.03797 3.98313 3.98313 1.46634 0.26236 1.09861 0.40547
2471 43 3.03775 2.56273 3.08783 0.18710 43 - -
2472 1.38629 1.38629 1.38629 1.38629
2473 0.03797 3.98313 3.98313 1.46634 0.26236 1.09861 0.40547
2474 44 3.03775 2.56273 3.08783 0.18710 44 - -
2475 1.38629 1.38629 1.38629 1.38629
2476 0.03797 3.98313 3.98313 1.46634 0.26236 1.09861 0.40547
2477 45 2.91185 3.53609 0.12297 3.43546 45 - -
2478 1.38629 1.38629 1.38629 1.38629
2479 0.01916 3.96432 * 1.46634 0.26236 0.00000 *
2480 //
2481 HMMER3/b [3.0 | March 2010]
2482 NAME 3_End_Marchantiophyta_58S_end_twol_long
2483 LENG 45
2484 ALPH DNA
2485 RF no
2486 CS no
2487 MAP yes
2488 DATE Wed Jan 25 17:36:10 2012
2489 NSEQ 2
2490 EFFN 2.000000
2491 CKSUM 644527050
2492 STATS LOCAL MSV -7.6467 0.72740
2493 STATS LOCAL VITERBI -8.2973 0.72740
2494 STATS LOCAL FORWARD -3.3814 0.72740
2495 HMM A C G T
2496 m->m m->i m->d i->m i->i d->m d->d
2497 COMPO 1.82981 1.24206 1.12275 1.48995
2498 1.38629 1.38629 1.38629 1.38629
2499 0.04879 3.73767 3.73767 1.46634 0.26236 0.00000 *
2500 1 2.53331 3.02441 0.20344 2.88069 1 - -
2501 1.38629 1.38629 1.38629 1.38629
2502 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
2503 2 2.81865 0.23582 2.88868 2.35662 2 - -
2504 1.38629 1.38629 1.38629 1.38629
2505 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
2506 3 2.53331 3.02441 0.20344 2.88069 3 - -
2507 1.38629 1.38629 1.38629 1.38629
2508 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
2509 4 2.81865 0.23582 2.88868 2.35662 4 - -
2510 1.38629 1.38629 1.38629 1.38629
2511 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
2512 5 2.81865 0.23582 2.88868 2.35662 5 - -
2513 1.38629 1.38629 1.38629 1.38629
2514 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
2515 6 2.81865 0.23582 2.88868 2.35662 6 - -
2516 1.38629 1.38629 1.38629 1.38629
2517 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
2518 7 2.53331 3.02441 0.20344 2.88069 7 - -
2519 1.38629 1.38629 1.38629 1.38629
2520 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
2521 8 0.23862 2.84929 2.43386 2.70756 8 - -
2522 1.38629 1.38629 1.38629 1.38629
2523 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
2524 9 2.53331 3.02441 0.20344 2.88069 9 - -
2525 1.38629 1.38629 1.38629 1.38629
2526 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
2527 10 2.53331 3.02441 0.20344 2.88069 10 - -
2528 1.38629 1.38629 1.38629 1.38629
2529 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
2530 11 2.81865 0.23582 2.88868 2.35662 11 - -
2531 1.38629 1.38629 1.38629 1.38629
2532 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
2533 12 2.57915 2.25909 2.64442 0.28946 12 - -
2534 1.38629 1.38629 1.38629 1.38629
2535 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
2536 13 2.81865 0.23582 2.88868 2.35662 13 - -
2537 1.38629 1.38629 1.38629 1.38629
2538 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
2539 14 2.57915 2.25909 2.64442 0.28946 14 - -
2540 1.38629 1.38629 1.38629 1.38629
2541 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
2542 15 2.57915 2.25909 2.64442 0.28946 15 - -
2543 1.38629 1.38629 1.38629 1.38629
2544 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
2545 16 2.53331 3.02441 0.20344 2.88069 16 - -
2546 1.38629 1.38629 1.38629 1.38629
2547 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
2548 17 2.81865 0.23582 2.88868 2.35662 17 - -
2549 1.38629 1.38629 1.38629 1.38629
2550 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
2551 18 2.81865 0.23582 2.88868 2.35662 18 - -
2552 1.38629 1.38629 1.38629 1.38629
2553 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
2554 19 2.53331 3.02441 0.20344 2.88069 19 - -
2555 1.38629 1.38629 1.38629 1.38629
2556 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
2557 20 0.23862 2.84929 2.43386 2.70756 20 - -
2558 1.38629 1.38629 1.38629 1.38629
2559 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
2560 21 2.53331 3.02441 0.20344 2.88069 21 - -
2561 1.38629 1.38629 1.38629 1.38629
2562 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
2563 22 2.53331 3.02441 0.20344 2.88069 22 - -
2564 1.38629 1.38629 1.38629 1.38629
2565 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
2566 23 2.53331 3.02441 0.20344 2.88069 23 - -
2567 1.38629 1.38629 1.38629 1.38629
2568 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
2569 24 2.81865 0.23582 2.88868 2.35662 24 - -
2570 1.38629 1.38629 1.38629 1.38629
2571 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
2572 25 0.23862 2.84929 2.43386 2.70756 25 - -
2573 1.38629 1.38629 1.38629 1.38629
2574 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
2575 26 2.57915 2.25909 2.64442 0.28946 26 - -
2576 1.38629 1.38629 1.38629 1.38629
2577 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
2578 27 2.53331 3.02441 0.20344 2.88069 27 - -
2579 1.38629 1.38629 1.38629 1.38629
2580 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
2581 28 2.57915 2.25909 2.64442 0.28946 28 - -
2582 1.38629 1.38629 1.38629 1.38629
2583 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
2584 29 2.81865 0.23582 2.88868 2.35662 29 - -
2585 1.38629 1.38629 1.38629 1.38629
2586 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
2587 30 2.57915 2.25909 2.64442 0.28946 30 - -
2588 1.38629 1.38629 1.38629 1.38629
2589 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
2590 31 2.53331 3.02441 0.20344 2.88069 31 - -
2591 1.38629 1.38629 1.38629 1.38629
2592 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
2593 32 2.57915 2.25909 2.64442 0.28946 32 - -
2594 1.38629 1.38629 1.38629 1.38629
2595 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
2596 33 2.81865 0.23582 2.88868 2.35662 33 - -
2597 1.38629 1.38629 1.38629 1.38629
2598 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
2599 34 2.57915 2.25909 2.64442 0.28946 34 - -
2600 1.38629 1.38629 1.38629 1.38629
2601 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
2602 35 2.53331 3.02441 0.20344 2.88069 35 - -
2603 1.38629 1.38629 1.38629 1.38629
2604 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
2605 36 0.23862 2.84929 2.43386 2.70756 36 - -
2606 1.38629 1.38629 1.38629 1.38629
2607 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
2608 37 2.53331 3.02441 0.20344 2.88069 37 - -
2609 1.38629 1.38629 1.38629 1.38629
2610 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
2611 38 2.81865 0.23582 2.88868 2.35662 38 - -
2612 1.38629 1.38629 1.38629 1.38629
2613 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
2614 39 2.53331 3.02441 0.20344 2.88069 39 - -
2615 1.38629 1.38629 1.38629 1.38629
2616 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
2617 40 2.57915 2.25909 2.64442 0.28946 40 - -
2618 1.38629 1.38629 1.38629 1.38629
2619 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
2620 41 2.81865 0.23582 2.88868 2.35662 41 - -
2621 1.38629 1.38629 1.38629 1.38629
2622 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
2623 42 2.81865 0.23582 2.88868 2.35662 42 - -
2624 1.38629 1.38629 1.38629 1.38629
2625 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
2626 43 0.23862 2.84929 2.43386 2.70756 43 - -
2627 1.38629 1.38629 1.38629 1.38629
2628 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
2629 44 2.57915 2.25909 2.64442 0.28946 44 - -
2630 1.38629 1.38629 1.38629 1.38629
2631 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
2632 45 2.53331 3.02441 0.20344 2.88069 45 - -
2633 1.38629 1.38629 1.38629 1.38629
2634 0.02469 3.71357 * 1.46634 0.26236 0.00000 *
2635 //
2636 HMMER3/b [3.0 | March 2010]
2637 NAME 3_End_Marchantiophyta_58S_end_twom_long
2638 LENG 45
2639 ALPH DNA
2640 RF no
2641 CS no
2642 MAP yes
2643 DATE Wed Jan 25 17:36:19 2012
2644 NSEQ 5
2645 EFFN 3.168945
2646 CKSUM 3208013427
2647 STATS LOCAL MSV -8.2354 0.71934
2648 STATS LOCAL VITERBI -7.7805 0.71934
2649 STATS LOCAL FORWARD -4.1144 0.71934
2650 HMM A C G T
2651 m->m m->i m->d i->m i->i d->m d->d
2652 COMPO 1.82194 1.26345 1.14443 1.43882
2653 1.38629 1.38629 1.38629 1.38629
2654 0.03796 3.98322 3.98322 1.46634 0.26236 0.00000 *
2655 1 2.91196 3.53626 0.12295 3.43565 1 - -
2656 1.38629 1.38629 1.38629 1.38629
2657 0.03796 3.98322 3.98322 1.46634 0.26236 1.09861 0.40547
2658 2 3.37482 0.13738 3.42671 2.78637 2 - -
2659 1.38629 1.38629 1.38629 1.38629
2660 0.03796 3.98322 3.98322 1.46634 0.26236 1.09861 0.40547
2661 3 2.91196 3.53626 0.12295 3.43565 3 - -
2662 1.38629 1.38629 1.38629 1.38629
2663 0.03796 3.98322 3.98322 1.46634 0.26236 1.09861 0.40547
2664 4 3.37482 0.13738 3.42671 2.78637 4 - -
2665 1.38629 1.38629 1.38629 1.38629
2666 0.03796 3.98322 3.98322 1.46634 0.26236 1.09861 0.40547
2667 5 3.37482 0.13738 3.42671 2.78637 5 - -
2668 1.38629 1.38629 1.38629 1.38629
2669 0.03796 3.98322 3.98322 1.46634 0.26236 1.09861 0.40547
2670 6 3.37482 0.13738 3.42671 2.78637 6 - -
2671 1.38629 1.38629 1.38629 1.38629
2672 0.03796 3.98322 3.98322 1.46634 0.26236 1.09861 0.40547
2673 7 2.91196 3.53626 0.12295 3.43565 7 - -
2674 1.38629 1.38629 1.38629 1.38629
2675 0.03796 3.98322 3.98322 1.46634 0.26236 1.09861 0.40547
2676 8 0.14875 3.32976 2.76899 3.22669 8 - -
2677 1.38629 1.38629 1.38629 1.38629
2678 0.03796 3.98322 3.98322 1.46634 0.26236 1.09861 0.40547
2679 9 2.91196 3.53626 0.12295 3.43565 9 - -
2680 1.38629 1.38629 1.38629 1.38629
2681 0.03796 3.98322 3.98322 1.46634 0.26236 1.09861 0.40547
2682 10 2.91196 3.53626 0.12295 3.43565 10 - -
2683 1.38629 1.38629 1.38629 1.38629
2684 0.03796 3.98322 3.98322 1.46634 0.26236 1.09861 0.40547
2685 11 3.37482 0.13738 3.42671 2.78637 11 - -
2686 1.38629 1.38629 1.38629 1.38629
2687 0.03796 3.98322 3.98322 1.46634 0.26236 1.09861 0.40547
2688 12 3.03791 2.56284 3.08799 0.18707 12 - -
2689 1.38629 1.38629 1.38629 1.38629
2690 0.03796 3.98322 3.98322 1.46634 0.26236 1.09861 0.40547
2691 13 3.03791 2.56284 3.08799 0.18707 13 - -
2692 1.38629 1.38629 1.38629 1.38629
2693 0.03796 3.98322 3.98322 1.46634 0.26236 1.09861 0.40547
2694 14 3.03791 2.56284 3.08799 0.18707 14 - -
2695 1.38629 1.38629 1.38629 1.38629
2696 0.03796 3.98322 3.98322 1.46634 0.26236 1.09861 0.40547
2697 15 3.03791 2.56284 3.08799 0.18707 15 - -
2698 1.38629 1.38629 1.38629 1.38629
2699 0.03796 3.98322 3.98322 1.46634 0.26236 1.09861 0.40547
2700 16 0.14875 3.32976 2.76899 3.22669 16 - -
2701 1.38629 1.38629 1.38629 1.38629
2702 0.03796 3.98322 3.98322 1.46634 0.26236 1.09861 0.40547
2703 17 3.37482 0.13738 3.42671 2.78637 17 - -
2704 1.38629 1.38629 1.38629 1.38629
2705 0.03796 3.98322 3.98322 1.46634 0.26236 1.09861 0.40547
2706 18 3.37482 0.13738 3.42671 2.78637 18 - -
2707 1.38629 1.38629 1.38629 1.38629
2708 0.03796 3.98322 3.98322 1.46634 0.26236 1.09861 0.40547
2709 19 2.91196 3.53626 0.12295 3.43565 19 - -
2710 1.38629 1.38629 1.38629 1.38629
2711 0.03796 3.98322 3.98322 1.46634 0.26236 1.09861 0.40547
2712 20 0.14875 3.32976 2.76899 3.22669 20 - -
2713 1.38629 1.38629 1.38629 1.38629
2714 0.03796 3.98322 3.98322 1.46634 0.26236 1.09861 0.40547
2715 21 2.91196 3.53626 0.12295 3.43565 21 - -
2716 1.38629 1.38629 1.38629 1.38629
2717 0.03796 3.98322 3.98322 1.46634 0.26236 1.09861 0.40547
2718 22 2.91196 3.53626 0.12295 3.43565 22 - -
2719 1.38629 1.38629 1.38629 1.38629
2720 0.03796 3.98322 3.98322 1.46634 0.26236 1.09861 0.40547
2721 23 2.91196 3.53626 0.12295 3.43565 23 - -
2722 1.38629 1.38629 1.38629 1.38629
2723 0.03796 3.98322 3.98322 1.46634 0.26236 1.09861 0.40547
2724 24 3.37482 0.13738 3.42671 2.78637 24 - -
2725 1.38629 1.38629 1.38629 1.38629
2726 0.03796 3.98322 3.98322 1.46634 0.26236 1.09861 0.40547
2727 25 0.14875 3.32976 2.76899 3.22669 25 - -
2728 1.38629 1.38629 1.38629 1.38629
2729 0.03796 3.98322 3.98322 1.46634 0.26236 1.09861 0.40547
2730 26 3.03791 2.56284 3.08799 0.18707 26 - -
2731 1.38629 1.38629 1.38629 1.38629
2732 0.03796 3.98322 3.98322 1.46634 0.26236 1.09861 0.40547
2733 27 2.91196 3.53626 0.12295 3.43565 27 - -
2734 1.38629 1.38629 1.38629 1.38629
2735 0.03796 3.98322 3.98322 1.46634 0.26236 1.09861 0.40547
2736 28 3.03791 2.56284 3.08799 0.18707 28 - -
2737 1.38629 1.38629 1.38629 1.38629
2738 0.03796 3.98322 3.98322 1.46634 0.26236 1.09861 0.40547
2739 29 3.37482 0.13738 3.42671 2.78637 29 - -
2740 1.38629 1.38629 1.38629 1.38629
2741 0.03796 3.98322 3.98322 1.46634 0.26236 1.09861 0.40547
2742 30 3.03791 2.56284 3.08799 0.18707 30 - -
2743 1.38629 1.38629 1.38629 1.38629
2744 0.03796 3.98322 3.98322 1.46634 0.26236 1.09861 0.40547
2745 31 2.91196 3.53626 0.12295 3.43565 31 - -
2746 1.38629 1.38629 1.38629 1.38629
2747 0.03796 3.98322 3.98322 1.46634 0.26236 1.09861 0.40547
2748 32 3.03791 2.56284 3.08799 0.18707 32 - -
2749 1.38629 1.38629 1.38629 1.38629
2750 0.03796 3.98322 3.98322 1.46634 0.26236 1.09861 0.40547
2751 33 3.37482 0.13738 3.42671 2.78637 33 - -
2752 1.38629 1.38629 1.38629 1.38629
2753 0.03796 3.98322 3.98322 1.46634 0.26236 1.09861 0.40547
2754 34 3.03791 2.56284 3.08799 0.18707 34 - -
2755 1.38629 1.38629 1.38629 1.38629
2756 0.03796 3.98322 3.98322 1.46634 0.26236 1.09861 0.40547
2757 35 2.91196 3.53626 0.12295 3.43565 35 - -
2758 1.38629 1.38629 1.38629 1.38629
2759 0.03796 3.98322 3.98322 1.46634 0.26236 1.09861 0.40547
2760 36 0.14875 3.32976 2.76899 3.22669 36 - -
2761 1.38629 1.38629 1.38629 1.38629
2762 0.03796 3.98322 3.98322 1.46634 0.26236 1.09861 0.40547
2763 37 2.91196 3.53626 0.12295 3.43565 37 - -
2764 1.38629 1.38629 1.38629 1.38629
2765 0.03796 3.98322 3.98322 1.46634 0.26236 1.09861 0.40547
2766 38 3.37482 0.13738 3.42671 2.78637 38 - -
2767 1.38629 1.38629 1.38629 1.38629
2768 0.03796 3.98322 3.98322 1.46634 0.26236 1.09861 0.40547
2769 39 2.91196 3.53626 0.12295 3.43565 39 - -
2770 1.38629 1.38629 1.38629 1.38629
2771 0.03796 3.98322 3.98322 1.46634 0.26236 1.09861 0.40547
2772 40 3.03791 2.56284 3.08799 0.18707 40 - -
2773 1.38629 1.38629 1.38629 1.38629
2774 0.03796 3.98322 3.98322 1.46634 0.26236 1.09861 0.40547
2775 41 3.37482 0.13738 3.42671 2.78637 41 - -
2776 1.38629 1.38629 1.38629 1.38629
2777 0.03796 3.98322 3.98322 1.46634 0.26236 1.09861 0.40547
2778 42 3.37482 0.13738 3.42671 2.78637 42 - -
2779 1.38629 1.38629 1.38629 1.38629
2780 0.03796 3.98322 3.98322 1.46634 0.26236 1.09861 0.40547
2781 43 0.14875 3.32976 2.76899 3.22669 43 - -
2782 1.38629 1.38629 1.38629 1.38629
2783 0.03796 3.98322 3.98322 1.46634 0.26236 1.09861 0.40547
2784 44 3.03791 2.56284 3.08799 0.18707 44 - -
2785 1.38629 1.38629 1.38629 1.38629
2786 0.03796 3.98322 3.98322 1.46634 0.26236 1.09861 0.40547
2787 45 2.91196 3.53626 0.12295 3.43565 45 - -
2788 1.38629 1.38629 1.38629 1.38629
2789 0.01916 3.96442 * 1.46634 0.26236 0.00000 *
2790 //
2791 HMMER3/b [3.0 | March 2010]
2792 NAME 3_End_Marchantiophyta_58S_end_twon_long
2793 LENG 45
2794 ALPH DNA
2795 RF no
2796 CS no
2797 MAP yes
2798 DATE Wed Jan 25 17:36:26 2012
2799 NSEQ 3
2800 EFFN 3.000000
2801 CKSUM 1433831041
2802 STATS LOCAL MSV -8.1598 0.71994
2803 STATS LOCAL VITERBI -7.7732 0.71994
2804 STATS LOCAL FORWARD -4.1128 0.71994
2805 HMM A C G T
2806 m->m m->i m->d i->m i->i d->m d->d
2807 COMPO 1.81554 1.21056 1.14731 1.50629
2808 1.38629 1.38629 1.38629 1.38629
2809 0.03922 3.95124 3.95124 1.46634 0.26236 0.00000 *
2810 1 2.86982 3.47591 0.13017 3.36931 1 - -
2811 1.38629 1.38629 1.38629 1.38629
2812 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
2813 2 3.30705 0.14631 3.36166 2.73626 2 - -
2814 1.38629 1.38629 1.38629 1.38629
2815 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
2816 3 2.86982 3.47591 0.13017 3.36931 3 - -
2817 1.38629 1.38629 1.38629 1.38629
2818 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
2819 4 3.30705 0.14631 3.36166 2.73626 4 - -
2820 1.38629 1.38629 1.38629 1.38629
2821 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
2822 5 3.30705 0.14631 3.36166 2.73626 5 - -
2823 1.38629 1.38629 1.38629 1.38629
2824 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
2825 6 3.30705 0.14631 3.36166 2.73626 6 - -
2826 1.38629 1.38629 1.38629 1.38629
2827 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
2828 7 2.86982 3.47591 0.13017 3.36931 7 - -
2829 1.38629 1.38629 1.38629 1.38629
2830 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
2831 8 0.15719 3.27118 2.73043 3.16274 8 - -
2832 1.38629 1.38629 1.38629 1.38629
2833 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
2834 9 2.86982 3.47591 0.13017 3.36931 9 - -
2835 1.38629 1.38629 1.38629 1.38629
2836 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
2837 10 2.86982 3.47591 0.13017 3.36931 10 - -
2838 1.38629 1.38629 1.38629 1.38629
2839 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
2840 11 3.30705 0.14631 3.36166 2.73626 11 - -
2841 1.38629 1.38629 1.38629 1.38629
2842 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
2843 12 2.97980 2.52563 3.03204 0.19727 12 - -
2844 1.38629 1.38629 1.38629 1.38629
2845 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
2846 13 3.30705 0.14631 3.36166 2.73626 13 - -
2847 1.38629 1.38629 1.38629 1.38629
2848 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
2849 14 2.97980 2.52563 3.03204 0.19727 14 - -
2850 1.38629 1.38629 1.38629 1.38629
2851 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
2852 15 2.97980 2.52563 3.03204 0.19727 15 - -
2853 1.38629 1.38629 1.38629 1.38629
2854 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
2855 16 0.15719 3.27118 2.73043 3.16274 16 - -
2856 1.38629 1.38629 1.38629 1.38629
2857 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
2858 17 3.30705 0.14631 3.36166 2.73626 17 - -
2859 1.38629 1.38629 1.38629 1.38629
2860 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
2861 18 3.30705 0.14631 3.36166 2.73626 18 - -
2862 1.38629 1.38629 1.38629 1.38629
2863 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
2864 19 2.86982 3.47591 0.13017 3.36931 19 - -
2865 1.38629 1.38629 1.38629 1.38629
2866 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
2867 20 0.15719 3.27118 2.73043 3.16274 20 - -
2868 1.38629 1.38629 1.38629 1.38629
2869 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
2870 21 2.86982 3.47591 0.13017 3.36931 21 - -
2871 1.38629 1.38629 1.38629 1.38629
2872 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
2873 22 2.86982 3.47591 0.13017 3.36931 22 - -
2874 1.38629 1.38629 1.38629 1.38629
2875 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
2876 23 2.86982 3.47591 0.13017 3.36931 23 - -
2877 1.38629 1.38629 1.38629 1.38629
2878 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
2879 24 3.30705 0.14631 3.36166 2.73626 24 - -
2880 1.38629 1.38629 1.38629 1.38629
2881 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
2882 25 0.15719 3.27118 2.73043 3.16274 25 - -
2883 1.38629 1.38629 1.38629 1.38629
2884 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
2885 26 2.97980 2.52563 3.03204 0.19727 26 - -
2886 1.38629 1.38629 1.38629 1.38629
2887 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
2888 27 2.86982 3.47591 0.13017 3.36931 27 - -
2889 1.38629 1.38629 1.38629 1.38629
2890 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
2891 28 2.97980 2.52563 3.03204 0.19727 28 - -
2892 1.38629 1.38629 1.38629 1.38629
2893 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
2894 29 3.30705 0.14631 3.36166 2.73626 29 - -
2895 1.38629 1.38629 1.38629 1.38629
2896 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
2897 30 2.97980 2.52563 3.03204 0.19727 30 - -
2898 1.38629 1.38629 1.38629 1.38629
2899 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
2900 31 2.86982 3.47591 0.13017 3.36931 31 - -
2901 1.38629 1.38629 1.38629 1.38629
2902 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
2903 32 2.97980 2.52563 3.03204 0.19727 32 - -
2904 1.38629 1.38629 1.38629 1.38629
2905 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
2906 33 3.30705 0.14631 3.36166 2.73626 33 - -
2907 1.38629 1.38629 1.38629 1.38629
2908 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
2909 34 2.97980 2.52563 3.03204 0.19727 34 - -
2910 1.38629 1.38629 1.38629 1.38629
2911 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
2912 35 2.86982 3.47591 0.13017 3.36931 35 - -
2913 1.38629 1.38629 1.38629 1.38629
2914 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
2915 36 0.15719 3.27118 2.73043 3.16274 36 - -
2916 1.38629 1.38629 1.38629 1.38629
2917 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
