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comparison ITSx_db/HMMs/R.hmm @ 0:57e76d405a97 draft default tip

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date Mon, 14 Mar 2016 16:15:08 -0400
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-1:000000000000 0:57e76d405a97
1 HMMER3/b [3.0 | March 2010]
2 NAME 3_End_Rhizaria_58S_end_eight_long
3 LENG 45
4 ALPH DNA
5 RF no
6 CS no
7 MAP yes
8 DATE Fri Jan 20 15:33:02 2012
9 NSEQ 2
10 EFFN 2.000000
11 CKSUM 1899220078
12 STATS LOCAL MSV -7.5314 0.72773
13 STATS LOCAL VITERBI -8.2053 0.72773
14 STATS LOCAL FORWARD -3.4398 0.72773
15 HMM A C G T
16 m->m m->i m->d i->m i->i d->m d->d
17 COMPO 1.39561 1.53003 1.21055 1.43652
18 1.38629 1.38629 1.38629 1.38629
19 0.04879 3.73767 3.73767 1.46634 0.26236 0.00000 *
20 1 2.57915 2.25909 2.64442 0.28946 1 - -
21 1.38629 1.38629 1.38629 1.38629
22 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
23 2 2.81865 0.23582 2.88868 2.35662 2 - -
24 1.38629 1.38629 1.38629 1.38629
25 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
26 3 2.57915 2.25909 2.64442 0.28946 3 - -
27 1.38629 1.38629 1.38629 1.38629
28 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
29 4 0.23862 2.84929 2.43386 2.70756 4 - -
30 1.38629 1.38629 1.38629 1.38629
31 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
32 5 2.57915 2.25909 2.64442 0.28946 5 - -
33 1.38629 1.38629 1.38629 1.38629
34 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
35 6 2.57915 2.25909 2.64442 0.28946 6 - -
36 1.38629 1.38629 1.38629 1.38629
37 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
38 7 2.81865 0.23582 2.88868 2.35662 7 - -
39 1.38629 1.38629 1.38629 1.38629
40 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
41 8 2.57915 2.25909 2.64442 0.28946 8 - -
42 1.38629 1.38629 1.38629 1.38629
43 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
44 9 2.81865 0.23582 2.88868 2.35662 9 - -
45 1.38629 1.38629 1.38629 1.38629
46 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
47 10 2.81865 0.23582 2.88868 2.35662 10 - -
48 1.38629 1.38629 1.38629 1.38629
49 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
50 11 0.23862 2.84929 2.43386 2.70756 11 - -
51 1.38629 1.38629 1.38629 1.38629
52 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
53 12 0.23862 2.84929 2.43386 2.70756 12 - -
54 1.38629 1.38629 1.38629 1.38629
55 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
56 13 2.81865 0.23582 2.88868 2.35662 13 - -
57 1.38629 1.38629 1.38629 1.38629
58 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
59 14 0.23862 2.84929 2.43386 2.70756 14 - -
60 1.38629 1.38629 1.38629 1.38629
61 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
62 15 2.53331 3.02441 0.20344 2.88069 15 - -
63 1.38629 1.38629 1.38629 1.38629
64 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
65 16 2.53331 3.02441 0.20344 2.88069 16 - -
66 1.38629 1.38629 1.38629 1.38629
67 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
68 17 0.23862 2.84929 2.43386 2.70756 17 - -
69 1.38629 1.38629 1.38629 1.38629
70 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
71 18 0.23862 2.84929 2.43386 2.70756 18 - -
72 1.38629 1.38629 1.38629 1.38629
73 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
74 19 2.57915 2.25909 2.64442 0.28946 19 - -
75 1.38629 1.38629 1.38629 1.38629
76 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
77 20 0.23862 2.84929 2.43386 2.70756 20 - -
78 1.38629 1.38629 1.38629 1.38629
79 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
80 21 2.53331 3.02441 0.20344 2.88069 21 - -
81 1.38629 1.38629 1.38629 1.38629
82 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
83 22 0.23862 2.84929 2.43386 2.70756 22 - -
84 1.38629 1.38629 1.38629 1.38629
85 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
86 23 2.53331 3.02441 0.20344 2.88069 23 - -
87 1.38629 1.38629 1.38629 1.38629
88 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
89 24 2.81865 0.23582 2.88868 2.35662 24 - -
90 1.38629 1.38629 1.38629 1.38629
91 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
92 25 0.23862 2.84929 2.43386 2.70756 25 - -
93 1.38629 1.38629 1.38629 1.38629
94 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
95 26 2.57915 2.25909 2.64442 0.28946 26 - -
96 1.38629 1.38629 1.38629 1.38629
97 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
98 27 2.53331 3.02441 0.20344 2.88069 27 - -
99 1.38629 1.38629 1.38629 1.38629
100 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
101 28 2.53331 3.02441 0.20344 2.88069 28 - -
102 1.38629 1.38629 1.38629 1.38629
103 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
104 29 2.57915 2.25909 2.64442 0.28946 29 - -
105 1.38629 1.38629 1.38629 1.38629
106 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
107 30 2.53331 3.02441 0.20344 2.88069 30 - -
108 1.38629 1.38629 1.38629 1.38629
109 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
110 31 2.53331 3.02441 0.20344 2.88069 31 - -
111 1.38629 1.38629 1.38629 1.38629
112 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
113 32 2.57915 2.25909 2.64442 0.28946 32 - -
114 1.38629 1.38629 1.38629 1.38629
115 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
116 33 2.81865 0.23582 2.88868 2.35662 33 - -
117 1.38629 1.38629 1.38629 1.38629
118 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
119 34 2.53331 3.02441 0.20344 2.88069 34 - -
120 1.38629 1.38629 1.38629 1.38629
121 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
122 35 2.53331 3.02441 0.20344 2.88069 35 - -
123 1.38629 1.38629 1.38629 1.38629
124 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
125 36 0.23862 2.84929 2.43386 2.70756 36 - -
126 1.38629 1.38629 1.38629 1.38629
127 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
128 37 2.53331 3.02441 0.20344 2.88069 37 - -
129 1.38629 1.38629 1.38629 1.38629
130 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
131 38 2.57915 2.25909 2.64442 0.28946 38 - -
132 1.38629 1.38629 1.38629 1.38629
133 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
134 39 2.53331 3.02441 0.20344 2.88069 39 - -
135 1.38629 1.38629 1.38629 1.38629
136 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
137 40 0.23862 2.84929 2.43386 2.70756 40 - -
138 1.38629 1.38629 1.38629 1.38629
139 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
140 41 2.81865 0.23582 2.88868 2.35662 41 - -
141 1.38629 1.38629 1.38629 1.38629
142 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
143 42 2.81865 0.23582 2.88868 2.35662 42 - -
144 1.38629 1.38629 1.38629 1.38629
145 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
146 43 2.53331 3.02441 0.20344 2.88069 43 - -
147 1.38629 1.38629 1.38629 1.38629
148 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
149 44 2.53331 3.02441 0.20344 2.88069 44 - -
150 1.38629 1.38629 1.38629 1.38629
151 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
152 45 2.57915 2.25909 2.64442 0.28946 45 - -
153 1.38629 1.38629 1.38629 1.38629
154 0.02469 3.71357 * 1.46634 0.26236 0.00000 *
155 //
156 HMMER3/b [3.0 | March 2010]
157 NAME 3_End_Rhizaria_58S_end_five_long
158 LENG 45
159 ALPH DNA
160 RF no
161 CS no
162 MAP yes
163 DATE Fri Jan 20 15:32:14 2012
164 NSEQ 44
165 EFFN 3.789307
166 CKSUM 2492145104
167 STATS LOCAL MSV -6.9952 0.71932
168 STATS LOCAL VITERBI -7.7147 0.71932
169 STATS LOCAL FORWARD -4.1076 0.71932
170 HMM A C G T
171 m->m m->i m->d i->m i->i d->m d->d
172 COMPO 1.52743 1.25061 1.45063 1.33883
173 1.38629 1.38629 1.38629 1.38629
174 0.03396 4.09256 4.09256 1.46634 0.26236 0.00000 *
175 1 0.12490 3.51867 2.89120 3.43374 1 - -
176 1.38629 1.38629 1.38629 1.38629
177 0.03396 4.09256 4.09256 1.46634 0.26236 1.09861 0.40547
178 2 3.23058 2.68521 3.27322 0.15739 2 - -
179 1.38629 1.38629 1.38629 1.38629
180 0.03396 4.09256 4.09256 1.46634 0.26236 1.09861 0.40547
181 3 3.04180 3.72624 0.10307 3.64571 3 - -
182 1.38629 1.38629 1.38629 1.38629
183 0.03396 4.09256 4.09256 1.46634 0.26236 1.09861 0.40547
184 4 3.59175 0.11278 3.63422 2.94315 4 - -
185 1.38629 1.38629 1.38629 1.38629
186 0.03396 4.09256 4.09256 1.46634 0.26236 1.09861 0.40547
187 5 0.12490 3.51867 2.89120 3.43374 5 - -
188 1.38629 1.38629 1.38629 1.38629
189 0.03396 4.09256 4.09256 1.46634 0.26236 1.09861 0.40547
190 6 0.14815 3.42758 2.66373 3.33692 6 - -
191 1.38629 1.38629 1.38629 1.38629
192 0.03396 4.09256 4.09256 1.46634 0.26236 1.09861 0.40547
193 7 0.12490 3.51867 2.89120 3.43374 7 - -
194 1.38629 1.38629 1.38629 1.38629
195 0.03396 4.09256 4.09256 1.46634 0.26236 1.09861 0.40547
196 8 3.23058 2.68521 3.27322 0.15739 8 - -
197 1.38629 1.38629 1.38629 1.38629
198 0.03396 4.09256 4.09256 1.46634 0.26236 1.09861 0.40547
199 9 2.82736 1.80315 2.88647 0.32812 9 - -
200 1.38629 1.38629 1.38629 1.38629
201 0.03396 4.09256 4.09256 1.46634 0.26236 1.09861 0.40547
202 10 3.04180 3.72624 0.10307 3.64571 10 - -
203 1.38629 1.38629 1.38629 1.38629
204 0.03396 4.09256 4.09256 1.46634 0.26236 1.09861 0.40547
205 11 3.59175 0.11278 3.63422 2.94315 11 - -
206 1.38629 1.38629 1.38629 1.38629
207 0.03396 4.09256 4.09256 1.46634 0.26236 1.09861 0.40547
208 12 3.04180 3.72624 0.10307 3.64571 12 - -
209 1.38629 1.38629 1.38629 1.38629
210 0.03396 4.09256 4.09256 1.46634 0.26236 1.09861 0.40547
211 13 3.59175 0.11278 3.63422 2.94315 13 - -
212 1.38629 1.38629 1.38629 1.38629
213 0.03396 4.09256 4.09256 1.46634 0.26236 1.09861 0.40547
214 14 3.59175 0.11278 3.63422 2.94315 14 - -
215 1.38629 1.38629 1.38629 1.38629
216 0.03396 4.09256 4.09256 1.46634 0.26236 1.09861 0.40547
217 15 3.04180 3.72624 0.10307 3.64571 15 - -
218 1.38629 1.38629 1.38629 1.38629
219 0.03396 4.09256 4.09256 1.46634 0.26236 1.09861 0.40547
220 16 3.59175 0.11278 3.63422 2.94315 16 - -
221 1.38629 1.38629 1.38629 1.38629
222 0.03396 4.09256 4.09256 1.46634 0.26236 1.09861 0.40547
223 17 2.50841 1.08668 2.57840 0.68246 17 - -
224 1.38629 1.38629 1.38629 1.38629
225 0.03396 4.09256 4.09256 1.46634 0.26236 1.09861 0.40547
226 18 0.12490 3.51867 2.89120 3.43374 18 - -
227 1.38629 1.38629 1.38629 1.38629
228 0.03396 4.09256 4.09256 1.46634 0.26236 1.09861 0.40547
229 19 3.04180 3.72624 0.10307 3.64571 19 - -
230 1.38629 1.38629 1.38629 1.38629
231 0.03396 4.09256 4.09256 1.46634 0.26236 1.09861 0.40547
232 20 1.90623 0.38196 2.63636 2.33078 20 - -
233 1.38629 1.38629 1.38629 1.38629
234 0.03396 4.09256 4.09256 1.46634 0.26236 1.09861 0.40547
235 21 3.59175 0.11278 3.63422 2.94315 21 - -
236 1.38629 1.38629 1.38629 1.38629
237 0.03396 4.09256 4.09256 1.46634 0.26236 1.09861 0.40547
238 22 2.80206 3.62415 0.12382 3.53678 22 - -
239 1.38629 1.38629 1.38629 1.38629
240 0.03396 4.09256 4.09256 1.46634 0.26236 1.09861 0.40547
241 23 2.80142 3.62384 0.12389 3.53646 23 - -
242 1.38629 1.38629 1.38629 1.38629
243 0.03396 4.09256 4.09256 1.46634 0.26236 1.09861 0.40547
244 24 3.59175 0.11278 3.63422 2.94315 24 - -
245 1.38629 1.38629 1.38629 1.38629
246 0.03396 4.09256 4.09256 1.46634 0.26236 1.09861 0.40547
247 25 0.12490 3.51867 2.89120 3.43374 25 - -
248 1.38629 1.38629 1.38629 1.38629
249 0.03396 4.09256 4.09256 1.46634 0.26236 1.09861 0.40547
250 26 3.23058 2.68521 3.27322 0.15739 26 - -
251 1.38629 1.38629 1.38629 1.38629
252 0.03396 4.09256 4.09256 1.46634 0.26236 1.09861 0.40547
253 27 3.04180 3.72624 0.10307 3.64571 27 - -
254 1.38629 1.38629 1.38629 1.38629
255 0.03396 4.09256 4.09256 1.46634 0.26236 1.09861 0.40547
256 28 3.59175 0.11278 3.63422 2.94315 28 - -
257 1.38629 1.38629 1.38629 1.38629
258 0.03396 4.09256 4.09256 1.46634 0.26236 1.09861 0.40547
259 29 3.23058 2.68521 3.27322 0.15739 29 - -
260 1.38629 1.38629 1.38629 1.38629
261 0.03396 4.09256 4.09256 1.46634 0.26236 1.09861 0.40547
262 30 3.23058 2.68521 3.27322 0.15739 30 - -
263 1.38629 1.38629 1.38629 1.38629
264 0.03396 4.09256 4.09256 1.46634 0.26236 1.09861 0.40547
265 31 3.59175 0.11278 3.63422 2.94315 31 - -
266 1.38629 1.38629 1.38629 1.38629
267 0.03396 4.09256 4.09256 1.46634 0.26236 1.09861 0.40547
268 32 3.59175 0.11278 3.63422 2.94315 32 - -
269 1.38629 1.38629 1.38629 1.38629
270 0.03396 4.09256 4.09256 1.46634 0.26236 1.09861 0.40547
271 33 3.23058 2.68521 3.27322 0.15739 33 - -
272 1.38629 1.38629 1.38629 1.38629
273 0.03396 4.09256 4.09256 1.46634 0.26236 1.09861 0.40547
274 34 3.23058 2.68521 3.27322 0.15739 34 - -
275 1.38629 1.38629 1.38629 1.38629
276 0.03396 4.09256 4.09256 1.46634 0.26236 1.09861 0.40547
277 35 3.04180 3.72624 0.10307 3.64571 35 - -
278 1.38629 1.38629 1.38629 1.38629
279 0.03396 4.09256 4.09256 1.46634 0.26236 1.09861 0.40547
280 36 0.12490 3.51867 2.89120 3.43374 36 - -
281 1.38629 1.38629 1.38629 1.38629
282 0.03396 4.09256 4.09256 1.46634 0.26236 1.09861 0.40547
283 37 3.04180 3.72624 0.10307 3.64571 37 - -
284 1.38629 1.38629 1.38629 1.38629
285 0.03396 4.09256 4.09256 1.46634 0.26236 1.09861 0.40547
286 38 0.12490 3.51867 2.89120 3.43374 38 - -
287 1.38629 1.38629 1.38629 1.38629
288 0.03396 4.09256 4.09256 1.46634 0.26236 1.09861 0.40547
289 39 0.12490 3.51867 2.89120 3.43374 39 - -
290 1.38629 1.38629 1.38629 1.38629
291 0.03396 4.09256 4.09256 1.46634 0.26236 1.09861 0.40547
292 40 3.46796 0.13776 3.51501 2.69173 40 - -
293 1.38629 1.38629 1.38629 1.38629
294 0.03396 4.09256 4.09256 1.46634 0.26236 1.09861 0.40547
295 41 2.93556 0.30373 2.99948 1.83868 41 - -
296 1.38629 1.38629 1.38629 1.38629
297 0.03396 4.09256 4.09256 1.46634 0.26236 1.09861 0.40547
298 42 3.23058 2.68521 3.27322 0.15739 42 - -
299 1.38629 1.38629 1.38629 1.38629
300 0.03396 4.09256 4.09256 1.46634 0.26236 1.09861 0.40547
301 43 3.23058 2.68521 3.27322 0.15739 43 - -
302 1.38629 1.38629 1.38629 1.38629
303 0.03396 4.09256 4.09256 1.46634 0.26236 1.09861 0.40547
304 44 1.78643 2.34733 2.54280 0.41829 44 - -
305 1.38629 1.38629 1.38629 1.38629
306 0.03396 4.09256 4.09256 1.46634 0.26236 1.09861 0.40547
307 45 3.23058 2.68521 3.27322 0.15739 45 - -
308 1.38629 1.38629 1.38629 1.38629
309 0.01713 4.07572 * 1.46634 0.26236 0.00000 *
310 //
311 HMMER3/b [3.0 | March 2010]
312 NAME 3_End_Rhizaria_58S_end_four_long
313 LENG 45
314 ALPH DNA
315 RF no
316 CS no
317 MAP yes
318 DATE Fri Jan 20 15:32:04 2012
319 NSEQ 2
320 EFFN 2.000000
321 CKSUM 2834967617
322 STATS LOCAL MSV -7.4096 0.72847
323 STATS LOCAL VITERBI -8.2704 0.72847
324 STATS LOCAL FORWARD -3.1984 0.72847
325 HMM A C G T
326 m->m m->i m->d i->m i->i d->m d->d
327 COMPO 1.73203 1.50350 1.26657 1.14279
328 1.38629 1.38629 1.38629 1.38629
329 0.04879 3.73767 3.73767 1.46634 0.26236 0.00000 *
330 1 0.23862 2.84929 2.43386 2.70756 1 - -
331 1.38629 1.38629 1.38629 1.38629
332 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
333 2 2.81865 0.23582 2.88868 2.35662 2 - -
334 1.38629 1.38629 1.38629 1.38629
335 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
336 3 2.53331 3.02441 0.20344 2.88069 3 - -
337 1.38629 1.38629 1.38629 1.38629
338 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
339 4 2.81865 0.23582 2.88868 2.35662 4 - -
340 1.38629 1.38629 1.38629 1.38629
341 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
342 5 0.23862 2.84929 2.43386 2.70756 5 - -
343 1.38629 1.38629 1.38629 1.38629
344 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
345 6 0.23862 2.84929 2.43386 2.70756 6 - -
346 1.38629 1.38629 1.38629 1.38629
347 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
348 7 2.53331 3.02441 0.20344 2.88069 7 - -
349 1.38629 1.38629 1.38629 1.38629
350 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
351 8 2.57915 2.25909 2.64442 0.28946 8 - -
352 1.38629 1.38629 1.38629 1.38629
353 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
354 9 2.57915 2.25909 2.64442 0.28946 9 - -
355 1.38629 1.38629 1.38629 1.38629
356 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
357 10 2.53331 3.02441 0.20344 2.88069 10 - -
358 1.38629 1.38629 1.38629 1.38629
359 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
360 11 2.81865 0.23582 2.88868 2.35662 11 - -
361 1.38629 1.38629 1.38629 1.38629
362 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
363 12 2.53331 3.02441 0.20344 2.88069 12 - -
364 1.38629 1.38629 1.38629 1.38629
365 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
366 13 2.81865 0.23582 2.88868 2.35662 13 - -
367 1.38629 1.38629 1.38629 1.38629
368 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
369 14 2.81865 0.23582 2.88868 2.35662 14 - -
370 1.38629 1.38629 1.38629 1.38629
371 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
372 15 2.57915 2.25909 2.64442 0.28946 15 - -
373 1.38629 1.38629 1.38629 1.38629
374 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
375 16 2.81865 0.23582 2.88868 2.35662 16 - -
376 1.38629 1.38629 1.38629 1.38629
377 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
378 17 2.57915 2.25909 2.64442 0.28946 17 - -
379 1.38629 1.38629 1.38629 1.38629
380 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
381 18 2.57915 2.25909 2.64442 0.28946 18 - -
382 1.38629 1.38629 1.38629 1.38629
383 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
384 19 2.57915 2.25909 2.64442 0.28946 19 - -
385 1.38629 1.38629 1.38629 1.38629
386 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
387 20 2.53331 3.02441 0.20344 2.88069 20 - -
388 1.38629 1.38629 1.38629 1.38629
389 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
390 21 0.23862 2.84929 2.43386 2.70756 21 - -
391 1.38629 1.38629 1.38629 1.38629
392 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
393 22 2.53331 3.02441 0.20344 2.88069 22 - -
394 1.38629 1.38629 1.38629 1.38629
395 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
396 23 2.53331 3.02441 0.20344 2.88069 23 - -
397 1.38629 1.38629 1.38629 1.38629
398 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
399 24 2.81865 0.23582 2.88868 2.35662 24 - -
400 1.38629 1.38629 1.38629 1.38629
401 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
402 25 0.23862 2.84929 2.43386 2.70756 25 - -
403 1.38629 1.38629 1.38629 1.38629
404 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
405 26 2.57915 2.25909 2.64442 0.28946 26 - -
406 1.38629 1.38629 1.38629 1.38629
407 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
408 27 2.53331 3.02441 0.20344 2.88069 27 - -
409 1.38629 1.38629 1.38629 1.38629
410 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
411 28 2.81865 0.23582 2.88868 2.35662 28 - -
412 1.38629 1.38629 1.38629 1.38629
413 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
414 29 2.57915 2.25909 2.64442 0.28946 29 - -
415 1.38629 1.38629 1.38629 1.38629
416 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
417 30 2.57915 2.25909 2.64442 0.28946 30 - -
418 1.38629 1.38629 1.38629 1.38629
419 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
420 31 2.53331 3.02441 0.20344 2.88069 31 - -
421 1.38629 1.38629 1.38629 1.38629
422 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
423 32 2.57915 2.25909 2.64442 0.28946 32 - -
424 1.38629 1.38629 1.38629 1.38629
425 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
426 33 2.57915 2.25909 2.64442 0.28946 33 - -
427 1.38629 1.38629 1.38629 1.38629
428 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
429 34 2.57915 2.25909 2.64442 0.28946 34 - -
430 1.38629 1.38629 1.38629 1.38629
431 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
432 35 2.53331 3.02441 0.20344 2.88069 35 - -
433 1.38629 1.38629 1.38629 1.38629
434 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
435 36 0.23862 2.84929 2.43386 2.70756 36 - -
436 1.38629 1.38629 1.38629 1.38629
437 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
438 37 2.53331 3.02441 0.20344 2.88069 37 - -
439 1.38629 1.38629 1.38629 1.38629
440 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
441 38 2.57915 2.25909 2.64442 0.28946 38 - -
442 1.38629 1.38629 1.38629 1.38629
443 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
444 39 2.53331 3.02441 0.20344 2.88069 39 - -
445 1.38629 1.38629 1.38629 1.38629
446 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
447 40 2.57915 2.25909 2.64442 0.28946 40 - -
448 1.38629 1.38629 1.38629 1.38629
449 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
450 41 2.81865 0.23582 2.88868 2.35662 41 - -
451 1.38629 1.38629 1.38629 1.38629
452 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
453 42 2.53331 3.02441 0.20344 2.88069 42 - -
454 1.38629 1.38629 1.38629 1.38629
455 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
456 43 2.57915 2.25909 2.64442 0.28946 43 - -
457 1.38629 1.38629 1.38629 1.38629
458 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
459 44 2.57915 2.25909 2.64442 0.28946 44 - -
460 1.38629 1.38629 1.38629 1.38629
461 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
462 45 2.57915 2.25909 2.64442 0.28946 45 - -
463 1.38629 1.38629 1.38629 1.38629
464 0.02469 3.71357 * 1.46634 0.26236 0.00000 *
465 //
466 HMMER3/b [3.0 | March 2010]
467 NAME 3_End_Rhizaria_58S_end_one_long
468 LENG 45
469 ALPH DNA
470 RF no
471 CS no
472 MAP yes
473 DATE Fri Jan 20 15:31:41 2012
474 NSEQ 11
475 EFFN 3.300537
476 CKSUM 3132885964
477 STATS LOCAL MSV -8.1322 0.71932
478 STATS LOCAL VITERBI -7.7747 0.71932
479 STATS LOCAL FORWARD -3.9845 0.71932
480 HMM A C G T
481 m->m m->i m->d i->m i->i d->m d->d
482 COMPO 2.06390 1.19196 1.27025 1.24252
483 1.38629 1.38629 1.38629 1.38629
484 0.03704 4.00743 4.00743 1.46634 0.26236 0.00000 *
485 1 2.94256 3.58053 0.11795 3.48445 1 - -
486 1.38629 1.38629 1.38629 1.38629
487 0.03704 4.00743 4.00743 1.46634 0.26236 1.09861 0.40547
488 2 3.42491 0.13119 3.47471 2.82302 2 - -
489 1.38629 1.38629 1.38629 1.38629
490 0.03704 4.00743 4.00743 1.46634 0.26236 1.09861 0.40547
491 3 3.08143 2.59057 3.12986 0.17984 3 - -
492 1.38629 1.38629 1.38629 1.38629
493 0.03704 4.00743 4.00743 1.46634 0.26236 1.09861 0.40547
494 4 3.42491 0.13119 3.47471 2.82302 4 - -
495 1.38629 1.38629 1.38629 1.38629
496 0.03704 4.00743 4.00743 1.46634 0.26236 1.09861 0.40547
497 5 3.42491 0.13119 3.47471 2.82302 5 - -
498 1.38629 1.38629 1.38629 1.38629
499 0.03704 4.00743 4.00743 1.46634 0.26236 1.09861 0.40547
500 6 2.94256 3.58053 0.11795 3.48445 6 - -
501 1.38629 1.38629 1.38629 1.38629
502 0.03704 4.00743 4.00743 1.46634 0.26236 1.09861 0.40547
503 7 3.08143 2.59057 3.12986 0.17984 7 - -
504 1.38629 1.38629 1.38629 1.38629
505 0.03704 4.00743 4.00743 1.46634 0.26236 1.09861 0.40547
506 8 0.14284 3.37315 2.79730 3.27414 8 - -
507 1.38629 1.38629 1.38629 1.38629
508 0.03704 4.00743 4.00743 1.46634 0.26236 1.09861 0.40547
509 9 2.94256 3.58053 0.11795 3.48445 9 - -
510 1.38629 1.38629 1.38629 1.38629
511 0.03704 4.00743 4.00743 1.46634 0.26236 1.09861 0.40547
512 10 2.94256 3.58053 0.11795 3.48445 10 - -
513 1.38629 1.38629 1.38629 1.38629
514 0.03704 4.00743 4.00743 1.46634 0.26236 1.09861 0.40547
515 11 3.08143 2.59057 3.12986 0.17984 11 - -
516 1.38629 1.38629 1.38629 1.38629
517 0.03704 4.00743 4.00743 1.46634 0.26236 1.09861 0.40547