2918 37 2.86982 3.47591 0.13017 3.36931 37 - -
2919 1.38629 1.38629 1.38629 1.38629
2920 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
2921 38 3.30705 0.14631 3.36166 2.73626 38 - -
2922 1.38629 1.38629 1.38629 1.38629
2923 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
2924 39 2.86982 3.47591 0.13017 3.36931 39 - -
2925 1.38629 1.38629 1.38629 1.38629
2926 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
2927 40 2.97980 2.52563 3.03204 0.19727 40 - -
2928 1.38629 1.38629 1.38629 1.38629
2929 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
2930 41 3.30705 0.14631 3.36166 2.73626 41 - -
2931 1.38629 1.38629 1.38629 1.38629
2932 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
2933 42 3.30705 0.14631 3.36166 2.73626 42 - -
2934 1.38629 1.38629 1.38629 1.38629
2935 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
2936 43 0.15719 3.27118 2.73043 3.16274 43 - -
2937 1.38629 1.38629 1.38629 1.38629
2938 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
2939 44 2.97980 2.52563 3.03204 0.19727 44 - -
2940 1.38629 1.38629 1.38629 1.38629
2941 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
2942 45 2.86982 3.47591 0.13017 3.36931 45 - -
2943 1.38629 1.38629 1.38629 1.38629
2944 0.01980 3.93183 * 1.46634 0.26236 0.00000 *
2945 //
2946 HMMER3/b [3.0 | March 2010]
2947 NAME 3_End_Marchantiophyta_58S_end_twoo_long
2948 LENG 45
2949 ALPH DNA
2950 RF no
2951 CS no
2952 MAP yes
2953 DATE Wed Jan 25 17:36:34 2012
2954 NSEQ 2
2955 EFFN 2.000000
2956 CKSUM 163887748
2957 STATS LOCAL MSV -7.5850 0.72714
2958 STATS LOCAL VITERBI -8.2317 0.72714
2959 STATS LOCAL FORWARD -3.5245 0.72714
2960 HMM A C G T
2961 m->m m->i m->d i->m i->i d->m d->d
2962 COMPO 1.82690 1.29897 1.03409 1.55719
2963 1.38629 1.38629 1.38629 1.38629
2964 0.04879 3.73767 3.73767 1.46634 0.26236 0.00000 *
2965 1 2.53331 3.02441 0.20344 2.88069 1 - -
2966 1.38629 1.38629 1.38629 1.38629
2967 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
2968 2 2.81865 0.23582 2.88868 2.35662 2 - -
2969 1.38629 1.38629 1.38629 1.38629
2970 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
2971 3 2.53331 3.02441 0.20344 2.88069 3 - -
2972 1.38629 1.38629 1.38629 1.38629
2973 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
2974 4 2.81865 0.23582 2.88868 2.35662 4 - -
2975 1.38629 1.38629 1.38629 1.38629
2976 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
2977 5 2.81865 0.23582 2.88868 2.35662 5 - -
2978 1.38629 1.38629 1.38629 1.38629
2979 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
2980 6 2.81865 0.23582 2.88868 2.35662 6 - -
2981 1.38629 1.38629 1.38629 1.38629
2982 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
2983 7 2.53331 3.02441 0.20344 2.88069 7 - -
2984 1.38629 1.38629 1.38629 1.38629
2985 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
2986 8 0.23862 2.84929 2.43386 2.70756 8 - -
2987 1.38629 1.38629 1.38629 1.38629
2988 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
2989 9 2.53331 3.02441 0.20344 2.88069 9 - -
2990 1.38629 1.38629 1.38629 1.38629
2991 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
2992 10 2.53331 3.02441 0.20344 2.88069 10 - -
2993 1.38629 1.38629 1.38629 1.38629
2994 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
2995 11 2.81865 0.23582 2.88868 2.35662 11 - -
2996 1.38629 1.38629 1.38629 1.38629
2997 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
2998 12 2.57915 2.25909 2.64442 0.28946 12 - -
2999 1.38629 1.38629 1.38629 1.38629
3000 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
3001 13 2.81865 0.23582 2.88868 2.35662 13 - -
3002 1.38629 1.38629 1.38629 1.38629
3003 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
3004 14 2.53331 3.02441 0.20344 2.88069 14 - -
3005 1.38629 1.38629 1.38629 1.38629
3006 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
3007 15 2.57915 2.25909 2.64442 0.28946 15 - -
3008 1.38629 1.38629 1.38629 1.38629
3009 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
3010 16 0.23862 2.84929 2.43386 2.70756 16 - -
3011 1.38629 1.38629 1.38629 1.38629
3012 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
3013 17 2.81865 0.23582 2.88868 2.35662 17 - -
3014 1.38629 1.38629 1.38629 1.38629
3015 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
3016 18 2.81865 0.23582 2.88868 2.35662 18 - -
3017 1.38629 1.38629 1.38629 1.38629
3018 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
3019 19 2.53331 3.02441 0.20344 2.88069 19 - -
3020 1.38629 1.38629 1.38629 1.38629
3021 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
3022 20 0.23862 2.84929 2.43386 2.70756 20 - -
3023 1.38629 1.38629 1.38629 1.38629
3024 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
3025 21 2.53331 3.02441 0.20344 2.88069 21 - -
3026 1.38629 1.38629 1.38629 1.38629
3027 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
3028 22 2.53331 3.02441 0.20344 2.88069 22 - -
3029 1.38629 1.38629 1.38629 1.38629
3030 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
3031 23 2.53331 3.02441 0.20344 2.88069 23 - -
3032 1.38629 1.38629 1.38629 1.38629
3033 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
3034 24 2.81865 0.23582 2.88868 2.35662 24 - -
3035 1.38629 1.38629 1.38629 1.38629
3036 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
3037 25 0.23862 2.84929 2.43386 2.70756 25 - -
3038 1.38629 1.38629 1.38629 1.38629
3039 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
3040 26 2.57915 2.25909 2.64442 0.28946 26 - -
3041 1.38629 1.38629 1.38629 1.38629
3042 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
3043 27 2.53331 3.02441 0.20344 2.88069 27 - -
3044 1.38629 1.38629 1.38629 1.38629
3045 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
3046 28 2.57915 2.25909 2.64442 0.28946 28 - -
3047 1.38629 1.38629 1.38629 1.38629
3048 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
3049 29 2.81865 0.23582 2.88868 2.35662 29 - -
3050 1.38629 1.38629 1.38629 1.38629
3051 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
3052 30 2.57915 2.25909 2.64442 0.28946 30 - -
3053 1.38629 1.38629 1.38629 1.38629
3054 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
3055 31 2.53331 3.02441 0.20344 2.88069 31 - -
3056 1.38629 1.38629 1.38629 1.38629
3057 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
3058 32 2.57915 2.25909 2.64442 0.28946 32 - -
3059 1.38629 1.38629 1.38629 1.38629
3060 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
3061 33 2.81865 0.23582 2.88868 2.35662 33 - -
3062 1.38629 1.38629 1.38629 1.38629
3063 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
3064 34 2.57915 2.25909 2.64442 0.28946 34 - -
3065 1.38629 1.38629 1.38629 1.38629
3066 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
3067 35 2.53331 3.02441 0.20344 2.88069 35 - -
3068 1.38629 1.38629 1.38629 1.38629
3069 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
3070 36 0.23862 2.84929 2.43386 2.70756 36 - -
3071 1.38629 1.38629 1.38629 1.38629
3072 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
3073 37 2.53331 3.02441 0.20344 2.88069 37 - -
3074 1.38629 1.38629 1.38629 1.38629
3075 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
3076 38 2.81865 0.23582 2.88868 2.35662 38 - -
3077 1.38629 1.38629 1.38629 1.38629
3078 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
3079 39 2.53331 3.02441 0.20344 2.88069 39 - -
3080 1.38629 1.38629 1.38629 1.38629
3081 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
3082 40 2.57915 2.25909 2.64442 0.28946 40 - -
3083 1.38629 1.38629 1.38629 1.38629
3084 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
3085 41 2.81865 0.23582 2.88868 2.35662 41 - -
3086 1.38629 1.38629 1.38629 1.38629
3087 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
3088 42 2.53331 3.02441 0.20344 2.88069 42 - -
3089 1.38629 1.38629 1.38629 1.38629
3090 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
3091 43 2.53331 3.02441 0.20344 2.88069 43 - -
3092 1.38629 1.38629 1.38629 1.38629
3093 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
3094 44 2.57915 2.25909 2.64442 0.28946 44 - -
3095 1.38629 1.38629 1.38629 1.38629
3096 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
3097 45 2.53331 3.02441 0.20344 2.88069 45 - -
3098 1.38629 1.38629 1.38629 1.38629
3099 0.02469 3.71357 * 1.46634 0.26236 0.00000 *
3100 //
3101 HMMER3/b [3.0 | March 2010]
3102 NAME 3_End_Marchantiophyta_58S_end_twop_long
3103 LENG 45
3104 ALPH DNA
3105 RF no
3106 CS no
3107 MAP yes
3108 DATE Wed Jan 25 17:36:42 2012
3109 NSEQ 3
3110 EFFN 3.000000
3111 CKSUM 1237938417
3112 STATS LOCAL MSV -7.9602 0.71991
3113 STATS LOCAL VITERBI -7.6581 0.71991
3114 STATS LOCAL FORWARD -4.0925 0.71991
3115 HMM A C G T
3116 m->m m->i m->d i->m i->i d->m d->d
3117 COMPO 1.81297 1.27097 1.09445 1.50712
3118 1.38629 1.38629 1.38629 1.38629
3119 0.03922 3.95124 3.95124 1.46634 0.26236 0.00000 *
3120 1 2.86982 3.47591 0.13017 3.36931 1 - -
3121 1.38629 1.38629 1.38629 1.38629
3122 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
3123 2 2.97980 2.52563 3.03204 0.19727 2 - -
3124 1.38629 1.38629 1.38629 1.38629
3125 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
3126 3 2.86982 3.47591 0.13017 3.36931 3 - -
3127 1.38629 1.38629 1.38629 1.38629
3128 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
3129 4 3.30705 0.14631 3.36166 2.73626 4 - -
3130 1.38629 1.38629 1.38629 1.38629
3131 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
3132 5 3.30705 0.14631 3.36166 2.73626 5 - -
3133 1.38629 1.38629 1.38629 1.38629
3134 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
3135 6 2.97980 2.52563 3.03204 0.19727 6 - -
3136 1.38629 1.38629 1.38629 1.38629
3137 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
3138 7 2.86982 3.47591 0.13017 3.36931 7 - -
3139 1.38629 1.38629 1.38629 1.38629
3140 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
3141 8 0.15719 3.27118 2.73043 3.16274 8 - -
3142 1.38629 1.38629 1.38629 1.38629
3143 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
3144 9 2.86982 3.47591 0.13017 3.36931 9 - -
3145 1.38629 1.38629 1.38629 1.38629
3146 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
3147 10 2.86982 3.47591 0.13017 3.36931 10 - -
3148 1.38629 1.38629 1.38629 1.38629
3149 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
3150 11 3.30705 0.14631 3.36166 2.73626 11 - -
3151 1.38629 1.38629 1.38629 1.38629
3152 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
3153 12 2.97980 2.52563 3.03204 0.19727 12 - -
3154 1.38629 1.38629 1.38629 1.38629
3155 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
3156 13 3.30705 0.14631 3.36166 2.73626 13 - -
3157 1.38629 1.38629 1.38629 1.38629
3158 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
3159 14 2.86982 3.47591 0.13017 3.36931 14 - -
3160 1.38629 1.38629 1.38629 1.38629
3161 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
3162 15 2.97980 2.52563 3.03204 0.19727 15 - -
3163 1.38629 1.38629 1.38629 1.38629
3164 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
3165 16 0.15719 3.27118 2.73043 3.16274 16 - -
3166 1.38629 1.38629 1.38629 1.38629
3167 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
3168 17 3.30705 0.14631 3.36166 2.73626 17 - -
3169 1.38629 1.38629 1.38629 1.38629
3170 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
3171 18 3.30705 0.14631 3.36166 2.73626 18 - -
3172 1.38629 1.38629 1.38629 1.38629
3173 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
3174 19 2.86982 3.47591 0.13017 3.36931 19 - -
3175 1.38629 1.38629 1.38629 1.38629
3176 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
3177 20 0.15719 3.27118 2.73043 3.16274 20 - -
3178 1.38629 1.38629 1.38629 1.38629
3179 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
3180 21 2.86982 3.47591 0.13017 3.36931 21 - -
3181 1.38629 1.38629 1.38629 1.38629
3182 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
3183 22 2.86982 3.47591 0.13017 3.36931 22 - -
3184 1.38629 1.38629 1.38629 1.38629
3185 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
3186 23 2.86982 3.47591 0.13017 3.36931 23 - -
3187 1.38629 1.38629 1.38629 1.38629
3188 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
3189 24 3.30705 0.14631 3.36166 2.73626 24 - -
3190 1.38629 1.38629 1.38629 1.38629
3191 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
3192 25 0.15719 3.27118 2.73043 3.16274 25 - -
3193 1.38629 1.38629 1.38629 1.38629
3194 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
3195 26 2.97980 2.52563 3.03204 0.19727 26 - -
3196 1.38629 1.38629 1.38629 1.38629
3197 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
3198 27 2.86982 3.47591 0.13017 3.36931 27 - -
3199 1.38629 1.38629 1.38629 1.38629
3200 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
3201 28 3.30705 0.14631 3.36166 2.73626 28 - -
3202 1.38629 1.38629 1.38629 1.38629
3203 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
3204 29 3.30705 0.14631 3.36166 2.73626 29 - -
3205 1.38629 1.38629 1.38629 1.38629
3206 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
3207 30 2.97980 2.52563 3.03204 0.19727 30 - -
3208 1.38629 1.38629 1.38629 1.38629
3209 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
3210 31 2.86982 3.47591 0.13017 3.36931 31 - -
3211 1.38629 1.38629 1.38629 1.38629
3212 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
3213 32 2.97980 2.52563 3.03204 0.19727 32 - -
3214 1.38629 1.38629 1.38629 1.38629
3215 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
3216 33 3.30705 0.14631 3.36166 2.73626 33 - -
3217 1.38629 1.38629 1.38629 1.38629
3218 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
3219 34 2.97980 2.52563 3.03204 0.19727 34 - -
3220 1.38629 1.38629 1.38629 1.38629
3221 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
3222 35 2.86982 3.47591 0.13017 3.36931 35 - -
3223 1.38629 1.38629 1.38629 1.38629
3224 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
3225 36 0.15719 3.27118 2.73043 3.16274 36 - -
3226 1.38629 1.38629 1.38629 1.38629
3227 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
3228 37 2.86982 3.47591 0.13017 3.36931 37 - -
3229 1.38629 1.38629 1.38629 1.38629
3230 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
3231 38 3.30705 0.14631 3.36166 2.73626 38 - -
3232 1.38629 1.38629 1.38629 1.38629
3233 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
3234 39 2.86982 3.47591 0.13017 3.36931 39 - -
3235 1.38629 1.38629 1.38629 1.38629
3236 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
3237 40 2.97980 2.52563 3.03204 0.19727 40 - -
3238 1.38629 1.38629 1.38629 1.38629
3239 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
3240 41 3.30705 0.14631 3.36166 2.73626 41 - -
3241 1.38629 1.38629 1.38629 1.38629
3242 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
3243 42 3.30705 0.14631 3.36166 2.73626 42 - -
3244 1.38629 1.38629 1.38629 1.38629
3245 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
3246 43 0.15719 3.27118 2.73043 3.16274 43 - -
3247 1.38629 1.38629 1.38629 1.38629
3248 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
3249 44 2.97980 2.52563 3.03204 0.19727 44 - -
3250 1.38629 1.38629 1.38629 1.38629
3251 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
3252 45 2.86982 3.47591 0.13017 3.36931 45 - -
3253 1.38629 1.38629 1.38629 1.38629
3254 0.01980 3.93183 * 1.46634 0.26236 0.00000 *
3255 //
3256 HMMER3/b [3.0 | March 2010]
3257 NAME 3_End_Marchantiophyta_58S_end_twoq_long
3258 LENG 45
3259 ALPH DNA
3260 RF no
3261 CS no
3262 MAP yes
3263 DATE Wed Jan 25 17:36:51 2012
3264 NSEQ 2
3265 EFFN 2.000000
3266 CKSUM 1217683786
3267 STATS LOCAL MSV -7.4909 0.72753
3268 STATS LOCAL VITERBI -8.2720 0.72753
3269 STATS LOCAL FORWARD -3.6887 0.72753
3270 HMM A C G T
3271 m->m m->i m->d i->m i->i d->m d->d
3272 COMPO 1.74092 1.34564 1.11983 1.43577
3273 1.38629 1.38629 1.38629 1.38629
3274 0.04879 3.73767 3.73767 1.46634 0.26236 0.00000 *
3275 1 2.53331 3.02441 0.20344 2.88069 1 - -
3276 1.38629 1.38629 1.38629 1.38629
3277 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
3278 2 2.81865 0.23582 2.88868 2.35662 2 - -
3279 1.38629 1.38629 1.38629 1.38629
3280 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
3281 3 2.53331 3.02441 0.20344 2.88069 3 - -
3282 1.38629 1.38629 1.38629 1.38629
3283 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
3284 4 2.81865 0.23582 2.88868 2.35662 4 - -
3285 1.38629 1.38629 1.38629 1.38629
3286 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
3287 5 2.81865 0.23582 2.88868 2.35662 5 - -
3288 1.38629 1.38629 1.38629 1.38629
3289 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
3290 6 2.81865 0.23582 2.88868 2.35662 6 - -
3291 1.38629 1.38629 1.38629 1.38629
3292 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
3293 7 2.53331 3.02441 0.20344 2.88069 7 - -
3294 1.38629 1.38629 1.38629 1.38629
3295 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
3296 8 0.23862 2.84929 2.43386 2.70756 8 - -
3297 1.38629 1.38629 1.38629 1.38629
3298 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
3299 9 2.53331 3.02441 0.20344 2.88069 9 - -
3300 1.38629 1.38629 1.38629 1.38629
3301 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
3302 10 2.53331 3.02441 0.20344 2.88069 10 - -
3303 1.38629 1.38629 1.38629 1.38629
3304 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
3305 11 2.57915 2.25909 2.64442 0.28946 11 - -
3306 1.38629 1.38629 1.38629 1.38629
3307 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
3308 12 2.57915 2.25909 2.64442 0.28946 12 - -
3309 1.38629 1.38629 1.38629 1.38629
3310 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
3311 13 2.81865 0.23582 2.88868 2.35662 13 - -
3312 1.38629 1.38629 1.38629 1.38629
3313 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
3314 14 2.53331 3.02441 0.20344 2.88069 14 - -
3315 1.38629 1.38629 1.38629 1.38629
3316 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
3317 15 2.57915 2.25909 2.64442 0.28946 15 - -
3318 1.38629 1.38629 1.38629 1.38629
3319 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
3320 16 0.23862 2.84929 2.43386 2.70756 16 - -
3321 1.38629 1.38629 1.38629 1.38629
3322 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
3323 17 2.81865 0.23582 2.88868 2.35662 17 - -
3324 1.38629 1.38629 1.38629 1.38629
3325 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
3326 18 2.81865 0.23582 2.88868 2.35662 18 - -
3327 1.38629 1.38629 1.38629 1.38629
3328 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
3329 19 2.53331 3.02441 0.20344 2.88069 19 - -
3330 1.38629 1.38629 1.38629 1.38629
3331 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
3332 20 0.23862 2.84929 2.43386 2.70756 20 - -
3333 1.38629 1.38629 1.38629 1.38629
3334 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
3335 21 2.53331 3.02441 0.20344 2.88069 21 - -
3336 1.38629 1.38629 1.38629 1.38629
3337 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
3338 22 2.53331 3.02441 0.20344 2.88069 22 - -
3339 1.38629 1.38629 1.38629 1.38629
3340 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
3341 23 2.53331 3.02441 0.20344 2.88069 23 - -
3342 1.38629 1.38629 1.38629 1.38629
3343 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
3344 24 2.57915 2.25909 2.64442 0.28946 24 - -
3345 1.38629 1.38629 1.38629 1.38629
3346 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
3347 25 0.23862 2.84929 2.43386 2.70756 25 - -
3348 1.38629 1.38629 1.38629 1.38629
3349 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
3350 26 2.57915 2.25909 2.64442 0.28946 26 - -
3351 1.38629 1.38629 1.38629 1.38629
3352 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
3353 27 2.53331 3.02441 0.20344 2.88069 27 - -
3354 1.38629 1.38629 1.38629 1.38629
3355 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
3356 28 2.57915 2.25909 2.64442 0.28946 28 - -
3357 1.38629 1.38629 1.38629 1.38629
3358 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
3359 29 2.81865 0.23582 2.88868 2.35662 29 - -
3360 1.38629 1.38629 1.38629 1.38629
3361 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
3362 30 2.57915 2.25909 2.64442 0.28946 30 - -
3363 1.38629 1.38629 1.38629 1.38629
3364 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
3365 31 2.53331 3.02441 0.20344 2.88069 31 - -
3366 1.38629 1.38629 1.38629 1.38629
3367 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
3368 32 2.57915 2.25909 2.64442 0.28946 32 - -
3369 1.38629 1.38629 1.38629 1.38629
3370 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
3371 33 2.81865 0.23582 2.88868 2.35662 33 - -
3372 1.38629 1.38629 1.38629 1.38629
3373 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
3374 34 2.57915 2.25909 2.64442 0.28946 34 - -
3375 1.38629 1.38629 1.38629 1.38629
3376 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
3377 35 2.53331 3.02441 0.20344 2.88069 35 - -
3378 1.38629 1.38629 1.38629 1.38629
3379 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
3380 36 0.23862 2.84929 2.43386 2.70756 36 - -
3381 1.38629 1.38629 1.38629 1.38629
3382 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
3383 37 2.53331 3.02441 0.20344 2.88069 37 - -
3384 1.38629 1.38629 1.38629 1.38629
3385 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
3386 38 2.81865 0.23582 2.88868 2.35662 38 - -
3387 1.38629 1.38629 1.38629 1.38629
3388 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
3389 39 2.53331 3.02441 0.20344 2.88069 39 - -
3390 1.38629 1.38629 1.38629 1.38629
3391 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
3392 40 2.57915 2.25909 2.64442 0.28946 40 - -
3393 1.38629 1.38629 1.38629 1.38629
3394 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
3395 41 2.81865 0.23582 2.88868 2.35662 41 - -
3396 1.38629 1.38629 1.38629 1.38629
3397 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
3398 42 2.81865 0.23582 2.88868 2.35662 42 - -
3399 1.38629 1.38629 1.38629 1.38629
3400 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
3401 43 0.23862 2.84929 2.43386 2.70756 43 - -
3402 1.38629 1.38629 1.38629 1.38629
3403 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
3404 44 2.57915 2.25909 2.64442 0.28946 44 - -
3405 1.38629 1.38629 1.38629 1.38629
3406 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
3407 45 2.53331 3.02441 0.20344 2.88069 45 - -
3408 1.38629 1.38629 1.38629 1.38629
3409 0.02469 3.71357 * 1.46634 0.26236 0.00000 *
3410 //
3411 HMMER3/b [3.0 | March 2010]
3412 NAME 3_End_Marchantiophyta_58S_end_twor_long
3413 LENG 45
3414 ALPH DNA
3415 RF no
3416 CS no
3417 MAP yes
3418 DATE Wed Jan 25 17:36:57 2012
3419 NSEQ 381
3420 EFFN 3.118996
3421 CKSUM 3010216746
3422 STATS LOCAL MSV -8.2812 0.71931
3423 STATS LOCAL VITERBI -7.9258 0.71931
3424 STATS LOCAL FORWARD -3.5872 0.71931
3425 HMM A C G T
3426 m->m m->i m->d i->m i->i d->m d->d
3427 COMPO 1.93097 1.06146 1.09757 1.74090
3428 1.38629 1.38629 1.38629 1.38629
3429 0.03833 3.97387 3.97387 1.46634 0.26236 0.00000 *
3430 1 2.89985 3.51884 0.12499 3.41648 1 - -
3431 1.38629 1.38629 1.38629 1.38629
3432 0.03833 3.97387 3.97387 1.46634 0.26236 1.09861 0.40547
3433 2 3.35520 0.13990 3.40789 2.77192 2 - -
3434 1.38629 1.38629 1.38629 1.38629
3435 0.03833 3.97387 3.97387 1.46634 0.26236 1.09861 0.40547
3436 3 2.89985 3.51884 0.12499 3.41648 3 - -
3437 1.38629 1.38629 1.38629 1.38629
3438 0.03833 3.97387 3.97387 1.46634 0.26236 1.09861 0.40547
3439 4 3.35520 0.13990 3.40789 2.77192 4 - -
3440 1.38629 1.38629 1.38629 1.38629
3441 0.03833 3.97387 3.97387 1.46634 0.26236 1.09861 0.40547
3442 5 3.35520 0.13990 3.40789 2.77192 5 - -
3443 1.38629 1.38629 1.38629 1.38629
3444 0.03833 3.97387 3.97387 1.46634 0.26236 1.09861 0.40547
3445 6 3.35520 0.13990 3.40789 2.77192 6 - -
3446 1.38629 1.38629 1.38629 1.38629
3447 0.03833 3.97387 3.97387 1.46634 0.26236 1.09861 0.40547
3448 7 2.89985 3.51884 0.12499 3.41648 7 - -
3449 1.38629 1.38629 1.38629 1.38629
3450 0.03833 3.97387 3.97387 1.46634 0.26236 1.09861 0.40547
3451 8 0.15114 3.31278 2.75786 3.20814 8 - -
3452 1.38629 1.38629 1.38629 1.38629
3453 0.03833 3.97387 3.97387 1.46634 0.26236 1.09861 0.40547
3454 9 2.89985 3.51884 0.12499 3.41648 9 - -
3455 1.38629 1.38629 1.38629 1.38629
3456 0.03833 3.97387 3.97387 1.46634 0.26236 1.09861 0.40547
3457 10 2.89985 3.51884 0.12499 3.41648 10 - -
3458 1.38629 1.38629 1.38629 1.38629
3459 0.03833 3.97387 3.97387 1.46634 0.26236 1.09861 0.40547
3460 11 3.28568 0.15570 3.34009 2.64040 11 - -
3461 1.38629 1.38629 1.38629 1.38629
3462 0.03833 3.97387 3.97387 1.46634 0.26236 1.09861 0.40547
3463 12 3.02100 2.55203 3.07171 0.18997 12 - -
3464 1.38629 1.38629 1.38629 1.38629
3465 0.03833 3.97387 3.97387 1.46634 0.26236 1.09861 0.40547
3466 13 3.02100 2.55203 3.07171 0.18997 13 - -
3467 1.38629 1.38629 1.38629 1.38629
3468 0.03833 3.97387 3.97387 1.46634 0.26236 1.09861 0.40547
3469 14 2.89985 3.51884 0.12499 3.41648 14 - -
3470 1.38629 1.38629 1.38629 1.38629
3471 0.03833 3.97387 3.97387 1.46634 0.26236 1.09861 0.40547
3472 15 3.02100 2.55203 3.07171 0.18997 15 - -
3473 1.38629 1.38629 1.38629 1.38629
3474 0.03833 3.97387 3.97387 1.46634 0.26236 1.09861 0.40547
3475 16 3.35520 0.13990 3.40789 2.77192 16 - -
3476 1.38629 1.38629 1.38629 1.38629
3477 0.03833 3.97387 3.97387 1.46634 0.26236 1.09861 0.40547
3478 17 3.35520 0.13990 3.40789 2.77192 17 - -
3479 1.38629 1.38629 1.38629 1.38629
3480 0.03833 3.97387 3.97387 1.46634 0.26236 1.09861 0.40547
3481 18 3.35520 0.13990 3.40789 2.77192 18 - -
3482 1.38629 1.38629 1.38629 1.38629
3483 0.03833 3.97387 3.97387 1.46634 0.26236 1.09861 0.40547
3484 19 2.67361 3.40631 0.14975 3.29928 19 - -
3485 1.38629 1.38629 1.38629 1.38629
3486 0.03833 3.97387 3.97387 1.46634 0.26236 1.09861 0.40547
3487 20 0.15114 3.31278 2.75786 3.20814 20 - -
3488 1.38629 1.38629 1.38629 1.38629
3489 0.03833 3.97387 3.97387 1.46634 0.26236 1.09861 0.40547
3490 21 2.89985 3.51884 0.12499 3.41648 21 - -
3491 1.38629 1.38629 1.38629 1.38629
3492 0.03833 3.97387 3.97387 1.46634 0.26236 1.09861 0.40547
3493 22 2.89985 3.51884 0.12499 3.41648 22 - -
3494 1.38629 1.38629 1.38629 1.38629
3495 0.03833 3.97387 3.97387 1.46634 0.26236 1.09861 0.40547
3496 23 2.89985 3.51884 0.12499 3.41648 23 - -
3497 1.38629 1.38629 1.38629 1.38629
3498 0.03833 3.97387 3.97387 1.46634 0.26236 1.09861 0.40547
3499 24 3.35520 0.13990 3.40789 2.77192 24 - -
3500 1.38629 1.38629 1.38629 1.38629
3501 0.03833 3.97387 3.97387 1.46634 0.26236 1.09861 0.40547
3502 25 0.15114 3.31278 2.75786 3.20814 25 - -
3503 1.38629 1.38629 1.38629 1.38629
3504 0.03833 3.97387 3.97387 1.46634 0.26236 1.09861 0.40547
3505 26 3.02100 2.55203 3.07171 0.18997 26 - -
3506 1.38629 1.38629 1.38629 1.38629
3507 0.03833 3.97387 3.97387 1.46634 0.26236 1.09861 0.40547
3508 27 2.89985 3.51884 0.12499 3.41648 27 - -
3509 1.38629 1.38629 1.38629 1.38629
3510 0.03833 3.97387 3.97387 1.46634 0.26236 1.09861 0.40547
3511 28 3.27238 0.15886 3.32714 2.61634 28 - -
3512 1.38629 1.38629 1.38629 1.38629
3513 0.03833 3.97387 3.97387 1.46634 0.26236 1.09861 0.40547
3514 29 3.35520 0.13990 3.40789 2.77192 29 - -
3515 1.38629 1.38629 1.38629 1.38629
3516 0.03833 3.97387 3.97387 1.46634 0.26236 1.09861 0.40547
3517 30 3.02100 2.55203 3.07171 0.18997 30 - -
3518 1.38629 1.38629 1.38629 1.38629
3519 0.03833 3.97387 3.97387 1.46634 0.26236 1.09861 0.40547
3520 31 2.89985 3.51884 0.12499 3.41648 31 - -
3521 1.38629 1.38629 1.38629 1.38629
3522 0.03833 3.97387 3.97387 1.46634 0.26236 1.09861 0.40547
3523 32 3.29487 0.15354 3.34904 2.65722 32 - -
3524 1.38629 1.38629 1.38629 1.38629
3525 0.03833 3.97387 3.97387 1.46634 0.26236 1.09861 0.40547
3526 33 3.35520 0.13990 3.40789 2.77192 33 - -
3527 1.38629 1.38629 1.38629 1.38629
3528 0.03833 3.97387 3.97387 1.46634 0.26236 1.09861 0.40547
3529 34 3.02100 2.55203 3.07171 0.18997 34 - -
3530 1.38629 1.38629 1.38629 1.38629
3531 0.03833 3.97387 3.97387 1.46634 0.26236 1.09861 0.40547
3532 35 2.89985 3.51884 0.12499 3.41648 35 - -
3533 1.38629 1.38629 1.38629 1.38629
3534 0.03833 3.97387 3.97387 1.46634 0.26236 1.09861 0.40547
3535 36 0.15114 3.31278 2.75786 3.20814 36 - -
3536 1.38629 1.38629 1.38629 1.38629
3537 0.03833 3.97387 3.97387 1.46634 0.26236 1.09861 0.40547
3538 37 2.89985 3.51884 0.12499 3.41648 37 - -
3539 1.38629 1.38629 1.38629 1.38629
3540 0.03833 3.97387 3.97387 1.46634 0.26236 1.09861 0.40547
3541 38 3.35520 0.13990 3.40789 2.77192 38 - -
3542 1.38629 1.38629 1.38629 1.38629
3543 0.03833 3.97387 3.97387 1.46634 0.26236 1.09861 0.40547
3544 39 2.89985 3.51884 0.12499 3.41648 39 - -
3545 1.38629 1.38629 1.38629 1.38629
3546 0.03833 3.97387 3.97387 1.46634 0.26236 1.09861 0.40547
3547 40 3.02100 2.55203 3.07171 0.18997 40 - -
3548 1.38629 1.38629 1.38629 1.38629
3549 0.03833 3.97387 3.97387 1.46634 0.26236 1.09861 0.40547
3550 41 3.35520 0.13990 3.40789 2.77192 41 - -
3551 1.38629 1.38629 1.38629 1.38629
3552 0.03833 3.97387 3.97387 1.46634 0.26236 1.09861 0.40547
3553 42 0.15114 3.31278 2.75786 3.20814 42 - -
3554 1.38629 1.38629 1.38629 1.38629
3555 0.03833 3.97387 3.97387 1.46634 0.26236 1.09861 0.40547
3556 43 3.35520 0.13990 3.40789 2.77192 43 - -
3557 1.38629 1.38629 1.38629 1.38629
3558 0.03833 3.97387 3.97387 1.46634 0.26236 1.09861 0.40547
3559 44 3.25363 0.16339 3.30892 2.58292 44 - -
3560 1.38629 1.38629 1.38629 1.38629
3561 0.03833 3.97387 3.97387 1.46634 0.26236 1.09861 0.40547
3562 45 2.89985 3.51884 0.12499 3.41648 45 - -
3563 1.38629 1.38629 1.38629 1.38629
3564 0.01935 3.95489 * 1.46634 0.26236 0.00000 *
3565 //
3566 HMMER3/b [3.0 | March 2010]
3567 NAME 3_End_Marchantiophyta_58S_end_twos_long
3568 LENG 45
3569 ALPH DNA
3570 RF no
3571 CS no
3572 MAP yes
3573 DATE Wed Jan 25 17:37:03 2012
3574 NSEQ 3
3575 EFFN 3.000000
3576 CKSUM 2079554623
3577 STATS LOCAL MSV -8.0923 0.71963
3578 STATS LOCAL VITERBI -7.8815 0.71963
3579 STATS LOCAL FORWARD -3.7154 0.71963
3580 HMM A C G T
3581 m->m m->i m->d i->m i->i d->m d->d
3582 COMPO 1.92700 1.06154 1.09883 1.74164
3583 1.38629 1.38629 1.38629 1.38629
3584 0.03922 3.95124 3.95124 1.46634 0.26236 0.00000 *
3585 1 2.86982 3.47591 0.13017 3.36931 1 - -
3586 1.38629 1.38629 1.38629 1.38629
3587 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
3588 2 3.30705 0.14631 3.36166 2.73626 2 - -
3589 1.38629 1.38629 1.38629 1.38629
3590 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
3591 3 2.86982 3.47591 0.13017 3.36931 3 - -
3592 1.38629 1.38629 1.38629 1.38629
3593 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
3594 4 3.30705 0.14631 3.36166 2.73626 4 - -
3595 1.38629 1.38629 1.38629 1.38629
3596 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
3597 5 3.30705 0.14631 3.36166 2.73626 5 - -
3598 1.38629 1.38629 1.38629 1.38629
3599 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
3600 6 3.30705 0.14631 3.36166 2.73626 6 - -
3601 1.38629 1.38629 1.38629 1.38629
3602 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
3603 7 2.86982 3.47591 0.13017 3.36931 7 - -
3604 1.38629 1.38629 1.38629 1.38629
3605 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
3606 8 0.15719 3.27118 2.73043 3.16274 8 - -
3607 1.38629 1.38629 1.38629 1.38629
3608 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
3609 9 2.86982 3.47591 0.13017 3.36931 9 - -
3610 1.38629 1.38629 1.38629 1.38629
3611 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
3612 10 2.86982 3.47591 0.13017 3.36931 10 - -
3613 1.38629 1.38629 1.38629 1.38629
3614 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
3615 11 3.30705 0.14631 3.36166 2.73626 11 - -
3616 1.38629 1.38629 1.38629 1.38629
3617 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
3618 12 2.97980 2.52563 3.03204 0.19727 12 - -
3619 1.38629 1.38629 1.38629 1.38629
3620 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
3621 13 2.97980 2.52563 3.03204 0.19727 13 - -
3622 1.38629 1.38629 1.38629 1.38629
3623 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
3624 14 0.15719 3.27118 2.73043 3.16274 14 - -
3625 1.38629 1.38629 1.38629 1.38629
3626 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
3627 15 2.97980 2.52563 3.03204 0.19727 15 - -
3628 1.38629 1.38629 1.38629 1.38629
3629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
3630 16 3.30705 0.14631 3.36166 2.73626 16 - -
3631 1.38629 1.38629 1.38629 1.38629
3632 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
3633 17 3.30705 0.14631 3.36166 2.73626 17 - -
3634 1.38629 1.38629 1.38629 1.38629
3635 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
3636 18 3.30705 0.14631 3.36166 2.73626 18 - -
3637 1.38629 1.38629 1.38629 1.38629
3638 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
3639 19 2.86982 3.47591 0.13017 3.36931 19 - -
3640 1.38629 1.38629 1.38629 1.38629
3641 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
3642 20 0.15719 3.27118 2.73043 3.16274 20 - -
3643 1.38629 1.38629 1.38629 1.38629
3644 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
3645 21 2.86982 3.47591 0.13017 3.36931 21 - -
3646 1.38629 1.38629 1.38629 1.38629
3647 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
3648 22 2.86982 3.47591 0.13017 3.36931 22 - -
3649 1.38629 1.38629 1.38629 1.38629
3650 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
3651 23 2.86982 3.47591 0.13017 3.36931 23 - -
3652 1.38629 1.38629 1.38629 1.38629
3653 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
3654 24 3.30705 0.14631 3.36166 2.73626 24 - -
3655 1.38629 1.38629 1.38629 1.38629
3656 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
3657 25 0.15719 3.27118 2.73043 3.16274 25 - -
3658 1.38629 1.38629 1.38629 1.38629
3659 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
3660 26 2.97980 2.52563 3.03204 0.19727 26 - -
3661 1.38629 1.38629 1.38629 1.38629
3662 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
3663 27 2.86982 3.47591 0.13017 3.36931 27 - -
3664 1.38629 1.38629 1.38629 1.38629
3665 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
3666 28 3.30705 0.14631 3.36166 2.73626 28 - -
3667 1.38629 1.38629 1.38629 1.38629
3668 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
3669 29 3.30705 0.14631 3.36166 2.73626 29 - -
3670 1.38629 1.38629 1.38629 1.38629
3671 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
3672 30 2.97980 2.52563 3.03204 0.19727 30 - -
3673 1.38629 1.38629 1.38629 1.38629
3674 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
3675 31 2.86982 3.47591 0.13017 3.36931 31 - -
3676 1.38629 1.38629 1.38629 1.38629
3677 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
3678 32 3.30705 0.14631 3.36166 2.73626 32 - -
3679 1.38629 1.38629 1.38629 1.38629
3680 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
3681 33 3.30705 0.14631 3.36166 2.73626 33 - -
3682 1.38629 1.38629 1.38629 1.38629
3683 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
3684 34 2.97980 2.52563 3.03204 0.19727 34 - -
3685 1.38629 1.38629 1.38629 1.38629
3686 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
3687 35 2.86982 3.47591 0.13017 3.36931 35 - -
3688 1.38629 1.38629 1.38629 1.38629
3689 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
3690 36 0.15719 3.27118 2.73043 3.16274 36 - -
3691 1.38629 1.38629 1.38629 1.38629
3692 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
3693 37 2.86982 3.47591 0.13017 3.36931 37 - -
3694 1.38629 1.38629 1.38629 1.38629
3695 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
3696 38 3.30705 0.14631 3.36166 2.73626 38 - -
3697 1.38629 1.38629 1.38629 1.38629
3698 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
3699 39 2.86982 3.47591 0.13017 3.36931 39 - -
3700 1.38629 1.38629 1.38629 1.38629
3701 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
3702 40 2.97980 2.52563 3.03204 0.19727 40 - -
3703 1.38629 1.38629 1.38629 1.38629
3704 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
3705 41 3.30705 0.14631 3.36166 2.73626 41 - -
3706 1.38629 1.38629 1.38629 1.38629
3707 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
3708 42 2.86982 3.47591 0.13017 3.36931 42 - -
3709 1.38629 1.38629 1.38629 1.38629
3710 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
3711 43 3.30705 0.14631 3.36166 2.73626 43 - -
3712 1.38629 1.38629 1.38629 1.38629
3713 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
3714 44 3.30705 0.14631 3.36166 2.73626 44 - -
3715 1.38629 1.38629 1.38629 1.38629
3716 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
3717 45 2.86982 3.47591 0.13017 3.36931 45 - -
3718 1.38629 1.38629 1.38629 1.38629
3719 0.01980 3.93183 * 1.46634 0.26236 0.00000 *
3720 //
3721 HMMER3/b [3.0 | March 2010]
3722 NAME 3_End_Marchantiophyta_58S_end_twot_long
3723 LENG 45
3724 ALPH DNA
3725 RF no
3726 CS no
3727 MAP yes
3728 DATE Wed Jan 25 17:37:10 2012
3729 NSEQ 3
3730 EFFN 3.000000
3731 CKSUM 1228495162
3732 STATS LOCAL MSV -8.0485 0.71986
3733 STATS LOCAL VITERBI -7.8652 0.71986
3734 STATS LOCAL FORWARD -3.8213 0.71986
3735 HMM A C G T
3736 m->m m->i m->d i->m i->i d->m d->d
3737 COMPO 1.91826 1.26987 1.04606 1.50981
3738 1.38629 1.38629 1.38629 1.38629
3739 0.03922 3.95124 3.95124 1.46634 0.26236 0.00000 *
3740 1 2.86982 3.47591 0.13017 3.36931 1 - -
3741 1.38629 1.38629 1.38629 1.38629
3742 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
3743 2 3.30705 0.14631 3.36166 2.73626 2 - -
3744 1.38629 1.38629 1.38629 1.38629
3745 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
3746 3 2.86982 3.47591 0.13017 3.36931 3 - -
3747 1.38629 1.38629 1.38629 1.38629
3748 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
3749 4 3.30705 0.14631 3.36166 2.73626 4 - -
3750 1.38629 1.38629 1.38629 1.38629
3751 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
3752 5 3.30705 0.14631 3.36166 2.73626 5 - -
3753 1.38629 1.38629 1.38629 1.38629
3754 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
3755 6 3.30705 0.14631 3.36166 2.73626 6 - -
3756 1.38629 1.38629 1.38629 1.38629
3757 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
3758 7 2.86982 3.47591 0.13017 3.36931 7 - -
3759 1.38629 1.38629 1.38629 1.38629
3760 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
3761 8 0.15719 3.27118 2.73043 3.16274 8 - -
3762 1.38629 1.38629 1.38629 1.38629
3763 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
3764 9 2.86982 3.47591 0.13017 3.36931 9 - -
3765 1.38629 1.38629 1.38629 1.38629
3766 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
3767 10 2.86982 3.47591 0.13017 3.36931 10 - -
3768 1.38629 1.38629 1.38629 1.38629
3769 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
3770 11 3.30705 0.14631 3.36166 2.73626 11 - -
3771 1.38629 1.38629 1.38629 1.38629
3772 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
3773 12 2.97980 2.52563 3.03204 0.19727 12 - -
3774 1.38629 1.38629 1.38629 1.38629
3775 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
3776 13 2.97980 2.52563 3.03204 0.19727 13 - -
3777 1.38629 1.38629 1.38629 1.38629
3778 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
3779 14 2.86982 3.47591 0.13017 3.36931 14 - -
3780 1.38629 1.38629 1.38629 1.38629
3781 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
3782 15 2.97980 2.52563 3.03204 0.19727 15 - -
3783 1.38629 1.38629 1.38629 1.38629
3784 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
3785 16 2.97980 2.52563 3.03204 0.19727 16 - -
3786 1.38629 1.38629 1.38629 1.38629
3787 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
3788 17 3.30705 0.14631 3.36166 2.73626 17 - -
3789 1.38629 1.38629 1.38629 1.38629
3790 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
3791 18 3.30705 0.14631 3.36166 2.73626 18 - -
3792 1.38629 1.38629 1.38629 1.38629
3793 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
3794 19 2.86982 3.47591 0.13017 3.36931 19 - -
3795 1.38629 1.38629 1.38629 1.38629
3796 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
3797 20 0.15719 3.27118 2.73043 3.16274 20 - -
3798 1.38629 1.38629 1.38629 1.38629
3799 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
3800 21 2.86982 3.47591 0.13017 3.36931 21 - -
3801 1.38629 1.38629 1.38629 1.38629
3802 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
3803 22 2.86982 3.47591 0.13017 3.36931 22 - -
3804 1.38629 1.38629 1.38629 1.38629
3805 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
3806 23 2.86982 3.47591 0.13017 3.36931 23 - -
3807 1.38629 1.38629 1.38629 1.38629
3808 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
3809 24 3.30705 0.14631 3.36166 2.73626 24 - -
3810 1.38629 1.38629 1.38629 1.38629
3811 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
3812 25 0.15719 3.27118 2.73043 3.16274 25 - -
3813 1.38629 1.38629 1.38629 1.38629
3814 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
3815 26 2.97980 2.52563 3.03204 0.19727 26 - -
3816 1.38629 1.38629 1.38629 1.38629