518 12 2.94256 3.58053 0.11795 3.48445 12 - -
519 1.38629 1.38629 1.38629 1.38629
520 0.03704 4.00743 4.00743 1.46634 0.26236 1.09861 0.40547
521 13 3.08143 2.59057 3.12986 0.17984 13 - -
522 1.38629 1.38629 1.38629 1.38629
523 0.03704 4.00743 4.00743 1.46634 0.26236 1.09861 0.40547
524 14 3.42491 0.13119 3.47471 2.82302 14 - -
525 1.38629 1.38629 1.38629 1.38629
526 0.03704 4.00743 4.00743 1.46634 0.26236 1.09861 0.40547
527 15 3.42491 0.13119 3.47471 2.82302 15 - -
528 1.38629 1.38629 1.38629 1.38629
529 0.03704 4.00743 4.00743 1.46634 0.26236 1.09861 0.40547
530 16 3.42491 0.13119 3.47471 2.82302 16 - -
531 1.38629 1.38629 1.38629 1.38629
532 0.03704 4.00743 4.00743 1.46634 0.26236 1.09861 0.40547
533 17 3.42491 0.13119 3.47471 2.82302 17 - -
534 1.38629 1.38629 1.38629 1.38629
535 0.03704 4.00743 4.00743 1.46634 0.26236 1.09861 0.40547
536 18 3.08143 2.59057 3.12986 0.17984 18 - -
537 1.38629 1.38629 1.38629 1.38629
538 0.03704 4.00743 4.00743 1.46634 0.26236 1.09861 0.40547
539 19 3.08143 2.59057 3.12986 0.17984 19 - -
540 1.38629 1.38629 1.38629 1.38629
541 0.03704 4.00743 4.00743 1.46634 0.26236 1.09861 0.40547
542 20 2.94256 3.58053 0.11795 3.48445 20 - -
543 1.38629 1.38629 1.38629 1.38629
544 0.03704 4.00743 4.00743 1.46634 0.26236 1.09861 0.40547
545 21 2.94256 3.58053 0.11795 3.48445 21 - -
546 1.38629 1.38629 1.38629 1.38629
547 0.03704 4.00743 4.00743 1.46634 0.26236 1.09861 0.40547
548 22 0.14284 3.37315 2.79730 3.27414 22 - -
549 1.38629 1.38629 1.38629 1.38629
550 0.03704 4.00743 4.00743 1.46634 0.26236 1.09861 0.40547
551 23 2.94256 3.58053 0.11795 3.48445 23 - -
552 1.38629 1.38629 1.38629 1.38629
553 0.03704 4.00743 4.00743 1.46634 0.26236 1.09861 0.40547
554 24 3.42491 0.13119 3.47471 2.82302 24 - -
555 1.38629 1.38629 1.38629 1.38629
556 0.03704 4.00743 4.00743 1.46634 0.26236 1.09861 0.40547
557 25 0.14284 3.37315 2.79730 3.27414 25 - -
558 1.38629 1.38629 1.38629 1.38629
559 0.03704 4.00743 4.00743 1.46634 0.26236 1.09861 0.40547
560 26 3.08143 2.59057 3.12986 0.17984 26 - -
561 1.38629 1.38629 1.38629 1.38629
562 0.03704 4.00743 4.00743 1.46634 0.26236 1.09861 0.40547
563 27 2.94256 3.58053 0.11795 3.48445 27 - -
564 1.38629 1.38629 1.38629 1.38629
565 0.03704 4.00743 4.00743 1.46634 0.26236 1.09861 0.40547
566 28 3.42491 0.13119 3.47471 2.82302 28 - -
567 1.38629 1.38629 1.38629 1.38629
568 0.03704 4.00743 4.00743 1.46634 0.26236 1.09861 0.40547
569 29 3.42491 0.13119 3.47471 2.82302 29 - -
570 1.38629 1.38629 1.38629 1.38629
571 0.03704 4.00743 4.00743 1.46634 0.26236 1.09861 0.40547
572 30 3.08143 2.59057 3.12986 0.17984 30 - -
573 1.38629 1.38629 1.38629 1.38629
574 0.03704 4.00743 4.00743 1.46634 0.26236 1.09861 0.40547
575 31 3.42491 0.13119 3.47471 2.82302 31 - -
576 1.38629 1.38629 1.38629 1.38629
577 0.03704 4.00743 4.00743 1.46634 0.26236 1.09861 0.40547
578 32 3.42491 0.13119 3.47471 2.82302 32 - -
579 1.38629 1.38629 1.38629 1.38629
580 0.03704 4.00743 4.00743 1.46634 0.26236 1.09861 0.40547
581 33 3.08143 2.59057 3.12986 0.17984 33 - -
582 1.38629 1.38629 1.38629 1.38629
583 0.03704 4.00743 4.00743 1.46634 0.26236 1.09861 0.40547
584 34 3.08143 2.59057 3.12986 0.17984 34 - -
585 1.38629 1.38629 1.38629 1.38629
586 0.03704 4.00743 4.00743 1.46634 0.26236 1.09861 0.40547
587 35 3.42491 0.13119 3.47471 2.82302 35 - -
588 1.38629 1.38629 1.38629 1.38629
589 0.03704 4.00743 4.00743 1.46634 0.26236 1.09861 0.40547
590 36 0.14284 3.37315 2.79730 3.27414 36 - -
591 1.38629 1.38629 1.38629 1.38629
592 0.03704 4.00743 4.00743 1.46634 0.26236 1.09861 0.40547
593 37 2.94256 3.58053 0.11795 3.48445 37 - -
594 1.38629 1.38629 1.38629 1.38629
595 0.03704 4.00743 4.00743 1.46634 0.26236 1.09861 0.40547
596 38 3.08143 2.59057 3.12986 0.17984 38 - -
597 1.38629 1.38629 1.38629 1.38629
598 0.03704 4.00743 4.00743 1.46634 0.26236 1.09861 0.40547
599 39 2.94256 3.58053 0.11795 3.48445 39 - -
600 1.38629 1.38629 1.38629 1.38629
601 0.03704 4.00743 4.00743 1.46634 0.26236 1.09861 0.40547
602 40 3.08143 2.59057 3.12986 0.17984 40 - -
603 1.38629 1.38629 1.38629 1.38629
604 0.03704 4.00743 4.00743 1.46634 0.26236 1.09861 0.40547
605 41 3.42491 0.13119 3.47471 2.82302 41 - -
606 1.38629 1.38629 1.38629 1.38629
607 0.03704 4.00743 4.00743 1.46634 0.26236 1.09861 0.40547
608 42 2.94256 3.58053 0.11795 3.48445 42 - -
609 1.38629 1.38629 1.38629 1.38629
610 0.03704 4.00743 4.00743 1.46634 0.26236 1.09861 0.40547
611 43 3.08143 2.59057 3.12986 0.17984 43 - -
612 1.38629 1.38629 1.38629 1.38629
613 0.03704 4.00743 4.00743 1.46634 0.26236 1.09861 0.40547
614 44 2.60420 2.95771 0.24740 2.37221 44 - -
615 1.38629 1.38629 1.38629 1.38629
616 0.03704 4.00743 4.00743 1.46634 0.26236 1.09861 0.40547
617 45 3.08143 2.59057 3.12986 0.17984 45 - -
618 1.38629 1.38629 1.38629 1.38629
619 0.01869 3.98908 * 1.46634 0.26236 0.00000 *
620 //
621 HMMER3/b [3.0 | March 2010]
622 NAME 3_End_Rhizaria_58S_end_seven_long
623 LENG 45
624 ALPH DNA
625 RF no
626 CS no
627 MAP yes
628 DATE Fri Jan 20 15:32:29 2012
629 NSEQ 2
630 EFFN 2.000000
631 CKSUM 1282913076
632 STATS LOCAL MSV -7.6189 0.72738
633 STATS LOCAL VITERBI -8.4211 0.72738
634 STATS LOCAL FORWARD -3.5871 0.72738
635 HMM A C G T
636 m->m m->i m->d i->m i->i d->m d->d
637 COMPO 1.18710 1.48221 1.25579 1.69877
638 1.38629 1.38629 1.38629 1.38629
639 0.04879 3.73767 3.73767 1.46634 0.26236 0.00000 *
640 1 2.53331 3.02441 0.20344 2.88069 1 - -
641 1.38629 1.38629 1.38629 1.38629
642 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
643 2 0.23862 2.84929 2.43386 2.70756 2 - -
644 1.38629 1.38629 1.38629 1.38629
645 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
646 3 0.23862 2.84929 2.43386 2.70756 3 - -
647 1.38629 1.38629 1.38629 1.38629
648 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
649 4 2.57915 2.25909 2.64442 0.28946 4 - -
650 1.38629 1.38629 1.38629 1.38629
651 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
652 5 0.23862 2.84929 2.43386 2.70756 5 - -
653 1.38629 1.38629 1.38629 1.38629
654 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
655 6 0.23862 2.84929 2.43386 2.70756 6 - -
656 1.38629 1.38629 1.38629 1.38629
657 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
658 7 0.23862 2.84929 2.43386 2.70756 7 - -
659 1.38629 1.38629 1.38629 1.38629
660 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
661 8 2.81865 0.23582 2.88868 2.35662 8 - -
662 1.38629 1.38629 1.38629 1.38629
663 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
664 9 2.81865 0.23582 2.88868 2.35662 9 - -
665 1.38629 1.38629 1.38629 1.38629
666 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
667 10 2.81865 0.23582 2.88868 2.35662 10 - -
668 1.38629 1.38629 1.38629 1.38629
669 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
670 11 2.53331 3.02441 0.20344 2.88069 11 - -
671 1.38629 1.38629 1.38629 1.38629
672 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
673 12 2.81865 0.23582 2.88868 2.35662 12 - -
674 1.38629 1.38629 1.38629 1.38629
675 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
676 13 0.23862 2.84929 2.43386 2.70756 13 - -
677 1.38629 1.38629 1.38629 1.38629
678 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
679 14 2.57915 2.25909 2.64442 0.28946 14 - -
680 1.38629 1.38629 1.38629 1.38629
681 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
682 15 0.23862 2.84929 2.43386 2.70756 15 - -
683 1.38629 1.38629 1.38629 1.38629
684 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
685 16 2.53331 3.02441 0.20344 2.88069 16 - -
686 1.38629 1.38629 1.38629 1.38629
687 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
688 17 2.53331 3.02441 0.20344 2.88069 17 - -
689 1.38629 1.38629 1.38629 1.38629
690 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
691 18 2.53331 3.02441 0.20344 2.88069 18 - -
692 1.38629 1.38629 1.38629 1.38629
693 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
694 19 0.23862 2.84929 2.43386 2.70756 19 - -
695 1.38629 1.38629 1.38629 1.38629
696 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
697 20 2.57915 2.25909 2.64442 0.28946 20 - -
698 1.38629 1.38629 1.38629 1.38629
699 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
700 21 2.53331 3.02441 0.20344 2.88069 21 - -
701 1.38629 1.38629 1.38629 1.38629
702 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
703 22 0.23862 2.84929 2.43386 2.70756 22 - -
704 1.38629 1.38629 1.38629 1.38629
705 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
706 23 2.53331 3.02441 0.20344 2.88069 23 - -
707 1.38629 1.38629 1.38629 1.38629
708 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
709 24 2.81865 0.23582 2.88868 2.35662 24 - -
710 1.38629 1.38629 1.38629 1.38629
711 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
712 25 0.23862 2.84929 2.43386 2.70756 25 - -
713 1.38629 1.38629 1.38629 1.38629
714 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
715 26 2.57915 2.25909 2.64442 0.28946 26 - -
716 1.38629 1.38629 1.38629 1.38629
717 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
718 27 2.53331 3.02441 0.20344 2.88069 27 - -
719 1.38629 1.38629 1.38629 1.38629
720 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
721 28 2.81865 0.23582 2.88868 2.35662 28 - -
722 1.38629 1.38629 1.38629 1.38629
723 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
724 29 2.57915 2.25909 2.64442 0.28946 29 - -
725 1.38629 1.38629 1.38629 1.38629
726 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
727 30 2.57915 2.25909 2.64442 0.28946 30 - -
728 1.38629 1.38629 1.38629 1.38629
729 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
730 31 0.23862 2.84929 2.43386 2.70756 31 - -
731 1.38629 1.38629 1.38629 1.38629
732 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
733 32 2.53331 3.02441 0.20344 2.88069 32 - -
734 1.38629 1.38629 1.38629 1.38629
735 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
736 33 2.81865 0.23582 2.88868 2.35662 33 - -
737 1.38629 1.38629 1.38629 1.38629
738 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
739 34 0.23862 2.84929 2.43386 2.70756 34 - -
740 1.38629 1.38629 1.38629 1.38629
741 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
742 35 2.81865 0.23582 2.88868 2.35662 35 - -
743 1.38629 1.38629 1.38629 1.38629
744 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
745 36 0.23862 2.84929 2.43386 2.70756 36 - -
746 1.38629 1.38629 1.38629 1.38629
747 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
748 37 2.53331 3.02441 0.20344 2.88069 37 - -
749 1.38629 1.38629 1.38629 1.38629
750 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
751 38 2.57915 2.25909 2.64442 0.28946 38 - -
752 1.38629 1.38629 1.38629 1.38629
753 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
754 39 2.53331 3.02441 0.20344 2.88069 39 - -
755 1.38629 1.38629 1.38629 1.38629
756 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
757 40 0.23862 2.84929 2.43386 2.70756 40 - -
758 1.38629 1.38629 1.38629 1.38629
759 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
760 41 2.81865 0.23582 2.88868 2.35662 41 - -
761 1.38629 1.38629 1.38629 1.38629
762 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
763 42 2.53331 3.02441 0.20344 2.88069 42 - -
764 1.38629 1.38629 1.38629 1.38629
765 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
766 43 0.23862 2.84929 2.43386 2.70756 43 - -
767 1.38629 1.38629 1.38629 1.38629
768 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
769 44 2.81865 0.23582 2.88868 2.35662 44 - -
770 1.38629 1.38629 1.38629 1.38629
771 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
772 45 2.53331 3.02441 0.20344 2.88069 45 - -
773 1.38629 1.38629 1.38629 1.38629
774 0.02469 3.71357 * 1.46634 0.26236 0.00000 *
775 //
776 HMMER3/b [3.0 | March 2010]
777 NAME 3_End_Rhizaria_58S_end_six_long
778 LENG 45
779 ALPH DNA
780 RF no
781 CS no
782 MAP yes
783 DATE Fri Jan 20 15:32:22 2012
784 NSEQ 2
785 EFFN 2.000000
786 CKSUM 1451329582
787 STATS LOCAL MSV -7.5458 0.72716
788 STATS LOCAL VITERBI -8.4016 0.72716
789 STATS LOCAL FORWARD -3.3619 0.72716
790 HMM A C G T
791 m->m m->i m->d i->m i->i d->m d->d
792 COMPO 1.39238 1.54778 1.06991 1.63088
793 1.38629 1.38629 1.38629 1.38629
794 0.04879 3.73767 3.73767 1.46634 0.26236 0.00000 *
795 1 2.57915 2.25909 2.64442 0.28946 1 - -
796 1.38629 1.38629 1.38629 1.38629
797 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
798 2 0.23862 2.84929 2.43386 2.70756 2 - -
799 1.38629 1.38629 1.38629 1.38629
800 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
801 3 0.23862 2.84929 2.43386 2.70756 3 - -
802 1.38629 1.38629 1.38629 1.38629
803 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
804 4 2.53331 3.02441 0.20344 2.88069 4 - -
805 1.38629 1.38629 1.38629 1.38629
806 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
807 5 2.57915 2.25909 2.64442 0.28946 5 - -
808 1.38629 1.38629 1.38629 1.38629
809 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
810 6 0.23862 2.84929 2.43386 2.70756 6 - -
811 1.38629 1.38629 1.38629 1.38629
812 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
813 7 2.81865 0.23582 2.88868 2.35662 7 - -
814 1.38629 1.38629 1.38629 1.38629
815 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
816 8 2.81865 0.23582 2.88868 2.35662 8 - -
817 1.38629 1.38629 1.38629 1.38629
818 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
819 9 2.57915 2.25909 2.64442 0.28946 9 - -
820 1.38629 1.38629 1.38629 1.38629
821 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
822 10 2.81865 0.23582 2.88868 2.35662 10 - -
823 1.38629 1.38629 1.38629 1.38629
824 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
825 11 2.53331 3.02441 0.20344 2.88069 11 - -
826 1.38629 1.38629 1.38629 1.38629
827 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
828 12 2.53331 3.02441 0.20344 2.88069 12 - -
829 1.38629 1.38629 1.38629 1.38629
830 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
831 13 2.53331 3.02441 0.20344 2.88069 13 - -
832 1.38629 1.38629 1.38629 1.38629
833 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
834 14 0.23862 2.84929 2.43386 2.70756 14 - -
835 1.38629 1.38629 1.38629 1.38629
836 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
837 15 0.23862 2.84929 2.43386 2.70756 15 - -
838 1.38629 1.38629 1.38629 1.38629
839 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
840 16 2.53331 3.02441 0.20344 2.88069 16 - -
841 1.38629 1.38629 1.38629 1.38629
842 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
843 17 2.53331 3.02441 0.20344 2.88069 17 - -
844 1.38629 1.38629 1.38629 1.38629
845 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
846 18 2.53331 3.02441 0.20344 2.88069 18 - -
847 1.38629 1.38629 1.38629 1.38629
848 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
849 19 2.53331 3.02441 0.20344 2.88069 19 - -
850 1.38629 1.38629 1.38629 1.38629
851 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
852 20 2.57915 2.25909 2.64442 0.28946 20 - -
853 1.38629 1.38629 1.38629 1.38629
854 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
855 21 2.53331 3.02441 0.20344 2.88069 21 - -
856 1.38629 1.38629 1.38629 1.38629
857 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
858 22 0.23862 2.84929 2.43386 2.70756 22 - -
859 1.38629 1.38629 1.38629 1.38629
860 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
861 23 2.53331 3.02441 0.20344 2.88069 23 - -
862 1.38629 1.38629 1.38629 1.38629
863 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
864 24 2.81865 0.23582 2.88868 2.35662 24 - -
865 1.38629 1.38629 1.38629 1.38629
866 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
867 25 0.23862 2.84929 2.43386 2.70756 25 - -
868 1.38629 1.38629 1.38629 1.38629
869 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
870 26 2.57915 2.25909 2.64442 0.28946 26 - -
871 1.38629 1.38629 1.38629 1.38629
872 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
873 27 2.53331 3.02441 0.20344 2.88069 27 - -
874 1.38629 1.38629 1.38629 1.38629
875 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
876 28 2.81865 0.23582 2.88868 2.35662 28 - -
877 1.38629 1.38629 1.38629 1.38629
878 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
879 29 2.57915 2.25909 2.64442 0.28946 29 - -
880 1.38629 1.38629 1.38629 1.38629
881 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
882 30 2.57915 2.25909 2.64442 0.28946 30 - -
883 1.38629 1.38629 1.38629 1.38629
884 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
885 31 0.23862 2.84929 2.43386 2.70756 31 - -
886 1.38629 1.38629 1.38629 1.38629
887 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
888 32 2.53331 3.02441 0.20344 2.88069 32 - -
889 1.38629 1.38629 1.38629 1.38629
890 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
891 33 2.81865 0.23582 2.88868 2.35662 33 - -
892 1.38629 1.38629 1.38629 1.38629
893 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
894 34 2.53331 3.02441 0.20344 2.88069 34 - -
895 1.38629 1.38629 1.38629 1.38629
896 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
897 35 2.81865 0.23582 2.88868 2.35662 35 - -
898 1.38629 1.38629 1.38629 1.38629
899 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
900 36 0.23862 2.84929 2.43386 2.70756 36 - -
901 1.38629 1.38629 1.38629 1.38629
902 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
903 37 2.53331 3.02441 0.20344 2.88069 37 - -
904 1.38629 1.38629 1.38629 1.38629
905 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
906 38 2.57915 2.25909 2.64442 0.28946 38 - -
907 1.38629 1.38629 1.38629 1.38629
908 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
909 39 2.53331 3.02441 0.20344 2.88069 39 - -
910 1.38629 1.38629 1.38629 1.38629
911 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
912 40 0.23862 2.84929 2.43386 2.70756 40 - -
913 1.38629 1.38629 1.38629 1.38629
914 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
915 41 2.81865 0.23582 2.88868 2.35662 41 - -
916 1.38629 1.38629 1.38629 1.38629
917 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
918 42 2.53331 3.02441 0.20344 2.88069 42 - -
919 1.38629 1.38629 1.38629 1.38629
920 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
921 43 0.23862 2.84929 2.43386 2.70756 43 - -
922 1.38629 1.38629 1.38629 1.38629
923 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
924 44 2.81865 0.23582 2.88868 2.35662 44 - -
925 1.38629 1.38629 1.38629 1.38629
926 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
927 45 2.53331 3.02441 0.20344 2.88069 45 - -
928 1.38629 1.38629 1.38629 1.38629
929 0.02469 3.71357 * 1.46634 0.26236 0.00000 *
930 //
931 HMMER3/b [3.0 | March 2010]
932 NAME 3_End_Rhizaria_58S_end_three_long
933 LENG 45
934 ALPH DNA
935 RF no
936 CS no
937 MAP yes
938 DATE Fri Jan 20 15:31:56 2012
939 NSEQ 17
940 EFFN 3.830811
941 CKSUM 1105590603
942 STATS LOCAL MSV -7.0323 0.71931
943 STATS LOCAL VITERBI -7.7236 0.71931
944 STATS LOCAL FORWARD -4.0046 0.71931
945 HMM A C G T
946 m->m m->i m->d i->m i->i d->m d->d
947 COMPO 1.67592 1.39884 1.36030 1.17313
948 1.38629 1.38629 1.38629 1.38629
949 0.03373 4.09947 4.09947 1.46634 0.26236 0.00000 *
950 1 3.60462 0.11149 3.64650 2.95231 1 - -
951 1.38629 1.38629 1.38629 1.38629
952 0.03373 4.09947 4.09947 1.46634 0.26236 1.09861 0.40547
953 2 3.04933 3.73739 0.10202 3.65808 2 - -
954 1.38629 1.38629 1.38629 1.38629
955 0.03373 4.09947 4.09947 1.46634 0.26236 1.09861 0.40547
956 3 3.13157 0.22889 3.19022 2.12218 3 - -
957 1.38629 1.38629 1.38629 1.38629
958 0.03373 4.09947 4.09947 1.46634 0.26236 1.09861 0.40547
959 4 3.24239 2.69270 3.28457 0.15575 4 - -
960 1.38629 1.38629 1.38629 1.38629
961 0.03373 4.09947 4.09947 1.46634 0.26236 1.09861 0.40547
962 5 3.24239 2.69270 3.28457 0.15575 5 - -
963 1.38629 1.38629 1.38629 1.38629
964 0.03373 4.09947 4.09947 1.46634 0.26236 1.09861 0.40547
965 6 2.50122 1.00748 2.57173 0.74134 6 - -
966 1.38629 1.38629 1.38629 1.38629
967 0.03373 4.09947 4.09947 1.46634 0.26236 1.09861 0.40547
968 7 3.60462 0.11149 3.64650 2.95231 7 - -
969 1.38629 1.38629 1.38629 1.38629
970 0.03373 4.09947 4.09947 1.46634 0.26236 1.09861 0.40547
971 8 3.04933 3.73739 0.10202 3.65808 8 - -
972 1.38629 1.38629 1.38629 1.38629
973 0.03373 4.09947 4.09947 1.46634 0.26236 1.09861 0.40547
974 9 0.12362 3.52998 2.89846 3.44617 9 - -
975 1.38629 1.38629 1.38629 1.38629
976 0.03373 4.09947 4.09947 1.46634 0.26236 1.09861 0.40547
977 10 3.04933 3.73739 0.10202 3.65808 10 - -
978 1.38629 1.38629 1.38629 1.38629
979 0.03373 4.09947 4.09947 1.46634 0.26236 1.09861 0.40547
980 11 0.12362 3.52998 2.89846 3.44617 11 - -
981 1.38629 1.38629 1.38629 1.38629
982 0.03373 4.09947 4.09947 1.46634 0.26236 1.09861 0.40547
983 12 3.24239 2.69270 3.28457 0.15575 12 - -
984 1.38629 1.38629 1.38629 1.38629
985 0.03373 4.09947 4.09947 1.46634 0.26236 1.09861 0.40547
986 13 0.12362 3.52998 2.89846 3.44617 13 - -
987 1.38629 1.38629 1.38629 1.38629
988 0.03373 4.09947 4.09947 1.46634 0.26236 1.09861 0.40547
989 14 2.50122 1.00748 2.57173 0.74134 14 - -
990 1.38629 1.38629 1.38629 1.38629
991 0.03373 4.09947 4.09947 1.46634 0.26236 1.09861 0.40547
992 15 3.60462 0.11149 3.64650 2.95231 15 - -
993 1.38629 1.38629 1.38629 1.38629
994 0.03373 4.09947 4.09947 1.46634 0.26236 1.09861 0.40547
995 16 3.60462 0.11149 3.64650 2.95231 16 - -
996 1.38629 1.38629 1.38629 1.38629
997 0.03373 4.09947 4.09947 1.46634 0.26236 1.09861 0.40547
998 17 3.24239 2.69270 3.28457 0.15575 17 - -
999 1.38629 1.38629 1.38629 1.38629
1000 0.03373 4.09947 4.09947 1.46634 0.26236 1.09861 0.40547
1001 18 3.24239 2.69270 3.28457 0.15575 18 - -
1002 1.38629 1.38629 1.38629 1.38629
1003 0.03373 4.09947 4.09947 1.46634 0.26236 1.09861 0.40547
1004 19 3.04933 3.73739 0.10202 3.65808 19 - -
1005 1.38629 1.38629 1.38629 1.38629
1006 0.03373 4.09947 4.09947 1.46634 0.26236 1.09861 0.40547
1007 20 0.77230 2.60186 0.97173 2.45942 20 - -
1008 1.38629 1.38629 1.38629 1.38629
1009 0.03373 4.09947 4.09947 1.46634 0.26236 1.09861 0.40547
1010 21 0.12362 3.52998 2.89846 3.44617 21 - -
1011 1.38629 1.38629 1.38629 1.38629
1012 0.03373 4.09947 4.09947 1.46634 0.26236 1.09861 0.40547
1013 22 0.12362 3.52998 2.89846 3.44617 22 - -
1014 1.38629 1.38629 1.38629 1.38629
1015 0.03373 4.09947 4.09947 1.46634 0.26236 1.09861 0.40547
1016 23 3.04933 3.73739 0.10202 3.65808 23 - -
1017 1.38629 1.38629 1.38629 1.38629
1018 0.03373 4.09947 4.09947 1.46634 0.26236 1.09861 0.40547
1019 24 3.60462 0.11149 3.64650 2.95231 24 - -
1020 1.38629 1.38629 1.38629 1.38629
1021 0.03373 4.09947 4.09947 1.46634 0.26236 1.09861 0.40547
1022 25 0.12362 3.52998 2.89846 3.44617 25 - -
1023 1.38629 1.38629 1.38629 1.38629
1024 0.03373 4.09947 4.09947 1.46634 0.26236 1.09861 0.40547
1025 26 3.24239 2.69270 3.28457 0.15575 26 - -
1026 1.38629 1.38629 1.38629 1.38629
1027 0.03373 4.09947 4.09947 1.46634 0.26236 1.09861 0.40547
1028 27 3.04933 3.73739 0.10202 3.65808 27 - -