3817 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
3818 27 2.86982 3.47591 0.13017 3.36931 27 - -
3819 1.38629 1.38629 1.38629 1.38629
3820 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
3821 28 2.97980 2.52563 3.03204 0.19727 28 - -
3822 1.38629 1.38629 1.38629 1.38629
3823 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
3824 29 3.30705 0.14631 3.36166 2.73626 29 - -
3825 1.38629 1.38629 1.38629 1.38629
3826 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
3827 30 2.97980 2.52563 3.03204 0.19727 30 - -
3828 1.38629 1.38629 1.38629 1.38629
3829 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
3830 31 2.86982 3.47591 0.13017 3.36931 31 - -
3831 1.38629 1.38629 1.38629 1.38629
3832 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
3833 32 3.30705 0.14631 3.36166 2.73626 32 - -
3834 1.38629 1.38629 1.38629 1.38629
3835 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
3836 33 3.30705 0.14631 3.36166 2.73626 33 - -
3837 1.38629 1.38629 1.38629 1.38629
3838 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
3839 34 2.97980 2.52563 3.03204 0.19727 34 - -
3840 1.38629 1.38629 1.38629 1.38629
3841 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
3842 35 2.86982 3.47591 0.13017 3.36931 35 - -
3843 1.38629 1.38629 1.38629 1.38629
3844 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
3845 36 0.15719 3.27118 2.73043 3.16274 36 - -
3846 1.38629 1.38629 1.38629 1.38629
3847 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
3848 37 2.86982 3.47591 0.13017 3.36931 37 - -
3849 1.38629 1.38629 1.38629 1.38629
3850 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
3851 38 3.30705 0.14631 3.36166 2.73626 38 - -
3852 1.38629 1.38629 1.38629 1.38629
3853 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
3854 39 2.86982 3.47591 0.13017 3.36931 39 - -
3855 1.38629 1.38629 1.38629 1.38629
3856 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
3857 40 2.97980 2.52563 3.03204 0.19727 40 - -
3858 1.38629 1.38629 1.38629 1.38629
3859 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
3860 41 3.30705 0.14631 3.36166 2.73626 41 - -
3861 1.38629 1.38629 1.38629 1.38629
3862 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
3863 42 0.15719 3.27118 2.73043 3.16274 42 - -
3864 1.38629 1.38629 1.38629 1.38629
3865 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
3866 43 2.97980 2.52563 3.03204 0.19727 43 - -
3867 1.38629 1.38629 1.38629 1.38629
3868 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
3869 44 2.86982 3.47591 0.13017 3.36931 44 - -
3870 1.38629 1.38629 1.38629 1.38629
3871 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
3872 45 2.86982 3.47591 0.13017 3.36931 45 - -
3873 1.38629 1.38629 1.38629 1.38629
3874 0.01980 3.93183 * 1.46634 0.26236 0.00000 *
3875 //
3876 HMMER3/b [3.0 | March 2010]
3877 NAME 3_End_Marchantiophyta_58S_end_twou_long
3878 LENG 45
3879 ALPH DNA
3880 RF no
3881 CS no
3882 MAP yes
3883 DATE Wed Jan 25 17:37:17 2012
3884 NSEQ 3
3885 EFFN 3.000000
3886 CKSUM 373476516
3887 STATS LOCAL MSV -8.0655 0.71980
3888 STATS LOCAL VITERBI -7.9691 0.71980
3889 STATS LOCAL FORWARD -3.6833 0.71980
3890 HMM A C G T
3891 m->m m->i m->d i->m i->i d->m d->d
3892 COMPO 1.92304 1.15872 1.09717 1.57922
3893 1.38629 1.38629 1.38629 1.38629
3894 0.03922 3.95124 3.95124 1.46634 0.26236 0.00000 *
3895 1 2.86982 3.47591 0.13017 3.36931 1 - -
3896 1.38629 1.38629 1.38629 1.38629
3897 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
3898 2 3.30705 0.14631 3.36166 2.73626 2 - -
3899 1.38629 1.38629 1.38629 1.38629
3900 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
3901 3 2.86982 3.47591 0.13017 3.36931 3 - -
3902 1.38629 1.38629 1.38629 1.38629
3903 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
3904 4 3.30705 0.14631 3.36166 2.73626 4 - -
3905 1.38629 1.38629 1.38629 1.38629
3906 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
3907 5 3.30705 0.14631 3.36166 2.73626 5 - -
3908 1.38629 1.38629 1.38629 1.38629
3909 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
3910 6 3.30705 0.14631 3.36166 2.73626 6 - -
3911 1.38629 1.38629 1.38629 1.38629
3912 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
3913 7 2.86982 3.47591 0.13017 3.36931 7 - -
3914 1.38629 1.38629 1.38629 1.38629
3915 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
3916 8 0.15719 3.27118 2.73043 3.16274 8 - -
3917 1.38629 1.38629 1.38629 1.38629
3918 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
3919 9 2.86982 3.47591 0.13017 3.36931 9 - -
3920 1.38629 1.38629 1.38629 1.38629
3921 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
3922 10 2.86982 3.47591 0.13017 3.36931 10 - -
3923 1.38629 1.38629 1.38629 1.38629
3924 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
3925 11 2.97980 2.52563 3.03204 0.19727 11 - -
3926 1.38629 1.38629 1.38629 1.38629
3927 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
3928 12 2.97980 2.52563 3.03204 0.19727 12 - -
3929 1.38629 1.38629 1.38629 1.38629
3930 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
3931 13 2.97980 2.52563 3.03204 0.19727 13 - -
3932 1.38629 1.38629 1.38629 1.38629
3933 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
3934 14 2.97980 2.52563 3.03204 0.19727 14 - -
3935 1.38629 1.38629 1.38629 1.38629
3936 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
3937 15 2.97980 2.52563 3.03204 0.19727 15 - -
3938 1.38629 1.38629 1.38629 1.38629
3939 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
3940 16 2.86982 3.47591 0.13017 3.36931 16 - -
3941 1.38629 1.38629 1.38629 1.38629
3942 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
3943 17 3.30705 0.14631 3.36166 2.73626 17 - -
3944 1.38629 1.38629 1.38629 1.38629
3945 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
3946 18 3.30705 0.14631 3.36166 2.73626 18 - -
3947 1.38629 1.38629 1.38629 1.38629
3948 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
3949 19 2.86982 3.47591 0.13017 3.36931 19 - -
3950 1.38629 1.38629 1.38629 1.38629
3951 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
3952 20 0.15719 3.27118 2.73043 3.16274 20 - -
3953 1.38629 1.38629 1.38629 1.38629
3954 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
3955 21 2.86982 3.47591 0.13017 3.36931 21 - -
3956 1.38629 1.38629 1.38629 1.38629
3957 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
3958 22 2.86982 3.47591 0.13017 3.36931 22 - -
3959 1.38629 1.38629 1.38629 1.38629
3960 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
3961 23 2.86982 3.47591 0.13017 3.36931 23 - -
3962 1.38629 1.38629 1.38629 1.38629
3963 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
3964 24 3.30705 0.14631 3.36166 2.73626 24 - -
3965 1.38629 1.38629 1.38629 1.38629
3966 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
3967 25 0.15719 3.27118 2.73043 3.16274 25 - -
3968 1.38629 1.38629 1.38629 1.38629
3969 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
3970 26 2.97980 2.52563 3.03204 0.19727 26 - -
3971 1.38629 1.38629 1.38629 1.38629
3972 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
3973 27 2.86982 3.47591 0.13017 3.36931 27 - -
3974 1.38629 1.38629 1.38629 1.38629
3975 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
3976 28 3.30705 0.14631 3.36166 2.73626 28 - -
3977 1.38629 1.38629 1.38629 1.38629
3978 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
3979 29 3.30705 0.14631 3.36166 2.73626 29 - -
3980 1.38629 1.38629 1.38629 1.38629
3981 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
3982 30 2.97980 2.52563 3.03204 0.19727 30 - -
3983 1.38629 1.38629 1.38629 1.38629
3984 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
3985 31 2.86982 3.47591 0.13017 3.36931 31 - -
3986 1.38629 1.38629 1.38629 1.38629
3987 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
3988 32 3.30705 0.14631 3.36166 2.73626 32 - -
3989 1.38629 1.38629 1.38629 1.38629
3990 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
3991 33 3.30705 0.14631 3.36166 2.73626 33 - -
3992 1.38629 1.38629 1.38629 1.38629
3993 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
3994 34 2.97980 2.52563 3.03204 0.19727 34 - -
3995 1.38629 1.38629 1.38629 1.38629
3996 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
3997 35 2.86982 3.47591 0.13017 3.36931 35 - -
3998 1.38629 1.38629 1.38629 1.38629
3999 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
4000 36 0.15719 3.27118 2.73043 3.16274 36 - -
4001 1.38629 1.38629 1.38629 1.38629
4002 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
4003 37 2.86982 3.47591 0.13017 3.36931 37 - -
4004 1.38629 1.38629 1.38629 1.38629
4005 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
4006 38 3.30705 0.14631 3.36166 2.73626 38 - -
4007 1.38629 1.38629 1.38629 1.38629
4008 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
4009 39 2.86982 3.47591 0.13017 3.36931 39 - -
4010 1.38629 1.38629 1.38629 1.38629
4011 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
4012 40 2.97980 2.52563 3.03204 0.19727 40 - -
4013 1.38629 1.38629 1.38629 1.38629
4014 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
4015 41 3.30705 0.14631 3.36166 2.73626 41 - -
4016 1.38629 1.38629 1.38629 1.38629
4017 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
4018 42 0.15719 3.27118 2.73043 3.16274 42 - -
4019 1.38629 1.38629 1.38629 1.38629
4020 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
4021 43 3.30705 0.14631 3.36166 2.73626 43 - -
4022 1.38629 1.38629 1.38629 1.38629
4023 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
4024 44 3.30705 0.14631 3.36166 2.73626 44 - -
4025 1.38629 1.38629 1.38629 1.38629
4026 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
4027 45 2.86982 3.47591 0.13017 3.36931 45 - -
4028 1.38629 1.38629 1.38629 1.38629
4029 0.01980 3.93183 * 1.46634 0.26236 0.00000 *
4030 //
4031 HMMER3/b [3.0 | March 2010]
4032 NAME 3_End_Marchantiophyta_58S_end_twox_long
4033 LENG 45
4034 ALPH DNA
4035 RF no
4036 CS no
4037 MAP yes
4038 DATE Wed Jan 25 17:37:24 2012
4039 NSEQ 2
4040 EFFN 2.000000
4041 CKSUM 2845665714
4042 STATS LOCAL MSV -7.6619 0.72718
4043 STATS LOCAL VITERBI -8.4364 0.72718
4044 STATS LOCAL FORWARD -3.1326 0.72718
4045 HMM A C G T
4046 m->m m->i m->d i->m i->i d->m d->d
4047 COMPO 1.83385 1.15118 1.12465 1.61359
4048 1.38629 1.38629 1.38629 1.38629
4049 0.04879 3.73767 3.73767 1.46634 0.26236 0.00000 *
4050 1 2.53331 3.02441 0.20344 2.88069 1 - -
4051 1.38629 1.38629 1.38629 1.38629
4052 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
4053 2 2.81865 0.23582 2.88868 2.35662 2 - -
4054 1.38629 1.38629 1.38629 1.38629
4055 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
4056 3 2.53331 3.02441 0.20344 2.88069 3 - -
4057 1.38629 1.38629 1.38629 1.38629
4058 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
4059 4 2.81865 0.23582 2.88868 2.35662 4 - -
4060 1.38629 1.38629 1.38629 1.38629
4061 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
4062 5 2.81865 0.23582 2.88868 2.35662 5 - -
4063 1.38629 1.38629 1.38629 1.38629
4064 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
4065 6 2.81865 0.23582 2.88868 2.35662 6 - -
4066 1.38629 1.38629 1.38629 1.38629
4067 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
4068 7 2.53331 3.02441 0.20344 2.88069 7 - -
4069 1.38629 1.38629 1.38629 1.38629
4070 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
4071 8 0.23862 2.84929 2.43386 2.70756 8 - -
4072 1.38629 1.38629 1.38629 1.38629
4073 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
4074 9 2.53331 3.02441 0.20344 2.88069 9 - -
4075 1.38629 1.38629 1.38629 1.38629
4076 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
4077 10 2.53331 3.02441 0.20344 2.88069 10 - -
4078 1.38629 1.38629 1.38629 1.38629
4079 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
4080 11 2.81865 0.23582 2.88868 2.35662 11 - -
4081 1.38629 1.38629 1.38629 1.38629
4082 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
4083 12 2.57915 2.25909 2.64442 0.28946 12 - -
4084 1.38629 1.38629 1.38629 1.38629
4085 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
4086 13 2.81865 0.23582 2.88868 2.35662 13 - -
4087 1.38629 1.38629 1.38629 1.38629
4088 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
4089 14 2.53331 3.02441 0.20344 2.88069 14 - -
4090 1.38629 1.38629 1.38629 1.38629
4091 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
4092 15 2.57915 2.25909 2.64442 0.28946 15 - -
4093 1.38629 1.38629 1.38629 1.38629
4094 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
4095 16 2.81865 0.23582 2.88868 2.35662 16 - -
4096 1.38629 1.38629 1.38629 1.38629
4097 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
4098 17 2.81865 0.23582 2.88868 2.35662 17 - -
4099 1.38629 1.38629 1.38629 1.38629
4100 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
4101 18 2.81865 0.23582 2.88868 2.35662 18 - -
4102 1.38629 1.38629 1.38629 1.38629
4103 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
4104 19 2.53331 3.02441 0.20344 2.88069 19 - -
4105 1.38629 1.38629 1.38629 1.38629
4106 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
4107 20 0.23862 2.84929 2.43386 2.70756 20 - -
4108 1.38629 1.38629 1.38629 1.38629
4109 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
4110 21 2.53331 3.02441 0.20344 2.88069 21 - -
4111 1.38629 1.38629 1.38629 1.38629
4112 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
4113 22 2.53331 3.02441 0.20344 2.88069 22 - -
4114 1.38629 1.38629 1.38629 1.38629
4115 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
4116 23 2.53331 3.02441 0.20344 2.88069 23 - -
4117 1.38629 1.38629 1.38629 1.38629
4118 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
4119 24 2.81865 0.23582 2.88868 2.35662 24 - -
4120 1.38629 1.38629 1.38629 1.38629
4121 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
4122 25 0.23862 2.84929 2.43386 2.70756 25 - -
4123 1.38629 1.38629 1.38629 1.38629
4124 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
4125 26 2.57915 2.25909 2.64442 0.28946 26 - -
4126 1.38629 1.38629 1.38629 1.38629
4127 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
4128 27 2.53331 3.02441 0.20344 2.88069 27 - -
4129 1.38629 1.38629 1.38629 1.38629
4130 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
4131 28 2.81865 0.23582 2.88868 2.35662 28 - -
4132 1.38629 1.38629 1.38629 1.38629
4133 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
4134 29 2.81865 0.23582 2.88868 2.35662 29 - -
4135 1.38629 1.38629 1.38629 1.38629
4136 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
4137 30 2.57915 2.25909 2.64442 0.28946 30 - -
4138 1.38629 1.38629 1.38629 1.38629
4139 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
4140 31 2.53331 3.02441 0.20344 2.88069 31 - -
4141 1.38629 1.38629 1.38629 1.38629
4142 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
4143 32 2.81865 0.23582 2.88868 2.35662 32 - -
4144 1.38629 1.38629 1.38629 1.38629
4145 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
4146 33 2.81865 0.23582 2.88868 2.35662 33 - -
4147 1.38629 1.38629 1.38629 1.38629
4148 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
4149 34 2.57915 2.25909 2.64442 0.28946 34 - -
4150 1.38629 1.38629 1.38629 1.38629
4151 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
4152 35 2.53331 3.02441 0.20344 2.88069 35 - -
4153 1.38629 1.38629 1.38629 1.38629
4154 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
4155 36 0.23862 2.84929 2.43386 2.70756 36 - -
4156 1.38629 1.38629 1.38629 1.38629
4157 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
4158 37 2.53331 3.02441 0.20344 2.88069 37 - -
4159 1.38629 1.38629 1.38629 1.38629
4160 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
4161 38 2.81865 0.23582 2.88868 2.35662 38 - -
4162 1.38629 1.38629 1.38629 1.38629
4163 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
4164 39 2.53331 3.02441 0.20344 2.88069 39 - -
4165 1.38629 1.38629 1.38629 1.38629
4166 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
4167 40 2.57915 2.25909 2.64442 0.28946 40 - -
4168 1.38629 1.38629 1.38629 1.38629
4169 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
4170 41 0.23862 2.84929 2.43386 2.70756 41 - -
4171 1.38629 1.38629 1.38629 1.38629
4172 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
4173 42 2.57915 2.25909 2.64442 0.28946 42 - -
4174 1.38629 1.38629 1.38629 1.38629
4175 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
4176 43 2.53331 3.02441 0.20344 2.88069 43 - -
4177 1.38629 1.38629 1.38629 1.38629
4178 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
4179 44 2.81865 0.23582 2.88868 2.35662 44 - -
4180 1.38629 1.38629 1.38629 1.38629
4181 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
4182 45 2.57915 2.25909 2.64442 0.28946 45 - -
4183 1.38629 1.38629 1.38629 1.38629
4184 0.02469 3.71357 * 1.46634 0.26236 0.00000 *
4185 //
4186 HMMER3/b [3.0 | March 2010]
4187 NAME 2_5.8_Marchantiophyta_58S_start_long
4188 LENG 45
4189 ALPH DNA
4190 RF no
4191 CS no
4192 MAP yes
4193 DATE Tue Jan 24 11:17:40 2012
4194 NSEQ 727
4195 EFFN 3.469379
4196 CKSUM 3115831225
4197 STATS LOCAL MSV -7.5086 0.71932
4198 STATS LOCAL VITERBI -7.5251 0.71932
4199 STATS LOCAL FORWARD -4.0424 0.71932
4200 HMM A C G T
4201 m->m m->i m->d i->m i->i d->m d->d
4202 COMPO 1.26902 1.34994 1.43847 1.50352
4203 1.38629 1.38629 1.38629 1.38629
4204 0.03591 4.03766 4.03766 1.46634 0.26236 0.00000 *
4205 1 2.11695 0.76692 1.75306 1.41917 1 - -
4206 1.38629 1.38629 1.38629 1.38629
4207 0.03591 4.03766 4.03766 1.46634 0.26236 1.09861 0.40547
4208 2 2.87784 3.58971 0.12120 3.49715 2 - -
4209 1.38629 1.38629 1.38629 1.38629
4210 0.03591 4.03766 4.03766 1.46634 0.26236 1.09861 0.40547
4211 3 0.13599 3.42610 2.83161 3.33214 3 - -
4212 1.38629 1.38629 1.38629 1.38629
4213 0.03591 4.03766 4.03766 1.46634 0.26236 1.09861 0.40547
4214 4 3.48585 0.12409 3.53304 2.86723 4 - -
4215 1.38629 1.38629 1.38629 1.38629
4216 0.03591 4.03766 4.03766 1.46634 0.26236 1.09861 0.40547
4217 5 3.13512 2.62469 3.18149 0.17136 5 - -
4218 1.38629 1.38629 1.38629 1.38629
4219 0.03591 4.03766 4.03766 1.46634 0.26236 1.09861 0.40547
4220 6 3.48585 0.12409 3.53304 2.86723 6 - -
4221 1.38629 1.38629 1.38629 1.38629
4222 0.03591 4.03766 4.03766 1.46634 0.26236 1.09861 0.40547
4223 7 3.13512 2.62469 3.18149 0.17136 7 - -
4224 1.38629 1.38629 1.38629 1.38629
4225 0.03591 4.03766 4.03766 1.46634 0.26236 1.09861 0.40547
4226 8 3.48585 0.12409 3.53304 2.86723 8 - -
4227 1.38629 1.38629 1.38629 1.38629
4228 0.03591 4.03766 4.03766 1.46634 0.26236 1.09861 0.40547
4229 9 0.14976 3.37255 2.70286 3.27615 9 - -
4230 1.38629 1.38629 1.38629 1.38629
4231 0.03591 4.03766 4.03766 1.46634 0.26236 1.09861 0.40547
4232 10 2.97924 3.63406 0.11222 3.54358 10 - -
4233 1.38629 1.38629 1.38629 1.38629
4234 0.03591 4.03766 4.03766 1.46634 0.26236 1.09861 0.40547
4235 11 3.48585 0.12409 3.53304 2.86723 11 - -
4236 1.38629 1.38629 1.38629 1.38629
4237 0.03591 4.03766 4.03766 1.46634 0.26236 1.09861 0.40547
4238 12 0.13599 3.42610 2.83161 3.33214 12 - -
4239 1.38629 1.38629 1.38629 1.38629
4240 0.03591 4.03766 4.03766 1.46634 0.26236 1.09861 0.40547
4241 13 0.13599 3.42610 2.83161 3.33214 13 - -
4242 1.38629 1.38629 1.38629 1.38629
4243 0.03591 4.03766 4.03766 1.46634 0.26236 1.09861 0.40547
4244 14 3.48585 0.12409 3.53304 2.86723 14 - -
4245 1.38629 1.38629 1.38629 1.38629
4246 0.03591 4.03766 4.03766 1.46634 0.26236 1.09861 0.40547
4247 15 2.97924 3.63406 0.11222 3.54358 15 - -
4248 1.38629 1.38629 1.38629 1.38629
4249 0.03591 4.03766 4.03766 1.46634 0.26236 1.09861 0.40547
4250 16 2.97924 3.63406 0.11222 3.54358 16 - -
4251 1.38629 1.38629 1.38629 1.38629
4252 0.03591 4.03766 4.03766 1.46634 0.26236 1.09861 0.40547
4253 17 0.13599 3.42610 2.83161 3.33214 17 - -
4254 1.38629 1.38629 1.38629 1.38629
4255 0.03591 4.03766 4.03766 1.46634 0.26236 1.09861 0.40547
4256 18 3.13512 2.62469 3.18149 0.17136 18 - -
4257 1.38629 1.38629 1.38629 1.38629
4258 0.03591 4.03766 4.03766 1.46634 0.26236 1.09861 0.40547
4259 19 0.13599 3.42610 2.83161 3.33214 19 - -
4260 1.38629 1.38629 1.38629 1.38629
4261 0.03591 4.03766 4.03766 1.46634 0.26236 1.09861 0.40547
4262 20 3.13512 2.62469 3.18149 0.17136 20 - -
4263 1.38629 1.38629 1.38629 1.38629
4264 0.03591 4.03766 4.03766 1.46634 0.26236 1.09861 0.40547
4265 21 3.48585 0.12409 3.53304 2.86723 21 - -
4266 1.38629 1.38629 1.38629 1.38629
4267 0.03591 4.03766 4.03766 1.46634 0.26236 1.09861 0.40547
4268 22 3.13512 2.62469 3.18149 0.17136 22 - -
4269 1.38629 1.38629 1.38629 1.38629
4270 0.03591 4.03766 4.03766 1.46634 0.26236 1.09861 0.40547
4271 23 2.99355 2.40996 2.97280 0.21207 23 - -
4272 1.38629 1.38629 1.38629 1.38629
4273 0.03591 4.03766 4.03766 1.46634 0.26236 1.09861 0.40547
4274 24 2.97924 3.63406 0.11222 3.54358 24 - -
4275 1.38629 1.38629 1.38629 1.38629
4276 0.03591 4.03766 4.03766 1.46634 0.26236 1.09861 0.40547
4277 25 2.97924 3.63406 0.11222 3.54358 25 - -
4278 1.38629 1.38629 1.38629 1.38629
4279 0.03591 4.03766 4.03766 1.46634 0.26236 1.09861 0.40547
4280 26 3.48585 0.12409 3.53304 2.86723 26 - -
4281 1.38629 1.38629 1.38629 1.38629
4282 0.03591 4.03766 4.03766 1.46634 0.26236 1.09861 0.40547
4283 27 3.13512 2.62469 3.18149 0.17136 27 - -
4284 1.38629 1.38629 1.38629 1.38629
4285 0.03591 4.03766 4.03766 1.46634 0.26236 1.09861 0.40547
4286 28 3.48585 0.12409 3.53304 2.86723 28 - -
4287 1.38629 1.38629 1.38629 1.38629
4288 0.03591 4.03766 4.03766 1.46634 0.26236 1.09861 0.40547
4289 29 2.90255 2.09775 2.95785 0.26077 29 - -
4290 1.38629 1.38629 1.38629 1.38629
4291 0.03591 4.03766 4.03766 1.46634 0.26236 1.09861 0.40547
4292 30 3.01545 2.33722 3.06631 0.21346 30 - -
4293 1.38629 1.38629 1.38629 1.38629
4294 0.03591 4.03766 4.03766 1.46634 0.26236 1.09861 0.40547
4295 31 2.93739 3.42661 0.12487 3.44547 31 - -
4296 1.38629 1.38629 1.38629 1.38629
4297 0.03591 4.03766 4.03766 1.46634 0.26236 1.09861 0.40547
4298 32 3.48585 0.12409 3.53304 2.86723 32 - -
4299 1.38629 1.38629 1.38629 1.38629
4300 0.03591 4.03766 4.03766 1.46634 0.26236 1.09861 0.40547
4301 33 0.13599 3.42610 2.83161 3.33214 33 - -
4302 1.38629 1.38629 1.38629 1.38629
4303 0.03591 4.03766 4.03766 1.46634 0.26236 1.09861 0.40547
4304 34 0.13599 3.42610 2.83161 3.33214 34 - -
4305 1.38629 1.38629 1.38629 1.38629
4306 0.03591 4.03766 4.03766 1.46634 0.26236 1.09861 0.40547
4307 35 3.48585 0.12409 3.53304 2.86723 35 - -
4308 1.38629 1.38629 1.38629 1.38629
4309 0.03591 4.03766 4.03766 1.46634 0.26236 1.09861 0.40547
4310 36 2.97924 3.63406 0.11222 3.54358 36 - -
4311 1.38629 1.38629 1.38629 1.38629
4312 0.03591 4.03766 4.03766 1.46634 0.26236 1.09861 0.40547
4313 37 0.13599 3.42610 2.83161 3.33214 37 - -
4314 1.38629 1.38629 1.38629 1.38629
4315 0.03591 4.03766 4.03766 1.46634 0.26236 1.09861 0.40547
4316 38 3.13512 2.62469 3.18149 0.17136 38 - -
4317 1.38629 1.38629 1.38629 1.38629
4318 0.03591 4.03766 4.03766 1.46634 0.26236 1.09861 0.40547
4319 39 2.97924 3.63406 0.11222 3.54358 39 - -
4320 1.38629 1.38629 1.38629 1.38629
4321 0.03591 4.03766 4.03766 1.46634 0.26236 1.09861 0.40547
4322 40 0.13599 3.42610 2.83161 3.33214 40 - -
4323 1.38629 1.38629 1.38629 1.38629
4324 0.03591 4.03766 4.03766 1.46634 0.26236 1.09861 0.40547
4325 41 0.13599 3.42610 2.83161 3.33214 41 - -
4326 1.38629 1.38629 1.38629 1.38629
4327 0.03591 4.03766 4.03766 1.46634 0.26236 1.09861 0.40547
4328 42 2.97924 3.63406 0.11222 3.54358 42 - -
4329 1.38629 1.38629 1.38629 1.38629
4330 0.03591 4.03766 4.03766 1.46634 0.26236 1.09861 0.40547
4331 43 0.13599 3.42610 2.83161 3.33214 43 - -
4332 1.38629 1.38629 1.38629 1.38629
4333 0.03591 4.03766 4.03766 1.46634 0.26236 1.09861 0.40547
4334 44 0.13599 3.42610 2.83161 3.33214 44 - -
4335 1.38629 1.38629 1.38629 1.38629
4336 0.03591 4.03766 4.03766 1.46634 0.26236 1.09861 0.40547
4337 45 3.48585 0.12409 3.53304 2.86723 45 - -
4338 1.38629 1.38629 1.38629 1.38629
4339 0.01812 4.01987 * 1.46634 0.26236 0.00000 *
4340 //
4341 HMMER3/b [3.0 | March 2010]
4342 NAME 4_LSU_Marchantiophyta_4_LSU_start_eight_long
4343 LENG 45
4344 ALPH DNA
4345 RF no
4346 CS no
4347 MAP yes
4348 DATE Wed Jan 25 18:26:42 2012
4349 NSEQ 3
4350 EFFN 3.000000
4351 CKSUM 105693907
4352 STATS LOCAL MSV -8.1416 0.72054
4353 STATS LOCAL VITERBI -7.6064 0.72054
4354 STATS LOCAL FORWARD -3.9951 0.72054
4355 HMM A C G T
4356 m->m m->i m->d i->m i->i d->m d->d
4357 COMPO 1.27697 1.35997 1.37204 1.55656
4358 1.38629 1.38629 1.38629 1.38629
4359 0.03922 3.95124 3.95124 1.46634 0.26236 0.00000 *
4360 1 2.86982 3.47591 0.13017 3.36931 1 - -
4361 1.38629 1.38629 1.38629 1.38629
4362 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
4363 2 2.97980 2.52563 3.03204 0.19727 2 - -
4364 1.38629 1.38629 1.38629 1.38629
4365 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
4366 3 2.97980 2.52563 3.03204 0.19727 3 - -
4367 1.38629 1.38629 1.38629 1.38629
4368 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
4369 4 2.86982 3.47591 0.13017 3.36931 4 - -
4370 1.38629 1.38629 1.38629 1.38629
4371 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
4372 5 2.86982 3.47591 0.13017 3.36931 5 - -
4373 1.38629 1.38629 1.38629 1.38629
4374 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
4375 6 0.15719 3.27118 2.73043 3.16274 6 - -
4376 1.38629 1.38629 1.38629 1.38629
4377 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
4378 7 3.30705 0.14631 3.36166 2.73626 7 - -
4379 1.38629 1.38629 1.38629 1.38629
4380 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
4381 8 3.30705 0.14631 3.36166 2.73626 8 - -
4382 1.38629 1.38629 1.38629 1.38629
4383 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
4384 9 2.97980 2.52563 3.03204 0.19727 9 - -
4385 1.38629 1.38629 1.38629 1.38629
4386 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
4387 10 3.30705 0.14631 3.36166 2.73626 10 - -
4388 1.38629 1.38629 1.38629 1.38629
4389 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
4390 11 0.15719 3.27118 2.73043 3.16274 11 - -
4391 1.38629 1.38629 1.38629 1.38629
4392 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
4393 12 2.86982 3.47591 0.13017 3.36931 12 - -
4394 1.38629 1.38629 1.38629 1.38629
4395 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
4396 13 0.15719 3.27118 2.73043 3.16274 13 - -
4397 1.38629 1.38629 1.38629 1.38629
4398 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
4399 14 2.97980 2.52563 3.03204 0.19727 14 - -
4400 1.38629 1.38629 1.38629 1.38629
4401 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
4402 15 3.30705 0.14631 3.36166 2.73626 15 - -
4403 1.38629 1.38629 1.38629 1.38629
4404 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
4405 16 0.15719 3.27118 2.73043 3.16274 16 - -
4406 1.38629 1.38629 1.38629 1.38629
4407 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
4408 17 2.86982 3.47591 0.13017 3.36931 17 - -
4409 1.38629 1.38629 1.38629 1.38629
4410 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
4411 18 2.86982 3.47591 0.13017 3.36931 18 - -
4412 1.38629 1.38629 1.38629 1.38629
4413 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
4414 19 3.30705 0.14631 3.36166 2.73626 19 - -
4415 1.38629 1.38629 1.38629 1.38629
4416 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
4417 20 0.15719 3.27118 2.73043 3.16274 20 - -
4418 1.38629 1.38629 1.38629 1.38629
4419 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
4420 21 0.15719 3.27118 2.73043 3.16274 21 - -
4421 1.38629 1.38629 1.38629 1.38629
4422 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
4423 22 2.86982 3.47591 0.13017 3.36931 22 - -
4424 1.38629 1.38629 1.38629 1.38629
4425 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
4426 23 0.15719 3.27118 2.73043 3.16274 23 - -
4427 1.38629 1.38629 1.38629 1.38629
4428 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
4429 24 3.30705 0.14631 3.36166 2.73626 24 - -
4430 1.38629 1.38629 1.38629 1.38629
4431 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
4432 25 2.43223 0.62271 2.50508 1.22417 25 - -
4433 1.38629 1.38629 1.38629 1.38629
4434 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
4435 26 0.15719 3.27118 2.73043 3.16274 26 - -
4436 1.38629 1.38629 1.38629 1.38629
4437 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
4438 27 3.30705 0.14631 3.36166 2.73626 27 - -
4439 1.38629 1.38629 1.38629 1.38629
4440 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
4441 28 3.30705 0.14631 3.36166 2.73626 28 - -
4442 1.38629 1.38629 1.38629 1.38629
4443 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
4444 29 3.30705 0.14631 3.36166 2.73626 29 - -
4445 1.38629 1.38629 1.38629 1.38629
4446 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
4447 30 2.86982 3.47591 0.13017 3.36931 30 - -
4448 1.38629 1.38629 1.38629 1.38629
4449 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
4450 31 3.30705 0.14631 3.36166 2.73626 31 - -
4451 1.38629 1.38629 1.38629 1.38629
4452 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
4453 32 2.97980 2.52563 3.03204 0.19727 32 - -
4454 1.38629 1.38629 1.38629 1.38629
4455 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
4456 33 2.86982 3.47591 0.13017 3.36931 33 - -
4457 1.38629 1.38629 1.38629 1.38629
4458 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
4459 34 0.15719 3.27118 2.73043 3.16274 34 - -
4460 1.38629 1.38629 1.38629 1.38629
4461 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
4462 35 2.86982 3.47591 0.13017 3.36931 35 - -
4463 1.38629 1.38629 1.38629 1.38629
4464 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
4465 36 2.97980 2.52563 3.03204 0.19727 36 - -
4466 1.38629 1.38629 1.38629 1.38629
4467 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
4468 37 2.97980 2.52563 3.03204 0.19727 37 - -
4469 1.38629 1.38629 1.38629 1.38629
4470 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
4471 38 2.97980 2.52563 3.03204 0.19727 38 - -
4472 1.38629 1.38629 1.38629 1.38629
4473 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
4474 39 0.15719 3.27118 2.73043 3.16274 39 - -
4475 1.38629 1.38629 1.38629 1.38629
4476 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
4477 40 0.15719 3.27118 2.73043 3.16274 40 - -
4478 1.38629 1.38629 1.38629 1.38629
4479 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
4480 41 2.86982 3.47591 0.13017 3.36931 41 - -
4481 1.38629 1.38629 1.38629 1.38629
4482 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
4483 42 3.30705 0.14631 3.36166 2.73626 42 - -
4484 1.38629 1.38629 1.38629 1.38629
4485 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
4486 43 0.15719 3.27118 2.73043 3.16274 43 - -
4487 1.38629 1.38629 1.38629 1.38629
4488 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
4489 44 2.97980 2.52563 3.03204 0.19727 44 - -
4490 1.38629 1.38629 1.38629 1.38629
4491 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
4492 45 0.15719 3.27118 2.73043 3.16274 45 - -
4493 1.38629 1.38629 1.38629 1.38629
4494 0.01980 3.93183 * 1.46634 0.26236 0.00000 *
4495 //
4496 HMMER3/b [3.0 | March 2010]
4497 NAME 4_LSU_Marchantiophyta_4_LSU_start_five_long
4498 LENG 45
4499 ALPH DNA
4500 RF no
4501 CS no
4502 MAP yes
4503 DATE Wed Jan 25 18:26:11 2012
4504 NSEQ 15
4505 EFFN 3.204346
4506 CKSUM 1688665315
4507 STATS LOCAL MSV -8.1859 0.71932
4508 STATS LOCAL VITERBI -7.5786 0.71932
4509 STATS LOCAL FORWARD -4.0935 0.71932
4510 HMM A C G T
4511 m->m m->i m->d i->m i->i d->m d->d
4512 COMPO 1.28069 1.26783 1.45149 1.57749
4513 1.38629 1.38629 1.38629 1.38629
4514 0.03771 3.98979 3.98979 1.46634 0.26236 0.00000 *
4515 1 3.04977 2.57040 3.09940 0.18507 1 - -
4516 1.38629 1.38629 1.38629 1.38629
4517 0.03771 3.98979 3.98979 1.46634 0.26236 1.09861 0.40547
4518 2 3.04977 2.57040 3.09940 0.18507 2 - -
4519 1.38629 1.38629 1.38629 1.38629
4520 0.03771 3.98979 3.98979 1.46634 0.26236 1.09861 0.40547
4521 3 3.38853 0.13565 3.43985 2.79643 3 - -
4522 1.38629 1.38629 1.38629 1.38629
4523 0.03771 3.98979 3.98979 1.46634 0.26236 1.09861 0.40547
4524 4 2.92038 3.54839 0.12156 3.44902 4 - -
4525 1.38629 1.38629 1.38629 1.38629
4526 0.03771 3.98979 3.98979 1.46634 0.26236 1.09861 0.40547
4527 5 2.92038 3.54839 0.12156 3.44902 5 - -
4528 1.38629 1.38629 1.38629 1.38629
4529 0.03771 3.98979 3.98979 1.46634 0.26236 1.09861 0.40547
4530 6 0.14711 3.34162 2.77675 3.23965 6 - -
4531 1.38629 1.38629 1.38629 1.38629
4532 0.03771 3.98979 3.98979 1.46634 0.26236 1.09861 0.40547
4533 7 3.38853 0.13565 3.43985 2.79643 7 - -
4534 1.38629 1.38629 1.38629 1.38629
4535 0.03771 3.98979 3.98979 1.46634 0.26236 1.09861 0.40547
4536 8 3.38853 0.13565 3.43985 2.79643 8 - -
4537 1.38629 1.38629 1.38629 1.38629
4538 0.03771 3.98979 3.98979 1.46634 0.26236 1.09861 0.40547
4539 9 3.04977 2.57040 3.09940 0.18507 9 - -
4540 1.38629 1.38629 1.38629 1.38629
4541 0.03771 3.98979 3.98979 1.46634 0.26236 1.09861 0.40547
4542 10 3.38853 0.13565 3.43985 2.79643 10 - -
4543 1.38629 1.38629 1.38629 1.38629
4544 0.03771 3.98979 3.98979 1.46634 0.26236 1.09861 0.40547
4545 11 0.14711 3.34162 2.77675 3.23965 11 - -
4546 1.38629 1.38629 1.38629 1.38629
4547 0.03771 3.98979 3.98979 1.46634 0.26236 1.09861 0.40547
4548 12 2.92038 3.54839 0.12156 3.44902 12 - -
4549 1.38629 1.38629 1.38629 1.38629
4550 0.03771 3.98979 3.98979 1.46634 0.26236 1.09861 0.40547
4551 13 0.14711 3.34162 2.77675 3.23965 13 - -
4552 1.38629 1.38629 1.38629 1.38629
4553 0.03771 3.98979 3.98979 1.46634 0.26236 1.09861 0.40547
4554 14 3.04977 2.57040 3.09940 0.18507 14 - -
4555 1.38629 1.38629 1.38629 1.38629
4556 0.03771 3.98979 3.98979 1.46634 0.26236 1.09861 0.40547
4557 15 3.38853 0.13565 3.43985 2.79643 15 - -
4558 1.38629 1.38629 1.38629 1.38629
4559 0.03771 3.98979 3.98979 1.46634 0.26236 1.09861 0.40547
4560 16 0.14711 3.34162 2.77675 3.23965 16 - -
4561 1.38629 1.38629 1.38629 1.38629
4562 0.03771 3.98979 3.98979 1.46634 0.26236 1.09861 0.40547
4563 17 2.92038 3.54839 0.12156 3.44902 17 - -
4564 1.38629 1.38629 1.38629 1.38629
4565 0.03771 3.98979 3.98979 1.46634 0.26236 1.09861 0.40547
4566 18 2.92038 3.54839 0.12156 3.44902 18 - -
4567 1.38629 1.38629 1.38629 1.38629
4568 0.03771 3.98979 3.98979 1.46634 0.26236 1.09861 0.40547
4569 19 3.38853 0.13565 3.43985 2.79643 19 - -
4570 1.38629 1.38629 1.38629 1.38629
4571 0.03771 3.98979 3.98979 1.46634 0.26236 1.09861 0.40547
4572 20 0.14711 3.34162 2.77675 3.23965 20 - -
4573 1.38629 1.38629 1.38629 1.38629
4574 0.03771 3.98979 3.98979 1.46634 0.26236 1.09861 0.40547
4575 21 0.14711 3.34162 2.77675 3.23965 21 - -
4576 1.38629 1.38629 1.38629 1.38629
4577 0.03771 3.98979 3.98979 1.46634 0.26236 1.09861 0.40547
4578 22 2.92038 3.54839 0.12156 3.44902 22 - -
4579 1.38629 1.38629 1.38629 1.38629
4580 0.03771 3.98979 3.98979 1.46634 0.26236 1.09861 0.40547
4581 23 0.14711 3.34162 2.77675 3.23965 23 - -
4582 1.38629 1.38629 1.38629 1.38629
4583 0.03771 3.98979 3.98979 1.46634 0.26236 1.09861 0.40547
4584 24 3.38853 0.13565 3.43985 2.79643 24 - -
4585 1.38629 1.38629 1.38629 1.38629
4586 0.03771 3.98979 3.98979 1.46634 0.26236 1.09861 0.40547
4587 25 3.38853 0.13565 3.43985 2.79643 25 - -
4588 1.38629 1.38629 1.38629 1.38629
4589 0.03771 3.98979 3.98979 1.46634 0.26236 1.09861 0.40547
4590 26 0.14711 3.34162 2.77675 3.23965 26 - -
4591 1.38629 1.38629 1.38629 1.38629
4592 0.03771 3.98979 3.98979 1.46634 0.26236 1.09861 0.40547
4593 27 3.38853 0.13565 3.43985 2.79643 27 - -
4594 1.38629 1.38629 1.38629 1.38629
4595 0.03771 3.98979 3.98979 1.46634 0.26236 1.09861 0.40547
4596 28 3.38853 0.13565 3.43985 2.79643 28 - -
4597 1.38629 1.38629 1.38629 1.38629
4598 0.03771 3.98979 3.98979 1.46634 0.26236 1.09861 0.40547
4599 29 3.38853 0.13565 3.43985 2.79643 29 - -
4600 1.38629 1.38629 1.38629 1.38629
4601 0.03771 3.98979 3.98979 1.46634 0.26236 1.09861 0.40547
4602 30 2.92038 3.54839 0.12156 3.44902 30 - -
4603 1.38629 1.38629 1.38629 1.38629
4604 0.03771 3.98979 3.98979 1.46634 0.26236 1.09861 0.40547
4605 31 3.38853 0.13565 3.43985 2.79643 31 - -
4606 1.38629 1.38629 1.38629 1.38629
4607 0.03771 3.98979 3.98979 1.46634 0.26236 1.09861 0.40547
4608 32 3.04977 2.57040 3.09940 0.18507 32 - -
4609 1.38629 1.38629 1.38629 1.38629
4610 0.03771 3.98979 3.98979 1.46634 0.26236 1.09861 0.40547
4611 33 2.92038 3.54839 0.12156 3.44902 33 - -
4612 1.38629 1.38629 1.38629 1.38629
4613 0.03771 3.98979 3.98979 1.46634 0.26236 1.09861 0.40547
4614 34 0.14711 3.34162 2.77675 3.23965 34 - -
4615 1.38629 1.38629 1.38629 1.38629
4616 0.03771 3.98979 3.98979 1.46634 0.26236 1.09861 0.40547
4617 35 2.92038 3.54839 0.12156 3.44902 35 - -
4618 1.38629 1.38629 1.38629 1.38629
4619 0.03771 3.98979 3.98979 1.46634 0.26236 1.09861 0.40547
4620 36 3.04977 2.57040 3.09940 0.18507 36 - -
4621 1.38629 1.38629 1.38629 1.38629
4622 0.03771 3.98979 3.98979 1.46634 0.26236 1.09861 0.40547
4623 37 3.04977 2.57040 3.09940 0.18507 37 - -
4624 1.38629 1.38629 1.38629 1.38629
4625 0.03771 3.98979 3.98979 1.46634 0.26236 1.09861 0.40547
4626 38 3.04977 2.57040 3.09940 0.18507 38 - -
4627 1.38629 1.38629 1.38629 1.38629
4628 0.03771 3.98979 3.98979 1.46634 0.26236 1.09861 0.40547
4629 39 0.14711 3.34162 2.77675 3.23965 39 - -
4630 1.38629 1.38629 1.38629 1.38629
4631 0.03771 3.98979 3.98979 1.46634 0.26236 1.09861 0.40547
4632 40 0.14711 3.34162 2.77675 3.23965 40 - -
4633 1.38629 1.38629 1.38629 1.38629
4634 0.03771 3.98979 3.98979 1.46634 0.26236 1.09861 0.40547
4635 41 2.92038 3.54839 0.12156 3.44902 41 - -
4636 1.38629 1.38629 1.38629 1.38629
4637 0.03771 3.98979 3.98979 1.46634 0.26236 1.09861 0.40547
4638 42 3.38853 0.13565 3.43985 2.79643 42 - -
4639 1.38629 1.38629 1.38629 1.38629
4640 0.03771 3.98979 3.98979 1.46634 0.26236 1.09861 0.40547
4641 43 0.14711 3.34162 2.77675 3.23965 43 - -
4642 1.38629 1.38629 1.38629 1.38629
4643 0.03771 3.98979 3.98979 1.46634 0.26236 1.09861 0.40547
4644 44 3.04977 2.57040 3.09940 0.18507 44 - -
4645 1.38629 1.38629 1.38629 1.38629
4646 0.03771 3.98979 3.98979 1.46634 0.26236 1.09861 0.40547
4647 45 0.14711 3.34162 2.77675 3.23965 45 - -
4648 1.38629 1.38629 1.38629 1.38629
4649 0.01903 3.97111 * 1.46634 0.26236 0.00000 *
4650 //
4651 HMMER3/b [3.0 | March 2010]
4652 NAME 4_LSU_Marchantiophyta_4_LSU_start_four_long
4653 LENG 45
4654 ALPH DNA
4655 RF no
4656 CS no
4657 MAP yes
4658 DATE Wed Jan 25 18:26:03 2012
4659 NSEQ 6
4660 EFFN 3.196289
4661 CKSUM 96037354
4662 STATS LOCAL MSV -8.2136 0.71931
4663 STATS LOCAL VITERBI -7.6391 0.71931
4664 STATS LOCAL FORWARD -4.0258 0.71931
4665 HMM A C G T
4666 m->m m->i m->d i->m i->i d->m d->d
4667 COMPO 1.22379 1.20916 1.52738 1.65897
4668 1.38629 1.38629 1.38629 1.38629
4669 0.03777 3.98830 3.98830 1.46634 0.26236 0.00000 *
4670 1 3.38542 0.13604 3.43688 2.79415 1 - -
4671 1.38629 1.38629 1.38629 1.38629
4672 0.03777 3.98830 3.98830 1.46634 0.26236 1.09861 0.40547
4673 2 3.04708 2.56869 3.09681 0.18552 2 - -
4674 1.38629 1.38629 1.38629 1.38629
4675 0.03777 3.98830 3.98830 1.46634 0.26236 1.09861 0.40547
4676 3 3.38542 0.13604 3.43688 2.79415 3 - -
4677 1.38629 1.38629 1.38629 1.38629
4678 0.03777 3.98830 3.98830 1.46634 0.26236 1.09861 0.40547
4679 4 2.91847 3.54565 0.12187 3.44599 4 - -
4680 1.38629 1.38629 1.38629 1.38629
4681 0.03777 3.98830 3.98830 1.46634 0.26236 1.09861 0.40547
4682 5 2.91847 3.54565 0.12187 3.44599 5 - -
4683 1.38629 1.38629 1.38629 1.38629
4684 0.03777 3.98830 3.98830 1.46634 0.26236 1.09861 0.40547
4685 6 0.14748 3.33893 2.77499 3.23671 6 - -
4686 1.38629 1.38629 1.38629 1.38629
4687 0.03777 3.98830 3.98830 1.46634 0.26236 1.09861 0.40547
4688 7 3.38542 0.13604 3.43688 2.79415 7 - -
4689 1.38629 1.38629 1.38629 1.38629
4690 0.03777 3.98830 3.98830 1.46634 0.26236 1.09861 0.40547
4691 8 3.38542 0.13604 3.43688 2.79415 8 - -
4692 1.38629 1.38629 1.38629 1.38629
4693 0.03777 3.98830 3.98830 1.46634 0.26236 1.09861 0.40547
4694 9 3.04708 2.56869 3.09681 0.18552 9 - -
4695 1.38629 1.38629 1.38629 1.38629
4696 0.03777 3.98830 3.98830 1.46634 0.26236 1.09861 0.40547
4697 10 3.38542 0.13604 3.43688 2.79415 10 - -
4698 1.38629 1.38629 1.38629 1.38629
4699 0.03777 3.98830 3.98830 1.46634 0.26236 1.09861 0.40547
4700 11 0.14748 3.33893 2.77499 3.23671 11 - -
4701 1.38629 1.38629 1.38629 1.38629
4702 0.03777 3.98830 3.98830 1.46634 0.26236 1.09861 0.40547
4703 12 2.91847 3.54565 0.12187 3.44599 12 - -
4704 1.38629 1.38629 1.38629 1.38629
4705 0.03777 3.98830 3.98830 1.46634 0.26236 1.09861 0.40547
4706 13 0.14748 3.33893 2.77499 3.23671 13 - -
4707 1.38629 1.38629 1.38629 1.38629
4708 0.03777 3.98830 3.98830 1.46634 0.26236 1.09861 0.40547
4709 14 3.04708 2.56869 3.09681 0.18552 14 - -
4710 1.38629 1.38629 1.38629 1.38629
4711 0.03777 3.98830 3.98830 1.46634 0.26236 1.09861 0.40547
4712 15 3.38542 0.13604 3.43688 2.79415 15 - -