1029 1.38629 1.38629 1.38629 1.38629
1030 0.03373 4.09947 4.09947 1.46634 0.26236 1.09861 0.40547
1031 28 3.60462 0.11149 3.64650 2.95231 28 - -
1032 1.38629 1.38629 1.38629 1.38629
1033 0.03373 4.09947 4.09947 1.46634 0.26236 1.09861 0.40547
1034 29 3.60462 0.11149 3.64650 2.95231 29 - -
1035 1.38629 1.38629 1.38629 1.38629
1036 0.03373 4.09947 4.09947 1.46634 0.26236 1.09861 0.40547
1037 30 3.24239 2.69270 3.28457 0.15575 30 - -
1038 1.38629 1.38629 1.38629 1.38629
1039 0.03373 4.09947 4.09947 1.46634 0.26236 1.09861 0.40547
1040 31 3.60462 0.11149 3.64650 2.95231 31 - -
1041 1.38629 1.38629 1.38629 1.38629
1042 0.03373 4.09947 4.09947 1.46634 0.26236 1.09861 0.40547
1043 32 3.24239 2.69270 3.28457 0.15575 32 - -
1044 1.38629 1.38629 1.38629 1.38629
1045 0.03373 4.09947 4.09947 1.46634 0.26236 1.09861 0.40547
1046 33 3.24239 2.69270 3.28457 0.15575 33 - -
1047 1.38629 1.38629 1.38629 1.38629
1048 0.03373 4.09947 4.09947 1.46634 0.26236 1.09861 0.40547
1049 34 3.24239 2.69270 3.28457 0.15575 34 - -
1050 1.38629 1.38629 1.38629 1.38629
1051 0.03373 4.09947 4.09947 1.46634 0.26236 1.09861 0.40547
1052 35 3.04933 3.73739 0.10202 3.65808 35 - -
1053 1.38629 1.38629 1.38629 1.38629
1054 0.03373 4.09947 4.09947 1.46634 0.26236 1.09861 0.40547
1055 36 0.12362 3.52998 2.89846 3.44617 36 - -
1056 1.38629 1.38629 1.38629 1.38629
1057 0.03373 4.09947 4.09947 1.46634 0.26236 1.09861 0.40547
1058 37 3.04933 3.73739 0.10202 3.65808 37 - -
1059 1.38629 1.38629 1.38629 1.38629
1060 0.03373 4.09947 4.09947 1.46634 0.26236 1.09861 0.40547
1061 38 3.24239 2.69270 3.28457 0.15575 38 - -
1062 1.38629 1.38629 1.38629 1.38629
1063 0.03373 4.09947 4.09947 1.46634 0.26236 1.09861 0.40547
1064 39 2.26733 3.33268 0.19735 3.22358 39 - -
1065 1.38629 1.38629 1.38629 1.38629
1066 0.03373 4.09947 4.09947 1.46634 0.26236 1.09861 0.40547
1067 40 3.24239 2.69270 3.28457 0.15575 40 - -
1068 1.38629 1.38629 1.38629 1.38629
1069 0.03373 4.09947 4.09947 1.46634 0.26236 1.09861 0.40547
1070 41 3.60462 0.11149 3.64650 2.95231 41 - -
1071 1.38629 1.38629 1.38629 1.38629
1072 0.03373 4.09947 4.09947 1.46634 0.26236 1.09861 0.40547
1073 42 3.04933 3.73739 0.10202 3.65808 42 - -
1074 1.38629 1.38629 1.38629 1.38629
1075 0.03373 4.09947 4.09947 1.46634 0.26236 1.09861 0.40547
1076 43 3.04933 3.73739 0.10202 3.65808 43 - -
1077 1.38629 1.38629 1.38629 1.38629
1078 0.03373 4.09947 4.09947 1.46634 0.26236 1.09861 0.40547
1079 44 3.24239 2.69270 3.28457 0.15575 44 - -
1080 1.38629 1.38629 1.38629 1.38629
1081 0.03373 4.09947 4.09947 1.46634 0.26236 1.09861 0.40547
1082 45 3.24239 2.69270 3.28457 0.15575 45 - -
1083 1.38629 1.38629 1.38629 1.38629
1084 0.01700 4.08275 * 1.46634 0.26236 0.00000 *
1085 //
1086 HMMER3/b [3.0 | March 2010]
1087 NAME 3_End_Rhizaria_58S_end_two_long
1088 LENG 45
1089 ALPH DNA
1090 RF no
1091 CS no
1092 MAP yes
1093 DATE Fri Jan 20 15:31:48 2012
1094 NSEQ 17
1095 EFFN 3.249756
1096 CKSUM 3604078727
1097 STATS LOCAL MSV -8.1048 0.71933
1098 STATS LOCAL VITERBI -7.9622 0.71933
1099 STATS LOCAL FORWARD -4.0599 0.71933
1100 HMM A C G T
1101 m->m m->i m->d i->m i->i d->m d->d
1102 COMPO 1.73670 1.25612 1.25633 1.36866
1103 1.38629 1.38629 1.38629 1.38629
1104 0.03739 3.99816 3.99816 1.46634 0.26236 0.00000 *
1105 1 2.93097 3.56372 0.11982 3.46591 1 - -
1106 1.38629 1.38629 1.38629 1.38629
1107 0.03739 3.99816 3.99816 1.46634 0.26236 1.09861 0.40547
1108 2 3.40585 0.13351 3.45646 2.80911 2 - -
1109 1.38629 1.38629 1.38629 1.38629
1110 0.03739 3.99816 3.99816 1.46634 0.26236 1.09861 0.40547
1111 3 2.93097 3.56372 0.11982 3.46591 3 - -
1112 1.38629 1.38629 1.38629 1.38629
1113 0.03739 3.99816 3.99816 1.46634 0.26236 1.09861 0.40547
1114 4 3.40585 0.13351 3.45646 2.80911 4 - -
1115 1.38629 1.38629 1.38629 1.38629
1116 0.03739 3.99816 3.99816 1.46634 0.26236 1.09861 0.40547
1117 5 3.06482 2.58000 3.11388 0.18256 5 - -
1118 1.38629 1.38629 1.38629 1.38629
1119 0.03739 3.99816 3.99816 1.46634 0.26236 1.09861 0.40547
1120 6 3.06482 2.58000 3.11388 0.18256 6 - -
1121 1.38629 1.38629 1.38629 1.38629
1122 0.03739 3.99816 3.99816 1.46634 0.26236 1.09861 0.40547
1123 7 3.06482 2.58000 3.11388 0.18256 7 - -
1124 1.38629 1.38629 1.38629 1.38629
1125 0.03739 3.99816 3.99816 1.46634 0.26236 1.09861 0.40547
1126 8 3.40585 0.13351 3.45646 2.80911 8 - -
1127 1.38629 1.38629 1.38629 1.38629
1128 0.03739 3.99816 3.99816 1.46634 0.26236 1.09861 0.40547
1129 9 2.93097 3.56372 0.11982 3.46591 9 - -
1130 1.38629 1.38629 1.38629 1.38629
1131 0.03739 3.99816 3.99816 1.46634 0.26236 1.09861 0.40547
1132 10 0.23441 2.58428 2.59978 2.82642 10 - -
1133 1.38629 1.38629 1.38629 1.38629
1134 0.03739 3.99816 3.99816 1.46634 0.26236 1.09861 0.40547
1135 11 2.93097 3.56372 0.11982 3.46591 11 - -
1136 1.38629 1.38629 1.38629 1.38629
1137 0.03739 3.99816 3.99816 1.46634 0.26236 1.09861 0.40547
1138 12 0.14506 3.35663 2.78655 3.25606 12 - -
1139 1.38629 1.38629 1.38629 1.38629
1140 0.03739 3.99816 3.99816 1.46634 0.26236 1.09861 0.40547
1141 13 2.93097 3.56372 0.11982 3.46591 13 - -
1142 1.38629 1.38629 1.38629 1.38629
1143 0.03739 3.99816 3.99816 1.46634 0.26236 1.09861 0.40547
1144 14 3.40585 0.13351 3.45646 2.80911 14 - -
1145 1.38629 1.38629 1.38629 1.38629
1146 0.03739 3.99816 3.99816 1.46634 0.26236 1.09861 0.40547
1147 15 3.40585 0.13351 3.45646 2.80911 15 - -
1148 1.38629 1.38629 1.38629 1.38629
1149 0.03739 3.99816 3.99816 1.46634 0.26236 1.09861 0.40547
1150 16 3.40585 0.13351 3.45646 2.80911 16 - -
1151 1.38629 1.38629 1.38629 1.38629
1152 0.03739 3.99816 3.99816 1.46634 0.26236 1.09861 0.40547
1153 17 3.06482 2.58000 3.11388 0.18256 17 - -
1154 1.38629 1.38629 1.38629 1.38629
1155 0.03739 3.99816 3.99816 1.46634 0.26236 1.09861 0.40547
1156 18 3.40585 0.13351 3.45646 2.80911 18 - -
1157 1.38629 1.38629 1.38629 1.38629
1158 0.03739 3.99816 3.99816 1.46634 0.26236 1.09861 0.40547
1159 19 2.93097 3.56372 0.11982 3.46591 19 - -
1160 1.38629 1.38629 1.38629 1.38629
1161 0.03739 3.99816 3.99816 1.46634 0.26236 1.09861 0.40547
1162 20 2.93097 3.56372 0.11982 3.46591 20 - -
1163 1.38629 1.38629 1.38629 1.38629
1164 0.03739 3.99816 3.99816 1.46634 0.26236 1.09861 0.40547
1165 21 0.14506 3.35663 2.78655 3.25606 21 - -
1166 1.38629 1.38629 1.38629 1.38629
1167 0.03739 3.99816 3.99816 1.46634 0.26236 1.09861 0.40547
1168 22 0.14506 3.35663 2.78655 3.25606 22 - -
1169 1.38629 1.38629 1.38629 1.38629
1170 0.03739 3.99816 3.99816 1.46634 0.26236 1.09861 0.40547
1171 23 2.93097 3.56372 0.11982 3.46591 23 - -
1172 1.38629 1.38629 1.38629 1.38629
1173 0.03739 3.99816 3.99816 1.46634 0.26236 1.09861 0.40547
1174 24 3.40585 0.13351 3.45646 2.80911 24 - -
1175 1.38629 1.38629 1.38629 1.38629
1176 0.03739 3.99816 3.99816 1.46634 0.26236 1.09861 0.40547
1177 25 0.14506 3.35663 2.78655 3.25606 25 - -
1178 1.38629 1.38629 1.38629 1.38629
1179 0.03739 3.99816 3.99816 1.46634 0.26236 1.09861 0.40547
1180 26 3.06482 2.58000 3.11388 0.18256 26 - -
1181 1.38629 1.38629 1.38629 1.38629
1182 0.03739 3.99816 3.99816 1.46634 0.26236 1.09861 0.40547
1183 27 2.93097 3.56372 0.11982 3.46591 27 - -
1184 1.38629 1.38629 1.38629 1.38629
1185 0.03739 3.99816 3.99816 1.46634 0.26236 1.09861 0.40547
1186 28 3.40585 0.13351 3.45646 2.80911 28 - -
1187 1.38629 1.38629 1.38629 1.38629
1188 0.03739 3.99816 3.99816 1.46634 0.26236 1.09861 0.40547
1189 29 3.40585 0.13351 3.45646 2.80911 29 - -
1190 1.38629 1.38629 1.38629 1.38629
1191 0.03739 3.99816 3.99816 1.46634 0.26236 1.09861 0.40547
1192 30 3.06482 2.58000 3.11388 0.18256 30 - -
1193 1.38629 1.38629 1.38629 1.38629
1194 0.03739 3.99816 3.99816 1.46634 0.26236 1.09861 0.40547
1195 31 3.40585 0.13351 3.45646 2.80911 31 - -
1196 1.38629 1.38629 1.38629 1.38629
1197 0.03739 3.99816 3.99816 1.46634 0.26236 1.09861 0.40547
1198 32 3.06482 2.58000 3.11388 0.18256 32 - -
1199 1.38629 1.38629 1.38629 1.38629
1200 0.03739 3.99816 3.99816 1.46634 0.26236 1.09861 0.40547
1201 33 3.40585 0.13351 3.45646 2.80911 33 - -
1202 1.38629 1.38629 1.38629 1.38629
1203 0.03739 3.99816 3.99816 1.46634 0.26236 1.09861 0.40547
1204 34 3.06482 2.58000 3.11388 0.18256 34 - -
1205 1.38629 1.38629 1.38629 1.38629
1206 0.03739 3.99816 3.99816 1.46634 0.26236 1.09861 0.40547
1207 35 2.93097 3.56372 0.11982 3.46591 35 - -
1208 1.38629 1.38629 1.38629 1.38629
1209 0.03739 3.99816 3.99816 1.46634 0.26236 1.09861 0.40547
1210 36 0.14506 3.35663 2.78655 3.25606 36 - -
1211 1.38629 1.38629 1.38629 1.38629
1212 0.03739 3.99816 3.99816 1.46634 0.26236 1.09861 0.40547
1213 37 2.93097 3.56372 0.11982 3.46591 37 - -
1214 1.38629 1.38629 1.38629 1.38629
1215 0.03739 3.99816 3.99816 1.46634 0.26236 1.09861 0.40547
1216 38 3.06482 2.58000 3.11388 0.18256 38 - -
1217 1.38629 1.38629 1.38629 1.38629
1218 0.03739 3.99816 3.99816 1.46634 0.26236 1.09861 0.40547
1219 39 0.14506 3.35663 2.78655 3.25606 39 - -
1220 1.38629 1.38629 1.38629 1.38629
1221 0.03739 3.99816 3.99816 1.46634 0.26236 1.09861 0.40547
1222 40 3.06482 2.58000 3.11388 0.18256 40 - -
1223 1.38629 1.38629 1.38629 1.38629
1224 0.03739 3.99816 3.99816 1.46634 0.26236 1.09861 0.40547
1225 41 3.40585 0.13351 3.45646 2.80911 41 - -
1226 1.38629 1.38629 1.38629 1.38629
1227 0.03739 3.99816 3.99816 1.46634 0.26236 1.09861 0.40547
1228 42 2.93097 3.56372 0.11982 3.46591 42 - -
1229 1.38629 1.38629 1.38629 1.38629
1230 0.03739 3.99816 3.99816 1.46634 0.26236 1.09861 0.40547
1231 43 2.93097 3.56372 0.11982 3.46591 43 - -
1232 1.38629 1.38629 1.38629 1.38629
1233 0.03739 3.99816 3.99816 1.46634 0.26236 1.09861 0.40547
1234 44 3.06482 2.58000 3.11388 0.18256 44 - -
1235 1.38629 1.38629 1.38629 1.38629
1236 0.03739 3.99816 3.99816 1.46634 0.26236 1.09861 0.40547
1237 45 3.06482 2.58000 3.11388 0.18256 45 - -
1238 1.38629 1.38629 1.38629 1.38629
1239 0.01887 3.97964 * 1.46634 0.26236 0.00000 *
1240 //
1241 HMMER3/b [3.0 | March 2010]
1242 NAME 2_5.8_Rhizaria_58S_start_eleven_long
1243 LENG 45
1244 ALPH DNA
1245 RF no
1246 CS no
1247 MAP yes
1248 DATE Sat Jan 7 02:11:53 2012
1249 NSEQ 31
1250 EFFN 3.379272
1251 CKSUM 2165802544
1252 STATS LOCAL MSV -7.4242 0.71932
1253 STATS LOCAL VITERBI -7.6170 0.71932
1254 STATS LOCAL FORWARD -4.3017 0.71932
1255 HMM A C G T
1256 m->m m->i m->d i->m i->i d->m d->d
1257 COMPO 1.55729 1.52929 1.25161 1.24981
1258 1.38629 1.38629 1.38629 1.38629
1259 0.03651 4.02164 4.02164 1.46634 0.26236 0.00000 *
1260 1 2.97916 2.30506 3.03127 0.22170 1 - -
1261 1.38629 1.38629 1.38629 1.38629
1262 0.03651 4.02164 4.02164 1.46634 0.26236 1.09861 0.40547
1263 2 3.45378 0.12777 3.50236 2.84402 2 - -
1264 1.38629 1.38629 1.38629 1.38629
1265 0.03651 4.02164 4.02164 1.46634 0.26236 1.09861 0.40547
1266 3 3.10676 2.60668 3.15422 0.17578 3 - -
1267 1.38629 1.38629 1.38629 1.38629
1268 0.03651 4.02164 4.02164 1.46634 0.26236 1.09861 0.40547
1269 4 2.96001 3.60594 0.11519 3.51250 4 - -
1270 1.38629 1.38629 1.38629 1.38629
1271 0.03651 4.02164 4.02164 1.46634 0.26236 1.09861 0.40547
1272 5 0.13955 3.39821 2.81357 3.30158 5 - -
1273 1.38629 1.38629 1.38629 1.38629
1274 0.03651 4.02164 4.02164 1.46634 0.26236 1.09861 0.40547
1275 6 2.96001 3.60594 0.11519 3.51250 6 - -
1276 1.38629 1.38629 1.38629 1.38629
1277 0.03651 4.02164 4.02164 1.46634 0.26236 1.09861 0.40547
1278 7 2.96001 3.60594 0.11519 3.51250 7 - -
1279 1.38629 1.38629 1.38629 1.38629
1280 0.03651 4.02164 4.02164 1.46634 0.26236 1.09861 0.40547
1281 8 3.45378 0.12777 3.50236 2.84402 8 - -
1282 1.38629 1.38629 1.38629 1.38629
1283 0.03651 4.02164 4.02164 1.46634 0.26236 1.09861 0.40547
1284 9 3.10676 2.60668 3.15422 0.17578 9 - -
1285 1.38629 1.38629 1.38629 1.38629
1286 0.03651 4.02164 4.02164 1.46634 0.26236 1.09861 0.40547
1287 10 3.10676 2.60668 3.15422 0.17578 10 - -
1288 1.38629 1.38629 1.38629 1.38629
1289 0.03651 4.02164 4.02164 1.46634 0.26236 1.09861 0.40547
1290 11 3.45378 0.12777 3.50236 2.84402 11 - -
1291 1.38629 1.38629 1.38629 1.38629
1292 0.03651 4.02164 4.02164 1.46634 0.26236 1.09861 0.40547
1293 12 0.13955 3.39821 2.81357 3.30158 12 - -
1294 1.38629 1.38629 1.38629 1.38629
1295 0.03651 4.02164 4.02164 1.46634 0.26236 1.09861 0.40547
1296 13 3.10676 2.60668 3.15422 0.17578 13 - -
1297 1.38629 1.38629 1.38629 1.38629
1298 0.03651 4.02164 4.02164 1.46634 0.26236 1.09861 0.40547
1299 14 0.13955 3.39821 2.81357 3.30158 14 - -
1300 1.38629 1.38629 1.38629 1.38629
1301 0.03651 4.02164 4.02164 1.46634 0.26236 1.09861 0.40547
1302 15 0.13955 3.39821 2.81357 3.30158 15 - -
1303 1.38629 1.38629 1.38629 1.38629
1304 0.03651 4.02164 4.02164 1.46634 0.26236 1.09861 0.40547
1305 16 0.13955 3.39821 2.81357 3.30158 16 - -
1306 1.38629 1.38629 1.38629 1.38629
1307 0.03651 4.02164 4.02164 1.46634 0.26236 1.09861 0.40547
1308 17 3.45378 0.12777 3.50236 2.84402 17 - -
1309 1.38629 1.38629 1.38629 1.38629
1310 0.03651 4.02164 4.02164 1.46634 0.26236 1.09861 0.40547
1311 18 3.10676 2.60668 3.15422 0.17578 18 - -
1312 1.38629 1.38629 1.38629 1.38629
1313 0.03651 4.02164 4.02164 1.46634 0.26236 1.09861 0.40547
1314 19 2.96001 3.60594 0.11519 3.51250 19 - -
1315 1.38629 1.38629 1.38629 1.38629
1316 0.03651 4.02164 4.02164 1.46634 0.26236 1.09861 0.40547
1317 20 3.29555 0.16300 3.34900 2.54800 20 - -
1318 1.38629 1.38629 1.38629 1.38629
1319 0.03651 4.02164 4.02164 1.46634 0.26236 1.09861 0.40547
1320 21 0.13955 3.39821 2.81357 3.30158 21 - -
1321 1.38629 1.38629 1.38629 1.38629
1322 0.03651 4.02164 4.02164 1.46634 0.26236 1.09861 0.40547
1323 22 2.96001 3.60594 0.11519 3.51250 22 - -
1324 1.38629 1.38629 1.38629 1.38629
1325 0.03651 4.02164 4.02164 1.46634 0.26236 1.09861 0.40547
1326 23 3.45378 0.12777 3.50236 2.84402 23 - -
1327 1.38629 1.38629 1.38629 1.38629
1328 0.03651 4.02164 4.02164 1.46634 0.26236 1.09861 0.40547
1329 24 2.96001 3.60594 0.11519 3.51250 24 - -
1330 1.38629 1.38629 1.38629 1.38629
1331 0.03651 4.02164 4.02164 1.46634 0.26236 1.09861 0.40547
1332 25 3.10676 2.60668 3.15422 0.17578 25 - -
1333 1.38629 1.38629 1.38629 1.38629
1334 0.03651 4.02164 4.02164 1.46634 0.26236 1.09861 0.40547
1335 26 2.96001 3.60594 0.11519 3.51250 26 - -
1336 1.38629 1.38629 1.38629 1.38629
1337 0.03651 4.02164 4.02164 1.46634 0.26236 1.09861 0.40547
1338 27 3.45378 0.12777 3.50236 2.84402 27 - -
1339 1.38629 1.38629 1.38629 1.38629
1340 0.03651 4.02164 4.02164 1.46634 0.26236 1.09861 0.40547
1341 28 3.10676 2.60668 3.15422 0.17578 28 - -
1342 1.38629 1.38629 1.38629 1.38629
1343 0.03651 4.02164 4.02164 1.46634 0.26236 1.09861 0.40547
1344 29 3.45378 0.12777 3.50236 2.84402 29 - -
1345 1.38629 1.38629 1.38629 1.38629
1346 0.03651 4.02164 4.02164 1.46634 0.26236 1.09861 0.40547
1347 30 2.96001 3.60594 0.11519 3.51250 30 - -
1348 1.38629 1.38629 1.38629 1.38629
1349 0.03651 4.02164 4.02164 1.46634 0.26236 1.09861 0.40547
1350 31 2.96001 3.60594 0.11519 3.51250 31 - -
1351 1.38629 1.38629 1.38629 1.38629
1352 0.03651 4.02164 4.02164 1.46634 0.26236 1.09861 0.40547
1353 32 3.10676 2.60668 3.15422 0.17578 32 - -
1354 1.38629 1.38629 1.38629 1.38629
1355 0.03651 4.02164 4.02164 1.46634 0.26236 1.09861 0.40547
1356 33 3.10676 2.60668 3.15422 0.17578 33 - -
1357 1.38629 1.38629 1.38629 1.38629
1358 0.03651 4.02164 4.02164 1.46634 0.26236 1.09861 0.40547
1359 34 2.61246 3.43529 0.15231 3.33228 34 - -
1360 1.38629 1.38629 1.38629 1.38629
1361 0.03651 4.02164 4.02164 1.46634 0.26236 1.09861 0.40547
1362 35 0.19383 3.12524 2.69152 2.74111 35 - -
1363 1.38629 1.38629 1.38629 1.38629
1364 0.03651 4.02164 4.02164 1.46634 0.26236 1.09861 0.40547
1365 36 2.96001 3.60594 0.11519 3.51250 36 - -
1366 1.38629 1.38629 1.38629 1.38629
1367 0.03651 4.02164 4.02164 1.46634 0.26236 1.09861 0.40547
1368 37 3.10676 2.60668 3.15422 0.17578 37 - -
1369 1.38629 1.38629 1.38629 1.38629
1370 0.03651 4.02164 4.02164 1.46634 0.26236 1.09861 0.40547
1371 38 2.96001 3.60594 0.11519 3.51250 38 - -
1372 1.38629 1.38629 1.38629 1.38629
1373 0.03651 4.02164 4.02164 1.46634 0.26236 1.09861 0.40547
1374 39 3.10676 2.60668 3.15422 0.17578 39 - -
1375 1.38629 1.38629 1.38629 1.38629
1376 0.03651 4.02164 4.02164 1.46634 0.26236 1.09861 0.40547
1377 40 2.96001 3.60594 0.11519 3.51250 40 - -
1378 1.38629 1.38629 1.38629 1.38629
1379 0.03651 4.02164 4.02164 1.46634 0.26236 1.09861 0.40547
1380 41 3.45378 0.12777 3.50236 2.84402 41 - -
1381 1.38629 1.38629 1.38629 1.38629
1382 0.03651 4.02164 4.02164 1.46634 0.26236 1.09861 0.40547
1383 42 0.19602 3.19941 2.38831 3.09154 42 - -
1384 1.38629 1.38629 1.38629 1.38629
1385 0.03651 4.02164 4.02164 1.46634 0.26236 1.09861 0.40547
1386 43 3.10676 2.60668 3.15422 0.17578 43 - -
1387 1.38629 1.38629 1.38629 1.38629
1388 0.03651 4.02164 4.02164 1.46634 0.26236 1.09861 0.40547
1389 44 3.10676 2.60668 3.15422 0.17578 44 - -
1390 1.38629 1.38629 1.38629 1.38629
1391 0.03651 4.02164 4.02164 1.46634 0.26236 1.09861 0.40547
1392 45 0.13955 3.39821 2.81357 3.30158 45 - -
1393 1.38629 1.38629 1.38629 1.38629
1394 0.01842 4.00356 * 1.46634 0.26236 0.00000 *
1395 //
1396 HMMER3/b [3.0 | March 2010]
1397 NAME 2_5.8_Rhizaria_58S_start_five_long
1398 LENG 45
1399 ALPH DNA
1400 RF no
1401 CS no
1402 MAP yes
1403 DATE Fri Jan 20 14:39:29 2012
1404 NSEQ 40
1405 EFFN 3.432617
1406 CKSUM 3346258546
1407 STATS LOCAL MSV -7.6747 0.71933
1408 STATS LOCAL VITERBI -7.7146 0.71933
1409 STATS LOCAL FORWARD -4.2191 0.71933
1410 HMM A C G T
1411 m->m m->i m->d i->m i->i d->m d->d
1412 COMPO 1.21566 1.45905 1.43705 1.45500
1413 1.38629 1.38629 1.38629 1.38629
1414 0.03615 4.03116 4.03116 1.46634 0.26236 0.00000 *
1415 1 1.71916 2.27454 2.44490 0.46013 1 - -
1416 1.38629 1.38629 1.38629 1.38629
1417 0.03615 4.03116 4.03116 1.46634 0.26236 1.09861 0.40547
1418 2 3.47289 0.12556 3.52064 2.85787 2 - -
1419 1.38629 1.38629 1.38629 1.38629
1420 0.03615 4.03116 4.03116 1.46634 0.26236 1.09861 0.40547
1421 3 0.13742 3.41482 2.82432 3.31978 3 - -
1422 1.38629 1.38629 1.38629 1.38629
1423 0.03615 4.03116 4.03116 1.46634 0.26236 1.09861 0.40547
1424 4 0.31690 2.91014 1.86199 2.78440 4 - -
1425 1.38629 1.38629 1.38629 1.38629
1426 0.03615 4.03116 4.03116 1.46634 0.26236 1.09861 0.40547
1427 5 3.12363 2.61740 3.17044 0.17313 5 - -
1428 1.38629 1.38629 1.38629 1.38629
1429 0.03615 4.03116 4.03116 1.46634 0.26236 1.09861 0.40547
1430 6 3.47289 0.12556 3.52064 2.85787 6 - -
1431 1.38629 1.38629 1.38629 1.38629
1432 0.03615 4.03116 4.03116 1.46634 0.26236 1.09861 0.40547
1433 7 3.12363 2.61740 3.17044 0.17313 7 - -
1434 1.38629 1.38629 1.38629 1.38629
1435 0.03615 4.03116 4.03116 1.46634 0.26236 1.09861 0.40547
1436 8 3.12363 2.61740 3.17044 0.17313 8 - -
1437 1.38629 1.38629 1.38629 1.38629
1438 0.03615 4.03116 4.03116 1.46634 0.26236 1.09861 0.40547
1439 9 3.03573 2.40304 3.08573 0.20356 9 - -
1440 1.38629 1.38629 1.38629 1.38629
1441 0.03615 4.03116 4.03116 1.46634 0.26236 1.09861 0.40547
1442 10 2.97148 3.62270 0.11341 3.53103 10 - -
1443 1.38629 1.38629 1.38629 1.38629
1444 0.03615 4.03116 4.03116 1.46634 0.26236 1.09861 0.40547
1445 11 3.47289 0.12556 3.52064 2.85787 11 - -
1446 1.38629 1.38629 1.38629 1.38629
1447 0.03615 4.03116 4.03116 1.46634 0.26236 1.09861 0.40547
1448 12 0.13742 3.41482 2.82432 3.31978 12 - -
1449 1.38629 1.38629 1.38629 1.38629
1450 0.03615 4.03116 4.03116 1.46634 0.26236 1.09861 0.40547
1451 13 0.13742 3.41482 2.82432 3.31978 13 - -
1452 1.38629 1.38629 1.38629 1.38629
1453 0.03615 4.03116 4.03116 1.46634 0.26236 1.09861 0.40547
1454 14 3.12363 2.61740 3.17044 0.17313 14 - -
1455 1.38629 1.38629 1.38629 1.38629
1456 0.03615 4.03116 4.03116 1.46634 0.26236 1.09861 0.40547
1457 15 2.97148 3.62270 0.11341 3.53103 15 - -
1458 1.38629 1.38629 1.38629 1.38629
1459 0.03615 4.03116 4.03116 1.46634 0.26236 1.09861 0.40547
1460 16 2.97148 3.62270 0.11341 3.53103 16 - -
1461 1.38629 1.38629 1.38629 1.38629
1462 0.03615 4.03116 4.03116 1.46634 0.26236 1.09861 0.40547
1463 17 0.13742 3.41482 2.82432 3.31978 17 - -
1464 1.38629 1.38629 1.38629 1.38629
1465 0.03615 4.03116 4.03116 1.46634 0.26236 1.09861 0.40547
1466 18 3.12363 2.61740 3.17044 0.17313 18 - -
1467 1.38629 1.38629 1.38629 1.38629
1468 0.03615 4.03116 4.03116 1.46634 0.26236 1.09861 0.40547
1469 19 2.97148 3.62270 0.11341 3.53103 19 - -
1470 1.38629 1.38629 1.38629 1.38629
1471 0.03615 4.03116 4.03116 1.46634 0.26236 1.09861 0.40547
1472 20 0.13742 3.41482 2.82432 3.31978 20 - -
1473 1.38629 1.38629 1.38629 1.38629
1474 0.03615 4.03116 4.03116 1.46634 0.26236 1.09861 0.40547
1475 21 3.47289 0.12556 3.52064 2.85787 21 - -
1476 1.38629 1.38629 1.38629 1.38629
1477 0.03615 4.03116 4.03116 1.46634 0.26236 1.09861 0.40547
1478 22 3.12363 2.61740 3.17044 0.17313 22 - -
1479 1.38629 1.38629 1.38629 1.38629
1480 0.03615 4.03116 4.03116 1.46634 0.26236 1.09861 0.40547
1481 23 0.13742 3.41482 2.82432 3.31978 23 - -
1482 1.38629 1.38629 1.38629 1.38629
1483 0.03615 4.03116 4.03116 1.46634 0.26236 1.09861 0.40547
1484 24 2.97148 3.62270 0.11341 3.53103 24 - -
1485 1.38629 1.38629 1.38629 1.38629
1486 0.03615 4.03116 4.03116 1.46634 0.26236 1.09861 0.40547
1487 25 2.97148 3.62270 0.11341 3.53103 25 - -
1488 1.38629 1.38629 1.38629 1.38629
1489 0.03615 4.03116 4.03116 1.46634 0.26236 1.09861 0.40547
1490 26 3.47289 0.12556 3.52064 2.85787 26 - -
1491 1.38629 1.38629 1.38629 1.38629
1492 0.03615 4.03116 4.03116 1.46634 0.26236 1.09861 0.40547
1493 27 3.12363 2.61740 3.17044 0.17313 27 - -
1494 1.38629 1.38629 1.38629 1.38629
1495 0.03615 4.03116 4.03116 1.46634 0.26236 1.09861 0.40547
1496 28 3.47289 0.12556 3.52064 2.85787 28 - -
1497 1.38629 1.38629 1.38629 1.38629
1498 0.03615 4.03116 4.03116 1.46634 0.26236 1.09861 0.40547
1499 29 3.12363 2.61740 3.17044 0.17313 29 - -
1500 1.38629 1.38629 1.38629 1.38629
1501 0.03615 4.03116 4.03116 1.46634 0.26236 1.09861 0.40547
1502 30 3.47289 0.12556 3.52064 2.85787 30 - -
1503 1.38629 1.38629 1.38629 1.38629
1504 0.03615 4.03116 4.03116 1.46634 0.26236 1.09861 0.40547
1505 31 2.97148 3.62270 0.11341 3.53103 31 - -
1506 1.38629 1.38629 1.38629 1.38629
1507 0.03615 4.03116 4.03116 1.46634 0.26236 1.09861 0.40547
1508 32 3.47289 0.12556 3.52064 2.85787 32 - -
1509 1.38629 1.38629 1.38629 1.38629
1510 0.03615 4.03116 4.03116 1.46634 0.26236 1.09861 0.40547
1511 33 0.13742 3.41482 2.82432 3.31978 33 - -
1512 1.38629 1.38629 1.38629 1.38629
1513 0.03615 4.03116 4.03116 1.46634 0.26236 1.09861 0.40547
1514 34 0.13742 3.41482 2.82432 3.31978 34 - -
1515 1.38629 1.38629 1.38629 1.38629
1516 0.03615 4.03116 4.03116 1.46634 0.26236 1.09861 0.40547
1517 35 3.32901 0.15694 3.38130 2.58484 35 - -
1518 1.38629 1.38629 1.38629 1.38629
1519 0.03615 4.03116 4.03116 1.46634 0.26236 1.09861 0.40547
1520 36 2.97148 3.62270 0.11341 3.53103 36 - -
1521 1.38629 1.38629 1.38629 1.38629
1522 0.03615 4.03116 4.03116 1.46634 0.26236 1.09861 0.40547
1523 37 0.13742 3.41482 2.82432 3.31978 37 - -
1524 1.38629 1.38629 1.38629 1.38629
1525 0.03615 4.03116 4.03116 1.46634 0.26236 1.09861 0.40547
1526 38 3.12363 2.61740 3.17044 0.17313 38 - -