4713 1.38629 1.38629 1.38629 1.38629
4714 0.03777 3.98830 3.98830 1.46634 0.26236 1.09861 0.40547
4715 16 0.14748 3.33893 2.77499 3.23671 16 - -
4716 1.38629 1.38629 1.38629 1.38629
4717 0.03777 3.98830 3.98830 1.46634 0.26236 1.09861 0.40547
4718 17 2.91847 3.54565 0.12187 3.44599 17 - -
4719 1.38629 1.38629 1.38629 1.38629
4720 0.03777 3.98830 3.98830 1.46634 0.26236 1.09861 0.40547
4721 18 0.14748 3.33893 2.77499 3.23671 18 - -
4722 1.38629 1.38629 1.38629 1.38629
4723 0.03777 3.98830 3.98830 1.46634 0.26236 1.09861 0.40547
4724 19 3.38542 0.13604 3.43688 2.79415 19 - -
4725 1.38629 1.38629 1.38629 1.38629
4726 0.03777 3.98830 3.98830 1.46634 0.26236 1.09861 0.40547
4727 20 0.14748 3.33893 2.77499 3.23671 20 - -
4728 1.38629 1.38629 1.38629 1.38629
4729 0.03777 3.98830 3.98830 1.46634 0.26236 1.09861 0.40547
4730 21 0.14748 3.33893 2.77499 3.23671 21 - -
4731 1.38629 1.38629 1.38629 1.38629
4732 0.03777 3.98830 3.98830 1.46634 0.26236 1.09861 0.40547
4733 22 2.91847 3.54565 0.12187 3.44599 22 - -
4734 1.38629 1.38629 1.38629 1.38629
4735 0.03777 3.98830 3.98830 1.46634 0.26236 1.09861 0.40547
4736 23 0.14748 3.33893 2.77499 3.23671 23 - -
4737 1.38629 1.38629 1.38629 1.38629
4738 0.03777 3.98830 3.98830 1.46634 0.26236 1.09861 0.40547
4739 24 3.38542 0.13604 3.43688 2.79415 24 - -
4740 1.38629 1.38629 1.38629 1.38629
4741 0.03777 3.98830 3.98830 1.46634 0.26236 1.09861 0.40547
4742 25 3.38542 0.13604 3.43688 2.79415 25 - -
4743 1.38629 1.38629 1.38629 1.38629
4744 0.03777 3.98830 3.98830 1.46634 0.26236 1.09861 0.40547
4745 26 0.14748 3.33893 2.77499 3.23671 26 - -
4746 1.38629 1.38629 1.38629 1.38629
4747 0.03777 3.98830 3.98830 1.46634 0.26236 1.09861 0.40547
4748 27 3.38542 0.13604 3.43688 2.79415 27 - -
4749 1.38629 1.38629 1.38629 1.38629
4750 0.03777 3.98830 3.98830 1.46634 0.26236 1.09861 0.40547
4751 28 3.38542 0.13604 3.43688 2.79415 28 - -
4752 1.38629 1.38629 1.38629 1.38629
4753 0.03777 3.98830 3.98830 1.46634 0.26236 1.09861 0.40547
4754 29 3.38542 0.13604 3.43688 2.79415 29 - -
4755 1.38629 1.38629 1.38629 1.38629
4756 0.03777 3.98830 3.98830 1.46634 0.26236 1.09861 0.40547
4757 30 2.91847 3.54565 0.12187 3.44599 30 - -
4758 1.38629 1.38629 1.38629 1.38629
4759 0.03777 3.98830 3.98830 1.46634 0.26236 1.09861 0.40547
4760 31 3.38542 0.13604 3.43688 2.79415 31 - -
4761 1.38629 1.38629 1.38629 1.38629
4762 0.03777 3.98830 3.98830 1.46634 0.26236 1.09861 0.40547
4763 32 3.04708 2.56869 3.09681 0.18552 32 - -
4764 1.38629 1.38629 1.38629 1.38629
4765 0.03777 3.98830 3.98830 1.46634 0.26236 1.09861 0.40547
4766 33 2.91847 3.54565 0.12187 3.44599 33 - -
4767 1.38629 1.38629 1.38629 1.38629
4768 0.03777 3.98830 3.98830 1.46634 0.26236 1.09861 0.40547
4769 34 0.14748 3.33893 2.77499 3.23671 34 - -
4770 1.38629 1.38629 1.38629 1.38629
4771 0.03777 3.98830 3.98830 1.46634 0.26236 1.09861 0.40547
4772 35 2.91847 3.54565 0.12187 3.44599 35 - -
4773 1.38629 1.38629 1.38629 1.38629
4774 0.03777 3.98830 3.98830 1.46634 0.26236 1.09861 0.40547
4775 36 3.04708 2.56869 3.09681 0.18552 36 - -
4776 1.38629 1.38629 1.38629 1.38629
4777 0.03777 3.98830 3.98830 1.46634 0.26236 1.09861 0.40547
4778 37 3.04708 2.56869 3.09681 0.18552 37 - -
4779 1.38629 1.38629 1.38629 1.38629
4780 0.03777 3.98830 3.98830 1.46634 0.26236 1.09861 0.40547
4781 38 3.04708 2.56869 3.09681 0.18552 38 - -
4782 1.38629 1.38629 1.38629 1.38629
4783 0.03777 3.98830 3.98830 1.46634 0.26236 1.09861 0.40547
4784 39 0.14748 3.33893 2.77499 3.23671 39 - -
4785 1.38629 1.38629 1.38629 1.38629
4786 0.03777 3.98830 3.98830 1.46634 0.26236 1.09861 0.40547
4787 40 0.14748 3.33893 2.77499 3.23671 40 - -
4788 1.38629 1.38629 1.38629 1.38629
4789 0.03777 3.98830 3.98830 1.46634 0.26236 1.09861 0.40547
4790 41 2.91847 3.54565 0.12187 3.44599 41 - -
4791 1.38629 1.38629 1.38629 1.38629
4792 0.03777 3.98830 3.98830 1.46634 0.26236 1.09861 0.40547
4793 42 3.38542 0.13604 3.43688 2.79415 42 - -
4794 1.38629 1.38629 1.38629 1.38629
4795 0.03777 3.98830 3.98830 1.46634 0.26236 1.09861 0.40547
4796 43 0.14748 3.33893 2.77499 3.23671 43 - -
4797 1.38629 1.38629 1.38629 1.38629
4798 0.03777 3.98830 3.98830 1.46634 0.26236 1.09861 0.40547
4799 44 3.04708 2.56869 3.09681 0.18552 44 - -
4800 1.38629 1.38629 1.38629 1.38629
4801 0.03777 3.98830 3.98830 1.46634 0.26236 1.09861 0.40547
4802 45 0.14748 3.33893 2.77499 3.23671 45 - -
4803 1.38629 1.38629 1.38629 1.38629
4804 0.01906 3.96959 * 1.46634 0.26236 0.00000 *
4805 //
4806 HMMER3/b [3.0 | March 2010]
4807 NAME 4_LSU_Marchantiophyta_4_LSU_start_nine_long
4808 LENG 45
4809 ALPH DNA
4810 RF no
4811 CS no
4812 MAP yes
4813 DATE Wed Jan 25 18:26:52 2012
4814 NSEQ 2
4815 EFFN 2.000000
4816 CKSUM 647530765
4817 STATS LOCAL MSV -7.4739 0.72783
4818 STATS LOCAL VITERBI -8.0723 0.72783
4819 STATS LOCAL FORWARD -3.4690 0.72783
4820 HMM A C G T
4821 m->m m->i m->d i->m i->i d->m d->d
4822 COMPO 1.23999 1.34853 1.43256 1.54979
4823 1.38629 1.38629 1.38629 1.38629
4824 0.04879 3.73767 3.73767 1.46634 0.26236 0.00000 *
4825 1 2.81865 0.23582 2.88868 2.35662 1 - -
4826 1.38629 1.38629 1.38629 1.38629
4827 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
4828 2 2.57915 2.25909 2.64442 0.28946 2 - -
4829 1.38629 1.38629 1.38629 1.38629
4830 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
4831 3 0.23862 2.84929 2.43386 2.70756 3 - -
4832 1.38629 1.38629 1.38629 1.38629
4833 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
4834 4 2.53331 3.02441 0.20344 2.88069 4 - -
4835 1.38629 1.38629 1.38629 1.38629
4836 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
4837 5 2.53331 3.02441 0.20344 2.88069 5 - -
4838 1.38629 1.38629 1.38629 1.38629
4839 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
4840 6 0.23862 2.84929 2.43386 2.70756 6 - -
4841 1.38629 1.38629 1.38629 1.38629
4842 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
4843 7 2.81865 0.23582 2.88868 2.35662 7 - -
4844 1.38629 1.38629 1.38629 1.38629
4845 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
4846 8 2.81865 0.23582 2.88868 2.35662 8 - -
4847 1.38629 1.38629 1.38629 1.38629
4848 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
4849 9 2.57915 2.25909 2.64442 0.28946 9 - -
4850 1.38629 1.38629 1.38629 1.38629
4851 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
4852 10 2.81865 0.23582 2.88868 2.35662 10 - -
4853 1.38629 1.38629 1.38629 1.38629
4854 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
4855 11 0.23862 2.84929 2.43386 2.70756 11 - -
4856 1.38629 1.38629 1.38629 1.38629
4857 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
4858 12 2.53331 3.02441 0.20344 2.88069 12 - -
4859 1.38629 1.38629 1.38629 1.38629
4860 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
4861 13 0.23862 2.84929 2.43386 2.70756 13 - -
4862 1.38629 1.38629 1.38629 1.38629
4863 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
4864 14 2.57915 2.25909 2.64442 0.28946 14 - -
4865 1.38629 1.38629 1.38629 1.38629
4866 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
4867 15 2.81865 0.23582 2.88868 2.35662 15 - -
4868 1.38629 1.38629 1.38629 1.38629
4869 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
4870 16 0.23862 2.84929 2.43386 2.70756 16 - -
4871 1.38629 1.38629 1.38629 1.38629
4872 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
4873 17 2.53331 3.02441 0.20344 2.88069 17 - -
4874 1.38629 1.38629 1.38629 1.38629
4875 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
4876 18 2.53331 3.02441 0.20344 2.88069 18 - -
4877 1.38629 1.38629 1.38629 1.38629
4878 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
4879 19 2.81865 0.23582 2.88868 2.35662 19 - -
4880 1.38629 1.38629 1.38629 1.38629
4881 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
4882 20 0.23862 2.84929 2.43386 2.70756 20 - -
4883 1.38629 1.38629 1.38629 1.38629
4884 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
4885 21 0.23862 2.84929 2.43386 2.70756 21 - -
4886 1.38629 1.38629 1.38629 1.38629
4887 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
4888 22 2.53331 3.02441 0.20344 2.88069 22 - -
4889 1.38629 1.38629 1.38629 1.38629
4890 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
4891 23 0.23862 2.84929 2.43386 2.70756 23 - -
4892 1.38629 1.38629 1.38629 1.38629
4893 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
4894 24 2.81865 0.23582 2.88868 2.35662 24 - -
4895 1.38629 1.38629 1.38629 1.38629
4896 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
4897 25 2.57915 2.25909 2.64442 0.28946 25 - -
4898 1.38629 1.38629 1.38629 1.38629
4899 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
4900 26 0.23862 2.84929 2.43386 2.70756 26 - -
4901 1.38629 1.38629 1.38629 1.38629
4902 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
4903 27 2.81865 0.23582 2.88868 2.35662 27 - -
4904 1.38629 1.38629 1.38629 1.38629
4905 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
4906 28 2.81865 0.23582 2.88868 2.35662 28 - -
4907 1.38629 1.38629 1.38629 1.38629
4908 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
4909 29 2.81865 0.23582 2.88868 2.35662 29 - -
4910 1.38629 1.38629 1.38629 1.38629
4911 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
4912 30 2.53331 3.02441 0.20344 2.88069 30 - -
4913 1.38629 1.38629 1.38629 1.38629
4914 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
4915 31 2.81865 0.23582 2.88868 2.35662 31 - -
4916 1.38629 1.38629 1.38629 1.38629
4917 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
4918 32 2.57915 2.25909 2.64442 0.28946 32 - -
4919 1.38629 1.38629 1.38629 1.38629
4920 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
4921 33 2.53331 3.02441 0.20344 2.88069 33 - -
4922 1.38629 1.38629 1.38629 1.38629
4923 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
4924 34 0.23862 2.84929 2.43386 2.70756 34 - -
4925 1.38629 1.38629 1.38629 1.38629
4926 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
4927 35 2.53331 3.02441 0.20344 2.88069 35 - -
4928 1.38629 1.38629 1.38629 1.38629
4929 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
4930 36 2.57915 2.25909 2.64442 0.28946 36 - -
4931 1.38629 1.38629 1.38629 1.38629
4932 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
4933 37 2.57915 2.25909 2.64442 0.28946 37 - -
4934 1.38629 1.38629 1.38629 1.38629
4935 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
4936 38 2.57915 2.25909 2.64442 0.28946 38 - -
4937 1.38629 1.38629 1.38629 1.38629
4938 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
4939 39 0.23862 2.84929 2.43386 2.70756 39 - -
4940 1.38629 1.38629 1.38629 1.38629
4941 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
4942 40 0.23862 2.84929 2.43386 2.70756 40 - -
4943 1.38629 1.38629 1.38629 1.38629
4944 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
4945 41 2.53331 3.02441 0.20344 2.88069 41 - -
4946 1.38629 1.38629 1.38629 1.38629
4947 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
4948 42 2.81865 0.23582 2.88868 2.35662 42 - -
4949 1.38629 1.38629 1.38629 1.38629
4950 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
4951 43 0.23862 2.84929 2.43386 2.70756 43 - -
4952 1.38629 1.38629 1.38629 1.38629
4953 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
4954 44 2.57915 2.25909 2.64442 0.28946 44 - -
4955 1.38629 1.38629 1.38629 1.38629
4956 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
4957 45 0.23862 2.84929 2.43386 2.70756 45 - -
4958 1.38629 1.38629 1.38629 1.38629
4959 0.02469 3.71357 * 1.46634 0.26236 0.00000 *
4960 //
4961 HMMER3/b [3.0 | March 2010]
4962 NAME 4_LSU_Marchantiophyta_4_LSU_start_one_long
4963 LENG 45
4964 ALPH DNA
4965 RF no
4966 CS no
4967 MAP yes
4968 DATE Wed Jan 25 18:25:39 2012
4969 NSEQ 20
4970 EFFN 3.540039
4971 CKSUM 3998707778
4972 STATS LOCAL MSV -7.6760 0.71934
4973 STATS LOCAL VITERBI -7.5419 0.71934
4974 STATS LOCAL FORWARD -4.1193 0.71934
4975 HMM A C G T
4976 m->m m->i m->d i->m i->i d->m d->d
4977 COMPO 1.27980 1.23983 1.44541 1.62545
4978 1.38629 1.38629 1.38629 1.38629
4979 0.03546 4.05005 4.05005 1.46634 0.26236 0.00000 *
4980 1 2.46911 0.73562 2.54114 1.02903 1 - -
4981 1.38629 1.38629 1.38629 1.38629
4982 0.03546 4.05005 4.05005 1.46634 0.26236 1.09861 0.40547
4983 2 3.15689 2.63850 3.20241 0.16805 2 - -
4984 1.38629 1.38629 1.38629 1.38629
4985 0.03546 4.05005 4.05005 1.46634 0.26236 1.09861 0.40547
4986 3 3.11759 0.21933 3.17647 2.19873 3 - -
4987 1.38629 1.38629 1.38629 1.38629
4988 0.03546 4.05005 4.05005 1.46634 0.26236 1.09861 0.40547
4989 4 2.99379 3.65542 0.11002 3.56722 4 - -
4990 1.38629 1.38629 1.38629 1.38629
4991 0.03546 4.05005 4.05005 1.46634 0.26236 1.09861 0.40547
4992 5 2.99379 3.65542 0.11002 3.56722 5 - -
4993 1.38629 1.38629 1.38629 1.38629
4994 0.03546 4.05005 4.05005 1.46634 0.26236 1.09861 0.40547
4995 6 0.13334 3.44739 2.84535 3.35549 6 - -
4996 1.38629 1.38629 1.38629 1.38629
4997 0.03546 4.05005 4.05005 1.46634 0.26236 1.09861 0.40547
4998 7 3.51029 0.12137 3.55641 2.88485 7 - -
4999 1.38629 1.38629 1.38629 1.38629
5000 0.03546 4.05005 4.05005 1.46634 0.26236 1.09861 0.40547
5001 8 3.51029 0.12137 3.55641 2.88485 8 - -
5002 1.38629 1.38629 1.38629 1.38629
5003 0.03546 4.05005 4.05005 1.46634 0.26236 1.09861 0.40547
5004 9 3.15689 2.63850 3.20241 0.16805 9 - -
5005 1.38629 1.38629 1.38629 1.38629
5006 0.03546 4.05005 4.05005 1.46634 0.26236 1.09861 0.40547
5007 10 3.51029 0.12137 3.55641 2.88485 10 - -
5008 1.38629 1.38629 1.38629 1.38629
5009 0.03546 4.05005 4.05005 1.46634 0.26236 1.09861 0.40547
5010 11 0.13334 3.44739 2.84535 3.35549 11 - -
5011 1.38629 1.38629 1.38629 1.38629
5012 0.03546 4.05005 4.05005 1.46634 0.26236 1.09861 0.40547
5013 12 2.99379 3.65542 0.11002 3.56722 12 - -
5014 1.38629 1.38629 1.38629 1.38629
5015 0.03546 4.05005 4.05005 1.46634 0.26236 1.09861 0.40547
5016 13 0.13334 3.44739 2.84535 3.35549 13 - -
5017 1.38629 1.38629 1.38629 1.38629
5018 0.03546 4.05005 4.05005 1.46634 0.26236 1.09861 0.40547
5019 14 3.15689 2.63850 3.20241 0.16805 14 - -
5020 1.38629 1.38629 1.38629 1.38629
5021 0.03546 4.05005 4.05005 1.46634 0.26236 1.09861 0.40547
5022 15 3.51029 0.12137 3.55641 2.88485 15 - -
5023 1.38629 1.38629 1.38629 1.38629
5024 0.03546 4.05005 4.05005 1.46634 0.26236 1.09861 0.40547
5025 16 0.32078 2.91982 1.83681 2.79446 16 - -
5026 1.38629 1.38629 1.38629 1.38629
5027 0.03546 4.05005 4.05005 1.46634 0.26236 1.09861 0.40547
5028 17 2.99379 3.65542 0.11002 3.56722 17 - -
5029 1.38629 1.38629 1.38629 1.38629
5030 0.03546 4.05005 4.05005 1.46634 0.26236 1.09861 0.40547
5031 18 2.33938 3.31208 0.19059 3.20151 18 - -
5032 1.38629 1.38629 1.38629 1.38629
5033 0.03546 4.05005 4.05005 1.46634 0.26236 1.09861 0.40547
5034 19 3.51029 0.12137 3.55641 2.88485 19 - -
5035 1.38629 1.38629 1.38629 1.38629
5036 0.03546 4.05005 4.05005 1.46634 0.26236 1.09861 0.40547
5037 20 0.13334 3.44739 2.84535 3.35549 20 - -
5038 1.38629 1.38629 1.38629 1.38629
5039 0.03546 4.05005 4.05005 1.46634 0.26236 1.09861 0.40547
5040 21 0.13334 3.44739 2.84535 3.35549 21 - -
5041 1.38629 1.38629 1.38629 1.38629
5042 0.03546 4.05005 4.05005 1.46634 0.26236 1.09861 0.40547
5043 22 2.99379 3.65542 0.11002 3.56722 22 - -
5044 1.38629 1.38629 1.38629 1.38629
5045 0.03546 4.05005 4.05005 1.46634 0.26236 1.09861 0.40547
5046 23 0.13334 3.44739 2.84535 3.35549 23 - -
5047 1.38629 1.38629 1.38629 1.38629
5048 0.03546 4.05005 4.05005 1.46634 0.26236 1.09861 0.40547
5049 24 3.51029 0.12137 3.55641 2.88485 24 - -
5050 1.38629 1.38629 1.38629 1.38629
5051 0.03546 4.05005 4.05005 1.46634 0.26236 1.09861 0.40547
5052 25 3.10712 0.22270 3.16631 2.18250 25 - -
5053 1.38629 1.38629 1.38629 1.38629
5054 0.03546 4.05005 4.05005 1.46634 0.26236 1.09861 0.40547
5055 26 0.13334 3.44739 2.84535 3.35549 26 - -
5056 1.38629 1.38629 1.38629 1.38629
5057 0.03546 4.05005 4.05005 1.46634 0.26236 1.09861 0.40547
5058 27 3.51029 0.12137 3.55641 2.88485 27 - -
5059 1.38629 1.38629 1.38629 1.38629
5060 0.03546 4.05005 4.05005 1.46634 0.26236 1.09861 0.40547
5061 28 3.51029 0.12137 3.55641 2.88485 28 - -
5062 1.38629 1.38629 1.38629 1.38629
5063 0.03546 4.05005 4.05005 1.46634 0.26236 1.09861 0.40547
5064 29 3.51029 0.12137 3.55641 2.88485 29 - -
5065 1.38629 1.38629 1.38629 1.38629
5066 0.03546 4.05005 4.05005 1.46634 0.26236 1.09861 0.40547
5067 30 2.99379 3.65542 0.11002 3.56722 30 - -
5068 1.38629 1.38629 1.38629 1.38629
5069 0.03546 4.05005 4.05005 1.46634 0.26236 1.09861 0.40547
5070 31 3.51029 0.12137 3.55641 2.88485 31 - -
5071 1.38629 1.38629 1.38629 1.38629
5072 0.03546 4.05005 4.05005 1.46634 0.26236 1.09861 0.40547
5073 32 2.91081 2.08007 2.96599 0.26249 32 - -
5074 1.38629 1.38629 1.38629 1.38629
5075 0.03546 4.05005 4.05005 1.46634 0.26236 1.09861 0.40547
5076 33 2.99379 3.65542 0.11002 3.56722 33 - -
5077 1.38629 1.38629 1.38629 1.38629
5078 0.03546 4.05005 4.05005 1.46634 0.26236 1.09861 0.40547
5079 34 0.13334 3.44739 2.84535 3.35549 34 - -
5080 1.38629 1.38629 1.38629 1.38629
5081 0.03546 4.05005 4.05005 1.46634 0.26236 1.09861 0.40547
5082 35 2.99379 3.65542 0.11002 3.56722 35 - -
5083 1.38629 1.38629 1.38629 1.38629
5084 0.03546 4.05005 4.05005 1.46634 0.26236 1.09861 0.40547
5085 36 3.15689 2.63850 3.20241 0.16805 36 - -
5086 1.38629 1.38629 1.38629 1.38629
5087 0.03546 4.05005 4.05005 1.46634 0.26236 1.09861 0.40547
5088 37 3.15689 2.63850 3.20241 0.16805 37 - -
5089 1.38629 1.38629 1.38629 1.38629
5090 0.03546 4.05005 4.05005 1.46634 0.26236 1.09861 0.40547
5091 38 3.15689 2.63850 3.20241 0.16805 38 - -
5092 1.38629 1.38629 1.38629 1.38629
5093 0.03546 4.05005 4.05005 1.46634 0.26236 1.09861 0.40547
5094 39 0.13334 3.44739 2.84535 3.35549 39 - -
5095 1.38629 1.38629 1.38629 1.38629
5096 0.03546 4.05005 4.05005 1.46634 0.26236 1.09861 0.40547
5097 40 0.13334 3.44739 2.84535 3.35549 40 - -
5098 1.38629 1.38629 1.38629 1.38629
5099 0.03546 4.05005 4.05005 1.46634 0.26236 1.09861 0.40547
5100 41 2.99379 3.65542 0.11002 3.56722 41 - -
5101 1.38629 1.38629 1.38629 1.38629
5102 0.03546 4.05005 4.05005 1.46634 0.26236 1.09861 0.40547
5103 42 3.51029 0.12137 3.55641 2.88485 42 - -
5104 1.38629 1.38629 1.38629 1.38629
5105 0.03546 4.05005 4.05005 1.46634 0.26236 1.09861 0.40547
5106 43 0.13334 3.44739 2.84535 3.35549 43 - -
5107 1.38629 1.38629 1.38629 1.38629
5108 0.03546 4.05005 4.05005 1.46634 0.26236 1.09861 0.40547
5109 44 3.15689 2.63850 3.20241 0.16805 44 - -
5110 1.38629 1.38629 1.38629 1.38629
5111 0.03546 4.05005 4.05005 1.46634 0.26236 1.09861 0.40547
5112 45 0.13334 3.44739 2.84535 3.35549 45 - -
5113 1.38629 1.38629 1.38629 1.38629
5114 0.01789 4.03248 * 1.46634 0.26236 0.00000 *
5115 //
5116 HMMER3/b [3.0 | March 2010]
5117 NAME 4_LSU_Marchantiophyta_4_LSU_start_seven_long
5118 LENG 45
5119 ALPH DNA
5120 RF no
5121 CS no
5122 MAP yes
5123 DATE Wed Jan 25 18:26:33 2012
5124 NSEQ 7
5125 EFFN 3.188965
5126 CKSUM 2453683499
5127 STATS LOCAL MSV -8.1588 0.71933
5128 STATS LOCAL VITERBI -7.6809 0.71933
5129 STATS LOCAL FORWARD -4.0969 0.71933
5130 HMM A C G T
5131 m->m m->i m->d i->m i->i d->m d->d
5132 COMPO 1.34227 1.26850 1.38186 1.57801
5133 1.38629 1.38629 1.38629 1.38629
5134 0.03782 3.98694 3.98694 1.46634 0.26236 0.00000 *
5135 1 3.04463 2.56713 3.09446 0.18593 1 - -
5136 1.38629 1.38629 1.38629 1.38629
5137 0.03782 3.98694 3.98694 1.46634 0.26236 1.09861 0.40547
5138 2 3.04463 2.56713 3.09446 0.18593 2 - -
5139 1.38629 1.38629 1.38629 1.38629
5140 0.03782 3.98694 3.98694 1.46634 0.26236 1.09861 0.40547
5141 3 3.38259 0.13640 3.43416 2.79207 3 - -
5142 1.38629 1.38629 1.38629 1.38629
5143 0.03782 3.98694 3.98694 1.46634 0.26236 1.09861 0.40547
5144 4 2.91674 3.54314 0.12216 3.44323 4 - -
5145 1.38629 1.38629 1.38629 1.38629
5146 0.03782 3.98694 3.98694 1.46634 0.26236 1.09861 0.40547
5147 5 2.91674 3.54314 0.12216 3.44323 5 - -
5148 1.38629 1.38629 1.38629 1.38629
5149 0.03782 3.98694 3.98694 1.46634 0.26236 1.09861 0.40547
5150 6 0.14782 3.33648 2.77339 3.23404 6 - -
5151 1.38629 1.38629 1.38629 1.38629
5152 0.03782 3.98694 3.98694 1.46634 0.26236 1.09861 0.40547
5153 7 3.38259 0.13640 3.43416 2.79207 7 - -
5154 1.38629 1.38629 1.38629 1.38629
5155 0.03782 3.98694 3.98694 1.46634 0.26236 1.09861 0.40547
5156 8 3.38259 0.13640 3.43416 2.79207 8 - -
5157 1.38629 1.38629 1.38629 1.38629
5158 0.03782 3.98694 3.98694 1.46634 0.26236 1.09861 0.40547