1527 1.38629 1.38629 1.38629 1.38629
1528 0.03615 4.03116 4.03116 1.46634 0.26236 1.09861 0.40547
1529 39 2.97148 3.62270 0.11341 3.53103 39 - -
1530 1.38629 1.38629 1.38629 1.38629
1531 0.03615 4.03116 4.03116 1.46634 0.26236 1.09861 0.40547
1532 40 0.13742 3.41482 2.82432 3.31978 40 - -
1533 1.38629 1.38629 1.38629 1.38629
1534 0.03615 4.03116 4.03116 1.46634 0.26236 1.09861 0.40547
1535 41 0.13742 3.41482 2.82432 3.31978 41 - -
1536 1.38629 1.38629 1.38629 1.38629
1537 0.03615 4.03116 4.03116 1.46634 0.26236 1.09861 0.40547
1538 42 2.97148 3.62270 0.11341 3.53103 42 - -
1539 1.38629 1.38629 1.38629 1.38629
1540 0.03615 4.03116 4.03116 1.46634 0.26236 1.09861 0.40547
1541 43 0.13742 3.41482 2.82432 3.31978 43 - -
1542 1.38629 1.38629 1.38629 1.38629
1543 0.03615 4.03116 4.03116 1.46634 0.26236 1.09861 0.40547
1544 44 0.13742 3.41482 2.82432 3.31978 44 - -
1545 1.38629 1.38629 1.38629 1.38629
1546 0.03615 4.03116 4.03116 1.46634 0.26236 1.09861 0.40547
1547 45 3.47289 0.12556 3.52064 2.85787 45 - -
1548 1.38629 1.38629 1.38629 1.38629
1549 0.01824 4.01325 * 1.46634 0.26236 0.00000 *
1550 //
1551 HMMER3/b [3.0 | March 2010]
1552 NAME 2_5.8_Rhizaria_58S_start_four_long
1553 LENG 45
1554 ALPH DNA
1555 RF no
1556 CS no
1557 MAP yes
1558 DATE Fri Jan 20 14:39:22 2012
1559 NSEQ 21
1560 EFFN 3.222290
1561 CKSUM 1508263825
1562 STATS LOCAL MSV -8.2708 0.71933
1563 STATS LOCAL VITERBI -7.7088 0.71933
1564 STATS LOCAL FORWARD -4.2457 0.71933
1565 HMM A C G T
1566 m->m m->i m->d i->m i->i d->m d->d
1567 COMPO 1.21645 1.46650 1.37607 1.51223
1568 1.38629 1.38629 1.38629 1.38629
1569 0.03758 3.99310 3.99310 1.46634 0.26236 0.00000 *
1570 1 0.14629 3.34758 2.78064 3.24617 1 - -
1571 1.38629 1.38629 1.38629 1.38629
1572 0.03758 3.99310 3.99310 1.46634 0.26236 1.09861 0.40547
1573 2 3.39541 0.13480 3.44645 2.80147 2 - -
1574 1.38629 1.38629 1.38629 1.38629
1575 0.03758 3.99310 3.99310 1.46634 0.26236 1.09861 0.40547
1576 3 2.92459 3.55448 0.12087 3.45573 3 - -
1577 1.38629 1.38629 1.38629 1.38629
1578 0.03758 3.99310 3.99310 1.46634 0.26236 1.09861 0.40547
1579 4 0.14629 3.34758 2.78064 3.24617 4 - -
1580 1.38629 1.38629 1.38629 1.38629
1581 0.03758 3.99310 3.99310 1.46634 0.26236 1.09861 0.40547
1582 5 3.05574 2.57421 3.10514 0.18407 5 - -
1583 1.38629 1.38629 1.38629 1.38629
1584 0.03758 3.99310 3.99310 1.46634 0.26236 1.09861 0.40547
1585 6 3.39541 0.13480 3.44645 2.80147 6 - -
1586 1.38629 1.38629 1.38629 1.38629
1587 0.03758 3.99310 3.99310 1.46634 0.26236 1.09861 0.40547
1588 7 3.05574 2.57421 3.10514 0.18407 7 - -
1589 1.38629 1.38629 1.38629 1.38629
1590 0.03758 3.99310 3.99310 1.46634 0.26236 1.09861 0.40547
1591 8 3.05574 2.57421 3.10514 0.18407 8 - -
1592 1.38629 1.38629 1.38629 1.38629
1593 0.03758 3.99310 3.99310 1.46634 0.26236 1.09861 0.40547
1594 9 3.05574 2.57421 3.10514 0.18407 9 - -
1595 1.38629 1.38629 1.38629 1.38629
1596 0.03758 3.99310 3.99310 1.46634 0.26236 1.09861 0.40547
1597 10 2.92459 3.55448 0.12087 3.45573 10 - -
1598 1.38629 1.38629 1.38629 1.38629
1599 0.03758 3.99310 3.99310 1.46634 0.26236 1.09861 0.40547
1600 11 3.39541 0.13480 3.44645 2.80147 11 - -
1601 1.38629 1.38629 1.38629 1.38629
1602 0.03758 3.99310 3.99310 1.46634 0.26236 1.09861 0.40547
1603 12 0.14629 3.34758 2.78064 3.24617 12 - -
1604 1.38629 1.38629 1.38629 1.38629
1605 0.03758 3.99310 3.99310 1.46634 0.26236 1.09861 0.40547
1606 13 0.14629 3.34758 2.78064 3.24617 13 - -
1607 1.38629 1.38629 1.38629 1.38629
1608 0.03758 3.99310 3.99310 1.46634 0.26236 1.09861 0.40547
1609 14 3.05574 2.57421 3.10514 0.18407 14 - -
1610 1.38629 1.38629 1.38629 1.38629
1611 0.03758 3.99310 3.99310 1.46634 0.26236 1.09861 0.40547
1612 15 2.92459 3.55448 0.12087 3.45573 15 - -
1613 1.38629 1.38629 1.38629 1.38629
1614 0.03758 3.99310 3.99310 1.46634 0.26236 1.09861 0.40547
1615 16 2.92459 3.55448 0.12087 3.45573 16 - -
1616 1.38629 1.38629 1.38629 1.38629
1617 0.03758 3.99310 3.99310 1.46634 0.26236 1.09861 0.40547
1618 17 0.14629 3.34758 2.78064 3.24617 17 - -
1619 1.38629 1.38629 1.38629 1.38629
1620 0.03758 3.99310 3.99310 1.46634 0.26236 1.09861 0.40547
1621 18 3.05574 2.57421 3.10514 0.18407 18 - -
1622 1.38629 1.38629 1.38629 1.38629
1623 0.03758 3.99310 3.99310 1.46634 0.26236 1.09861 0.40547
1624 19 2.92459 3.55448 0.12087 3.45573 19 - -
1625 1.38629 1.38629 1.38629 1.38629
1626 0.03758 3.99310 3.99310 1.46634 0.26236 1.09861 0.40547
1627 20 0.14629 3.34758 2.78064 3.24617 20 - -
1628 1.38629 1.38629 1.38629 1.38629
1629 0.03758 3.99310 3.99310 1.46634 0.26236 1.09861 0.40547
1630 21 3.39541 0.13480 3.44645 2.80147 21 - -
1631 1.38629 1.38629 1.38629 1.38629
1632 0.03758 3.99310 3.99310 1.46634 0.26236 1.09861 0.40547
1633 22 3.05574 2.57421 3.10514 0.18407 22 - -
1634 1.38629 1.38629 1.38629 1.38629
1635 0.03758 3.99310 3.99310 1.46634 0.26236 1.09861 0.40547
1636 23 0.14629 3.34758 2.78064 3.24617 23 - -
1637 1.38629 1.38629 1.38629 1.38629
1638 0.03758 3.99310 3.99310 1.46634 0.26236 1.09861 0.40547
1639 24 2.92459 3.55448 0.12087 3.45573 24 - -
1640 1.38629 1.38629 1.38629 1.38629
1641 0.03758 3.99310 3.99310 1.46634 0.26236 1.09861 0.40547
1642 25 2.92459 3.55448 0.12087 3.45573 25 - -
1643 1.38629 1.38629 1.38629 1.38629
1644 0.03758 3.99310 3.99310 1.46634 0.26236 1.09861 0.40547
1645 26 3.39541 0.13480 3.44645 2.80147 26 - -
1646 1.38629 1.38629 1.38629 1.38629
1647 0.03758 3.99310 3.99310 1.46634 0.26236 1.09861 0.40547
1648 27 3.05574 2.57421 3.10514 0.18407 27 - -
1649 1.38629 1.38629 1.38629 1.38629
1650 0.03758 3.99310 3.99310 1.46634 0.26236 1.09861 0.40547
1651 28 3.39541 0.13480 3.44645 2.80147 28 - -
1652 1.38629 1.38629 1.38629 1.38629
1653 0.03758 3.99310 3.99310 1.46634 0.26236 1.09861 0.40547
1654 29 3.05574 2.57421 3.10514 0.18407 29 - -
1655 1.38629 1.38629 1.38629 1.38629
1656 0.03758 3.99310 3.99310 1.46634 0.26236 1.09861 0.40547
1657 30 3.39541 0.13480 3.44645 2.80147 30 - -
1658 1.38629 1.38629 1.38629 1.38629
1659 0.03758 3.99310 3.99310 1.46634 0.26236 1.09861 0.40547
1660 31 2.92459 3.55448 0.12087 3.45573 31 - -
1661 1.38629 1.38629 1.38629 1.38629
1662 0.03758 3.99310 3.99310 1.46634 0.26236 1.09861 0.40547
1663 32 3.39541 0.13480 3.44645 2.80147 32 - -
1664 1.38629 1.38629 1.38629 1.38629
1665 0.03758 3.99310 3.99310 1.46634 0.26236 1.09861 0.40547
1666 33 0.14629 3.34758 2.78064 3.24617 33 - -
1667 1.38629 1.38629 1.38629 1.38629
1668 0.03758 3.99310 3.99310 1.46634 0.26236 1.09861 0.40547
1669 34 0.14629 3.34758 2.78064 3.24617 34 - -
1670 1.38629 1.38629 1.38629 1.38629
1671 0.03758 3.99310 3.99310 1.46634 0.26236 1.09861 0.40547
1672 35 3.39541 0.13480 3.44645 2.80147 35 - -
1673 1.38629 1.38629 1.38629 1.38629
1674 0.03758 3.99310 3.99310 1.46634 0.26236 1.09861 0.40547
1675 36 2.92459 3.55448 0.12087 3.45573 36 - -
1676 1.38629 1.38629 1.38629 1.38629
1677 0.03758 3.99310 3.99310 1.46634 0.26236 1.09861 0.40547
1678 37 0.14629 3.34758 2.78064 3.24617 37 - -
1679 1.38629 1.38629 1.38629 1.38629
1680 0.03758 3.99310 3.99310 1.46634 0.26236 1.09861 0.40547
1681 38 3.05574 2.57421 3.10514 0.18407 38 - -
1682 1.38629 1.38629 1.38629 1.38629
1683 0.03758 3.99310 3.99310 1.46634 0.26236 1.09861 0.40547
1684 39 2.92459 3.55448 0.12087 3.45573 39 - -
1685 1.38629 1.38629 1.38629 1.38629
1686 0.03758 3.99310 3.99310 1.46634 0.26236 1.09861 0.40547
1687 40 0.14629 3.34758 2.78064 3.24617 40 - -
1688 1.38629 1.38629 1.38629 1.38629
1689 0.03758 3.99310 3.99310 1.46634 0.26236 1.09861 0.40547
1690 41 0.14629 3.34758 2.78064 3.24617 41 - -
1691 1.38629 1.38629 1.38629 1.38629
1692 0.03758 3.99310 3.99310 1.46634 0.26236 1.09861 0.40547
1693 42 2.92459 3.55448 0.12087 3.45573 42 - -
1694 1.38629 1.38629 1.38629 1.38629
1695 0.03758 3.99310 3.99310 1.46634 0.26236 1.09861 0.40547
1696 43 0.14629 3.34758 2.78064 3.24617 43 - -
1697 1.38629 1.38629 1.38629 1.38629
1698 0.03758 3.99310 3.99310 1.46634 0.26236 1.09861 0.40547
1699 44 0.14629 3.34758 2.78064 3.24617 44 - -
1700 1.38629 1.38629 1.38629 1.38629
1701 0.03758 3.99310 3.99310 1.46634 0.26236 1.09861 0.40547
1702 45 3.39541 0.13480 3.44645 2.80147 45 - -
1703 1.38629 1.38629 1.38629 1.38629
1704 0.01897 3.97449 * 1.46634 0.26236 0.00000 *
1705 //
1706 HMMER3/b [3.0 | March 2010]
1707 NAME 2_5.8_Rhizaria_58S_start_one_long
1708 LENG 45
1709 ALPH DNA
1710 RF no
1711 CS no
1712 MAP yes
1713 DATE Fri Jan 20 14:39:00 2012
1714 NSEQ 12
1715 EFFN 3.301758
1716 CKSUM 1440402788
1717 STATS LOCAL MSV -8.1666 0.71931
1718 STATS LOCAL VITERBI -7.6903 0.71931
1719 STATS LOCAL FORWARD -3.9835 0.71931
1720 HMM A C G T
1721 m->m m->i m->d i->m i->i d->m d->d
1722 COMPO 1.33353 1.43330 1.24691 1.55806
1723 1.38629 1.38629 1.38629 1.38629
1724 0.03703 4.00765 4.00765 1.46634 0.26236 0.00000 *
1725 1 2.41922 0.77428 2.49183 1.00180 1 - -
1726 1.38629 1.38629 1.38629 1.38629
1727 0.03703 4.00765 4.00765 1.46634 0.26236 1.09861 0.40547
1728 2 2.94283 3.58093 0.11791 3.48489 2 - -
1729 1.38629 1.38629 1.38629 1.38629
1730 0.03703 4.00765 4.00765 1.46634 0.26236 1.09861 0.40547
1731 3 0.14279 3.37354 2.79756 3.27457 3 - -
1732 1.38629 1.38629 1.38629 1.38629
1733 0.03703 4.00765 4.00765 1.46634 0.26236 1.09861 0.40547
1734 4 3.42536 0.13114 3.47515 2.82335 4 - -
1735 1.38629 1.38629 1.38629 1.38629
1736 0.03703 4.00765 4.00765 1.46634 0.26236 1.09861 0.40547
1737 5 3.42536 0.13114 3.47515 2.82335 5 - -
1738 1.38629 1.38629 1.38629 1.38629
1739 0.03703 4.00765 4.00765 1.46634 0.26236 1.09861 0.40547
1740 6 3.42536 0.13114 3.47515 2.82335 6 - -
1741 1.38629 1.38629 1.38629 1.38629
1742 0.03703 4.00765 4.00765 1.46634 0.26236 1.09861 0.40547
1743 7 3.08183 2.59083 3.13024 0.17977 7 - -
1744 1.38629 1.38629 1.38629 1.38629
1745 0.03703 4.00765 4.00765 1.46634 0.26236 1.09861 0.40547
1746 8 3.08183 2.59083 3.13024 0.17977 8 - -
1747 1.38629 1.38629 1.38629 1.38629
1748 0.03703 4.00765 4.00765 1.46634 0.26236 1.09861 0.40547
1749 9 0.14279 3.37354 2.79756 3.27457 9 - -
1750 1.38629 1.38629 1.38629 1.38629
1751 0.03703 4.00765 4.00765 1.46634 0.26236 1.09861 0.40547
1752 10 2.94283 3.58093 0.11791 3.48489 10 - -
1753 1.38629 1.38629 1.38629 1.38629
1754 0.03703 4.00765 4.00765 1.46634 0.26236 1.09861 0.40547
1755 11 3.42536 0.13114 3.47515 2.82335 11 - -
1756 1.38629 1.38629 1.38629 1.38629
1757 0.03703 4.00765 4.00765 1.46634 0.26236 1.09861 0.40547
1758 12 2.94283 3.58093 0.11791 3.48489 12 - -
1759 1.38629 1.38629 1.38629 1.38629
1760 0.03703 4.00765 4.00765 1.46634 0.26236 1.09861 0.40547
1761 13 0.14279 3.37354 2.79756 3.27457 13 - -
1762 1.38629 1.38629 1.38629 1.38629
1763 0.03703 4.00765 4.00765 1.46634 0.26236 1.09861 0.40547
1764 14 0.14279 3.37354 2.79756 3.27457 14 - -
1765 1.38629 1.38629 1.38629 1.38629
1766 0.03703 4.00765 4.00765 1.46634 0.26236 1.09861 0.40547
1767 15 2.94283 3.58093 0.11791 3.48489 15 - -
1768 1.38629 1.38629 1.38629 1.38629
1769 0.03703 4.00765 4.00765 1.46634 0.26236 1.09861 0.40547
1770 16 2.94283 3.58093 0.11791 3.48489 16 - -
1771 1.38629 1.38629 1.38629 1.38629
1772 0.03703 4.00765 4.00765 1.46634 0.26236 1.09861 0.40547
1773 17 0.14279 3.37354 2.79756 3.27457 17 - -
1774 1.38629 1.38629 1.38629 1.38629
1775 0.03703 4.00765 4.00765 1.46634 0.26236 1.09861 0.40547
1776 18 3.08183 2.59083 3.13024 0.17977 18 - -
1777 1.38629 1.38629 1.38629 1.38629
1778 0.03703 4.00765 4.00765 1.46634 0.26236 1.09861 0.40547
1779 19 2.94283 3.58093 0.11791 3.48489 19 - -
1780 1.38629 1.38629 1.38629 1.38629
1781 0.03703 4.00765 4.00765 1.46634 0.26236 1.09861 0.40547
1782 20 3.08183 2.59083 3.13024 0.17977 20 - -
1783 1.38629 1.38629 1.38629 1.38629
1784 0.03703 4.00765 4.00765 1.46634 0.26236 1.09861 0.40547
1785 21 3.42536 0.13114 3.47515 2.82335 21 - -
1786 1.38629 1.38629 1.38629 1.38629
1787 0.03703 4.00765 4.00765 1.46634 0.26236 1.09861 0.40547
1788 22 3.08183 2.59083 3.13024 0.17977 22 - -
1789 1.38629 1.38629 1.38629 1.38629
1790 0.03703 4.00765 4.00765 1.46634 0.26236 1.09861 0.40547
1791 23 3.08183 2.59083 3.13024 0.17977 23 - -
1792 1.38629 1.38629 1.38629 1.38629
1793 0.03703 4.00765 4.00765 1.46634 0.26236 1.09861 0.40547
1794 24 2.94283 3.58093 0.11791 3.48489 24 - -
1795 1.38629 1.38629 1.38629 1.38629
1796 0.03703 4.00765 4.00765 1.46634 0.26236 1.09861 0.40547
1797 25 2.94283 3.58093 0.11791 3.48489 25 - -
1798 1.38629 1.38629 1.38629 1.38629
1799 0.03703 4.00765 4.00765 1.46634 0.26236 1.09861 0.40547
1800 26 3.08183 2.59083 3.13024 0.17977 26 - -
1801 1.38629 1.38629 1.38629 1.38629
1802 0.03703 4.00765 4.00765 1.46634 0.26236 1.09861 0.40547
1803 27 3.08183 2.59083 3.13024 0.17977 27 - -
1804 1.38629 1.38629 1.38629 1.38629
1805 0.03703 4.00765 4.00765 1.46634 0.26236 1.09861 0.40547
1806 28 3.42536 0.13114 3.47515 2.82335 28 - -
1807 1.38629 1.38629 1.38629 1.38629
1808 0.03703 4.00765 4.00765 1.46634 0.26236 1.09861 0.40547
1809 29 3.42536 0.13114 3.47515 2.82335 29 - -
1810 1.38629 1.38629 1.38629 1.38629
1811 0.03703 4.00765 4.00765 1.46634 0.26236 1.09861 0.40547
1812 30 2.94283 3.58093 0.11791 3.48489 30 - -
1813 1.38629 1.38629 1.38629 1.38629
1814 0.03703 4.00765 4.00765 1.46634 0.26236 1.09861 0.40547
1815 31 2.94283 3.58093 0.11791 3.48489 31 - -
1816 1.38629 1.38629 1.38629 1.38629
1817 0.03703 4.00765 4.00765 1.46634 0.26236 1.09861 0.40547
1818 32 3.42536 0.13114 3.47515 2.82335 32 - -
1819 1.38629 1.38629 1.38629 1.38629
1820 0.03703 4.00765 4.00765 1.46634 0.26236 1.09861 0.40547
1821 33 0.14279 3.37354 2.79756 3.27457 33 - -
1822 1.38629 1.38629 1.38629 1.38629
1823 0.03703 4.00765 4.00765 1.46634 0.26236 1.09861 0.40547
1824 34 0.14279 3.37354 2.79756 3.27457 34 - -
1825 1.38629 1.38629 1.38629 1.38629
1826 0.03703 4.00765 4.00765 1.46634 0.26236 1.09861 0.40547
1827 35 3.42536 0.13114 3.47515 2.82335 35 - -
1828 1.38629 1.38629 1.38629 1.38629
1829 0.03703 4.00765 4.00765 1.46634 0.26236 1.09861 0.40547
1830 36 2.94283 3.58093 0.11791 3.48489 36 - -
1831 1.38629 1.38629 1.38629 1.38629
1832 0.03703 4.00765 4.00765 1.46634 0.26236 1.09861 0.40547
1833 37 0.14279 3.37354 2.79756 3.27457 37 - -
1834 1.38629 1.38629 1.38629 1.38629
1835 0.03703 4.00765 4.00765 1.46634 0.26236 1.09861 0.40547
1836 38 3.08183 2.59083 3.13024 0.17977 38 - -
1837 1.38629 1.38629 1.38629 1.38629
1838 0.03703 4.00765 4.00765 1.46634 0.26236 1.09861 0.40547
1839 39 2.94283 3.58093 0.11791 3.48489 39 - -
1840 1.38629 1.38629 1.38629 1.38629
1841 0.03703 4.00765 4.00765 1.46634 0.26236 1.09861 0.40547
1842 40 0.14279 3.37354 2.79756 3.27457 40 - -
1843 1.38629 1.38629 1.38629 1.38629
1844 0.03703 4.00765 4.00765 1.46634 0.26236 1.09861 0.40547
1845 41 0.14279 3.37354 2.79756 3.27457 41 - -
1846 1.38629 1.38629 1.38629 1.38629
1847 0.03703 4.00765 4.00765 1.46634 0.26236 1.09861 0.40547
1848 42 2.94283 3.58093 0.11791 3.48489 42 - -
1849 1.38629 1.38629 1.38629 1.38629
1850 0.03703 4.00765 4.00765 1.46634 0.26236 1.09861 0.40547
1851 43 0.14279 3.37354 2.79756 3.27457 43 - -
1852 1.38629 1.38629 1.38629 1.38629
1853 0.03703 4.00765 4.00765 1.46634 0.26236 1.09861 0.40547
1854 44 0.14279 3.37354 2.79756 3.27457 44 - -
1855 1.38629 1.38629 1.38629 1.38629
1856 0.03703 4.00765 4.00765 1.46634 0.26236 1.09861 0.40547
1857 45 3.42536 0.13114 3.47515 2.82335 45 - -
1858 1.38629 1.38629 1.38629 1.38629
1859 0.01869 3.98931 * 1.46634 0.26236 0.00000 *
1860 //
1861 HMMER3/b [3.0 | March 2010]
1862 NAME 2_5.8_Rhizaria_58S_start_seven_long
1863 LENG 45
1864 ALPH DNA
1865 RF no
1866 CS no
1867 MAP yes
1868 DATE Fri Jan 20 14:39:42 2012
1869 NSEQ 2
1870 EFFN 2.000000
1871 CKSUM 3286888011
1872 STATS LOCAL MSV -7.5161 0.72833
1873 STATS LOCAL VITERBI -8.2412 0.72833
1874 STATS LOCAL FORWARD -3.6122 0.72833
1875 HMM A C G T
1876 m->m m->i m->d i->m i->i d->m d->d
1877 COMPO 1.33870 1.58592 1.37006 1.27668
1878 1.38629 1.38629 1.38629 1.38629
1879 0.04879 3.73767 3.73767 1.46634 0.26236 0.00000 *
1880 1 2.57915 2.25909 2.64442 0.28946 1 - -
1881 1.38629 1.38629 1.38629 1.38629
1882 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
1883 2 2.57915 2.25909 2.64442 0.28946 2 - -
1884 1.38629 1.38629 1.38629 1.38629
1885 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
1886 3 0.23862 2.84929 2.43386 2.70756 3 - -
1887 1.38629 1.38629 1.38629 1.38629
1888 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
1889 4 2.53331 3.02441 0.20344 2.88069 4 - -
1890 1.38629 1.38629 1.38629 1.38629
1891 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
1892 5 2.57915 2.25909 2.64442 0.28946 5 - -
1893 1.38629 1.38629 1.38629 1.38629
1894 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
1895 6 2.57915 2.25909 2.64442 0.28946 6 - -
1896 1.38629 1.38629 1.38629 1.38629
1897 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
1898 7 2.81865 0.23582 2.88868 2.35662 7 - -
1899 1.38629 1.38629 1.38629 1.38629
1900 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
1901 8 2.57915 2.25909 2.64442 0.28946 8 - -
1902 1.38629 1.38629 1.38629 1.38629
1903 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
1904 9 0.23862 2.84929 2.43386 2.70756 9 - -
1905 1.38629 1.38629 1.38629 1.38629
1906 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
1907 10 0.23862 2.84929 2.43386 2.70756 10 - -
1908 1.38629 1.38629 1.38629 1.38629
1909 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
1910 11 2.57915 2.25909 2.64442 0.28946 11 - -
1911 1.38629 1.38629 1.38629 1.38629
1912 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
1913 12 2.53331 3.02441 0.20344 2.88069 12 - -
1914 1.38629 1.38629 1.38629 1.38629
1915 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
1916 13 0.23862 2.84929 2.43386 2.70756 13 - -
1917 1.38629 1.38629 1.38629 1.38629
1918 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
1919 14 2.81865 0.23582 2.88868 2.35662 14 - -
1920 1.38629 1.38629 1.38629 1.38629
1921 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
1922 15 2.53331 3.02441 0.20344 2.88069 15 - -
1923 1.38629 1.38629 1.38629 1.38629
1924 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
1925 16 2.53331 3.02441 0.20344 2.88069 16 - -
1926 1.38629 1.38629 1.38629 1.38629
1927 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
1928 17 0.23862 2.84929 2.43386 2.70756 17 - -
1929 1.38629 1.38629 1.38629 1.38629
1930 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
1931 18 2.57915 2.25909 2.64442 0.28946 18 - -
1932 1.38629 1.38629 1.38629 1.38629
1933 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
1934 19 2.53331 3.02441 0.20344 2.88069 19 - -
1935 1.38629 1.38629 1.38629 1.38629
1936 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
1937 20 2.57915 2.25909 2.64442 0.28946 20 - -
1938 1.38629 1.38629 1.38629 1.38629
1939 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
1940 21 2.81865 0.23582 2.88868 2.35662 21 - -
1941 1.38629 1.38629 1.38629 1.38629
1942 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
1943 22 2.57915 2.25909 2.64442 0.28946 22 - -
1944 1.38629 1.38629 1.38629 1.38629
1945 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
1946 23 0.23862 2.84929 2.43386 2.70756 23 - -
1947 1.38629 1.38629 1.38629 1.38629
1948 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
1949 24 2.53331 3.02441 0.20344 2.88069 24 - -
1950 1.38629 1.38629 1.38629 1.38629
1951 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
1952 25 2.53331 3.02441 0.20344 2.88069 25 - -
1953 1.38629 1.38629 1.38629 1.38629
1954 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
1955 26 2.81865 0.23582 2.88868 2.35662 26 - -
1956 1.38629 1.38629 1.38629 1.38629
1957 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
1958 27 2.57915 2.25909 2.64442 0.28946 27 - -
1959 1.38629 1.38629 1.38629 1.38629
1960 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
1961 28 2.81865 0.23582 2.88868 2.35662 28 - -
1962 1.38629 1.38629 1.38629 1.38629
1963 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
1964 29 2.81865 0.23582 2.88868 2.35662 29 - -
1965 1.38629 1.38629 1.38629 1.38629
1966 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
1967 30 2.57915 2.25909 2.64442 0.28946 30 - -
1968 1.38629 1.38629 1.38629 1.38629
1969 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
1970 31 2.53331 3.02441 0.20344 2.88069 31 - -
1971 1.38629 1.38629 1.38629 1.38629
1972 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
1973 32 2.57915 2.25909 2.64442 0.28946 32 - -
1974 1.38629 1.38629 1.38629 1.38629
1975 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
1976 33 0.23862 2.84929 2.43386 2.70756 33 - -
1977 1.38629 1.38629 1.38629 1.38629
1978 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
1979 34 2.57915 2.25909 2.64442 0.28946 34 - -
1980 1.38629 1.38629 1.38629 1.38629
1981 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
1982 35 2.81865 0.23582 2.88868 2.35662 35 - -
1983 1.38629 1.38629 1.38629 1.38629
1984 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
1985 36 2.53331 3.02441 0.20344 2.88069 36 - -
1986 1.38629 1.38629 1.38629 1.38629
1987 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
1988 37 0.23862 2.84929 2.43386 2.70756 37 - -
1989 1.38629 1.38629 1.38629 1.38629
1990 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
1991 38 2.57915 2.25909 2.64442 0.28946 38 - -
1992 1.38629 1.38629 1.38629 1.38629
1993 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
1994 39 2.53331 3.02441 0.20344 2.88069 39 - -
1995 1.38629 1.38629 1.38629 1.38629
1996 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
1997 40 0.23862 2.84929 2.43386 2.70756 40 - -
1998 1.38629 1.38629 1.38629 1.38629
1999 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
2000 41 0.23862 2.84929 2.43386 2.70756 41 - -
2001 1.38629 1.38629 1.38629 1.38629
2002 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
2003 42 2.53331 3.02441 0.20344 2.88069 42 - -
2004 1.38629 1.38629 1.38629 1.38629
2005 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
2006 43 0.23862 2.84929 2.43386 2.70756 43 - -
2007 1.38629 1.38629 1.38629 1.38629
2008 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
2009 44 0.23862 2.84929 2.43386 2.70756 44 - -
2010 1.38629 1.38629 1.38629 1.38629
2011 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
2012 45 2.81865 0.23582 2.88868 2.35662 45 - -
2013 1.38629 1.38629 1.38629 1.38629
2014 0.02469 3.71357 * 1.46634 0.26236 0.00000 *
2015 //
2016 HMMER3/b [3.0 | March 2010]
2017 NAME 2_5.8_Rhizaria_58S_start_six_long
2018 LENG 45
2019 ALPH DNA
2020 RF no
2021 CS no
2022 MAP yes
2023 DATE Fri Jan 20 14:39:35 2012
2024 NSEQ 6
2025 EFFN 3.348633
2026 CKSUM 2591723296
2027 STATS LOCAL MSV -8.3005 0.71933
2028 STATS LOCAL VITERBI -7.5976 0.71933
2029 STATS LOCAL FORWARD -4.2781 0.71933
2030 HMM A C G T
2031 m->m m->i m->d i->m i->i d->m d->d
2032 COMPO 1.36916 1.46090 1.28717 1.43716
2033 1.38629 1.38629 1.38629 1.38629
2034 0.03671 4.01614 4.01614 1.46634 0.26236 0.00000 *
2035 1 0.14081 3.38854 2.80730 3.29098 1 - -
2036 1.38629 1.38629 1.38629 1.38629
2037 0.03671 4.01614 4.01614 1.46634 0.26236 1.09861 0.40547
2038 2 0.14081 3.38854 2.80730 3.29098 2 - -
2039 1.38629 1.38629 1.38629 1.38629
2040 0.03671 4.01614 4.01614 1.46634 0.26236 1.09861 0.40547
2041 3 0.14081 3.38854 2.80730 3.29098 3 - -
2042 1.38629 1.38629 1.38629 1.38629
2043 0.03671 4.01614 4.01614 1.46634 0.26236 1.09861 0.40547
2044 4 2.95329 3.59614 0.11625 3.50169 4 - -
2045 1.38629 1.38629 1.38629 1.38629
2046 0.03671 4.01614 4.01614 1.46634 0.26236 1.09861 0.40547
2047 5 3.44264 0.12908 3.49169 2.83593 5 - -
2048 1.38629 1.38629 1.38629 1.38629
2049 0.03671 4.01614 4.01614 1.46634 0.26236 1.09861 0.40547
2050 6 3.44264 0.12908 3.49169 2.83593 6 - -
2051 1.38629 1.38629 1.38629 1.38629
2052 0.03671 4.01614 4.01614 1.46634 0.26236 1.09861 0.40547
2053 7 3.09697 2.60046 3.14480 0.17734 7 - -
2054 1.38629 1.38629 1.38629 1.38629
2055 0.03671 4.01614 4.01614 1.46634 0.26236 1.09861 0.40547
2056 8 3.09697 2.60046 3.14480 0.17734 8 - -
2057 1.38629 1.38629 1.38629 1.38629
2058 0.03671 4.01614 4.01614 1.46634 0.26236 1.09861 0.40547
2059 9 2.95329 3.59614 0.11625 3.50169 9 - -
2060 1.38629 1.38629 1.38629 1.38629
2061 0.03671 4.01614 4.01614 1.46634 0.26236 1.09861 0.40547
2062 10 3.44264 0.12908 3.49169 2.83593 10 - -
2063 1.38629 1.38629 1.38629 1.38629
2064 0.03671 4.01614 4.01614 1.46634 0.26236 1.09861 0.40547
2065 11 3.09697 2.60046 3.14480 0.17734 11 - -
2066 1.38629 1.38629 1.38629 1.38629
2067 0.03671 4.01614 4.01614 1.46634 0.26236 1.09861 0.40547
2068 12 2.95329 3.59614 0.11625 3.50169 12 - -
2069 1.38629 1.38629 1.38629 1.38629
2070 0.03671 4.01614 4.01614 1.46634 0.26236 1.09861 0.40547
2071 13 0.14081 3.38854 2.80730 3.29098 13 - -
2072 1.38629 1.38629 1.38629 1.38629
2073 0.03671 4.01614 4.01614 1.46634 0.26236 1.09861 0.40547
2074 14 3.44264 0.12908 3.49169 2.83593 14 - -
2075 1.38629 1.38629 1.38629 1.38629
2076 0.03671 4.01614 4.01614 1.46634 0.26236 1.09861 0.40547
2077 15 2.95329 3.59614 0.11625 3.50169 15 - -
2078 1.38629 1.38629 1.38629 1.38629
2079 0.03671 4.01614 4.01614 1.46634 0.26236 1.09861 0.40547
2080 16 2.95329 3.59614 0.11625 3.50169 16 - -
2081 1.38629 1.38629 1.38629 1.38629
2082 0.03671 4.01614 4.01614 1.46634 0.26236 1.09861 0.40547
2083 17 0.14081 3.38854 2.80730 3.29098 17 - -
2084 1.38629 1.38629 1.38629 1.38629
2085 0.03671 4.01614 4.01614 1.46634 0.26236 1.09861 0.40547
2086 18 3.09697 2.60046 3.14480 0.17734 18 - -
2087 1.38629 1.38629 1.38629 1.38629
2088 0.03671 4.01614 4.01614 1.46634 0.26236 1.09861 0.40547
2089 19 2.95329 3.59614 0.11625 3.50169 19 - -
2090 1.38629 1.38629 1.38629 1.38629
2091 0.03671 4.01614 4.01614 1.46634 0.26236 1.09861 0.40547
2092 20 3.09697 2.60046 3.14480 0.17734 20 - -
2093 1.38629 1.38629 1.38629 1.38629
2094 0.03671 4.01614 4.01614 1.46634 0.26236 1.09861 0.40547
2095 21 3.44264 0.12908 3.49169 2.83593 21 - -
2096 1.38629 1.38629 1.38629 1.38629
2097 0.03671 4.01614 4.01614 1.46634 0.26236 1.09861 0.40547
2098 22 3.09697 2.60046 3.14480 0.17734 22 - -
2099 1.38629 1.38629 1.38629 1.38629
2100 0.03671 4.01614 4.01614 1.46634 0.26236 1.09861 0.40547
2101 23 0.14081 3.38854 2.80730 3.29098 23 - -
2102 1.38629 1.38629 1.38629 1.38629
2103 0.03671 4.01614 4.01614 1.46634 0.26236 1.09861 0.40547
2104 24 2.95329 3.59614 0.11625 3.50169 24 - -
2105 1.38629 1.38629 1.38629 1.38629
2106 0.03671 4.01614 4.01614 1.46634 0.26236 1.09861 0.40547
2107 25 2.95329 3.59614 0.11625 3.50169 25 - -
2108 1.38629 1.38629 1.38629 1.38629
2109 0.03671 4.01614 4.01614 1.46634 0.26236 1.09861 0.40547
2110 26 3.44264 0.12908 3.49169 2.83593 26 - -
2111 1.38629 1.38629 1.38629 1.38629
2112 0.03671 4.01614 4.01614 1.46634 0.26236 1.09861 0.40547
2113 27 3.09697 2.60046 3.14480 0.17734 27 - -
2114 1.38629 1.38629 1.38629 1.38629
2115 0.03671 4.01614 4.01614 1.46634 0.26236 1.09861 0.40547
2116 28 3.44264 0.12908 3.49169 2.83593 28 - -
2117 1.38629 1.38629 1.38629 1.38629
2118 0.03671 4.01614 4.01614 1.46634 0.26236 1.09861 0.40547
2119 29 3.09697 2.60046 3.14480 0.17734 29 - -
2120 1.38629 1.38629 1.38629 1.38629
2121 0.03671 4.01614 4.01614 1.46634 0.26236 1.09861 0.40547
2122 30 3.09697 2.60046 3.14480 0.17734 30 - -
2123 1.38629 1.38629 1.38629 1.38629
2124 0.03671 4.01614 4.01614 1.46634 0.26236 1.09861 0.40547
2125 31 2.95329 3.59614 0.11625 3.50169 31 - -
2126 1.38629 1.38629 1.38629 1.38629
2127 0.03671 4.01614 4.01614 1.46634 0.26236 1.09861 0.40547
2128 32 3.44264 0.12908 3.49169 2.83593 32 - -
2129 1.38629 1.38629 1.38629 1.38629
2130 0.03671 4.01614 4.01614 1.46634 0.26236 1.09861 0.40547
2131 33 0.86047 2.51955 0.90766 2.37434 33 - -
2132 1.38629 1.38629 1.38629 1.38629
2133 0.03671 4.01614 4.01614 1.46634 0.26236 1.09861 0.40547
2134 34 3.09697 2.60046 3.14480 0.17734 34 - -
2135 1.38629 1.38629 1.38629 1.38629
2136 0.03671 4.01614 4.01614 1.46634 0.26236 1.09861 0.40547
2137 35 3.44264 0.12908 3.49169 2.83593 35 - -
2138 1.38629 1.38629 1.38629 1.38629
2139 0.03671 4.01614 4.01614 1.46634 0.26236 1.09861 0.40547
2140 36 2.95329 3.59614 0.11625 3.50169 36 - -
2141 1.38629 1.38629 1.38629 1.38629
2142 0.03671 4.01614 4.01614 1.46634 0.26236 1.09861 0.40547
2143 37 0.14081 3.38854 2.80730 3.29098 37 - -
2144 1.38629 1.38629 1.38629 1.38629
2145 0.03671 4.01614 4.01614 1.46634 0.26236 1.09861 0.40547
2146 38 3.09697 2.60046 3.14480 0.17734 38 - -
2147 1.38629 1.38629 1.38629 1.38629
2148 0.03671 4.01614 4.01614 1.46634 0.26236 1.09861 0.40547
2149 39 2.95329 3.59614 0.11625 3.50169 39 - -
2150 1.38629 1.38629 1.38629 1.38629
2151 0.03671 4.01614 4.01614 1.46634 0.26236 1.09861 0.40547
2152 40 0.14081 3.38854 2.80730 3.29098 40 - -
2153 1.38629 1.38629 1.38629 1.38629
2154 0.03671 4.01614 4.01614 1.46634 0.26236 1.09861 0.40547
2155 41 0.14081 3.38854 2.80730 3.29098 41 - -
2156 1.38629 1.38629 1.38629 1.38629
2157 0.03671 4.01614 4.01614 1.46634 0.26236 1.09861 0.40547
2158 42 2.95329 3.59614 0.11625 3.50169 42 - -
2159 1.38629 1.38629 1.38629 1.38629
2160 0.03671 4.01614 4.01614 1.46634 0.26236 1.09861 0.40547
2161 43 0.14081 3.38854 2.80730 3.29098 43 - -
2162 1.38629 1.38629 1.38629 1.38629
2163 0.03671 4.01614 4.01614 1.46634 0.26236 1.09861 0.40547
2164 44 0.14081 3.38854 2.80730 3.29098 44 - -
2165 1.38629 1.38629 1.38629 1.38629
2166 0.03671 4.01614 4.01614 1.46634 0.26236 1.09861 0.40547
2167 45 3.44264 0.12908 3.49169 2.83593 45 - -
2168 1.38629 1.38629 1.38629 1.38629
2169 0.01852 3.99795 * 1.46634 0.26236 0.00000 *
2170 //
2171 HMMER3/b [3.0 | March 2010]
2172 NAME 2_5.8_Rhizaria_58S_start_three_long
2173 LENG 45
2174 ALPH DNA
2175 RF no
2176 CS no
2177 MAP yes
2178 DATE Fri Jan 20 14:39:14 2012
2179 NSEQ 2
2180 EFFN 2.000000
2181 CKSUM 708669621
2182 STATS LOCAL MSV -7.6157 0.72839
2183 STATS LOCAL VITERBI -8.2097 0.72839
2184 STATS LOCAL FORWARD -3.6198 0.72839
2185 HMM A C G T
2186 m->m m->i m->d i->m i->i d->m d->d
2187 COMPO 1.18583 1.58669 1.49120 1.32877
2188 1.38629 1.38629 1.38629 1.38629
2189 0.04879 3.73767 3.73767 1.46634 0.26236 0.00000 *
2190 1 0.23862 2.84929 2.43386 2.70756 1 - -
2191 1.38629 1.38629 1.38629 1.38629
2192 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
2193 2 2.81865 0.23582 2.88868 2.35662 2 - -
2194 1.38629 1.38629 1.38629 1.38629
2195 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
2196 3 0.23862 2.84929 2.43386 2.70756 3 - -
2197 1.38629 1.38629 1.38629 1.38629
2198 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
2199 4 2.57915 2.25909 2.64442 0.28946 4 - -
2200 1.38629 1.38629 1.38629 1.38629
2201 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
2202 5 2.57915 2.25909 2.64442 0.28946 5 - -
2203 1.38629 1.38629 1.38629 1.38629
2204 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
2205 6 2.81865 0.23582 2.88868 2.35662 6 - -
2206 1.38629 1.38629 1.38629 1.38629
2207 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
2208 7 2.53331 3.02441 0.20344 2.88069 7 - -
2209 1.38629 1.38629 1.38629 1.38629
2210 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
2211 8 2.57915 2.25909 2.64442 0.28946 8 - -
2212 1.38629 1.38629 1.38629 1.38629
2213 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
2214 9 0.23862 2.84929 2.43386 2.70756 9 - -
2215 1.38629 1.38629 1.38629 1.38629
2216 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
2217 10 0.23862 2.84929 2.43386 2.70756 10 - -
2218 1.38629 1.38629 1.38629 1.38629
2219 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
2220 11 2.81865 0.23582 2.88868 2.35662 11 - -
2221 1.38629 1.38629 1.38629 1.38629
2222 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
2223 12 0.23862 2.84929 2.43386 2.70756 12 - -
2224 1.38629 1.38629 1.38629 1.38629
2225 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
2226 13 0.23862 2.84929 2.43386 2.70756 13 - -
2227 1.38629 1.38629 1.38629 1.38629
2228 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
2229 14 2.57915 2.25909 2.64442 0.28946 14 - -
2230 1.38629 1.38629 1.38629 1.38629
2231 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
2232 15 2.53331 3.02441 0.20344 2.88069 15 - -
2233 1.38629 1.38629 1.38629 1.38629
2234 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
2235 16 2.53331 3.02441 0.20344 2.88069 16 - -
2236 1.38629 1.38629 1.38629 1.38629
2237 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
2238 17 0.23862 2.84929 2.43386 2.70756 17 - -
2239 1.38629 1.38629 1.38629 1.38629
2240 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
2241 18 2.57915 2.25909 2.64442 0.28946 18 - -
2242 1.38629 1.38629 1.38629 1.38629
2243 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
2244 19 0.23862 2.84929 2.43386 2.70756 19 - -
2245 1.38629 1.38629 1.38629 1.38629
2246 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
2247 20 2.57915 2.25909 2.64442 0.28946 20 - -
2248 1.38629 1.38629 1.38629 1.38629
2249 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
2250 21 2.81865 0.23582 2.88868 2.35662 21 - -
2251 1.38629 1.38629 1.38629 1.38629
2252 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
2253 22 2.57915 2.25909 2.64442 0.28946 22 - -
2254 1.38629 1.38629 1.38629 1.38629
2255 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
2256 23 2.57915 2.25909 2.64442 0.28946 23 - -
2257 1.38629 1.38629 1.38629 1.38629
2258 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
2259 24 2.53331 3.02441 0.20344 2.88069 24 - -
2260 1.38629 1.38629 1.38629 1.38629
2261 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
2262 25 2.53331 3.02441 0.20344 2.88069 25 - -
2263 1.38629 1.38629 1.38629 1.38629
2264 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
2265 26 2.57915 2.25909 2.64442 0.28946 26 - -
2266 1.38629 1.38629 1.38629 1.38629
2267 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
2268 27 2.57915 2.25909 2.64442 0.28946 27 - -
2269 1.38629 1.38629 1.38629 1.38629
2270 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
2271 28 2.81865 0.23582 2.88868 2.35662 28 - -
2272 1.38629 1.38629 1.38629 1.38629
2273 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
2274 29 2.57915 2.25909 2.64442 0.28946 29 - -
2275 1.38629 1.38629 1.38629 1.38629
2276 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
2277 30 2.81865 0.23582 2.88868 2.35662 30 - -
2278 1.38629 1.38629 1.38629 1.38629
2279 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
2280 31 2.53331 3.02441 0.20344 2.88069 31 - -
2281 1.38629 1.38629 1.38629 1.38629
2282 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
2283 32 2.57915 2.25909 2.64442 0.28946 32 - -
2284 1.38629 1.38629 1.38629 1.38629
2285 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
2286 33 0.23862 2.84929 2.43386 2.70756 33 - -
2287 1.38629 1.38629 1.38629 1.38629
2288 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
2289 34 0.23862 2.84929 2.43386 2.70756 34 - -
2290 1.38629 1.38629 1.38629 1.38629
2291 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
2292 35 2.81865 0.23582 2.88868 2.35662 35 - -
2293 1.38629 1.38629 1.38629 1.38629
2294 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
2295 36 2.53331 3.02441 0.20344 2.88069 36 - -
2296 1.38629 1.38629 1.38629 1.38629
2297 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
2298 37 0.23862 2.84929 2.43386 2.70756 37 - -
2299 1.38629 1.38629 1.38629 1.38629
2300 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
2301 38 2.57915 2.25909 2.64442 0.28946 38 - -
2302 1.38629 1.38629 1.38629 1.38629
2303 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
2304 39 2.53331 3.02441 0.20344 2.88069 39 - -
2305 1.38629 1.38629 1.38629 1.38629
2306 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
2307 40 0.23862 2.84929 2.43386 2.70756 40 - -
2308 1.38629 1.38629 1.38629 1.38629
2309 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
2310 41 0.23862 2.84929 2.43386 2.70756 41 - -
2311 1.38629 1.38629 1.38629 1.38629
2312 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
2313 42 2.53331 3.02441 0.20344 2.88069 42 - -
2314 1.38629 1.38629 1.38629 1.38629
2315 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
2316 43 0.23862 2.84929 2.43386 2.70756 43 - -
2317 1.38629 1.38629 1.38629 1.38629
2318 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
2319 44 0.23862 2.84929 2.43386 2.70756 44 - -
2320 1.38629 1.38629 1.38629 1.38629
2321 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
2322 45 2.81865 0.23582 2.88868 2.35662 45 - -
2323 1.38629 1.38629 1.38629 1.38629
2324 0.02469 3.71357 * 1.46634 0.26236 0.00000 *
2325 //
2326 HMMER3/b [3.0 | March 2010]
2327 NAME 2_5.8_Rhizaria_58S_start_two_long
2328 LENG 45
2329 ALPH DNA
2330 RF no
2331 CS no
2332 MAP yes
2333 DATE Fri Jan 20 14:39:07 2012
2334 NSEQ 31
2335 EFFN 3.757690
2336 CKSUM 3240878011
2337 STATS LOCAL MSV -7.2460 0.71932
2338 STATS LOCAL VITERBI -7.7295 0.71932
2339 STATS LOCAL FORWARD -4.3227 0.71932
2340 HMM A C G T
2341 m->m m->i m->d i->m i->i d->m d->d
2342 COMPO 1.16412 1.39048 1.62656 1.41782
2343 1.38629 1.38629 1.38629 1.38629
2344 0.03415 4.08727 4.08727 1.46634 0.26236 0.00000 *
2345 1 3.58181 0.11379 3.62473 2.93607 1 - -
2346 1.38629 1.38629 1.38629 1.38629
2347 0.03415 4.08727 4.08727 1.46634 0.26236 1.09861 0.40547
2348 2 0.12590 3.50995 2.88560 3.42416 2 - -
2349 1.38629 1.38629 1.38629 1.38629
2350 0.03415 4.08727 4.08727 1.46634 0.26236 1.09861 0.40547
2351 3 0.12590 3.50995 2.88560 3.42416 3 - -
2352 1.38629 1.38629 1.38629 1.38629
2353 0.03415 4.08727 4.08727 1.46634 0.26236 1.09861 0.40547
2354 4 3.58181 0.11379 3.62473 2.93607 4 - -
2355 1.38629 1.38629 1.38629 1.38629
2356 0.03415 4.08727 4.08727 1.46634 0.26236 1.09861 0.40547
2357 5 3.22150 2.67945 3.26449 0.15866 5 - -
2358 1.38629 1.38629 1.38629 1.38629
2359 0.03415 4.08727 4.08727 1.46634 0.26236 1.09861 0.40547
2360 6 3.58181 0.11379 3.62473 2.93607 6 - -
2361 1.38629 1.38629 1.38629 1.38629
2362 0.03415 4.08727 4.08727 1.46634 0.26236 1.09861 0.40547
2363 7 3.22150 2.67945 3.26449 0.15866 7 - -
2364 1.38629 1.38629 1.38629 1.38629
2365 0.03415 4.08727 4.08727 1.46634 0.26236 1.09861 0.40547
2366 8 3.22150 2.67945 3.26449 0.15866 8 - -
2367 1.38629 1.38629 1.38629 1.38629
2368 0.03415 4.08727 4.08727 1.46634 0.26236 1.09861 0.40547
2369 9 0.12590 3.50995 2.88560 3.42416 9 - -
2370 1.38629 1.38629 1.38629 1.38629
2371 0.03415 4.08727 4.08727 1.46634 0.26236 1.09861 0.40547
2372 10 1.78111 2.99185 0.32259 2.86322 10 - -
2373 1.38629 1.38629 1.38629 1.38629
2374 0.03415 4.08727 4.08727 1.46634 0.26236 1.09861 0.40547
2375 11 3.58181 0.11379 3.62473 2.93607 11 - -
2376 1.38629 1.38629 1.38629 1.38629
2377 0.03415 4.08727 4.08727 1.46634 0.26236 1.09861 0.40547
2378 12 0.12590 3.50995 2.88560 3.42416 12 - -
2379 1.38629 1.38629 1.38629 1.38629
2380 0.03415 4.08727 4.08727 1.46634 0.26236 1.09861 0.40547
2381 13 0.34060 2.91802 1.75258 2.79211 13 - -
2382 1.38629 1.38629 1.38629 1.38629
2383 0.03415 4.08727 4.08727 1.46634 0.26236 1.09861 0.40547
2384 14 3.22150 2.67945 3.26449 0.15866 14 - -
2385 1.38629 1.38629 1.38629 1.38629
2386 0.03415 4.08727 4.08727 1.46634 0.26236 1.09861 0.40547
2387 15 1.66599 2.91709 0.36359 2.78503 15 - -
2388 1.38629 1.38629 1.38629 1.38629
2389 0.03415 4.08727 4.08727 1.46634 0.26236 1.09861 0.40547
2390 16 3.03598 3.71764 0.10389 3.63616 16 - -
2391 1.38629 1.38629 1.38629 1.38629
2392 0.03415 4.08727 4.08727 1.46634 0.26236 1.09861 0.40547
2393 17 0.12590 3.50995 2.88560 3.42416 17 - -
2394 1.38629 1.38629 1.38629 1.38629
2395 0.03415 4.08727 4.08727 1.46634 0.26236 1.09861 0.40547
2396 18 3.22150 2.67945 3.26449 0.15866 18 - -
2397 1.38629 1.38629 1.38629 1.38629
2398 0.03415 4.08727 4.08727 1.46634 0.26236 1.09861 0.40547
2399 19 0.12590 3.50995 2.88560 3.42416 19 - -
2400 1.38629 1.38629 1.38629 1.38629
2401 0.03415 4.08727 4.08727 1.46634 0.26236 1.09861 0.40547
2402 20 3.22150 2.67945 3.26449 0.15866 20 - -
2403 1.38629 1.38629 1.38629 1.38629
2404 0.03415 4.08727 4.08727 1.46634 0.26236 1.09861 0.40547
2405 21 3.58181 0.11379 3.62473 2.93607 21 - -
2406 1.38629 1.38629 1.38629 1.38629
2407 0.03415 4.08727 4.08727 1.46634 0.26236 1.09861 0.40547
2408 22 3.22150 2.67945 3.26449 0.15866 22 - -
2409 1.38629 1.38629 1.38629 1.38629
2410 0.03415 4.08727 4.08727 1.46634 0.26236 1.09861 0.40547
2411 23 3.22150 2.67945 3.26449 0.15866 23 - -
2412 1.38629 1.38629 1.38629 1.38629
2413 0.03415 4.08727 4.08727 1.46634 0.26236 1.09861 0.40547
2414 24 3.03598 3.71764 0.10389 3.63616 24 - -
2415 1.38629 1.38629 1.38629 1.38629
2416 0.03415 4.08727 4.08727 1.46634 0.26236 1.09861 0.40547
2417 25 3.03598 3.71764 0.10389 3.63616 25 - -
2418 1.38629 1.38629 1.38629 1.38629
2419 0.03415 4.08727 4.08727 1.46634 0.26236 1.09861 0.40547
2420 26 3.11416 2.40862 3.16158 0.19445 26 - -
2421 1.38629 1.38629 1.38629 1.38629
2422 0.03415 4.08727 4.08727 1.46634 0.26236 1.09861 0.40547
2423 27 3.22150 2.67945 3.26449 0.15866 27 - -
2424 1.38629 1.38629 1.38629 1.38629
2425 0.03415 4.08727 4.08727 1.46634 0.26236 1.09861 0.40547
2426 28 3.58181 0.11379 3.62473 2.93607 28 - -
2427 1.38629 1.38629 1.38629 1.38629
2428 0.03415 4.08727 4.08727 1.46634 0.26236 1.09861 0.40547
2429 29 2.89669 0.32029 2.96150 1.78907 29 - -
2430 1.38629 1.38629 1.38629 1.38629
2431 0.03415 4.08727 4.08727 1.46634 0.26236 1.09861 0.40547
2432 30 3.58181 0.11379 3.62473 2.93607 30 - -
2433 1.38629 1.38629 1.38629 1.38629
2434 0.03415 4.08727 4.08727 1.46634 0.26236 1.09861 0.40547
2435 31 0.42036 2.79880 1.54738 2.66644 31 - -
2436 1.38629 1.38629 1.38629 1.38629
2437 0.03415 4.08727 4.08727 1.46634 0.26236 1.09861 0.40547
2438 32 3.58181 0.11379 3.62473 2.93607 32 - -
2439 1.38629 1.38629 1.38629 1.38629
2440 0.03415 4.08727 4.08727 1.46634 0.26236 1.09861 0.40547
2441 33 0.12590 3.50995 2.88560 3.42416 33 - -
2442 1.38629 1.38629 1.38629 1.38629
2443 0.03415 4.08727 4.08727 1.46634 0.26236 1.09861 0.40547
2444 34 0.12590 3.50995 2.88560 3.42416 34 - -
2445 1.38629 1.38629 1.38629 1.38629
2446 0.03415 4.08727 4.08727 1.46634 0.26236 1.09861 0.40547
2447 35 3.58181 0.11379 3.62473 2.93607 35 - -
2448 1.38629 1.38629 1.38629 1.38629
2449 0.03415 4.08727 4.08727 1.46634 0.26236 1.09861 0.40547
2450 36 3.03598 3.71764 0.10389 3.63616 36 - -
2451 1.38629 1.38629 1.38629 1.38629
2452 0.03415 4.08727 4.08727 1.46634 0.26236 1.09861 0.40547
2453 37 0.12590 3.50995 2.88560 3.42416 37 - -
2454 1.38629 1.38629 1.38629 1.38629
2455 0.03415 4.08727 4.08727 1.46634 0.26236 1.09861 0.40547
2456 38 3.22150 2.67945 3.26449 0.15866 38 - -
2457 1.38629 1.38629 1.38629 1.38629
2458 0.03415 4.08727 4.08727 1.46634 0.26236 1.09861 0.40547
2459 39 3.03598 3.71764 0.10389 3.63616 39 - -
2460 1.38629 1.38629 1.38629 1.38629
2461 0.03415 4.08727 4.08727 1.46634 0.26236 1.09861 0.40547
2462 40 0.12590 3.50995 2.88560 3.42416 40 - -
2463 1.38629 1.38629 1.38629 1.38629
2464 0.03415 4.08727 4.08727 1.46634 0.26236 1.09861 0.40547
2465 41 0.12590 3.50995 2.88560 3.42416 41 - -
2466 1.38629 1.38629 1.38629 1.38629
2467 0.03415 4.08727 4.08727 1.46634 0.26236 1.09861 0.40547
2468 42 3.03598 3.71764 0.10389 3.63616 42 - -
2469 1.38629 1.38629 1.38629 1.38629
2470 0.03415 4.08727 4.08727 1.46634 0.26236 1.09861 0.40547
2471 43 0.12590 3.50995 2.88560 3.42416 43 - -
2472 1.38629 1.38629 1.38629 1.38629
2473 0.03415 4.08727 4.08727 1.46634 0.26236 1.09861 0.40547
2474 44 0.12590 3.50995 2.88560 3.42416 44 - -
2475 1.38629 1.38629 1.38629 1.38629
2476 0.03415 4.08727 4.08727 1.46634 0.26236 1.09861 0.40547
2477 45 3.58181 0.11379 3.62473 2.93607 45 - -
2478 1.38629 1.38629 1.38629 1.38629
2479 0.01722 4.07034 * 1.46634 0.26236 0.00000 *
2480 //
2481 HMMER3/b [3.0 | March 2010]
2482 NAME 2_5.8_Rhizaria_58S_start_sevenb_long
2483 LENG 45
2484 ALPH DNA
2485 RF no
2486 CS no
2487 MAP yes
2488 DATE Sat Jan 7 01:37:55 2012
2489 NSEQ 2
2490 EFFN 2.000000
2491 CKSUM 936571363
2492 STATS LOCAL MSV -7.4273 0.72954
2493 STATS LOCAL VITERBI -8.2698 0.72954
2494 STATS LOCAL FORWARD -3.3835 0.72954
2495 HMM A C G T
2496 m->m m->i m->d i->m i->i d->m d->d
2497 COMPO 1.21521 1.42509 1.55460 1.37996
2498 1.38629 1.38629 1.38629 1.38629
2499 0.04879 3.73767 3.73767 1.46634 0.26236 0.00000 *
2500 1 2.81865 0.23582 2.88868 2.35662 1 - -
2501 1.38629 1.38629 1.38629 1.38629
2502 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
2503 2 0.23862 2.84929 2.43386 2.70756 2 - -
2504 1.38629 1.38629 1.38629 1.38629
2505 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
2506 3 0.23862 2.84929 2.43386 2.70756 3 - -
2507 1.38629 1.38629 1.38629 1.38629
2508 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
2509 4 2.81865 0.23582 2.88868 2.35662 4 - -
2510 1.38629 1.38629 1.38629 1.38629
2511 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
2512 5 2.57915 2.25909 2.64442 0.28946 5 - -
2513 1.38629 1.38629 1.38629 1.38629
2514 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
2515 6 2.81865 0.23582 2.88868 2.35662 6 - -
2516 1.38629 1.38629 1.38629 1.38629
2517 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
2518 7 2.57915 2.25909 2.64442 0.28946 7 - -
2519 1.38629 1.38629 1.38629 1.38629
2520 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
2521 8 2.57915 2.25909 2.64442 0.28946 8 - -
2522 1.38629 1.38629 1.38629 1.38629
2523 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
2524 9 0.23862 2.84929 2.43386 2.70756 9 - -
2525 1.38629 1.38629 1.38629 1.38629
2526 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
2527 10 0.23862 2.84929 2.43386 2.70756 10 - -
2528 1.38629 1.38629 1.38629 1.38629
2529 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
2530 11 2.81865 0.23582 2.88868 2.35662 11 - -
2531 1.38629 1.38629 1.38629 1.38629
2532 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
2533 12 0.23862 2.84929 2.43386 2.70756 12 - -
2534 1.38629 1.38629 1.38629 1.38629
2535 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