5159 9 3.04463 2.56713 3.09446 0.18593 9 - -
5160 1.38629 1.38629 1.38629 1.38629
5161 0.03782 3.98694 3.98694 1.46634 0.26236 1.09861 0.40547
5162 10 3.38259 0.13640 3.43416 2.79207 10 - -
5163 1.38629 1.38629 1.38629 1.38629
5164 0.03782 3.98694 3.98694 1.46634 0.26236 1.09861 0.40547
5165 11 0.14782 3.33648 2.77339 3.23404 11 - -
5166 1.38629 1.38629 1.38629 1.38629
5167 0.03782 3.98694 3.98694 1.46634 0.26236 1.09861 0.40547
5168 12 2.91674 3.54314 0.12216 3.44323 12 - -
5169 1.38629 1.38629 1.38629 1.38629
5170 0.03782 3.98694 3.98694 1.46634 0.26236 1.09861 0.40547
5171 13 0.14782 3.33648 2.77339 3.23404 13 - -
5172 1.38629 1.38629 1.38629 1.38629
5173 0.03782 3.98694 3.98694 1.46634 0.26236 1.09861 0.40547
5174 14 3.04463 2.56713 3.09446 0.18593 14 - -
5175 1.38629 1.38629 1.38629 1.38629
5176 0.03782 3.98694 3.98694 1.46634 0.26236 1.09861 0.40547
5177 15 3.38259 0.13640 3.43416 2.79207 15 - -
5178 1.38629 1.38629 1.38629 1.38629
5179 0.03782 3.98694 3.98694 1.46634 0.26236 1.09861 0.40547
5180 16 2.91674 3.54314 0.12216 3.44323 16 - -
5181 1.38629 1.38629 1.38629 1.38629
5182 0.03782 3.98694 3.98694 1.46634 0.26236 1.09861 0.40547
5183 17 2.91674 3.54314 0.12216 3.44323 17 - -
5184 1.38629 1.38629 1.38629 1.38629
5185 0.03782 3.98694 3.98694 1.46634 0.26236 1.09861 0.40547
5186 18 2.91674 3.54314 0.12216 3.44323 18 - -
5187 1.38629 1.38629 1.38629 1.38629
5188 0.03782 3.98694 3.98694 1.46634 0.26236 1.09861 0.40547
5189 19 3.38259 0.13640 3.43416 2.79207 19 - -
5190 1.38629 1.38629 1.38629 1.38629
5191 0.03782 3.98694 3.98694 1.46634 0.26236 1.09861 0.40547
5192 20 0.14782 3.33648 2.77339 3.23404 20 - -
5193 1.38629 1.38629 1.38629 1.38629
5194 0.03782 3.98694 3.98694 1.46634 0.26236 1.09861 0.40547
5195 21 0.14782 3.33648 2.77339 3.23404 21 - -
5196 1.38629 1.38629 1.38629 1.38629
5197 0.03782 3.98694 3.98694 1.46634 0.26236 1.09861 0.40547
5198 22 2.91674 3.54314 0.12216 3.44323 22 - -
5199 1.38629 1.38629 1.38629 1.38629
5200 0.03782 3.98694 3.98694 1.46634 0.26236 1.09861 0.40547
5201 23 0.14782 3.33648 2.77339 3.23404 23 - -
5202 1.38629 1.38629 1.38629 1.38629
5203 0.03782 3.98694 3.98694 1.46634 0.26236 1.09861 0.40547
5204 24 3.38259 0.13640 3.43416 2.79207 24 - -
5205 1.38629 1.38629 1.38629 1.38629
5206 0.03782 3.98694 3.98694 1.46634 0.26236 1.09861 0.40547
5207 25 3.38259 0.13640 3.43416 2.79207 25 - -
5208 1.38629 1.38629 1.38629 1.38629
5209 0.03782 3.98694 3.98694 1.46634 0.26236 1.09861 0.40547
5210 26 0.14782 3.33648 2.77339 3.23404 26 - -
5211 1.38629 1.38629 1.38629 1.38629
5212 0.03782 3.98694 3.98694 1.46634 0.26236 1.09861 0.40547
5213 27 3.38259 0.13640 3.43416 2.79207 27 - -
5214 1.38629 1.38629 1.38629 1.38629
5215 0.03782 3.98694 3.98694 1.46634 0.26236 1.09861 0.40547
5216 28 3.38259 0.13640 3.43416 2.79207 28 - -
5217 1.38629 1.38629 1.38629 1.38629
5218 0.03782 3.98694 3.98694 1.46634 0.26236 1.09861 0.40547
5219 29 3.38259 0.13640 3.43416 2.79207 29 - -
5220 1.38629 1.38629 1.38629 1.38629
5221 0.03782 3.98694 3.98694 1.46634 0.26236 1.09861 0.40547
5222 30 2.91674 3.54314 0.12216 3.44323 30 - -
5223 1.38629 1.38629 1.38629 1.38629
5224 0.03782 3.98694 3.98694 1.46634 0.26236 1.09861 0.40547
5225 31 3.38259 0.13640 3.43416 2.79207 31 - -
5226 1.38629 1.38629 1.38629 1.38629
5227 0.03782 3.98694 3.98694 1.46634 0.26236 1.09861 0.40547
5228 32 3.04463 2.56713 3.09446 0.18593 32 - -
5229 1.38629 1.38629 1.38629 1.38629
5230 0.03782 3.98694 3.98694 1.46634 0.26236 1.09861 0.40547
5231 33 2.91674 3.54314 0.12216 3.44323 33 - -
5232 1.38629 1.38629 1.38629 1.38629
5233 0.03782 3.98694 3.98694 1.46634 0.26236 1.09861 0.40547
5234 34 0.14782 3.33648 2.77339 3.23404 34 - -
5235 1.38629 1.38629 1.38629 1.38629
5236 0.03782 3.98694 3.98694 1.46634 0.26236 1.09861 0.40547
5237 35 2.91674 3.54314 0.12216 3.44323 35 - -
5238 1.38629 1.38629 1.38629 1.38629
5239 0.03782 3.98694 3.98694 1.46634 0.26236 1.09861 0.40547
5240 36 3.04463 2.56713 3.09446 0.18593 36 - -
5241 1.38629 1.38629 1.38629 1.38629
5242 0.03782 3.98694 3.98694 1.46634 0.26236 1.09861 0.40547
5243 37 3.04463 2.56713 3.09446 0.18593 37 - -
5244 1.38629 1.38629 1.38629 1.38629
5245 0.03782 3.98694 3.98694 1.46634 0.26236 1.09861 0.40547
5246 38 3.04463 2.56713 3.09446 0.18593 38 - -
5247 1.38629 1.38629 1.38629 1.38629
5248 0.03782 3.98694 3.98694 1.46634 0.26236 1.09861 0.40547
5249 39 0.14782 3.33648 2.77339 3.23404 39 - -
5250 1.38629 1.38629 1.38629 1.38629
5251 0.03782 3.98694 3.98694 1.46634 0.26236 1.09861 0.40547
5252 40 0.14782 3.33648 2.77339 3.23404 40 - -
5253 1.38629 1.38629 1.38629 1.38629
5254 0.03782 3.98694 3.98694 1.46634 0.26236 1.09861 0.40547
5255 41 2.91674 3.54314 0.12216 3.44323 41 - -
5256 1.38629 1.38629 1.38629 1.38629
5257 0.03782 3.98694 3.98694 1.46634 0.26236 1.09861 0.40547
5258 42 3.38259 0.13640 3.43416 2.79207 42 - -
5259 1.38629 1.38629 1.38629 1.38629
5260 0.03782 3.98694 3.98694 1.46634 0.26236 1.09861 0.40547
5261 43 0.14782 3.33648 2.77339 3.23404 43 - -
5262 1.38629 1.38629 1.38629 1.38629
5263 0.03782 3.98694 3.98694 1.46634 0.26236 1.09861 0.40547
5264 44 3.04463 2.56713 3.09446 0.18593 44 - -
5265 1.38629 1.38629 1.38629 1.38629
5266 0.03782 3.98694 3.98694 1.46634 0.26236 1.09861 0.40547
5267 45 0.14782 3.33648 2.77339 3.23404 45 - -
5268 1.38629 1.38629 1.38629 1.38629
5269 0.01909 3.96821 * 1.46634 0.26236 0.00000 *
5270 //
5271 HMMER3/b [3.0 | March 2010]
5272 NAME 4_LSU_Marchantiophyta_4_LSU_start_six_long
5273 LENG 45
5274 ALPH DNA
5275 RF no
5276 CS no
5277 MAP yes
5278 DATE Wed Jan 25 18:26:23 2012
5279 NSEQ 3
5280 EFFN 3.000000
5281 CKSUM 4290214155
5282 STATS LOCAL MSV -8.1730 0.72006
5283 STATS LOCAL VITERBI -7.7143 0.72006
5284 STATS LOCAL FORWARD -3.8565 0.72006
5285 HMM A C G T
5286 m->m m->i m->d i->m i->i d->m d->d
5287 COMPO 1.28332 1.21312 1.45038 1.65477
5288 1.38629 1.38629 1.38629 1.38629
5289 0.03922 3.95124 3.95124 1.46634 0.26236 0.00000 *
5290 1 3.30705 0.14631 3.36166 2.73626 1 - -
5291 1.38629 1.38629 1.38629 1.38629
5292 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
5293 2 2.97980 2.52563 3.03204 0.19727 2 - -
5294 1.38629 1.38629 1.38629 1.38629
5295 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
5296 3 3.30705 0.14631 3.36166 2.73626 3 - -
5297 1.38629 1.38629 1.38629 1.38629
5298 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
5299 4 2.86982 3.47591 0.13017 3.36931 4 - -
5300 1.38629 1.38629 1.38629 1.38629
5301 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
5302 5 2.86982 3.47591 0.13017 3.36931 5 - -
5303 1.38629 1.38629 1.38629 1.38629
5304 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
5305 6 0.15719 3.27118 2.73043 3.16274 6 - -
5306 1.38629 1.38629 1.38629 1.38629
5307 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
5308 7 3.30705 0.14631 3.36166 2.73626 7 - -
5309 1.38629 1.38629 1.38629 1.38629
5310 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
5311 8 3.30705 0.14631 3.36166 2.73626 8 - -
5312 1.38629 1.38629 1.38629 1.38629
5313 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
5314 9 2.97980 2.52563 3.03204 0.19727 9 - -
5315 1.38629 1.38629 1.38629 1.38629
5316 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
5317 10 3.30705 0.14631 3.36166 2.73626 10 - -
5318 1.38629 1.38629 1.38629 1.38629
5319 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
5320 11 0.15719 3.27118 2.73043 3.16274 11 - -
5321 1.38629 1.38629 1.38629 1.38629
5322 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
5323 12 2.86982 3.47591 0.13017 3.36931 12 - -
5324 1.38629 1.38629 1.38629 1.38629
5325 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
5326 13 0.15719 3.27118 2.73043 3.16274 13 - -
5327 1.38629 1.38629 1.38629 1.38629
5328 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
5329 14 2.97980 2.52563 3.03204 0.19727 14 - -
5330 1.38629 1.38629 1.38629 1.38629
5331 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
5332 15 3.30705 0.14631 3.36166 2.73626 15 - -
5333 1.38629 1.38629 1.38629 1.38629
5334 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
5335 16 2.86982 3.47591 0.13017 3.36931 16 - -
5336 1.38629 1.38629 1.38629 1.38629
5337 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
5338 17 2.86982 3.47591 0.13017 3.36931 17 - -
5339 1.38629 1.38629 1.38629 1.38629
5340 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
5341 18 0.15719 3.27118 2.73043 3.16274 18 - -
5342 1.38629 1.38629 1.38629 1.38629
5343 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
5344 19 3.30705 0.14631 3.36166 2.73626 19 - -
5345 1.38629 1.38629 1.38629 1.38629
5346 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
5347 20 0.15719 3.27118 2.73043 3.16274 20 - -
5348 1.38629 1.38629 1.38629 1.38629
5349 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
5350 21 0.15719 3.27118 2.73043 3.16274 21 - -
5351 1.38629 1.38629 1.38629 1.38629
5352 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
5353 22 2.86982 3.47591 0.13017 3.36931 22 - -
5354 1.38629 1.38629 1.38629 1.38629
5355 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
5356 23 0.15719 3.27118 2.73043 3.16274 23 - -
5357 1.38629 1.38629 1.38629 1.38629
5358 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
5359 24 3.30705 0.14631 3.36166 2.73626 24 - -
5360 1.38629 1.38629 1.38629 1.38629
5361 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
5362 25 3.30705 0.14631 3.36166 2.73626 25 - -
5363 1.38629 1.38629 1.38629 1.38629
5364 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
5365 26 0.15719 3.27118 2.73043 3.16274 26 - -
5366 1.38629 1.38629 1.38629 1.38629
5367 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
5368 27 3.30705 0.14631 3.36166 2.73626 27 - -
5369 1.38629 1.38629 1.38629 1.38629
5370 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
5371 28 3.30705 0.14631 3.36166 2.73626 28 - -
5372 1.38629 1.38629 1.38629 1.38629
5373 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
5374 29 3.30705 0.14631 3.36166 2.73626 29 - -
5375 1.38629 1.38629 1.38629 1.38629
5376 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
5377 30 2.86982 3.47591 0.13017 3.36931 30 - -
5378 1.38629 1.38629 1.38629 1.38629
5379 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
5380 31 3.30705 0.14631 3.36166 2.73626 31 - -
5381 1.38629 1.38629 1.38629 1.38629
5382 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
5383 32 2.97980 2.52563 3.03204 0.19727 32 - -
5384 1.38629 1.38629 1.38629 1.38629
5385 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
5386 33 2.86982 3.47591 0.13017 3.36931 33 - -
5387 1.38629 1.38629 1.38629 1.38629
5388 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
5389 34 0.15719 3.27118 2.73043 3.16274 34 - -
5390 1.38629 1.38629 1.38629 1.38629
5391 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
5392 35 2.86982 3.47591 0.13017 3.36931 35 - -
5393 1.38629 1.38629 1.38629 1.38629
5394 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
5395 36 2.97980 2.52563 3.03204 0.19727 36 - -
5396 1.38629 1.38629 1.38629 1.38629
5397 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
5398 37 2.97980 2.52563 3.03204 0.19727 37 - -
5399 1.38629 1.38629 1.38629 1.38629
5400 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
5401 38 2.97980 2.52563 3.03204 0.19727 38 - -
5402 1.38629 1.38629 1.38629 1.38629
5403 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
5404 39 0.15719 3.27118 2.73043 3.16274 39 - -
5405 1.38629 1.38629 1.38629 1.38629
5406 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
5407 40 0.15719 3.27118 2.73043 3.16274 40 - -
5408 1.38629 1.38629 1.38629 1.38629
5409 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
5410 41 2.86982 3.47591 0.13017 3.36931 41 - -
5411 1.38629 1.38629 1.38629 1.38629
5412 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
5413 42 3.30705 0.14631 3.36166 2.73626 42 - -
5414 1.38629 1.38629 1.38629 1.38629
5415 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
5416 43 0.15719 3.27118 2.73043 3.16274 43 - -
5417 1.38629 1.38629 1.38629 1.38629
5418 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
5419 44 2.97980 2.52563 3.03204 0.19727 44 - -
5420 1.38629 1.38629 1.38629 1.38629
5421 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
5422 45 0.15719 3.27118 2.73043 3.16274 45 - -
5423 1.38629 1.38629 1.38629 1.38629
5424 0.01980 3.93183 * 1.46634 0.26236 0.00000 *
5425 //
5426 HMMER3/b [3.0 | March 2010]
5427 NAME 4_LSU_Marchantiophyta_4_LSU_start_ten_long
5428 LENG 45
5429 ALPH DNA
5430 RF no
5431 CS no
5432 MAP yes
5433 DATE Wed Jan 25 18:27:01 2012
5434 NSEQ 2
5435 EFFN 2.000000
5436 CKSUM 817679163
5437 STATS LOCAL MSV -7.7131 0.72754
5438 STATS LOCAL VITERBI -8.3485 0.72754
5439 STATS LOCAL FORWARD -3.4669 0.72754
5440 HMM A C G T
5441 m->m m->i m->d i->m i->i d->m d->d
5442 COMPO 1.34554 1.29909 1.31832 1.61326
5443 1.38629 1.38629 1.38629 1.38629
5444 0.04879 3.73767 3.73767 1.46634 0.26236 0.00000 *
5445 1 2.57915 2.25909 2.64442 0.28946 1 - -
5446 1.38629 1.38629 1.38629 1.38629
5447 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
5448 2 2.81865 0.23582 2.88868 2.35662 2 - -
5449 1.38629 1.38629 1.38629 1.38629
5450 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
5451 3 2.57915 2.25909 2.64442 0.28946 3 - -
5452 1.38629 1.38629 1.38629 1.38629
5453 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
5454 4 2.53331 3.02441 0.20344 2.88069 4 - -
5455 1.38629 1.38629 1.38629 1.38629
5456 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
5457 5 2.53331 3.02441 0.20344 2.88069 5 - -
5458 1.38629 1.38629 1.38629 1.38629
5459 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
5460 6 0.23862 2.84929 2.43386 2.70756 6 - -
5461 1.38629 1.38629 1.38629 1.38629
5462 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
5463 7 2.81865 0.23582 2.88868 2.35662 7 - -
5464 1.38629 1.38629 1.38629 1.38629
5465 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
5466 8 2.81865 0.23582 2.88868 2.35662 8 - -
5467 1.38629 1.38629 1.38629 1.38629
5468 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
5469 9 2.57915 2.25909 2.64442 0.28946 9 - -
5470 1.38629 1.38629 1.38629 1.38629
5471 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
5472 10 2.81865 0.23582 2.88868 2.35662 10 - -
5473 1.38629 1.38629 1.38629 1.38629
5474 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
5475 11 2.53331 3.02441 0.20344 2.88069 11 - -
5476 1.38629 1.38629 1.38629 1.38629
5477 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
5478 12 2.53331 3.02441 0.20344 2.88069 12 - -
5479 1.38629 1.38629 1.38629 1.38629
5480 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
5481 13 0.23862 2.84929 2.43386 2.70756 13 - -
5482 1.38629 1.38629 1.38629 1.38629
5483 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
5484 14 2.57915 2.25909 2.64442 0.28946 14 - -
5485 1.38629 1.38629 1.38629 1.38629
5486 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
5487 15 2.81865 0.23582 2.88868 2.35662 15 - -
5488 1.38629 1.38629 1.38629 1.38629
5489 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
5490 16 0.23862 2.84929 2.43386 2.70756 16 - -
5491 1.38629 1.38629 1.38629 1.38629
5492 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
5493 17 2.53331 3.02441 0.20344 2.88069 17 - -
5494 1.38629 1.38629 1.38629 1.38629
5495 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
5496 18 2.53331 3.02441 0.20344 2.88069 18 - -
5497 1.38629 1.38629 1.38629 1.38629
5498 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
5499 19 2.81865 0.23582 2.88868 2.35662 19 - -
5500 1.38629 1.38629 1.38629 1.38629
5501 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
5502 20 0.23862 2.84929 2.43386 2.70756 20 - -
5503 1.38629 1.38629 1.38629 1.38629
5504 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
5505 21 0.23862 2.84929 2.43386 2.70756 21 - -
5506 1.38629 1.38629 1.38629 1.38629
5507 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
5508 22 2.53331 3.02441 0.20344 2.88069 22 - -
5509 1.38629 1.38629 1.38629 1.38629
5510 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
5511 23 2.53331 3.02441 0.20344 2.88069 23 - -
5512 1.38629 1.38629 1.38629 1.38629
5513 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
5514 24 2.81865 0.23582 2.88868 2.35662 24 - -
5515 1.38629 1.38629 1.38629 1.38629
5516 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
5517 25 2.81865 0.23582 2.88868 2.35662 25 - -
5518 1.38629 1.38629 1.38629 1.38629
5519 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
5520 26 0.23862 2.84929 2.43386 2.70756 26 - -
5521 1.38629 1.38629 1.38629 1.38629
5522 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
5523 27 2.81865 0.23582 2.88868 2.35662 27 - -
5524 1.38629 1.38629 1.38629 1.38629
5525 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
5526 28 2.53331 3.02441 0.20344 2.88069 28 - -
5527 1.38629 1.38629 1.38629 1.38629
5528 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
5529 29 2.81865 0.23582 2.88868 2.35662 29 - -
5530 1.38629 1.38629 1.38629 1.38629
5531 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
5532 30 2.53331 3.02441 0.20344 2.88069 30 - -
5533 1.38629 1.38629 1.38629 1.38629
5534 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
5535 31 2.81865 0.23582 2.88868 2.35662 31 - -
5536 1.38629 1.38629 1.38629 1.38629
5537 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
5538 32 2.81865 0.23582 2.88868 2.35662 32 - -
5539 1.38629 1.38629 1.38629 1.38629
5540 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
5541 33 2.53331 3.02441 0.20344 2.88069 33 - -
5542 1.38629 1.38629 1.38629 1.38629
5543 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
5544 34 0.23862 2.84929 2.43386 2.70756 34 - -
5545 1.38629 1.38629 1.38629 1.38629
5546 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
5547 35 0.23862 2.84929 2.43386 2.70756 35 - -
5548 1.38629 1.38629 1.38629 1.38629
5549 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
5550 36 2.57915 2.25909 2.64442 0.28946 36 - -
5551 1.38629 1.38629 1.38629 1.38629
5552 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
5553 37 2.57915 2.25909 2.64442 0.28946 37 - -
5554 1.38629 1.38629 1.38629 1.38629
5555 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
5556 38 2.57915 2.25909 2.64442 0.28946 38 - -
5557 1.38629 1.38629 1.38629 1.38629
5558 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
5559 39 0.23862 2.84929 2.43386 2.70756 39 - -
5560 1.38629 1.38629 1.38629 1.38629
5561 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
5562 40 0.23862 2.84929 2.43386 2.70756 40 - -
5563 1.38629 1.38629 1.38629 1.38629
5564 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
5565 41 2.53331 3.02441 0.20344 2.88069 41 - -
5566 1.38629 1.38629 1.38629 1.38629
5567 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
5568 42 2.81865 0.23582 2.88868 2.35662 42 - -
5569 1.38629 1.38629 1.38629 1.38629
5570 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
5571 43 0.23862 2.84929 2.43386 2.70756 43 - -
5572 1.38629 1.38629 1.38629 1.38629
5573 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
5574 44 2.57915 2.25909 2.64442 0.28946 44 - -
5575 1.38629 1.38629 1.38629 1.38629
5576 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
5577 45 0.23862 2.84929 2.43386 2.70756 45 - -
5578 1.38629 1.38629 1.38629 1.38629
5579 0.02469 3.71357 * 1.46634 0.26236 0.00000 *
5580 //
5581 HMMER3/b [3.0 | March 2010]
5582 NAME 4_LSU_Marchantiophyta_4_LSU_start_three_long
5583 LENG 45
5584 ALPH DNA
5585 RF no
5586 CS no
5587 MAP yes
5588 DATE Wed Jan 25 18:25:55 2012
5589 NSEQ 3
5590 EFFN 3.000000
5591 CKSUM 2635444069
5592 STATS LOCAL MSV -8.1670 0.72023
5593 STATS LOCAL VITERBI -7.6237 0.72023
5594 STATS LOCAL FORWARD -4.0458 0.72023
5595 HMM A C G T
5596 m->m m->i m->d i->m i->i d->m d->d
5597 COMPO 1.28119 1.32936 1.44798 1.50236
5598 1.38629 1.38629 1.38629 1.38629
5599 0.03922 3.95124 3.95124 1.46634 0.26236 0.00000 *
5600 1 2.97980 2.52563 3.03204 0.19727 1 - -
5601 1.38629 1.38629 1.38629 1.38629
5602 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
5603 2 2.97980 2.52563 3.03204 0.19727 2 - -
5604 1.38629 1.38629 1.38629 1.38629
5605 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
5606 3 3.30705 0.14631 3.36166 2.73626 3 - -