2536 13 0.23862 2.84929 2.43386 2.70756 13 - -
2537 1.38629 1.38629 1.38629 1.38629
2538 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
2539 14 2.81865 0.23582 2.88868 2.35662 14 - -
2540 1.38629 1.38629 1.38629 1.38629
2541 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
2542 15 2.53331 3.02441 0.20344 2.88069 15 - -
2543 1.38629 1.38629 1.38629 1.38629
2544 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
2545 16 2.53331 3.02441 0.20344 2.88069 16 - -
2546 1.38629 1.38629 1.38629 1.38629
2547 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
2548 17 0.23862 2.84929 2.43386 2.70756 17 - -
2549 1.38629 1.38629 1.38629 1.38629
2550 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
2551 18 2.57915 2.25909 2.64442 0.28946 18 - -
2552 1.38629 1.38629 1.38629 1.38629
2553 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
2554 19 0.23862 2.84929 2.43386 2.70756 19 - -
2555 1.38629 1.38629 1.38629 1.38629
2556 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
2557 20 2.57915 2.25909 2.64442 0.28946 20 - -
2558 1.38629 1.38629 1.38629 1.38629
2559 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
2560 21 2.81865 0.23582 2.88868 2.35662 21 - -
2561 1.38629 1.38629 1.38629 1.38629
2562 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
2563 22 2.57915 2.25909 2.64442 0.28946 22 - -
2564 1.38629 1.38629 1.38629 1.38629
2565 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
2566 23 2.57915 2.25909 2.64442 0.28946 23 - -
2567 1.38629 1.38629 1.38629 1.38629
2568 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
2569 24 2.53331 3.02441 0.20344 2.88069 24 - -
2570 1.38629 1.38629 1.38629 1.38629
2571 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
2572 25 2.53331 3.02441 0.20344 2.88069 25 - -
2573 1.38629 1.38629 1.38629 1.38629
2574 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
2575 26 2.15554 1.00938 2.23102 0.88601 26 - -
2576 1.38629 1.38629 1.38629 1.38629
2577 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
2578 27 2.57915 2.25909 2.64442 0.28946 27 - -
2579 1.38629 1.38629 1.38629 1.38629
2580 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
2581 28 2.81865 0.23582 2.88868 2.35662 28 - -
2582 1.38629 1.38629 1.38629 1.38629
2583 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
2584 29 2.57915 2.25909 2.64442 0.28946 29 - -
2585 1.38629 1.38629 1.38629 1.38629
2586 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
2587 30 2.81865 0.23582 2.88868 2.35662 30 - -
2588 1.38629 1.38629 1.38629 1.38629
2589 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
2590 31 2.53331 3.02441 0.20344 2.88069 31 - -
2591 1.38629 1.38629 1.38629 1.38629
2592 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
2593 32 2.57915 2.25909 2.64442 0.28946 32 - -
2594 1.38629 1.38629 1.38629 1.38629
2595 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
2596 33 0.23862 2.84929 2.43386 2.70756 33 - -
2597 1.38629 1.38629 1.38629 1.38629
2598 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
2599 34 1.03732 1.95876 1.96551 1.00928 34 - -
2600 1.38629 1.38629 1.38629 1.38629
2601 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
2602 35 2.81865 0.23582 2.88868 2.35662 35 - -
2603 1.38629 1.38629 1.38629 1.38629
2604 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
2605 36 2.53331 3.02441 0.20344 2.88069 36 - -
2606 1.38629 1.38629 1.38629 1.38629
2607 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
2608 37 0.23862 2.84929 2.43386 2.70756 37 - -
2609 1.38629 1.38629 1.38629 1.38629
2610 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
2611 38 2.57915 2.25909 2.64442 0.28946 38 - -
2612 1.38629 1.38629 1.38629 1.38629
2613 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
2614 39 2.53331 3.02441 0.20344 2.88069 39 - -
2615 1.38629 1.38629 1.38629 1.38629
2616 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
2617 40 0.23862 2.84929 2.43386 2.70756 40 - -
2618 1.38629 1.38629 1.38629 1.38629
2619 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
2620 41 0.23862 2.84929 2.43386 2.70756 41 - -
2621 1.38629 1.38629 1.38629 1.38629
2622 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
2623 42 2.53331 3.02441 0.20344 2.88069 42 - -
2624 1.38629 1.38629 1.38629 1.38629
2625 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
2626 43 0.23862 2.84929 2.43386 2.70756 43 - -
2627 1.38629 1.38629 1.38629 1.38629
2628 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
2629 44 0.23862 2.84929 2.43386 2.70756 44 - -
2630 1.38629 1.38629 1.38629 1.38629
2631 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
2632 45 2.81865 0.23582 2.88868 2.35662 45 - -
2633 1.38629 1.38629 1.38629 1.38629
2634 0.02469 3.71357 * 1.46634 0.26236 0.00000 *
2635 //
2636 HMMER3/b [3.0 | March 2010]
2637 NAME 2_5.8_Rhizaria_58S_start_ten_long
2638 LENG 45
2639 ALPH DNA
2640 RF no
2641 CS no
2642 MAP yes
2643 DATE Sat Jan 7 01:38:08 2012
2644 NSEQ 221
2645 EFFN 3.469986
2646 CKSUM 3178722947
2647 STATS LOCAL MSV -7.3549 0.71932
2648 STATS LOCAL VITERBI -7.7369 0.71932
2649 STATS LOCAL FORWARD -4.0992 0.71932
2650 HMM A C G T
2651 m->m m->i m->d i->m i->i d->m d->d
2652 COMPO 1.63448 1.53575 1.24649 1.19687
2653 1.38629 1.38629 1.38629 1.38629
2654 0.03591 4.03777 4.03777 1.46634 0.26236 0.00000 *
2655 1 0.18763 2.92286 2.65754 3.05390 1 - -
2656 1.38629 1.38629 1.38629 1.38629
2657 0.03591 4.03777 4.03777 1.46634 0.26236 1.09861 0.40547
2658 2 2.69988 0.30745 2.22941 2.40931 2 - -
2659 1.38629 1.38629 1.38629 1.38629
2660 0.03591 4.03777 4.03777 1.46634 0.26236 1.09861 0.40547
2661 3 3.13531 2.62481 3.18166 0.17133 3 - -
2662 1.38629 1.38629 1.38629 1.38629
2663 0.03591 4.03777 4.03777 1.46634 0.26236 1.09861 0.40547
2664 4 2.86894 3.58577 0.12204 3.49300 4 - -
2665 1.38629 1.38629 1.38629 1.38629
2666 0.03591 4.03777 4.03777 1.46634 0.26236 1.09861 0.40547
2667 5 3.48606 0.12407 3.53324 2.86739 5 - -
2668 1.38629 1.38629 1.38629 1.38629
2669 0.03591 4.03777 4.03777 1.46634 0.26236 1.09861 0.40547
2670 6 0.14975 3.37268 2.70284 3.27630 6 - -
2671 1.38629 1.38629 1.38629 1.38629
2672 0.03591 4.03777 4.03777 1.46634 0.26236 1.09861 0.40547
2673 7 3.13531 2.62481 3.18166 0.17133 7 - -
2674 1.38629 1.38629 1.38629 1.38629
2675 0.03591 4.03777 4.03777 1.46634 0.26236 1.09861 0.40547
2676 8 2.97936 3.63424 0.11220 3.54379 8 - -
2677 1.38629 1.38629 1.38629 1.38629
2678 0.03591 4.03777 4.03777 1.46634 0.26236 1.09861 0.40547
2679 9 0.14692 3.38343 2.72774 3.28763 9 - -
2680 1.38629 1.38629 1.38629 1.38629
2681 0.03591 4.03777 4.03777 1.46634 0.26236 1.09861 0.40547
2682 10 2.97936 3.63424 0.11220 3.54379 10 - -
2683 1.38629 1.38629 1.38629 1.38629
2684 0.03591 4.03777 4.03777 1.46634 0.26236 1.09861 0.40547
2685 11 3.48606 0.12407 3.53324 2.86739 11 - -
2686 1.38629 1.38629 1.38629 1.38629
2687 0.03591 4.03777 4.03777 1.46634 0.26236 1.09861 0.40547
2688 12 2.97936 3.63424 0.11220 3.54379 12 - -
2689 1.38629 1.38629 1.38629 1.38629
2690 0.03591 4.03777 4.03777 1.46634 0.26236 1.09861 0.40547
2691 13 0.13597 3.42628 2.83173 3.33234 13 - -
2692 1.38629 1.38629 1.38629 1.38629
2693 0.03591 4.03777 4.03777 1.46634 0.26236 1.09861 0.40547
2694 14 3.13531 2.62481 3.18166 0.17133 14 - -
2695 1.38629 1.38629 1.38629 1.38629
2696 0.03591 4.03777 4.03777 1.46634 0.26236 1.09861 0.40547
2697 15 2.97936 3.63424 0.11220 3.54379 15 - -
2698 1.38629 1.38629 1.38629 1.38629
2699 0.03591 4.03777 4.03777 1.46634 0.26236 1.09861 0.40547
2700 16 2.97936 3.63424 0.11220 3.54379 16 - -
2701 1.38629 1.38629 1.38629 1.38629
2702 0.03591 4.03777 4.03777 1.46634 0.26236 1.09861 0.40547
2703 17 0.13597 3.42628 2.83173 3.33234 17 - -
2704 1.38629 1.38629 1.38629 1.38629
2705 0.03591 4.03777 4.03777 1.46634 0.26236 1.09861 0.40547
2706 18 3.13531 2.62481 3.18166 0.17133 18 - -
2707 1.38629 1.38629 1.38629 1.38629
2708 0.03591 4.03777 4.03777 1.46634 0.26236 1.09861 0.40547
2709 19 3.45123 0.12635 3.51748 2.85927 19 - -
2710 1.38629 1.38629 1.38629 1.38629
2711 0.03591 4.03777 4.03777 1.46634 0.26236 1.09861 0.40547
2712 20 3.13531 2.62481 3.18166 0.17133 20 - -
2713 1.38629 1.38629 1.38629 1.38629
2714 0.03591 4.03777 4.03777 1.46634 0.26236 1.09861 0.40547
2715 21 3.48606 0.12407 3.53324 2.86739 21 - -
2716 1.38629 1.38629 1.38629 1.38629
2717 0.03591 4.03777 4.03777 1.46634 0.26236 1.09861 0.40547
2718 22 3.08717 2.50341 3.13523 0.18745 22 - -
2719 1.38629 1.38629 1.38629 1.38629
2720 0.03591 4.03777 4.03777 1.46634 0.26236 1.09861 0.40547
2721 23 3.13531 2.62481 3.18166 0.17133 23 - -
2722 1.38629 1.38629 1.38629 1.38629
2723 0.03591 4.03777 4.03777 1.46634 0.26236 1.09861 0.40547
2724 24 2.97936 3.63424 0.11220 3.54379 24 - -
2725 1.38629 1.38629 1.38629 1.38629
2726 0.03591 4.03777 4.03777 1.46634 0.26236 1.09861 0.40547
2727 25 2.86894 3.58577 0.12204 3.49300 25 - -
2728 1.38629 1.38629 1.38629 1.38629
2729 0.03591 4.03777 4.03777 1.46634 0.26236 1.09861 0.40547
2730 26 3.03546 2.58700 2.95945 0.19255 26 - -
2731 1.38629 1.38629 1.38629 1.38629
2732 0.03591 4.03777 4.03777 1.46634 0.26236 1.09861 0.40547
2733 27 3.13531 2.62481 3.18166 0.17133 27 - -
2734 1.38629 1.38629 1.38629 1.38629
2735 0.03832 4.03777 3.91395 1.46634 0.26236 1.09861 0.40547
2736 28 3.48143 0.12459 3.52882 2.86404 28 - -
2737 1.38629 1.38629 1.38629 1.38629
2738 0.03600 4.03544 4.03544 1.46634 0.26236 1.01779 0.44846
2739 29 3.48606 0.12407 3.53324 2.86739 29 - -
2740 1.38629 1.38629 1.38629 1.38629
2741 0.03591 4.03777 4.03777 1.46634 0.26236 1.09861 0.40547
2742 30 3.09673 2.52680 3.14443 0.18417 30 - -
2743 1.38629 1.38629 1.38629 1.38629
2744 0.03591 4.03777 4.03777 1.46634 0.26236 1.09861 0.40547
2745 31 3.09210 2.51544 3.13998 0.18575 31 - -
2746 1.38629 1.38629 1.38629 1.38629
2747 0.03591 4.03777 4.03777 1.46634 0.26236 1.09861 0.40547
2748 32 2.97936 3.63424 0.11220 3.54379 32 - -
2749 1.38629 1.38629 1.38629 1.38629
2750 0.03591 4.03777 4.03777 1.46634 0.26236 1.09861 0.40547
2751 33 3.48606 0.12407 3.53324 2.86739 33 - -
2752 1.38629 1.38629 1.38629 1.38629
2753 0.03591 4.03777 4.03777 1.46634 0.26236 1.09861 0.40547
2754 34 0.13597 3.42628 2.83173 3.33234 34 - -
2755 1.38629 1.38629 1.38629 1.38629
2756 0.03591 4.03777 4.03777 1.46634 0.26236 1.09861 0.40547
2757 35 3.13531 2.62481 3.18166 0.17133 35 - -
2758 1.38629 1.38629 1.38629 1.38629
2759 0.03591 4.03777 4.03777 1.46634 0.26236 1.09861 0.40547
2760 36 3.48606 0.12407 3.53324 2.86739 36 - -
2761 1.38629 1.38629 1.38629 1.38629
2762 0.03591 4.03777 4.03777 1.46634 0.26236 1.09861 0.40547
2763 37 2.97936 3.63424 0.11220 3.54379 37 - -
2764 1.38629 1.38629 1.38629 1.38629
2765 0.03591 4.03777 4.03777 1.46634 0.26236 1.09861 0.40547
2766 38 3.09579 2.52447 3.14352 0.18449 38 - -
2767 1.38629 1.38629 1.38629 1.38629
2768 0.03591 4.03777 4.03777 1.46634 0.26236 1.09861 0.40547
2769 39 3.13531 2.62481 3.18166 0.17133 39 - -
2770 1.38629 1.38629 1.38629 1.38629
2771 0.03591 4.03777 4.03777 1.46634 0.26236 1.09861 0.40547
2772 40 2.86894 3.58577 0.12204 3.49300 40 - -
2773 1.38629 1.38629 1.38629 1.38629
2774 0.03591 4.03777 4.03777 1.46634 0.26236 1.09861 0.40547
2775 41 0.13597 3.42628 2.83173 3.33234 41 - -
2776 1.38629 1.38629 1.38629 1.38629
2777 0.03591 4.03777 4.03777 1.46634 0.26236 1.09861 0.40547
2778 42 0.14692 3.38343 2.72774 3.28763 42 - -
2779 1.38629 1.38629 1.38629 1.38629
2780 0.03591 4.03777 4.03777 1.46634 0.26236 1.09861 0.40547
2781 43 2.97936 3.63424 0.11220 3.54379 43 - -
2782 1.38629 1.38629 1.38629 1.38629
2783 0.03591 4.03777 4.03777 1.46634 0.26236 1.09861 0.40547
2784 44 2.97936 3.63424 0.11220 3.54379 44 - -
2785 1.38629 1.38629 1.38629 1.38629
2786 0.03591 4.03777 4.03777 1.46634 0.26236 1.09861 0.40547
2787 45 3.09579 2.52447 3.14352 0.18449 45 - -
2788 1.38629 1.38629 1.38629 1.38629
2789 0.01812 4.01998 * 1.46634 0.26236 0.00000 *
2790 //
2791 HMMER3/b [3.0 | March 2010]
2792 NAME 2_5.8_Rhizaria_58S_start_twelve_long
2793 LENG 45
2794 ALPH DNA
2795 RF no
2796 CS no
2797 MAP yes
2798 DATE Sat Jan 7 01:38:58 2012
2799 NSEQ 14
2800 EFFN 3.291504
2801 CKSUM 1264888513
2802 STATS LOCAL MSV -7.9360 0.71932
2803 STATS LOCAL VITERBI -7.7626 0.71932
2804 STATS LOCAL FORWARD -4.0675 0.71932
2805 HMM A C G T
2806 m->m m->i m->d i->m i->i d->m d->d
2807 COMPO 1.62979 1.52617 1.25455 1.19912
2808 1.38629 1.38629 1.38629 1.38629
2809 0.03710 4.00579 4.00579 1.46634 0.26236 0.00000 *
2810 1 0.14323 3.37023 2.79540 3.27094 1 - -
2811 1.38629 1.38629 1.38629 1.38629
2812 0.03710 4.00579 4.00579 1.46634 0.26236 1.09861 0.40547
2813 2 3.42154 0.13160 3.47149 2.82057 2 - -
2814 1.38629 1.38629 1.38629 1.38629
2815 0.03710 4.00579 4.00579 1.46634 0.26236 1.09861 0.40547
2816 3 3.07849 2.58870 3.12703 0.18032 3 - -
2817 1.38629 1.38629 1.38629 1.38629
2818 0.03710 4.00579 4.00579 1.46634 0.26236 1.09861 0.40547
2819 4 2.94052 3.57756 0.11828 3.48118 4 - -
2820 1.38629 1.38629 1.38629 1.38629
2821 0.03710 4.00579 4.00579 1.46634 0.26236 1.09861 0.40547
2822 5 3.42154 0.13160 3.47149 2.82057 5 - -
2823 1.38629 1.38629 1.38629 1.38629
2824 0.03710 4.00579 4.00579 1.46634 0.26236 1.09861 0.40547
2825 6 0.14323 3.37023 2.79540 3.27094 6 - -
2826 1.38629 1.38629 1.38629 1.38629
2827 0.03710 4.00579 4.00579 1.46634 0.26236 1.09861 0.40547
2828 7 3.07849 2.58870 3.12703 0.18032 7 - -
2829 1.38629 1.38629 1.38629 1.38629
2830 0.03710 4.00579 4.00579 1.46634 0.26236 1.09861 0.40547
2831 8 2.94052 3.57756 0.11828 3.48118 8 - -
2832 1.38629 1.38629 1.38629 1.38629
2833 0.03710 4.00579 4.00579 1.46634 0.26236 1.09861 0.40547
2834 9 0.14323 3.37023 2.79540 3.27094 9 - -
2835 1.38629 1.38629 1.38629 1.38629
2836 0.03710 4.00579 4.00579 1.46634 0.26236 1.09861 0.40547
2837 10 2.94052 3.57756 0.11828 3.48118 10 - -
2838 1.38629 1.38629 1.38629 1.38629
2839 0.03710 4.00579 4.00579 1.46634 0.26236 1.09861 0.40547
2840 11 3.42154 0.13160 3.47149 2.82057 11 - -
2841 1.38629 1.38629 1.38629 1.38629
2842 0.03710 4.00579 4.00579 1.46634 0.26236 1.09861 0.40547
2843 12 2.94052 3.57756 0.11828 3.48118 12 - -
2844 1.38629 1.38629 1.38629 1.38629
2845 0.03710 4.00579 4.00579 1.46634 0.26236 1.09861 0.40547
2846 13 0.14323 3.37023 2.79540 3.27094 13 - -
2847 1.38629 1.38629 1.38629 1.38629
2848 0.03710 4.00579 4.00579 1.46634 0.26236 1.09861 0.40547
2849 14 3.07849 2.58870 3.12703 0.18032 14 - -
2850 1.38629 1.38629 1.38629 1.38629
2851 0.03710 4.00579 4.00579 1.46634 0.26236 1.09861 0.40547
2852 15 2.94052 3.57756 0.11828 3.48118 15 - -
2853 1.38629 1.38629 1.38629 1.38629
2854 0.03710 4.00579 4.00579 1.46634 0.26236 1.09861 0.40547
2855 16 2.94052 3.57756 0.11828 3.48118 16 - -
2856 1.38629 1.38629 1.38629 1.38629
2857 0.03710 4.00579 4.00579 1.46634 0.26236 1.09861 0.40547
2858 17 0.14323 3.37023 2.79540 3.27094 17 - -
2859 1.38629 1.38629 1.38629 1.38629
2860 0.03710 4.00579 4.00579 1.46634 0.26236 1.09861 0.40547
2861 18 3.07849 2.58870 3.12703 0.18032 18 - -
2862 1.38629 1.38629 1.38629 1.38629
2863 0.03710 4.00579 4.00579 1.46634 0.26236 1.09861 0.40547
2864 19 3.42154 0.13160 3.47149 2.82057 19 - -
2865 1.38629 1.38629 1.38629 1.38629
2866 0.03710 4.00579 4.00579 1.46634 0.26236 1.09861 0.40547
2867 20 3.07849 2.58870 3.12703 0.18032 20 - -
2868 1.38629 1.38629 1.38629 1.38629
2869 0.03710 4.00579 4.00579 1.46634 0.26236 1.09861 0.40547
2870 21 3.42154 0.13160 3.47149 2.82057 21 - -
2871 1.38629 1.38629 1.38629 1.38629
2872 0.03710 4.00579 4.00579 1.46634 0.26236 1.09861 0.40547
2873 22 3.07849 2.58870 3.12703 0.18032 22 - -
2874 1.38629 1.38629 1.38629 1.38629
2875 0.03710 4.00579 4.00579 1.46634 0.26236 1.09861 0.40547
2876 23 3.07849 2.58870 3.12703 0.18032 23 - -
2877 1.38629 1.38629 1.38629 1.38629
2878 0.03710 4.00579 4.00579 1.46634 0.26236 1.09861 0.40547
2879 24 2.94052 3.57756 0.11828 3.48118 24 - -
2880 1.38629 1.38629 1.38629 1.38629
2881 0.03710 4.00579 4.00579 1.46634 0.26236 1.09861 0.40547
2882 25 2.94052 3.57756 0.11828 3.48118 25 - -
2883 1.38629 1.38629 1.38629 1.38629
2884 0.03710 4.00579 4.00579 1.46634 0.26236 1.09861 0.40547
2885 26 3.07849 2.58870 3.12703 0.18032 26 - -
2886 1.38629 1.38629 1.38629 1.38629
2887 0.03710 4.00579 4.00579 1.46634 0.26236 1.09861 0.40547
2888 27 3.07849 2.58870 3.12703 0.18032 27 - -
2889 1.38629 1.38629 1.38629 1.38629
2890 0.03710 4.00579 4.00579 1.46634 0.26236 1.09861 0.40547
2891 28 3.42154 0.13160 3.47149 2.82057 28 - -
2892 1.38629 1.38629 1.38629 1.38629
2893 0.03710 4.00579 4.00579 1.46634 0.26236 1.09861 0.40547
2894 29 3.42154 0.13160 3.47149 2.82057 29 - -
2895 1.38629 1.38629 1.38629 1.38629
2896 0.03710 4.00579 4.00579 1.46634 0.26236 1.09861 0.40547
2897 30 3.07849 2.58870 3.12703 0.18032 30 - -
2898 1.38629 1.38629 1.38629 1.38629
2899 0.03710 4.00579 4.00579 1.46634 0.26236 1.09861 0.40547
2900 31 3.07849 2.58870 3.12703 0.18032 31 - -
2901 1.38629 1.38629 1.38629 1.38629
2902 0.03710 4.00579 4.00579 1.46634 0.26236 1.09861 0.40547
2903 32 2.94052 3.57756 0.11828 3.48118 32 - -
2904 1.38629 1.38629 1.38629 1.38629
2905 0.03710 4.00579 4.00579 1.46634 0.26236 1.09861 0.40547
2906 33 3.42154 0.13160 3.47149 2.82057 33 - -
2907 1.38629 1.38629 1.38629 1.38629
2908 0.03710 4.00579 4.00579 1.46634 0.26236 1.09861 0.40547
2909 34 0.14323 3.37023 2.79540 3.27094 34 - -
2910 1.38629 1.38629 1.38629 1.38629
2911 0.03710 4.00579 4.00579 1.46634 0.26236 1.09861 0.40547
2912 35 3.07849 2.58870 3.12703 0.18032 35 - -
2913 1.38629 1.38629 1.38629 1.38629
2914 0.03710 4.00579 4.00579 1.46634 0.26236 1.09861 0.40547
2915 36 3.42154 0.13160 3.47149 2.82057 36 - -
2916 1.38629 1.38629 1.38629 1.38629
2917 0.03710 4.00579 4.00579 1.46634 0.26236 1.09861 0.40547
2918 37 2.94052 3.57756 0.11828 3.48118 37 - -
2919 1.38629 1.38629 1.38629 1.38629
2920 0.03710 4.00579 4.00579 1.46634 0.26236 1.09861 0.40547
2921 38 3.07849 2.58870 3.12703 0.18032 38 - -
2922 1.38629 1.38629 1.38629 1.38629
2923 0.03710 4.00579 4.00579 1.46634 0.26236 1.09861 0.40547
2924 39 3.07849 2.58870 3.12703 0.18032 39 - -
2925 1.38629 1.38629 1.38629 1.38629
2926 0.03710 4.00579 4.00579 1.46634 0.26236 1.09861 0.40547
2927 40 2.94052 3.57756 0.11828 3.48118 40 - -
2928 1.38629 1.38629 1.38629 1.38629
2929 0.03710 4.00579 4.00579 1.46634 0.26236 1.09861 0.40547
2930 41 0.14323 3.37023 2.79540 3.27094 41 - -
2931 1.38629 1.38629 1.38629 1.38629
2932 0.03710 4.00579 4.00579 1.46634 0.26236 1.09861 0.40547
2933 42 0.14323 3.37023 2.79540 3.27094 42 - -
2934 1.38629 1.38629 1.38629 1.38629
2935 0.03710 4.00579 4.00579 1.46634 0.26236 1.09861 0.40547
2936 43 2.94052 3.57756 0.11828 3.48118 43 - -
2937 1.38629 1.38629 1.38629 1.38629
2938 0.03710 4.00579 4.00579 1.46634 0.26236 1.09861 0.40547
2939 44 2.94052 3.57756 0.11828 3.48118 44 - -
2940 1.38629 1.38629 1.38629 1.38629
2941 0.03710 4.00579 4.00579 1.46634 0.26236 1.09861 0.40547
2942 45 3.07849 2.58870 3.12703 0.18032 45 - -
2943 1.38629 1.38629 1.38629 1.38629
2944 0.01872 3.98741 * 1.46634 0.26236 0.00000 *
2945 //
2946 HMMER3/b [3.0 | March 2010]
2947 NAME 4_LSU_Rhizaria_4_LSU_start_eight_long
2948 LENG 45
2949 ALPH DNA
2950 RF no
2951 CS no
2952 MAP yes
2953 DATE Fri Jan 20 15:51:35 2012
2954 NSEQ 3
2955 EFFN 3.000000
2956 CKSUM 1950209703
2957 STATS LOCAL MSV -8.0821 0.72055
2958 STATS LOCAL VITERBI -7.8768 0.72055
2959 STATS LOCAL FORWARD -3.2887 0.72055
2960 HMM A C G T
2961 m->m m->i m->d i->m i->i d->m d->d
2962 COMPO 0.97098 1.50494 1.50771 1.72686
2963 1.38629 1.38629 1.38629 1.38629
2964 0.03922 3.95124 3.95124 1.46634 0.26236 0.00000 *
2965 1 3.30705 0.14631 3.36166 2.73626 1 - -
2966 1.38629 1.38629 1.38629 1.38629
2967 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
2968 2 0.15719 3.27118 2.73043 3.16274 2 - -
2969 1.38629 1.38629 1.38629 1.38629
2970 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
2971 3 0.15719 3.27118 2.73043 3.16274 3 - -
2972 1.38629 1.38629 1.38629 1.38629
2973 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
2974 4 0.15719 3.27118 2.73043 3.16274 4 - -
2975 1.38629 1.38629 1.38629 1.38629
2976 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
2977 5 0.15719 3.27118 2.73043 3.16274 5 - -
2978 1.38629 1.38629 1.38629 1.38629
2979 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
2980 6 0.15719 3.27118 2.73043 3.16274 6 - -
2981 1.38629 1.38629 1.38629 1.38629
2982 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
2983 7 0.15719 3.27118 2.73043 3.16274 7 - -
2984 1.38629 1.38629 1.38629 1.38629
2985 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
2986 8 0.15719 3.27118 2.73043 3.16274 8 - -
2987 1.38629 1.38629 1.38629 1.38629
2988 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
2989 9 3.30705 0.14631 3.36166 2.73626 9 - -
2990 1.38629 1.38629 1.38629 1.38629
2991 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
2992 10 2.97980 2.52563 3.03204 0.19727 10 - -
2993 1.38629 1.38629 1.38629 1.38629
2994 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
2995 11 2.97980 2.52563 3.03204 0.19727 11 - -
2996 1.38629 1.38629 1.38629 1.38629
2997 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
2998 12 0.15719 3.27118 2.73043 3.16274 12 - -
2999 1.38629 1.38629 1.38629 1.38629
3000 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
3001 13 3.30705 0.14631 3.36166 2.73626 13 - -
3002 1.38629 1.38629 1.38629 1.38629
3003 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
3004 14 0.15719 3.27118 2.73043 3.16274 14 - -
3005 1.38629 1.38629 1.38629 1.38629
3006 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
3007 15 0.15719 3.27118 2.73043 3.16274 15 - -
3008 1.38629 1.38629 1.38629 1.38629
3009 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
3010 16 0.15719 3.27118 2.73043 3.16274 16 - -
3011 1.38629 1.38629 1.38629 1.38629
3012 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
3013 17 0.15719 3.27118 2.73043 3.16274 17 - -
3014 1.38629 1.38629 1.38629 1.38629
3015 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
3016 18 2.86982 3.47591 0.13017 3.36931 18 - -
3017 1.38629 1.38629 1.38629 1.38629
3018 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
3019 19 2.97980 2.52563 3.03204 0.19727 19 - -
3020 1.38629 1.38629 1.38629 1.38629
3021 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
3022 20 2.43223 0.62271 2.50508 1.22417 20 - -
3023 1.38629 1.38629 1.38629 1.38629
3024 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
3025 21 2.97980 2.52563 3.03204 0.19727 21 - -
3026 1.38629 1.38629 1.38629 1.38629
3027 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
3028 22 3.30705 0.14631 3.36166 2.73626 22 - -
3029 1.38629 1.38629 1.38629 1.38629
3030 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
3031 23 0.15719 3.27118 2.73043 3.16274 23 - -
3032 1.38629 1.38629 1.38629 1.38629
3033 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
3034 24 0.15719 3.27118 2.73043 3.16274 24 - -
3035 1.38629 1.38629 1.38629 1.38629
3036 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
3037 25 2.86982 3.47591 0.13017 3.36931 25 - -
3038 1.38629 1.38629 1.38629 1.38629
3039 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
3040 26 2.97980 2.52563 3.03204 0.19727 26 - -
3041 1.38629 1.38629 1.38629 1.38629
3042 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
3043 27 2.86982 3.47591 0.13017 3.36931 27 - -
3044 1.38629 1.38629 1.38629 1.38629
3045 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
3046 28 0.15719 3.27118 2.73043 3.16274 28 - -
3047 1.38629 1.38629 1.38629 1.38629
3048 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
3049 29 0.15719 3.27118 2.73043 3.16274 29 - -
3050 1.38629 1.38629 1.38629 1.38629
3051 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
3052 30 2.86982 3.47591 0.13017 3.36931 30 - -
3053 1.38629 1.38629 1.38629 1.38629
3054 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
3055 31 2.97980 2.52563 3.03204 0.19727 31 - -
3056 1.38629 1.38629 1.38629 1.38629
3057 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
3058 32 0.15719 3.27118 2.73043 3.16274 32 - -
3059 1.38629 1.38629 1.38629 1.38629
3060 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
3061 33 0.15719 3.27118 2.73043 3.16274 33 - -
3062 1.38629 1.38629 1.38629 1.38629
3063 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
3064 34 2.86982 3.47591 0.13017 3.36931 34 - -
3065 1.38629 1.38629 1.38629 1.38629
3066 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
3067 35 2.86982 3.47591 0.13017 3.36931 35 - -
3068 1.38629 1.38629 1.38629 1.38629
3069 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
3070 36 3.30705 0.14631 3.36166 2.73626 36 - -
3071 1.38629 1.38629 1.38629 1.38629
3072 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
3073 37 2.86982 3.47591 0.13017 3.36931 37 - -
3074 1.38629 1.38629 1.38629 1.38629
3075 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
3076 38 0.15719 3.27118 2.73043 3.16274 38 - -
3077 1.38629 1.38629 1.38629 1.38629
3078 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
3079 39 3.30705 0.14631 3.36166 2.73626 39 - -
3080 1.38629 1.38629 1.38629 1.38629
3081 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
3082 40 3.30705 0.14631 3.36166 2.73626 40 - -
3083 1.38629 1.38629 1.38629 1.38629
3084 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
3085 41 3.30705 0.14631 3.36166 2.73626 41 - -
3086 1.38629 1.38629 1.38629 1.38629
3087 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
3088 42 2.86982 3.47591 0.13017 3.36931 42 - -
3089 1.38629 1.38629 1.38629 1.38629
3090 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
3091 43 3.30705 0.14631 3.36166 2.73626 43 - -
3092 1.38629 1.38629 1.38629 1.38629
3093 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
3094 44 2.97980 2.52563 3.03204 0.19727 44 - -
3095 1.38629 1.38629 1.38629 1.38629
3096 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
3097 45 2.86982 3.47591 0.13017 3.36931 45 - -
3098 1.38629 1.38629 1.38629 1.38629
3099 0.01980 3.93183 * 1.46634 0.26236 0.00000 *
3100 //
3101 HMMER3/b [3.0 | March 2010]
3102 NAME 4_LSU_Rhizaria_4_LSU_start_five_long
3103 LENG 45
3104 ALPH DNA
3105 RF no
3106 CS no
3107 MAP yes
3108 DATE Fri Jan 20 15:48:20 2012
3109 NSEQ 2
3110 EFFN 2.000000
3111 CKSUM 76545263
3112 STATS LOCAL MSV -7.5144 0.72774
3113 STATS LOCAL VITERBI -8.3161 0.72774
3114 STATS LOCAL FORWARD -3.3498 0.72774
3115 HMM A C G T
3116 m->m m->i m->d i->m i->i d->m d->d
3117 COMPO 1.29057 1.34961 1.37118 1.55242
3118 1.38629 1.38629 1.38629 1.38629
3119 0.04879 3.73767 3.73767 1.46634 0.26236 0.00000 *
3120 1 2.53331 3.02441 0.20344 2.88069 1 - -
3121 1.38629 1.38629 1.38629 1.38629
3122 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
3123 2 2.81865 0.23582 2.88868 2.35662 2 - -
3124 1.38629 1.38629 1.38629 1.38629
3125 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
3126 3 0.23862 2.84929 2.43386 2.70756 3 - -
3127 1.38629 1.38629 1.38629 1.38629
3128 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
3129 4 2.81865 0.23582 2.88868 2.35662 4 - -
3130 1.38629 1.38629 1.38629 1.38629
3131 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
3132 5 2.53331 3.02441 0.20344 2.88069 5 - -
3133 1.38629 1.38629 1.38629 1.38629
3134 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
3135 6 2.57915 2.25909 2.64442 0.28946 6 - -
3136 1.38629 1.38629 1.38629 1.38629
3137 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
3138 7 2.81865 0.23582 2.88868 2.35662 7 - -
3139 1.38629 1.38629 1.38629 1.38629
3140 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
3141 8 2.81865 0.23582 2.88868 2.35662 8 - -
3142 1.38629 1.38629 1.38629 1.38629
3143 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
3144 9 2.57915 2.25909 2.64442 0.28946 9 - -
3145 1.38629 1.38629 1.38629 1.38629
3146 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
3147 10 2.53331 3.02441 0.20344 2.88069 10 - -
3148 1.38629 1.38629 1.38629 1.38629
3149 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
3150 11 2.81865 0.23582 2.88868 2.35662 11 - -
3151 1.38629 1.38629 1.38629 1.38629
3152 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
3153 12 2.53331 3.02441 0.20344 2.88069 12 - -
3154 1.38629 1.38629 1.38629 1.38629
3155 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
3156 13 2.81865 0.23582 2.88868 2.35662 13 - -
3157 1.38629 1.38629 1.38629 1.38629
3158 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
3159 14 2.57915 2.25909 2.64442 0.28946 14 - -
3160 1.38629 1.38629 1.38629 1.38629
3161 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
3162 15 0.23862 2.84929 2.43386 2.70756 15 - -
3163 1.38629 1.38629 1.38629 1.38629
3164 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
3165 16 2.53331 3.02441 0.20344 2.88069 16 - -
3166 1.38629 1.38629 1.38629 1.38629
3167 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
3168 17 0.23862 2.84929 2.43386 2.70756 17 - -
3169 1.38629 1.38629 1.38629 1.38629
3170 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
3171 18 2.53331 3.02441 0.20344 2.88069 18 - -
3172 1.38629 1.38629 1.38629 1.38629
3173 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
3174 19 2.57915 2.25909 2.64442 0.28946 19 - -
3175 1.38629 1.38629 1.38629 1.38629
3176 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
3177 20 0.23862 2.84929 2.43386 2.70756 20 - -
3178 1.38629 1.38629 1.38629 1.38629
3179 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
3180 21 0.23862 2.84929 2.43386 2.70756 21 - -
3181 1.38629 1.38629 1.38629 1.38629
3182 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
3183 22 2.53331 3.02441 0.20344 2.88069 22 - -
3184 1.38629 1.38629 1.38629 1.38629
3185 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
3186 23 0.23862 2.84929 2.43386 2.70756 23 - -
3187 1.38629 1.38629 1.38629 1.38629
3188 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
3189 24 2.53331 3.02441 0.20344 2.88069 24 - -
3190 1.38629 1.38629 1.38629 1.38629
3191 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
3192 25 2.57915 2.25909 2.64442 0.28946 25 - -
3193 1.38629 1.38629 1.38629 1.38629
3194 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
3195 26 0.23862 2.84929 2.43386 2.70756 26 - -
3196 1.38629 1.38629 1.38629 1.38629
3197 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
3198 27 2.81865 0.23582 2.88868 2.35662 27 - -
3199 1.38629 1.38629 1.38629 1.38629
3200 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
3201 28 2.81865 0.23582 2.88868 2.35662 28 - -
3202 1.38629 1.38629 1.38629 1.38629
3203 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
3204 29 2.81865 0.23582 2.88868 2.35662 29 - -
3205 1.38629 1.38629 1.38629 1.38629
3206 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
3207 30 2.53331 3.02441 0.20344 2.88069 30 - -
3208 1.38629 1.38629 1.38629 1.38629
3209 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
3210 31 2.81865 0.23582 2.88868 2.35662 31 - -
3211 1.38629 1.38629 1.38629 1.38629
3212 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
3213 32 2.57915 2.25909 2.64442 0.28946 32 - -
3214 1.38629 1.38629 1.38629 1.38629
3215 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
3216 33 2.53331 3.02441 0.20344 2.88069 33 - -
3217 1.38629 1.38629 1.38629 1.38629
3218 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
3219 34 0.23862 2.84929 2.43386 2.70756 34 - -
3220 1.38629 1.38629 1.38629 1.38629
3221 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
3222 35 0.23862 2.84929 2.43386 2.70756 35 - -
3223 1.38629 1.38629 1.38629 1.38629
3224 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
3225 36 2.81865 0.23582 2.88868 2.35662 36 - -
3226 1.38629 1.38629 1.38629 1.38629
3227 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
3228 37 2.57915 2.25909 2.64442 0.28946 37 - -
3229 1.38629 1.38629 1.38629 1.38629
3230 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
3231 38 2.57915 2.25909 2.64442 0.28946 38 - -
3232 1.38629 1.38629 1.38629 1.38629
3233 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
3234 39 0.23862 2.84929 2.43386 2.70756 39 - -
3235 1.38629 1.38629 1.38629 1.38629
3236 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
3237 40 0.23862 2.84929 2.43386 2.70756 40 - -
3238 1.38629 1.38629 1.38629 1.38629
3239 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
3240 41 2.53331 3.02441 0.20344 2.88069 41 - -
3241 1.38629 1.38629 1.38629 1.38629
3242 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
3243 42 2.81865 0.23582 2.88868 2.35662 42 - -
3244 1.38629 1.38629 1.38629 1.38629
3245 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
3246 43 0.23862 2.84929 2.43386 2.70756 43 - -
3247 1.38629 1.38629 1.38629 1.38629
3248 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
3249 44 2.57915 2.25909 2.64442 0.28946 44 - -
3250 1.38629 1.38629 1.38629 1.38629
3251 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
3252 45 0.23862 2.84929 2.43386 2.70756 45 - -
3253 1.38629 1.38629 1.38629 1.38629
3254 0.02469 3.71357 * 1.46634 0.26236 0.00000 *
3255 //
3256 HMMER3/b [3.0 | March 2010]
3257 NAME 4_LSU_Rhizaria_4_LSU_start_one_long
3258 LENG 45
3259 ALPH DNA
3260 RF no
3261 CS no
3262 MAP yes
3263 DATE Fri Jan 20 15:47:38 2012
3264 NSEQ 12
3265 EFFN 3.395508
3266 CKSUM 2392704946
3267 STATS LOCAL MSV -7.3558 0.71933
3268 STATS LOCAL VITERBI -7.8378 0.71933
3269 STATS LOCAL FORWARD -3.9627 0.71933
3270 HMM A C G T
3271 m->m m->i m->d i->m i->i d->m d->d
3272 COMPO 1.16579 1.72185 1.19494 1.57568
3273 1.38629 1.38629 1.38629 1.38629
3274 0.03640 4.02455 4.02455 1.46634 0.26236 0.00000 *
3275 1 2.25159 2.41497 0.52437 1.54427 1 - -
3276 1.38629 1.38629 1.38629 1.38629
3277 0.03640 4.02455 4.02455 1.46634 0.26236 1.09861 0.40547
3278 2 0.39984 2.76941 1.63350 2.63628 2 - -
3279 1.38629 1.38629 1.38629 1.38629
3280 0.03640 4.02455 4.02455 1.46634 0.26236 1.09861 0.40547
3281 3 3.11192 2.60996 3.15918 0.17496 3 - -
3282 1.38629 1.38629 1.38629 1.38629
3283 0.03640 4.02455 4.02455 1.46634 0.26236 1.09861 0.40547
3284 4 3.11192 2.60996 3.15918 0.17496 4 - -
3285 1.38629 1.38629 1.38629 1.38629
3286 0.03640 4.02455 4.02455 1.46634 0.26236 1.09861 0.40547
3287 5 2.96353 3.61108 0.11464 3.51818 5 - -
3288 1.38629 1.38629 1.38629 1.38629
3289 0.03640 4.02455 4.02455 1.46634 0.26236 1.09861 0.40547
3290 6 0.13889 3.40330 2.81687 3.30715 6 - -
3291 1.38629 1.38629 1.38629 1.38629
3292 0.03640 4.02455 4.02455 1.46634 0.26236 1.09861 0.40547
3293 7 3.45963 0.12709 3.50796 2.84827 7 - -
3294 1.38629 1.38629 1.38629 1.38629
3295 0.03640 4.02455 4.02455 1.46634 0.26236 1.09861 0.40547
3296 8 3.45963 0.12709 3.50796 2.84827 8 - -
3297 1.38629 1.38629 1.38629 1.38629
3298 0.03640 4.02455 4.02455 1.46634 0.26236 1.09861 0.40547
3299 9 3.11192 2.60996 3.15918 0.17496 9 - -
3300 1.38629 1.38629 1.38629 1.38629
3301 0.03640 4.02455 4.02455 1.46634 0.26236 1.09861 0.40547
3302 10 2.96353 3.61108 0.11464 3.51818 10 - -
3303 1.38629 1.38629 1.38629 1.38629
3304 0.03640 4.02455 4.02455 1.46634 0.26236 1.09861 0.40547
3305 11 0.13889 3.40330 2.81687 3.30715 11 - -
3306 1.38629 1.38629 1.38629 1.38629
3307 0.03640 4.02455 4.02455 1.46634 0.26236 1.09861 0.40547
3308 12 0.13889 3.40330 2.81687 3.30715 12 - -
3309 1.38629 1.38629 1.38629 1.38629
3310 0.03640 4.02455 4.02455 1.46634 0.26236 1.09861 0.40547
3311 13 2.96353 3.61108 0.11464 3.51818 13 - -
3312 1.38629 1.38629 1.38629 1.38629
3313 0.03640 4.02455 4.02455 1.46634 0.26236 1.09861 0.40547
3314 14 3.11192 2.60996 3.15918 0.17496 14 - -
3315 1.38629 1.38629 1.38629 1.38629
3316 0.03640 4.02455 4.02455 1.46634 0.26236 1.09861 0.40547
3317 15 2.96353 3.61108 0.11464 3.51818 15 - -
3318 1.38629 1.38629 1.38629 1.38629
3319 0.03640 4.02455 4.02455 1.46634 0.26236 1.09861 0.40547
3320 16 0.13889 3.40330 2.81687 3.30715 16 - -
3321 1.38629 1.38629 1.38629 1.38629
3322 0.03640 4.02455 4.02455 1.46634 0.26236 1.09861 0.40547
3323 17 2.96353 3.61108 0.11464 3.51818 17 - -
3324 1.38629 1.38629 1.38629 1.38629
3325 0.03640 4.02455 4.02455 1.46634 0.26236 1.09861 0.40547
3326 18 2.96353 3.61108 0.11464 3.51818 18 - -
3327 1.38629 1.38629 1.38629 1.38629
3328 0.03640 4.02455 4.02455 1.46634 0.26236 1.09861 0.40547
3329 19 3.11192 2.60996 3.15918 0.17496 19 - -
3330 1.38629 1.38629 1.38629 1.38629
3331 0.03640 4.02455 4.02455 1.46634 0.26236 1.09861 0.40547
3332 20 0.13889 3.40330 2.81687 3.30715 20 - -
3333 1.38629 1.38629 1.38629 1.38629
3334 0.03640 4.02455 4.02455 1.46634 0.26236 1.09861 0.40547
3335 21 0.13889 3.40330 2.81687 3.30715 21 - -
3336 1.38629 1.38629 1.38629 1.38629
3337 0.03640 4.02455 4.02455 1.46634 0.26236 1.09861 0.40547
3338 22 2.96353 3.61108 0.11464 3.51818 22 - -
3339 1.38629 1.38629 1.38629 1.38629
3340 0.03640 4.02455 4.02455 1.46634 0.26236 1.09861 0.40547
3341 23 0.13889 3.40330 2.81687 3.30715 23 - -
3342 1.38629 1.38629 1.38629 1.38629
3343 0.03640 4.02455 4.02455 1.46634 0.26236 1.09861 0.40547
3344 24 2.96353 3.61108 0.11464 3.51818 24 - -
3345 1.38629 1.38629 1.38629 1.38629
3346 0.03640 4.02455 4.02455 1.46634 0.26236 1.09861 0.40547
3347 25 2.96353 3.61108 0.11464 3.51818 25 - -
3348 1.38629 1.38629 1.38629 1.38629
3349 0.03640 4.02455 4.02455 1.46634 0.26236 1.09861 0.40547
3350 26 0.13889 3.40330 2.81687 3.30715 26 - -
3351 1.38629 1.38629 1.38629 1.38629
3352 0.03640 4.02455 4.02455 1.46634 0.26236 1.09861 0.40547
3353 27 3.45963 0.12709 3.50796 2.84827 27 - -
3354 1.38629 1.38629 1.38629 1.38629
3355 0.03640 4.02455 4.02455 1.46634 0.26236 1.09861 0.40547
3356 28 3.45963 0.12709 3.50796 2.84827 28 - -
3357 1.38629 1.38629 1.38629 1.38629
3358 0.03640 4.02455 4.02455 1.46634 0.26236 1.09861 0.40547
3359 29 2.96353 3.61108 0.11464 3.51818 29 - -
3360 1.38629 1.38629 1.38629 1.38629
3361 0.03640 4.02455 4.02455 1.46634 0.26236 1.09861 0.40547
3362 30 2.96353 3.61108 0.11464 3.51818 30 - -
3363 1.38629 1.38629 1.38629 1.38629
3364 0.03640 4.02455 4.02455 1.46634 0.26236 1.09861 0.40547
3365 31 3.45963 0.12709 3.50796 2.84827 31 - -
3366 1.38629 1.38629 1.38629 1.38629
3367 0.03640 4.02455 4.02455 1.46634 0.26236 1.09861 0.40547
3368 32 3.45963 0.12709 3.50796 2.84827 32 - -
3369 1.38629 1.38629 1.38629 1.38629
3370 0.03640 4.02455 4.02455 1.46634 0.26236 1.09861 0.40547
3371 33 2.96353 3.61108 0.11464 3.51818 33 - -
3372 1.38629 1.38629 1.38629 1.38629
3373 0.03640 4.02455 4.02455 1.46634 0.26236 1.09861 0.40547
3374 34 0.13889 3.40330 2.81687 3.30715 34 - -
3375 1.38629 1.38629 1.38629 1.38629
3376 0.03640 4.02455 4.02455 1.46634 0.26236 1.09861 0.40547
3377 35 0.13889 3.40330 2.81687 3.30715 35 - -
3378 1.38629 1.38629 1.38629 1.38629
3379 0.03640 4.02455 4.02455 1.46634 0.26236 1.09861 0.40547
3380 36 3.11192 2.60996 3.15918 0.17496 36 - -
3381 1.38629 1.38629 1.38629 1.38629
3382 0.03640 4.02455 4.02455 1.46634 0.26236 1.09861 0.40547
3383 37 3.11192 2.60996 3.15918 0.17496 37 - -
3384 1.38629 1.38629 1.38629 1.38629
3385 0.03640 4.02455 4.02455 1.46634 0.26236 1.09861 0.40547
3386 38 3.11192 2.60996 3.15918 0.17496 38 - -
3387 1.38629 1.38629 1.38629 1.38629
3388 0.03640 4.02455 4.02455 1.46634 0.26236 1.09861 0.40547
3389 39 0.13889 3.40330 2.81687 3.30715 39 - -
3390 1.38629 1.38629 1.38629 1.38629
3391 0.03640 4.02455 4.02455 1.46634 0.26236 1.09861 0.40547
3392 40 0.13889 3.40330 2.81687 3.30715 40 - -
3393 1.38629 1.38629 1.38629 1.38629
3394 0.03640 4.02455 4.02455 1.46634 0.26236 1.09861 0.40547
3395 41 2.96353 3.61108 0.11464 3.51818 41 - -
3396 1.38629 1.38629 1.38629 1.38629
3397 0.03640 4.02455 4.02455 1.46634 0.26236 1.09861 0.40547
3398 42 3.45963 0.12709 3.50796 2.84827 42 - -
3399 1.38629 1.38629 1.38629 1.38629
3400 0.03640 4.02455 4.02455 1.46634 0.26236 1.09861 0.40547
3401 43 0.13889 3.40330 2.81687 3.30715 43 - -
3402 1.38629 1.38629 1.38629 1.38629
3403 0.03640 4.02455 4.02455 1.46634 0.26236 1.09861 0.40547
3404 44 3.11192 2.60996 3.15918 0.17496 44 - -
3405 1.38629 1.38629 1.38629 1.38629
3406 0.03640 4.02455 4.02455 1.46634 0.26236 1.09861 0.40547
3407 45 0.13889 3.40330 2.81687 3.30715 45 - -
3408 1.38629 1.38629 1.38629 1.38629
3409 0.01836 4.00652 * 1.46634 0.26236 0.00000 *
3410 //
3411 HMMER3/b [3.0 | March 2010]
3412 NAME 4_LSU_Rhizaria_4_LSU_start_seven_long
3413 LENG 45
3414 ALPH DNA
3415 RF no
3416 CS no
3417 MAP yes
3418 DATE Fri Jan 20 15:48:49 2012
3419 NSEQ 2
3420 EFFN 2.000000
3421 CKSUM 3237321859
3422 STATS LOCAL MSV -7.5995 0.72817
3423 STATS LOCAL VITERBI -8.1354 0.72817
3424 STATS LOCAL FORWARD -3.3775 0.72817
3425 HMM A C G T
3426 m->m m->i m->d i->m i->i d->m d->d
3427 COMPO 1.09658 1.59494 1.48795 1.43871
3428 1.38629 1.38629 1.38629 1.38629
3429 0.04879 3.73767 3.73767 1.46634 0.26236 0.00000 *
3430 1 2.81865 0.23582 2.88868 2.35662 1 - -
3431 1.38629 1.38629 1.38629 1.38629
3432 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
3433 2 0.23862 2.84929 2.43386 2.70756 2 - -
3434 1.38629 1.38629 1.38629 1.38629
3435 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
3436 3 0.23862 2.84929 2.43386 2.70756 3 - -
3437 1.38629 1.38629 1.38629 1.38629
3438 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
3439 4 0.23862 2.84929 2.43386 2.70756 4 - -
3440 1.38629 1.38629 1.38629 1.38629
3441 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
3442 5 2.53331 3.02441 0.20344 2.88069 5 - -
3443 1.38629 1.38629 1.38629 1.38629
3444 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
3445 6 0.23862 2.84929 2.43386 2.70756 6 - -
3446 1.38629 1.38629 1.38629 1.38629
3447 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
3448 7 2.57915 2.25909 2.64442 0.28946 7 - -
3449 1.38629 1.38629 1.38629 1.38629
3450 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
3451 8 2.81865 0.23582 2.88868 2.35662 8 - -
3452 1.38629 1.38629 1.38629 1.38629
3453 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
3454 9 2.57915 2.25909 2.64442 0.28946 9 - -
3455 1.38629 1.38629 1.38629 1.38629
3456 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
3457 10 2.81865 0.23582 2.88868 2.35662 10 - -
3458 1.38629 1.38629 1.38629 1.38629
3459 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
3460 11 0.23862 2.84929 2.43386 2.70756 11 - -
3461 1.38629 1.38629 1.38629 1.38629
3462 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
3463 12 0.23862 2.84929 2.43386 2.70756 12 - -
3464 1.38629 1.38629 1.38629 1.38629
3465 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
3466 13 0.23862 2.84929 2.43386 2.70756 13 - -
3467 1.38629 1.38629 1.38629 1.38629
3468 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
3469 14 2.57915 2.25909 2.64442 0.28946 14 - -
3470 1.38629 1.38629 1.38629 1.38629
3471 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
3472 15 2.53331 3.02441 0.20344 2.88069 15 - -
3473 1.38629 1.38629 1.38629 1.38629
3474 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
3475 16 0.23862 2.84929 2.43386 2.70756 16 - -
3476 1.38629 1.38629 1.38629 1.38629
3477 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
3478 17 2.53331 3.02441 0.20344 2.88069 17 - -
3479 1.38629 1.38629 1.38629 1.38629
3480 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
3481 18 2.53331 3.02441 0.20344 2.88069 18 - -
3482 1.38629 1.38629 1.38629 1.38629
3483 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
3484 19 2.57915 2.25909 2.64442 0.28946 19 - -
3485 1.38629 1.38629 1.38629 1.38629
3486 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
3487 20 0.23862 2.84929 2.43386 2.70756 20 - -
3488 1.38629 1.38629 1.38629 1.38629
3489 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
3490 21 2.53331 3.02441 0.20344 2.88069 21 - -
3491 1.38629 1.38629 1.38629 1.38629
3492 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
3493 22 2.53331 3.02441 0.20344 2.88069 22 - -
3494 1.38629 1.38629 1.38629 1.38629
3495 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
3496 23 0.23862 2.84929 2.43386 2.70756 23 - -
3497 1.38629 1.38629 1.38629 1.38629
3498 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
3499 24 2.57915 2.25909 2.64442 0.28946 24 - -
3500 1.38629 1.38629 1.38629 1.38629
3501 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
3502 25 2.57915 2.25909 2.64442 0.28946 25 - -
3503 1.38629 1.38629 1.38629 1.38629
3504 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
3505 26 0.23862 2.84929 2.43386 2.70756 26 - -
3506 1.38629 1.38629 1.38629 1.38629
3507 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
3508 27 2.81865 0.23582 2.88868 2.35662 27 - -
3509 1.38629 1.38629 1.38629 1.38629
3510 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
3511 28 2.81865 0.23582 2.88868 2.35662 28 - -
3512 1.38629 1.38629 1.38629 1.38629
3513 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
3514 29 2.81865 0.23582 2.88868 2.35662 29 - -
3515 1.38629 1.38629 1.38629 1.38629
3516 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
3517 30 2.53331 3.02441 0.20344 2.88069 30 - -
3518 1.38629 1.38629 1.38629 1.38629
3519 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
3520 31 2.81865 0.23582 2.88868 2.35662 31 - -
3521 1.38629 1.38629 1.38629 1.38629
3522 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
3523 32 2.57915 2.25909 2.64442 0.28946 32 - -
3524 1.38629 1.38629 1.38629 1.38629
3525 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
3526 33 2.53331 3.02441 0.20344 2.88069 33 - -
3527 1.38629 1.38629 1.38629 1.38629
3528 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
3529 34 0.23862 2.84929 2.43386 2.70756 34 - -
3530 1.38629 1.38629 1.38629 1.38629
3531 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
3532 35 0.23862 2.84929 2.43386 2.70756 35 - -
3533 1.38629 1.38629 1.38629 1.38629
3534 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
3535 36 2.57915 2.25909 2.64442 0.28946 36 - -
3536 1.38629 1.38629 1.38629 1.38629
3537 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