5607 1.38629 1.38629 1.38629 1.38629
5608 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
5609 4 2.86982 3.47591 0.13017 3.36931 4 - -
5610 1.38629 1.38629 1.38629 1.38629
5611 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
5612 5 2.86982 3.47591 0.13017 3.36931 5 - -
5613 1.38629 1.38629 1.38629 1.38629
5614 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
5615 6 0.15719 3.27118 2.73043 3.16274 6 - -
5616 1.38629 1.38629 1.38629 1.38629
5617 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
5618 7 3.30705 0.14631 3.36166 2.73626 7 - -
5619 1.38629 1.38629 1.38629 1.38629
5620 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
5621 8 3.30705 0.14631 3.36166 2.73626 8 - -
5622 1.38629 1.38629 1.38629 1.38629
5623 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
5624 9 2.97980 2.52563 3.03204 0.19727 9 - -
5625 1.38629 1.38629 1.38629 1.38629
5626 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
5627 10 3.30705 0.14631 3.36166 2.73626 10 - -
5628 1.38629 1.38629 1.38629 1.38629
5629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
5630 11 0.15719 3.27118 2.73043 3.16274 11 - -
5631 1.38629 1.38629 1.38629 1.38629
5632 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
5633 12 2.86982 3.47591 0.13017 3.36931 12 - -
5634 1.38629 1.38629 1.38629 1.38629
5635 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
5636 13 0.15719 3.27118 2.73043 3.16274 13 - -
5637 1.38629 1.38629 1.38629 1.38629
5638 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
5639 14 2.97980 2.52563 3.03204 0.19727 14 - -
5640 1.38629 1.38629 1.38629 1.38629
5641 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
5642 15 3.30705 0.14631 3.36166 2.73626 15 - -
5643 1.38629 1.38629 1.38629 1.38629
5644 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
5645 16 0.15719 3.27118 2.73043 3.16274 16 - -
5646 1.38629 1.38629 1.38629 1.38629
5647 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
5648 17 2.86982 3.47591 0.13017 3.36931 17 - -
5649 1.38629 1.38629 1.38629 1.38629
5650 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
5651 18 2.86982 3.47591 0.13017 3.36931 18 - -
5652 1.38629 1.38629 1.38629 1.38629
5653 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
5654 19 3.30705 0.14631 3.36166 2.73626 19 - -
5655 1.38629 1.38629 1.38629 1.38629
5656 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
5657 20 0.15719 3.27118 2.73043 3.16274 20 - -
5658 1.38629 1.38629 1.38629 1.38629
5659 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
5660 21 0.15719 3.27118 2.73043 3.16274 21 - -
5661 1.38629 1.38629 1.38629 1.38629
5662 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
5663 22 2.86982 3.47591 0.13017 3.36931 22 - -
5664 1.38629 1.38629 1.38629 1.38629
5665 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
5666 23 0.15719 3.27118 2.73043 3.16274 23 - -
5667 1.38629 1.38629 1.38629 1.38629
5668 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
5669 24 2.97980 2.52563 3.03204 0.19727 24 - -
5670 1.38629 1.38629 1.38629 1.38629
5671 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
5672 25 3.30705 0.14631 3.36166 2.73626 25 - -
5673 1.38629 1.38629 1.38629 1.38629
5674 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
5675 26 0.15719 3.27118 2.73043 3.16274 26 - -
5676 1.38629 1.38629 1.38629 1.38629
5677 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
5678 27 3.30705 0.14631 3.36166 2.73626 27 - -
5679 1.38629 1.38629 1.38629 1.38629
5680 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
5681 28 3.30705 0.14631 3.36166 2.73626 28 - -
5682 1.38629 1.38629 1.38629 1.38629
5683 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
5684 29 3.30705 0.14631 3.36166 2.73626 29 - -
5685 1.38629 1.38629 1.38629 1.38629
5686 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
5687 30 2.86982 3.47591 0.13017 3.36931 30 - -
5688 1.38629 1.38629 1.38629 1.38629
5689 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
5690 31 3.30705 0.14631 3.36166 2.73626 31 - -
5691 1.38629 1.38629 1.38629 1.38629
5692 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
5693 32 2.97980 2.52563 3.03204 0.19727 32 - -
5694 1.38629 1.38629 1.38629 1.38629
5695 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
5696 33 2.86982 3.47591 0.13017 3.36931 33 - -
5697 1.38629 1.38629 1.38629 1.38629
5698 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
5699 34 0.15719 3.27118 2.73043 3.16274 34 - -
5700 1.38629 1.38629 1.38629 1.38629
5701 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
5702 35 2.86982 3.47591 0.13017 3.36931 35 - -
5703 1.38629 1.38629 1.38629 1.38629
5704 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
5705 36 2.97980 2.52563 3.03204 0.19727 36 - -
5706 1.38629 1.38629 1.38629 1.38629
5707 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
5708 37 2.97980 2.52563 3.03204 0.19727 37 - -
5709 1.38629 1.38629 1.38629 1.38629
5710 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
5711 38 2.97980 2.52563 3.03204 0.19727 38 - -
5712 1.38629 1.38629 1.38629 1.38629
5713 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
5714 39 0.15719 3.27118 2.73043 3.16274 39 - -
5715 1.38629 1.38629 1.38629 1.38629
5716 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
5717 40 0.15719 3.27118 2.73043 3.16274 40 - -
5718 1.38629 1.38629 1.38629 1.38629
5719 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
5720 41 2.86982 3.47591 0.13017 3.36931 41 - -
5721 1.38629 1.38629 1.38629 1.38629
5722 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
5723 42 3.30705 0.14631 3.36166 2.73626 42 - -
5724 1.38629 1.38629 1.38629 1.38629
5725 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
5726 43 0.15719 3.27118 2.73043 3.16274 43 - -
5727 1.38629 1.38629 1.38629 1.38629
5728 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
5729 44 2.97980 2.52563 3.03204 0.19727 44 - -
5730 1.38629 1.38629 1.38629 1.38629
5731 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
5732 45 0.15719 3.27118 2.73043 3.16274 45 - -
5733 1.38629 1.38629 1.38629 1.38629
5734 0.01980 3.93183 * 1.46634 0.26236 0.00000 *
5735 //
5736 HMMER3/b [3.0 | March 2010]
5737 NAME 4_LSU_Marchantiophyta_4_LSU_start_two_long
5738 LENG 45
5739 ALPH DNA
5740 RF no
5741 CS no
5742 MAP yes
5743 DATE Wed Jan 25 18:25:46 2012
5744 NSEQ 21
5745 EFFN 3.309448
5746 CKSUM 3528604808
5747 STATS LOCAL MSV -8.1581 0.71931
5748 STATS LOCAL VITERBI -7.4789 0.71931
5749 STATS LOCAL FORWARD -4.1423 0.71931
5750 HMM A C G T
5751 m->m m->i m->d i->m i->i d->m d->d
5752 COMPO 1.27636 1.38744 1.46044 1.43087
5753 1.38629 1.38629 1.38629 1.38629
5754 0.03698 4.00905 4.00905 1.46634 0.26236 0.00000 *
5755 1 3.42822 0.13079 3.47788 2.82543 1 - -
5756 1.38629 1.38629 1.38629 1.38629
5757 0.03698 4.00905 4.00905 1.46634 0.26236 1.09861 0.40547
5758 2 3.08433 2.59242 3.13264 0.17937 2 - -
5759 1.38629 1.38629 1.38629 1.38629
5760 0.03698 4.00905 4.00905 1.46634 0.26236 1.09861 0.40547
5761 3 3.08433 2.59242 3.13264 0.17937 3 - -
5762 1.38629 1.38629 1.38629 1.38629
5763 0.03698 4.00905 4.00905 1.46634 0.26236 1.09861 0.40547
5764 4 2.59337 2.93933 0.25330 2.34244 4 - -
5765 1.38629 1.38629 1.38629 1.38629
5766 0.03698 4.00905 4.00905 1.46634 0.26236 1.09861 0.40547
5767 5 2.94456 3.58345 0.11763 3.48767 5 - -
5768 1.38629 1.38629 1.38629 1.38629
5769 0.03698 4.00905 4.00905 1.46634 0.26236 1.09861 0.40547
5770 6 0.14246 3.37602 2.79917 3.27728 6 - -
5771 1.38629 1.38629 1.38629 1.38629
5772 0.03698 4.00905 4.00905 1.46634 0.26236 1.09861 0.40547
5773 7 3.42822 0.13079 3.47788 2.82543 7 - -
5774 1.38629 1.38629 1.38629 1.38629
5775 0.03698 4.00905 4.00905 1.46634 0.26236 1.09861 0.40547
5776 8 3.42822 0.13079 3.47788 2.82543 8 - -
5777 1.38629 1.38629 1.38629 1.38629
5778 0.03698 4.00905 4.00905 1.46634 0.26236 1.09861 0.40547
5779 9 3.08433 2.59242 3.13264 0.17937 9 - -
5780 1.38629 1.38629 1.38629 1.38629
5781 0.03698 4.00905 4.00905 1.46634 0.26236 1.09861 0.40547
5782 10 3.42822 0.13079 3.47788 2.82543 10 - -
5783 1.38629 1.38629 1.38629 1.38629
5784 0.03698 4.00905 4.00905 1.46634 0.26236 1.09861 0.40547
5785 11 0.14246 3.37602 2.79917 3.27728 11 - -
5786 1.38629 1.38629 1.38629 1.38629
5787 0.03698 4.00905 4.00905 1.46634 0.26236 1.09861 0.40547
5788 12 2.94456 3.58345 0.11763 3.48767 12 - -
5789 1.38629 1.38629 1.38629 1.38629
5790 0.03698 4.00905 4.00905 1.46634 0.26236 1.09861 0.40547
5791 13 0.14246 3.37602 2.79917 3.27728 13 - -
5792 1.38629 1.38629 1.38629 1.38629
5793 0.03698 4.00905 4.00905 1.46634 0.26236 1.09861 0.40547
5794 14 3.08433 2.59242 3.13264 0.17937 14 - -
5795 1.38629 1.38629 1.38629 1.38629
5796 0.03698 4.00905 4.00905 1.46634 0.26236 1.09861 0.40547
5797 15 3.42822 0.13079 3.47788 2.82543 15 - -
5798 1.38629 1.38629 1.38629 1.38629
5799 0.03698 4.00905 4.00905 1.46634 0.26236 1.09861 0.40547
5800 16 0.14246 3.37602 2.79917 3.27728 16 - -
5801 1.38629 1.38629 1.38629 1.38629
5802 0.03698 4.00905 4.00905 1.46634 0.26236 1.09861 0.40547
5803 17 2.94456 3.58345 0.11763 3.48767 17 - -
5804 1.38629 1.38629 1.38629 1.38629
5805 0.03698 4.00905 4.00905 1.46634 0.26236 1.09861 0.40547
5806 18 2.94456 3.58345 0.11763 3.48767 18 - -
5807 1.38629 1.38629 1.38629 1.38629
5808 0.03698 4.00905 4.00905 1.46634 0.26236 1.09861 0.40547
5809 19 3.42822 0.13079 3.47788 2.82543 19 - -
5810 1.38629 1.38629 1.38629 1.38629
5811 0.03698 4.00905 4.00905 1.46634 0.26236 1.09861 0.40547
5812 20 0.14246 3.37602 2.79917 3.27728 20 - -
5813 1.38629 1.38629 1.38629 1.38629
5814 0.03698 4.00905 4.00905 1.46634 0.26236 1.09861 0.40547
5815 21 0.14246 3.37602 2.79917 3.27728 21 - -
5816 1.38629 1.38629 1.38629 1.38629
5817 0.03698 4.00905 4.00905 1.46634 0.26236 1.09861 0.40547
5818 22 2.94456 3.58345 0.11763 3.48767 22 - -
5819 1.38629 1.38629 1.38629 1.38629
5820 0.03698 4.00905 4.00905 1.46634 0.26236 1.09861 0.40547
5821 23 0.14246 3.37602 2.79917 3.27728 23 - -
5822 1.38629 1.38629 1.38629 1.38629
5823 0.03698 4.00905 4.00905 1.46634 0.26236 1.09861 0.40547
5824 24 3.08433 2.59242 3.13264 0.17937 24 - -
5825 1.38629 1.38629 1.38629 1.38629
5826 0.03698 4.00905 4.00905 1.46634 0.26236 1.09861 0.40547
5827 25 3.08433 2.59242 3.13264 0.17937 25 - -
5828 1.38629 1.38629 1.38629 1.38629
5829 0.03698 4.00905 4.00905 1.46634 0.26236 1.09861 0.40547
5830 26 0.14246 3.37602 2.79917 3.27728 26 - -
5831 1.38629 1.38629 1.38629 1.38629
5832 0.03698 4.00905 4.00905 1.46634 0.26236 1.09861 0.40547
5833 27 3.42822 0.13079 3.47788 2.82543 27 - -
5834 1.38629 1.38629 1.38629 1.38629
5835 0.03698 4.00905 4.00905 1.46634 0.26236 1.09861 0.40547
5836 28 3.42822 0.13079 3.47788 2.82543 28 - -
5837 1.38629 1.38629 1.38629 1.38629
5838 0.03698 4.00905 4.00905 1.46634 0.26236 1.09861 0.40547
5839 29 3.42822 0.13079 3.47788 2.82543 29 - -
5840 1.38629 1.38629 1.38629 1.38629
5841 0.03698 4.00905 4.00905 1.46634 0.26236 1.09861 0.40547
5842 30 2.94456 3.58345 0.11763 3.48767 30 - -
5843 1.38629 1.38629 1.38629 1.38629
5844 0.03698 4.00905 4.00905 1.46634 0.26236 1.09861 0.40547
5845 31 3.42822 0.13079 3.47788 2.82543 31 - -
5846 1.38629 1.38629 1.38629 1.38629
5847 0.03698 4.00905 4.00905 1.46634 0.26236 1.09861 0.40547
5848 32 3.08433 2.59242 3.13264 0.17937 32 - -
5849 1.38629 1.38629 1.38629 1.38629
5850 0.03698 4.00905 4.00905 1.46634 0.26236 1.09861 0.40547
5851 33 2.94456 3.58345 0.11763 3.48767 33 - -
5852 1.38629 1.38629 1.38629 1.38629
5853 0.03698 4.00905 4.00905 1.46634 0.26236 1.09861 0.40547
5854 34 0.14246 3.37602 2.79917 3.27728 34 - -
5855 1.38629 1.38629 1.38629 1.38629
5856 0.03698 4.00905 4.00905 1.46634 0.26236 1.09861 0.40547
5857 35 2.94456 3.58345 0.11763 3.48767 35 - -
5858 1.38629 1.38629 1.38629 1.38629
5859 0.03698 4.00905 4.00905 1.46634 0.26236 1.09861 0.40547
5860 36 3.08433 2.59242 3.13264 0.17937 36 - -
5861 1.38629 1.38629 1.38629 1.38629
5862 0.03698 4.00905 4.00905 1.46634 0.26236 1.09861 0.40547
5863 37 3.08433 2.59242 3.13264 0.17937 37 - -
5864 1.38629 1.38629 1.38629 1.38629
5865 0.03698 4.00905 4.00905 1.46634 0.26236 1.09861 0.40547
5866 38 3.08433 2.59242 3.13264 0.17937 38 - -
5867 1.38629 1.38629 1.38629 1.38629
5868 0.03698 4.00905 4.00905 1.46634 0.26236 1.09861 0.40547
5869 39 0.14246 3.37602 2.79917 3.27728 39 - -
5870 1.38629 1.38629 1.38629 1.38629
5871 0.03698 4.00905 4.00905 1.46634 0.26236 1.09861 0.40547
5872 40 0.14246 3.37602 2.79917 3.27728 40 - -
5873 1.38629 1.38629 1.38629 1.38629
5874 0.03698 4.00905 4.00905 1.46634 0.26236 1.09861 0.40547
5875 41 2.94456 3.58345 0.11763 3.48767 41 - -
5876 1.38629 1.38629 1.38629 1.38629
5877 0.03698 4.00905 4.00905 1.46634 0.26236 1.09861 0.40547
5878 42 3.42822 0.13079 3.47788 2.82543 42 - -
5879 1.38629 1.38629 1.38629 1.38629
5880 0.03698 4.00905 4.00905 1.46634 0.26236 1.09861 0.40547
5881 43 0.14246 3.37602 2.79917 3.27728 43 - -
5882 1.38629 1.38629 1.38629 1.38629
5883 0.03698 4.00905 4.00905 1.46634 0.26236 1.09861 0.40547
5884 44 3.08433 2.59242 3.13264 0.17937 44 - -
5885 1.38629 1.38629 1.38629 1.38629
5886 0.03698 4.00905 4.00905 1.46634 0.26236 1.09861 0.40547
5887 45 0.14246 3.37602 2.79917 3.27728 45 - -
5888 1.38629 1.38629 1.38629 1.38629
5889 0.01866 3.99073 * 1.46634 0.26236 0.00000 *
5890 //
5891 HMMER3/b [3.0 | March 2010]
5892 NAME 1_SSU_Marchantiophyta_1_SSU_end_long
5893 LENG 45
5894 ALPH DNA
5895 RF no
5896 CS no
5897 MAP yes
5898 DATE Tue Jan 24 11:12:54 2012
5899 NSEQ 199
5900 EFFN 3.227798
5901 CKSUM 1341977593
5902 STATS LOCAL MSV -7.9719 0.71931
5903 STATS LOCAL VITERBI -7.6787 0.71931
5904 STATS LOCAL FORWARD -4.0863 0.71931
5905 HMM A C G T
5906 m->m m->i m->d i->m i->i d->m d->d
5907 COMPO 1.33255 1.62894 1.18902 1.44588
5908 1.38629 1.38629 1.38629 1.38629
5909 0.03754 3.99412 3.99412 1.46634 0.26236 0.00000 *
5910 1 0.14604 3.34940 2.78183 3.24816 1 - -
5911 1.38629 1.38629 1.38629 1.38629
5912 0.03754 3.99412 3.99412 1.46634 0.26236 1.09861 0.40547
5913 2 2.92588 3.55634 0.12065 3.45778 2 - -
5914 1.38629 1.38629 1.38629 1.38629
5915 0.03754 3.99412 3.99412 1.46634 0.26236 1.09861 0.40547
5916 3 3.05756 2.57537 3.10690 0.18376 3 - -
5917 1.38629 1.38629 1.38629 1.38629
5918 0.03754 3.99412 3.99412 1.46634 0.26236 1.09861 0.40547
5919 4 3.39751 0.13454 3.44846 2.80301 4 - -
5920 1.38629 1.38629 1.38629 1.38629
5921 0.03754 3.99412 3.99412 1.46634 0.26236 1.09861 0.40547
5922 5 2.92588 3.55634 0.12065 3.45778 5 - -
5923 1.38629 1.38629 1.38629 1.38629
5924 0.03754 3.99412 3.99412 1.46634 0.26236 1.09861 0.40547
5925 6 3.05756 2.57537 3.10690 0.18376 6 - -
5926 1.38629 1.38629 1.38629 1.38629
5927 0.03754 3.99412 3.99412 1.46634 0.26236 1.09861 0.40547
5928 7 0.14604 3.34940 2.78183 3.24816 7 - -
5929 1.38629 1.38629 1.38629 1.38629
5930 0.03754 3.99412 3.99412 1.46634 0.26236 1.09861 0.40547
5931 8 0.14604 3.34940 2.78183 3.24816 8 - -
5932 1.38629 1.38629 1.38629 1.38629
5933 0.03754 3.99412 3.99412 1.46634 0.26236 1.09861 0.40547
5934 9 3.39751 0.13454 3.44846 2.80301 9 - -
5935 1.38629 1.38629 1.38629 1.38629
5936 0.03754 3.99412 3.99412 1.46634 0.26236 1.09861 0.40547
5937 10 0.14604 3.34940 2.78183 3.24816 10 - -
5938 1.38629 1.38629 1.38629 1.38629
5939 0.03754 3.99412 3.99412 1.46634 0.26236 1.09861 0.40547
5940 11 0.14604 3.34940 2.78183 3.24816 11 - -
5941 1.38629 1.38629 1.38629 1.38629
5942 0.03754 3.99412 3.99412 1.46634 0.26236 1.09861 0.40547
5943 12 2.92588 3.55634 0.12065 3.45778 12 - -
5944 1.38629 1.38629 1.38629 1.38629
5945 0.03754 3.99412 3.99412 1.46634 0.26236 1.09861 0.40547
5946 13 2.92588 3.55634 0.12065 3.45778 13 - -
5947 1.38629 1.38629 1.38629 1.38629
5948 0.03754 3.99412 3.99412 1.46634 0.26236 1.09861 0.40547
5949 14 3.05756 2.57537 3.10690 0.18376 14 - -
5950 1.38629 1.38629 1.38629 1.38629
5951 0.03754 3.99412 3.99412 1.46634 0.26236 1.09861 0.40547
5952 15 3.05756 2.57537 3.10690 0.18376 15 - -
5953 1.38629 1.38629 1.38629 1.38629
5954 0.03754 3.99412 3.99412 1.46634 0.26236 1.09861 0.40547
5955 16 3.05756 2.57537 3.10690 0.18376 16 - -
5956 1.38629 1.38629 1.38629 1.38629
5957 0.03754 3.99412 3.99412 1.46634 0.26236 1.09861 0.40547
5958 17 3.26849 0.15489 3.20294 2.73664 17 - -
5959 1.38629 1.38629 1.38629 1.38629
5960 0.03754 3.99412 3.99412 1.46634 0.26236 1.09861 0.40547
5961 18 3.39751 0.13454 3.44846 2.80301 18 - -
5962 1.38629 1.38629 1.38629 1.38629
5963 0.03754 3.99412 3.99412 1.46634 0.26236 1.09861 0.40547
5964 19 2.92588 3.55634 0.12065 3.45778 19 - -
5965 1.38629 1.38629 1.38629 1.38629
5966 0.03754 3.99412 3.99412 1.46634 0.26236 1.09861 0.40547
5967 20 3.05756 2.57537 3.10690 0.18376 20 - -
5968 1.38629 1.38629 1.38629 1.38629
5969 0.03754 3.99412 3.99412 1.46634 0.26236 1.09861 0.40547
5970 21 0.14604 3.34940 2.78183 3.24816 21 - -
5971 1.38629 1.38629 1.38629 1.38629
5972 0.04062 3.99412 3.84540 1.46634 0.26236 1.09861 0.40547
5973 22 2.92212 3.55092 0.12127 3.45180 22 - -
5974 1.38629 1.38629 1.38629 1.38629
5975 0.03766 3.99116 3.99116 1.46634 0.26236 1.00196 0.45754
5976 23 2.92588 3.55634 0.12065 3.45778 23 - -
5977 1.38629 1.38629 1.38629 1.38629
5978 0.03754 3.99412 3.99412 1.46634 0.26236 1.09861 0.40547
5979 24 3.05756 2.57537 3.10690 0.18376 24 - -
5980 1.38629 1.38629 1.38629 1.38629
5981 0.03754 3.99412 3.99412 1.46634 0.26236 1.09861 0.40547
5982 25 2.92588 3.55634 0.12065 3.45778 25 - -
5983 1.38629 1.38629 1.38629 1.38629
5984 0.03754 3.99412 3.99412 1.46634 0.26236 1.09861 0.40547
5985 26 0.14604 3.34940 2.78183 3.24816 26 - -
5986 1.38629 1.38629 1.38629 1.38629
5987 0.03754 3.99412 3.99412 1.46634 0.26236 1.09861 0.40547
5988 27 0.14604 3.34940 2.78183 3.24816 27 - -
5989 1.38629 1.38629 1.38629 1.38629
5990 0.03754 3.99412 3.99412 1.46634 0.26236 1.09861 0.40547
5991 28 3.39751 0.13454 3.44846 2.80301 28 - -
5992 1.38629 1.38629 1.38629 1.38629
5993 0.03754 3.99412 3.99412 1.46634 0.26236 1.09861 0.40547
5994 29 3.39751 0.13454 3.44846 2.80301 29 - -
5995 1.38629 1.38629 1.38629 1.38629
5996 0.03754 3.99412 3.99412 1.46634 0.26236 1.09861 0.40547
5997 30 3.05756 2.57537 3.10690 0.18376 30 - -
5998 1.38629 1.38629 1.38629 1.38629
5999 0.03754 3.99412 3.99412 1.46634 0.26236 1.09861 0.40547
6000 31 2.92588 3.55634 0.12065 3.45778 31 - -
6001 1.38629 1.38629 1.38629 1.38629
6002 0.03754 3.99412 3.99412 1.46634 0.26236 1.09861 0.40547
6003 32 3.39751 0.13454 3.44846 2.80301 32 - -
6004 1.38629 1.38629 1.38629 1.38629
6005 0.03754 3.99412 3.99412 1.46634 0.26236 1.09861 0.40547
6006 33 2.92588 3.55634 0.12065 3.45778 33 - -
6007 1.38629 1.38629 1.38629 1.38629
6008 0.03754 3.99412 3.99412 1.46634 0.26236 1.09861 0.40547
6009 34 2.92588 3.55634 0.12065 3.45778 34 - -
6010 1.38629 1.38629 1.38629 1.38629
6011 0.03754 3.99412 3.99412 1.46634 0.26236 1.09861 0.40547
6012 35 0.14604 3.34940 2.78183 3.24816 35 - -
6013 1.38629 1.38629 1.38629 1.38629
6014 0.03754 3.99412 3.99412 1.46634 0.26236 1.09861 0.40547
6015 36 0.14604 3.34940 2.78183 3.24816 36 - -
6016 1.38629 1.38629 1.38629 1.38629
6017 0.03754 3.99412 3.99412 1.46634 0.26236 1.09861 0.40547
6018 37 2.92588 3.55634 0.12065 3.45778 37 - -
6019 1.38629 1.38629 1.38629 1.38629
6020 0.03754 3.99412 3.99412 1.46634 0.26236 1.09861 0.40547
6021 38 2.92588 3.55634 0.12065 3.45778 38 - -
6022 1.38629 1.38629 1.38629 1.38629
6023 0.03754 3.99412 3.99412 1.46634 0.26236 1.09861 0.40547
6024 39 0.14604 3.34940 2.78183 3.24816 39 - -
6025 1.38629 1.38629 1.38629 1.38629
6026 0.03754 3.99412 3.99412 1.46634 0.26236 1.09861 0.40547
6027 40 3.05756 2.57537 3.10690 0.18376 40 - -
6028 1.38629 1.38629 1.38629 1.38629
6029 0.03754 3.99412 3.99412 1.46634 0.26236 1.09861 0.40547
6030 41 3.39751 0.13454 3.44846 2.80301 41 - -
6031 1.38629 1.38629 1.38629 1.38629
6032 0.03754 3.99412 3.99412 1.46634 0.26236 1.09861 0.40547
6033 42 0.14604 3.34940 2.78183 3.24816 42 - -
6034 1.38629 1.38629 1.38629 1.38629
6035 0.03754 3.99412 3.99412 1.46634 0.26236 1.09861 0.40547
6036 43 3.05756 2.57537 3.10690 0.18376 43 - -
6037 1.38629 1.38629 1.38629 1.38629
6038 0.03754 3.99412 3.99412 1.46634 0.26236 1.09861 0.40547
6039 44 3.05756 2.57537 3.10690 0.18376 44 - -
6040 1.38629 1.38629 1.38629 1.38629
6041 0.03754 3.99412 3.99412 1.46634 0.26236 1.09861 0.40547
6042 45 2.92588 3.55634 0.12065 3.45778 45 - -
6043 1.38629 1.38629 1.38629 1.38629
6044 0.01895 3.97552 * 1.46634 0.26236 0.00000 *
6045 //