3538 37 2.57915 2.25909 2.64442 0.28946 37 - -
3539 1.38629 1.38629 1.38629 1.38629
3540 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
3541 38 2.57915 2.25909 2.64442 0.28946 38 - -
3542 1.38629 1.38629 1.38629 1.38629
3543 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
3544 39 0.23862 2.84929 2.43386 2.70756 39 - -
3545 1.38629 1.38629 1.38629 1.38629
3546 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
3547 40 0.23862 2.84929 2.43386 2.70756 40 - -
3548 1.38629 1.38629 1.38629 1.38629
3549 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
3550 41 2.53331 3.02441 0.20344 2.88069 41 - -
3551 1.38629 1.38629 1.38629 1.38629
3552 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
3553 42 2.81865 0.23582 2.88868 2.35662 42 - -
3554 1.38629 1.38629 1.38629 1.38629
3555 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
3556 43 0.23862 2.84929 2.43386 2.70756 43 - -
3557 1.38629 1.38629 1.38629 1.38629
3558 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
3559 44 2.57915 2.25909 2.64442 0.28946 44 - -
3560 1.38629 1.38629 1.38629 1.38629
3561 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
3562 45 0.23862 2.84929 2.43386 2.70756 45 - -
3563 1.38629 1.38629 1.38629 1.38629
3564 0.02469 3.71357 * 1.46634 0.26236 0.00000 *
3565 //
3566 HMMER3/b [3.0 | March 2010]
3567 NAME 4_LSU_Rhizaria_4_LSU_start_six_long
3568 LENG 45
3569 ALPH DNA
3570 RF no
3571 CS no
3572 MAP yes
3573 DATE Fri Jan 20 15:48:38 2012
3574 NSEQ 2
3575 EFFN 2.000000
3576 CKSUM 403866154
3577 STATS LOCAL MSV -7.4438 0.72795
3578 STATS LOCAL VITERBI -8.2841 0.72795
3579 STATS LOCAL FORWARD -3.4575 0.72795
3580 HMM A C G T
3581 m->m m->i m->d i->m i->i d->m d->d
3582 COMPO 1.40871 1.09677 1.57805 1.53611
3583 1.38629 1.38629 1.38629 1.38629
3584 0.04879 3.73767 3.73767 1.46634 0.26236 0.00000 *
3585 1 2.81865 0.23582 2.88868 2.35662 1 - -
3586 1.38629 1.38629 1.38629 1.38629
3587 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
3588 2 2.81865 0.23582 2.88868 2.35662 2 - -
3589 1.38629 1.38629 1.38629 1.38629
3590 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
3591 3 2.53331 3.02441 0.20344 2.88069 3 - -
3592 1.38629 1.38629 1.38629 1.38629
3593 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
3594 4 2.81865 0.23582 2.88868 2.35662 4 - -
3595 1.38629 1.38629 1.38629 1.38629
3596 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
3597 5 2.53331 3.02441 0.20344 2.88069 5 - -
3598 1.38629 1.38629 1.38629 1.38629
3599 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
3600 6 2.57915 2.25909 2.64442 0.28946 6 - -
3601 1.38629 1.38629 1.38629 1.38629
3602 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
3603 7 2.81865 0.23582 2.88868 2.35662 7 - -
3604 1.38629 1.38629 1.38629 1.38629
3605 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
3606 8 2.81865 0.23582 2.88868 2.35662 8 - -
3607 1.38629 1.38629 1.38629 1.38629
3608 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
3609 9 2.57915 2.25909 2.64442 0.28946 9 - -
3610 1.38629 1.38629 1.38629 1.38629
3611 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
3612 10 2.81865 0.23582 2.88868 2.35662 10 - -
3613 1.38629 1.38629 1.38629 1.38629
3614 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
3615 11 2.81865 0.23582 2.88868 2.35662 11 - -
3616 1.38629 1.38629 1.38629 1.38629
3617 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
3618 12 2.53331 3.02441 0.20344 2.88069 12 - -
3619 1.38629 1.38629 1.38629 1.38629
3620 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
3621 13 2.57915 2.25909 2.64442 0.28946 13 - -
3622 1.38629 1.38629 1.38629 1.38629
3623 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
3624 14 2.81865 0.23582 2.88868 2.35662 14 - -
3625 1.38629 1.38629 1.38629 1.38629
3626 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
3627 15 2.81865 0.23582 2.88868 2.35662 15 - -
3628 1.38629 1.38629 1.38629 1.38629
3629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
3630 16 0.23862 2.84929 2.43386 2.70756 16 - -
3631 1.38629 1.38629 1.38629 1.38629
3632 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
3633 17 2.57915 2.25909 2.64442 0.28946 17 - -
3634 1.38629 1.38629 1.38629 1.38629
3635 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
3636 18 0.23862 2.84929 2.43386 2.70756 18 - -
3637 1.38629 1.38629 1.38629 1.38629
3638 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
3639 19 2.81865 0.23582 2.88868 2.35662 19 - -
3640 1.38629 1.38629 1.38629 1.38629
3641 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
3642 20 0.23862 2.84929 2.43386 2.70756 20 - -
3643 1.38629 1.38629 1.38629 1.38629
3644 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
3645 21 0.23862 2.84929 2.43386 2.70756 21 - -
3646 1.38629 1.38629 1.38629 1.38629
3647 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
3648 22 2.53331 3.02441 0.20344 2.88069 22 - -
3649 1.38629 1.38629 1.38629 1.38629
3650 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
3651 23 2.53331 3.02441 0.20344 2.88069 23 - -
3652 1.38629 1.38629 1.38629 1.38629
3653 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
3654 24 2.81865 0.23582 2.88868 2.35662 24 - -
3655 1.38629 1.38629 1.38629 1.38629
3656 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
3657 25 2.57915 2.25909 2.64442 0.28946 25 - -
3658 1.38629 1.38629 1.38629 1.38629
3659 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
3660 26 0.23862 2.84929 2.43386 2.70756 26 - -
3661 1.38629 1.38629 1.38629 1.38629
3662 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
3663 27 2.81865 0.23582 2.88868 2.35662 27 - -
3664 1.38629 1.38629 1.38629 1.38629
3665 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
3666 28 2.81865 0.23582 2.88868 2.35662 28 - -
3667 1.38629 1.38629 1.38629 1.38629
3668 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
3669 29 2.81865 0.23582 2.88868 2.35662 29 - -
3670 1.38629 1.38629 1.38629 1.38629
3671 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
3672 30 2.53331 3.02441 0.20344 2.88069 30 - -
3673 1.38629 1.38629 1.38629 1.38629
3674 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
3675 31 2.81865 0.23582 2.88868 2.35662 31 - -
3676 1.38629 1.38629 1.38629 1.38629
3677 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
3678 32 2.57915 2.25909 2.64442 0.28946 32 - -
3679 1.38629 1.38629 1.38629 1.38629
3680 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
3681 33 2.53331 3.02441 0.20344 2.88069 33 - -
3682 1.38629 1.38629 1.38629 1.38629
3683 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
3684 34 0.23862 2.84929 2.43386 2.70756 34 - -
3685 1.38629 1.38629 1.38629 1.38629
3686 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
3687 35 0.23862 2.84929 2.43386 2.70756 35 - -
3688 1.38629 1.38629 1.38629 1.38629
3689 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
3690 36 2.81865 0.23582 2.88868 2.35662 36 - -
3691 1.38629 1.38629 1.38629 1.38629
3692 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
3693 37 2.57915 2.25909 2.64442 0.28946 37 - -
3694 1.38629 1.38629 1.38629 1.38629
3695 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
3696 38 2.57915 2.25909 2.64442 0.28946 38 - -
3697 1.38629 1.38629 1.38629 1.38629
3698 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
3699 39 0.23862 2.84929 2.43386 2.70756 39 - -
3700 1.38629 1.38629 1.38629 1.38629
3701 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
3702 40 0.23862 2.84929 2.43386 2.70756 40 - -
3703 1.38629 1.38629 1.38629 1.38629
3704 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
3705 41 2.53331 3.02441 0.20344 2.88069 41 - -
3706 1.38629 1.38629 1.38629 1.38629
3707 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
3708 42 2.81865 0.23582 2.88868 2.35662 42 - -
3709 1.38629 1.38629 1.38629 1.38629
3710 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
3711 43 0.23862 2.84929 2.43386 2.70756 43 - -
3712 1.38629 1.38629 1.38629 1.38629
3713 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
3714 44 2.57915 2.25909 2.64442 0.28946 44 - -
3715 1.38629 1.38629 1.38629 1.38629
3716 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
3717 45 0.23862 2.84929 2.43386 2.70756 45 - -
3718 1.38629 1.38629 1.38629 1.38629
3719 0.02469 3.71357 * 1.46634 0.26236 0.00000 *
3720 //
3721 HMMER3/b [3.0 | March 2010]
3722 NAME 4_LSU_Rhizaria_4_LSU_start_three_long
3723 LENG 45
3724 ALPH DNA
3725 RF no
3726 CS no
3727 MAP yes
3728 DATE Fri Jan 20 15:48:01 2012
3729 NSEQ 7
3730 EFFN 3.387207
3731 CKSUM 685879422
3732 STATS LOCAL MSV -7.6313 0.71931
3733 STATS LOCAL VITERBI -7.5788 0.71931
3734 STATS LOCAL FORWARD -4.0483 0.71931
3735 HMM A C G T
3736 m->m m->i m->d i->m i->i d->m d->d
3737 COMPO 1.10662 1.52111 1.60238 1.38853
3738 1.38629 1.38629 1.38629 1.38629
3739 0.03645 4.02306 4.02306 1.46634 0.26236 0.00000 *
3740 1 3.10929 2.60829 3.15665 0.17538 1 - -
3741 1.38629 1.38629 1.38629 1.38629
3742 0.03645 4.02306 4.02306 1.46634 0.26236 1.09861 0.40547
3743 2 3.45664 0.12744 3.50510 2.84610 2 - -
3744 1.38629 1.38629 1.38629 1.38629
3745 0.03645 4.02306 4.02306 1.46634 0.26236 1.09861 0.40547
3746 3 3.10929 2.60829 3.15665 0.17538 3 - -
3747 1.38629 1.38629 1.38629 1.38629
3748 0.03645 4.02306 4.02306 1.46634 0.26236 1.09861 0.40547
3749 4 0.13923 3.40070 2.81518 3.30431 4 - -
3750 1.38629 1.38629 1.38629 1.38629
3751 0.03645 4.02306 4.02306 1.46634 0.26236 1.09861 0.40547
3752 5 2.96173 3.60845 0.11492 3.51528 5 - -
3753 1.38629 1.38629 1.38629 1.38629
3754 0.03645 4.02306 4.02306 1.46634 0.26236 1.09861 0.40547
3755 6 0.13923 3.40070 2.81518 3.30431 6 - -
3756 1.38629 1.38629 1.38629 1.38629
3757 0.03645 4.02306 4.02306 1.46634 0.26236 1.09861 0.40547
3758 7 3.10929 2.60829 3.15665 0.17538 7 - -
3759 1.38629 1.38629 1.38629 1.38629
3760 0.03645 4.02306 4.02306 1.46634 0.26236 1.09861 0.40547
3761 8 3.45664 0.12744 3.50510 2.84610 8 - -
3762 1.38629 1.38629 1.38629 1.38629
3763 0.03645 4.02306 4.02306 1.46634 0.26236 1.09861 0.40547
3764 9 3.10929 2.60829 3.15665 0.17538 9 - -
3765 1.38629 1.38629 1.38629 1.38629
3766 0.03645 4.02306 4.02306 1.46634 0.26236 1.09861 0.40547
3767 10 3.45664 0.12744 3.50510 2.84610 10 - -
3768 1.38629 1.38629 1.38629 1.38629
3769 0.03645 4.02306 4.02306 1.46634 0.26236 1.09861 0.40547
3770 11 0.13923 3.40070 2.81518 3.30431 11 - -
3771 1.38629 1.38629 1.38629 1.38629
3772 0.03645 4.02306 4.02306 1.46634 0.26236 1.09861 0.40547
3773 12 0.13923 3.40070 2.81518 3.30431 12 - -
3774 1.38629 1.38629 1.38629 1.38629
3775 0.03645 4.02306 4.02306 1.46634 0.26236 1.09861 0.40547
3776 13 0.13923 3.40070 2.81518 3.30431 13 - -
3777 1.38629 1.38629 1.38629 1.38629
3778 0.03645 4.02306 4.02306 1.46634 0.26236 1.09861 0.40547
3779 14 3.10929 2.60829 3.15665 0.17538 14 - -
3780 1.38629 1.38629 1.38629 1.38629
3781 0.03645 4.02306 4.02306 1.46634 0.26236 1.09861 0.40547
3782 15 2.96173 3.60845 0.11492 3.51528 15 - -
3783 1.38629 1.38629 1.38629 1.38629
3784 0.03645 4.02306 4.02306 1.46634 0.26236 1.09861 0.40547
3785 16 0.13923 3.40070 2.81518 3.30431 16 - -
3786 1.38629 1.38629 1.38629 1.38629
3787 0.03645 4.02306 4.02306 1.46634 0.26236 1.09861 0.40547
3788 17 2.96173 3.60845 0.11492 3.51528 17 - -
3789 1.38629 1.38629 1.38629 1.38629
3790 0.03645 4.02306 4.02306 1.46634 0.26236 1.09861 0.40547
3791 18 2.96173 3.60845 0.11492 3.51528 18 - -
3792 1.38629 1.38629 1.38629 1.38629
3793 0.03645 4.02306 4.02306 1.46634 0.26236 1.09861 0.40547
3794 19 3.10929 2.60829 3.15665 0.17538 19 - -
3795 1.38629 1.38629 1.38629 1.38629
3796 0.03645 4.02306 4.02306 1.46634 0.26236 1.09861 0.40547
3797 20 0.13923 3.40070 2.81518 3.30431 20 - -
3798 1.38629 1.38629 1.38629 1.38629
3799 0.03645 4.02306 4.02306 1.46634 0.26236 1.09861 0.40547
3800 21 0.13923 3.40070 2.81518 3.30431 21 - -
3801 1.38629 1.38629 1.38629 1.38629
3802 0.03645 4.02306 4.02306 1.46634 0.26236 1.09861 0.40547
3803 22 2.96173 3.60845 0.11492 3.51528 22 - -
3804 1.38629 1.38629 1.38629 1.38629
3805 0.03645 4.02306 4.02306 1.46634 0.26236 1.09861 0.40547
3806 23 0.13923 3.40070 2.81518 3.30431 23 - -
3807 1.38629 1.38629 1.38629 1.38629
3808 0.03645 4.02306 4.02306 1.46634 0.26236 1.09861 0.40547
3809 24 3.45664 0.12744 3.50510 2.84610 24 - -
3810 1.38629 1.38629 1.38629 1.38629
3811 0.03645 4.02306 4.02306 1.46634 0.26236 1.09861 0.40547
3812 25 3.10929 2.60829 3.15665 0.17538 25 - -
3813 1.38629 1.38629 1.38629 1.38629
3814 0.03645 4.02306 4.02306 1.46634 0.26236 1.09861 0.40547
3815 26 0.13923 3.40070 2.81518 3.30431 26 - -
3816 1.38629 1.38629 1.38629 1.38629
3817 0.03645 4.02306 4.02306 1.46634 0.26236 1.09861 0.40547
3818 27 3.45664 0.12744 3.50510 2.84610 27 - -
3819 1.38629 1.38629 1.38629 1.38629
3820 0.03645 4.02306 4.02306 1.46634 0.26236 1.09861 0.40547
3821 28 3.45664 0.12744 3.50510 2.84610 28 - -
3822 1.38629 1.38629 1.38629 1.38629
3823 0.03645 4.02306 4.02306 1.46634 0.26236 1.09861 0.40547
3824 29 3.45664 0.12744 3.50510 2.84610 29 - -
3825 1.38629 1.38629 1.38629 1.38629
3826 0.03645 4.02306 4.02306 1.46634 0.26236 1.09861 0.40547
3827 30 2.96173 3.60845 0.11492 3.51528 30 - -
3828 1.38629 1.38629 1.38629 1.38629
3829 0.03645 4.02306 4.02306 1.46634 0.26236 1.09861 0.40547
3830 31 3.45664 0.12744 3.50510 2.84610 31 - -
3831 1.38629 1.38629 1.38629 1.38629
3832 0.03645 4.02306 4.02306 1.46634 0.26236 1.09861 0.40547
3833 32 3.10929 2.60829 3.15665 0.17538 32 - -
3834 1.38629 1.38629 1.38629 1.38629
3835 0.03645 4.02306 4.02306 1.46634 0.26236 1.09861 0.40547
3836 33 2.96173 3.60845 0.11492 3.51528 33 - -
3837 1.38629 1.38629 1.38629 1.38629
3838 0.03645 4.02306 4.02306 1.46634 0.26236 1.09861 0.40547
3839 34 0.13923 3.40070 2.81518 3.30431 34 - -
3840 1.38629 1.38629 1.38629 1.38629
3841 0.03645 4.02306 4.02306 1.46634 0.26236 1.09861 0.40547
3842 35 0.13923 3.40070 2.81518 3.30431 35 - -
3843 1.38629 1.38629 1.38629 1.38629
3844 0.03645 4.02306 4.02306 1.46634 0.26236 1.09861 0.40547
3845 36 2.56748 1.47198 2.63418 0.47478 36 - -
3846 1.38629 1.38629 1.38629 1.38629
3847 0.03645 4.02306 4.02306 1.46634 0.26236 1.09861 0.40547
3848 37 3.10929 2.60829 3.15665 0.17538 37 - -
3849 1.38629 1.38629 1.38629 1.38629
3850 0.03645 4.02306 4.02306 1.46634 0.26236 1.09861 0.40547
3851 38 3.10929 2.60829 3.15665 0.17538 38 - -
3852 1.38629 1.38629 1.38629 1.38629
3853 0.03645 4.02306 4.02306 1.46634 0.26236 1.09861 0.40547
3854 39 0.13923 3.40070 2.81518 3.30431 39 - -
3855 1.38629 1.38629 1.38629 1.38629
3856 0.03645 4.02306 4.02306 1.46634 0.26236 1.09861 0.40547
3857 40 0.13923 3.40070 2.81518 3.30431 40 - -
3858 1.38629 1.38629 1.38629 1.38629
3859 0.03645 4.02306 4.02306 1.46634 0.26236 1.09861 0.40547
3860 41 2.96173 3.60845 0.11492 3.51528 41 - -
3861 1.38629 1.38629 1.38629 1.38629
3862 0.03645 4.02306 4.02306 1.46634 0.26236 1.09861 0.40547
3863 42 3.45664 0.12744 3.50510 2.84610 42 - -
3864 1.38629 1.38629 1.38629 1.38629
3865 0.03645 4.02306 4.02306 1.46634 0.26236 1.09861 0.40547
3866 43 0.13923 3.40070 2.81518 3.30431 43 - -
3867 1.38629 1.38629 1.38629 1.38629
3868 0.03645 4.02306 4.02306 1.46634 0.26236 1.09861 0.40547
3869 44 3.10929 2.60829 3.15665 0.17538 44 - -
3870 1.38629 1.38629 1.38629 1.38629
3871 0.03645 4.02306 4.02306 1.46634 0.26236 1.09861 0.40547
3872 45 0.13923 3.40070 2.81518 3.30431 45 - -
3873 1.38629 1.38629 1.38629 1.38629
3874 0.01839 4.00500 * 1.46634 0.26236 0.00000 *
3875 //
3876 HMMER3/b [3.0 | March 2010]
3877 NAME 4_LSU_Rhizaria_4_LSU_start_two_long
3878 LENG 45
3879 ALPH DNA
3880 RF no
3881 CS no
3882 MAP yes
3883 DATE Fri Jan 20 15:47:48 2012
3884 NSEQ 14
3885 EFFN 3.359863
3886 CKSUM 3152799616
3887 STATS LOCAL MSV -8.0137 0.71932
3888 STATS LOCAL VITERBI -7.4927 0.71932
3889 STATS LOCAL FORWARD -4.0641 0.71932
3890 HMM A C G T
3891 m->m m->i m->d i->m i->i d->m d->d
3892 COMPO 1.05417 1.49407 1.51699 1.57170
3893 1.38629 1.38629 1.38629 1.38629
3894 0.03664 4.01816 4.01816 1.46634 0.26236 0.00000 *
3895 1 0.14034 3.39209 2.80960 3.29488 1 - -
3896 1.38629 1.38629 1.38629 1.38629
3897 0.03664 4.01816 4.01816 1.46634 0.26236 1.09861 0.40547
3898 2 3.44674 0.12859 3.49562 2.83891 2 - -
3899 1.38629 1.38629 1.38629 1.38629
3900 0.03664 4.01816 4.01816 1.46634 0.26236 1.09861 0.40547
3901 3 0.14034 3.39209 2.80960 3.29488 3 - -
3902 1.38629 1.38629 1.38629 1.38629
3903 0.03664 4.01816 4.01816 1.46634 0.26236 1.09861 0.40547
3904 4 0.14034 3.39209 2.80960 3.29488 4 - -
3905 1.38629 1.38629 1.38629 1.38629
3906 0.03664 4.01816 4.01816 1.46634 0.26236 1.09861 0.40547
3907 5 2.95576 3.59975 0.11586 3.50566 5 - -
3908 1.38629 1.38629 1.38629 1.38629
3909 0.03664 4.01816 4.01816 1.46634 0.26236 1.09861 0.40547
3910 6 0.14034 3.39209 2.80960 3.29488 6 - -
3911 1.38629 1.38629 1.38629 1.38629
3912 0.03664 4.01816 4.01816 1.46634 0.26236 1.09861 0.40547
3913 7 3.10057 2.60274 3.14826 0.17676 7 - -
3914 1.38629 1.38629 1.38629 1.38629
3915 0.03664 4.01816 4.01816 1.46634 0.26236 1.09861 0.40547
3916 8 3.44674 0.12859 3.49562 2.83891 8 - -
3917 1.38629 1.38629 1.38629 1.38629
3918 0.03664 4.01816 4.01816 1.46634 0.26236 1.09861 0.40547
3919 9 3.10057 2.60274 3.14826 0.17676 9 - -
3920 1.38629 1.38629 1.38629 1.38629
3921 0.03664 4.01816 4.01816 1.46634 0.26236 1.09861 0.40547
3922 10 3.44674 0.12859 3.49562 2.83891 10 - -
3923 1.38629 1.38629 1.38629 1.38629
3924 0.03664 4.01816 4.01816 1.46634 0.26236 1.09861 0.40547
3925 11 0.14034 3.39209 2.80960 3.29488 11 - -
3926 1.38629 1.38629 1.38629 1.38629
3927 0.03664 4.01816 4.01816 1.46634 0.26236 1.09861 0.40547
3928 12 2.95576 3.59975 0.11586 3.50566 12 - -
3929 1.38629 1.38629 1.38629 1.38629
3930 0.03664 4.01816 4.01816 1.46634 0.26236 1.09861 0.40547
3931 13 0.14034 3.39209 2.80960 3.29488 13 - -
3932 1.38629 1.38629 1.38629 1.38629
3933 0.03664 4.01816 4.01816 1.46634 0.26236 1.09861 0.40547
3934 14 3.10057 2.60274 3.14826 0.17676 14 - -
3935 1.38629 1.38629 1.38629 1.38629
3936 0.03664 4.01816 4.01816 1.46634 0.26236 1.09861 0.40547
3937 15 2.95576 3.59975 0.11586 3.50566 15 - -
3938 1.38629 1.38629 1.38629 1.38629
3939 0.03664 4.01816 4.01816 1.46634 0.26236 1.09861 0.40547
3940 16 0.14034 3.39209 2.80960 3.29488 16 - -
3941 1.38629 1.38629 1.38629 1.38629
3942 0.03664 4.01816 4.01816 1.46634 0.26236 1.09861 0.40547
3943 17 2.95576 3.59975 0.11586 3.50566 17 - -
3944 1.38629 1.38629 1.38629 1.38629
3945 0.03664 4.01816 4.01816 1.46634 0.26236 1.09861 0.40547
3946 18 2.95576 3.59975 0.11586 3.50566 18 - -
3947 1.38629 1.38629 1.38629 1.38629
3948 0.03664 4.01816 4.01816 1.46634 0.26236 1.09861 0.40547
3949 19 3.10057 2.60274 3.14826 0.17676 19 - -
3950 1.38629 1.38629 1.38629 1.38629
3951 0.03664 4.01816 4.01816 1.46634 0.26236 1.09861 0.40547
3952 20 0.14034 3.39209 2.80960 3.29488 20 - -
3953 1.38629 1.38629 1.38629 1.38629
3954 0.03664 4.01816 4.01816 1.46634 0.26236 1.09861 0.40547
3955 21 0.14034 3.39209 2.80960 3.29488 21 - -
3956 1.38629 1.38629 1.38629 1.38629
3957 0.03664 4.01816 4.01816 1.46634 0.26236 1.09861 0.40547
3958 22 2.95576 3.59975 0.11586 3.50566 22 - -
3959 1.38629 1.38629 1.38629 1.38629
3960 0.03664 4.01816 4.01816 1.46634 0.26236 1.09861 0.40547
3961 23 0.14034 3.39209 2.80960 3.29488 23 - -
3962 1.38629 1.38629 1.38629 1.38629
3963 0.03664 4.01816 4.01816 1.46634 0.26236 1.09861 0.40547
3964 24 2.88818 0.29626 2.95301 1.90684 24 - -
3965 1.38629 1.38629 1.38629 1.38629
3966 0.03664 4.01816 4.01816 1.46634 0.26236 1.09861 0.40547
3967 25 3.10057 2.60274 3.14826 0.17676 25 - -
3968 1.38629 1.38629 1.38629 1.38629
3969 0.03664 4.01816 4.01816 1.46634 0.26236 1.09861 0.40547
3970 26 0.14034 3.39209 2.80960 3.29488 26 - -
3971 1.38629 1.38629 1.38629 1.38629
3972 0.03664 4.01816 4.01816 1.46634 0.26236 1.09861 0.40547
3973 27 3.44674 0.12859 3.49562 2.83891 27 - -
3974 1.38629 1.38629 1.38629 1.38629
3975 0.03664 4.01816 4.01816 1.46634 0.26236 1.09861 0.40547
3976 28 3.44674 0.12859 3.49562 2.83891 28 - -
3977 1.38629 1.38629 1.38629 1.38629
3978 0.03664 4.01816 4.01816 1.46634 0.26236 1.09861 0.40547
3979 29 3.44674 0.12859 3.49562 2.83891 29 - -
3980 1.38629 1.38629 1.38629 1.38629
3981 0.03664 4.01816 4.01816 1.46634 0.26236 1.09861 0.40547
3982 30 2.95576 3.59975 0.11586 3.50566 30 - -
3983 1.38629 1.38629 1.38629 1.38629
3984 0.03664 4.01816 4.01816 1.46634 0.26236 1.09861 0.40547
3985 31 3.44674 0.12859 3.49562 2.83891 31 - -
3986 1.38629 1.38629 1.38629 1.38629
3987 0.03664 4.01816 4.01816 1.46634 0.26236 1.09861 0.40547
3988 32 2.88818 0.29626 2.95301 1.90684 32 - -
3989 1.38629 1.38629 1.38629 1.38629
3990 0.03664 4.01816 4.01816 1.46634 0.26236 1.09861 0.40547
3991 33 2.95576 3.59975 0.11586 3.50566 33 - -
3992 1.38629 1.38629 1.38629 1.38629
3993 0.03664 4.01816 4.01816 1.46634 0.26236 1.09861 0.40547
3994 34 0.14034 3.39209 2.80960 3.29488 34 - -
3995 1.38629 1.38629 1.38629 1.38629
3996 0.03664 4.01816 4.01816 1.46634 0.26236 1.09861 0.40547
3997 35 0.14034 3.39209 2.80960 3.29488 35 - -
3998 1.38629 1.38629 1.38629 1.38629
3999 0.03664 4.01816 4.01816 1.46634 0.26236 1.09861 0.40547
4000 36 3.10057 2.60274 3.14826 0.17676 36 - -
4001 1.38629 1.38629 1.38629 1.38629
4002 0.03664 4.01816 4.01816 1.46634 0.26236 1.09861 0.40547
4003 37 3.10057 2.60274 3.14826 0.17676 37 - -
4004 1.38629 1.38629 1.38629 1.38629
4005 0.03664 4.01816 4.01816 1.46634 0.26236 1.09861 0.40547
4006 38 3.10057 2.60274 3.14826 0.17676 38 - -
4007 1.38629 1.38629 1.38629 1.38629
4008 0.03664 4.01816 4.01816 1.46634 0.26236 1.09861 0.40547
4009 39 0.14034 3.39209 2.80960 3.29488 39 - -
4010 1.38629 1.38629 1.38629 1.38629
4011 0.03664 4.01816 4.01816 1.46634 0.26236 1.09861 0.40547
4012 40 0.14034 3.39209 2.80960 3.29488 40 - -
4013 1.38629 1.38629 1.38629 1.38629
4014 0.03664 4.01816 4.01816 1.46634 0.26236 1.09861 0.40547
4015 41 2.95576 3.59975 0.11586 3.50566 41 - -
4016 1.38629 1.38629 1.38629 1.38629
4017 0.03664 4.01816 4.01816 1.46634 0.26236 1.09861 0.40547
4018 42 3.44674 0.12859 3.49562 2.83891 42 - -
4019 1.38629 1.38629 1.38629 1.38629
4020 0.03664 4.01816 4.01816 1.46634 0.26236 1.09861 0.40547
4021 43 0.14034 3.39209 2.80960 3.29488 43 - -
4022 1.38629 1.38629 1.38629 1.38629
4023 0.03664 4.01816 4.01816 1.46634 0.26236 1.09861 0.40547
4024 44 3.10057 2.60274 3.14826 0.17676 44 - -
4025 1.38629 1.38629 1.38629 1.38629
4026 0.03664 4.01816 4.01816 1.46634 0.26236 1.09861 0.40547
4027 45 0.14034 3.39209 2.80960 3.29488 45 - -
4028 1.38629 1.38629 1.38629 1.38629
4029 0.01849 4.00001 * 1.46634 0.26236 0.00000 *
4030 //
4031 HMMER3/b [3.0 | March 2010]
4032 NAME 4_LSU_Rhizaria_4_LSU_start_eight_long
4033 LENG 45
4034 ALPH DNA
4035 RF no
4036 CS no
4037 MAP yes
4038 DATE Sat Jan 7 01:12:25 2012
4039 NSEQ 3
4040 EFFN 3.000000
4041 CKSUM 731854382
4042 STATS LOCAL MSV -8.0759 0.72023
4043 STATS LOCAL VITERBI -7.8499 0.72023
4044 STATS LOCAL FORWARD -3.7973 0.72023
4045 HMM A C G T
4046 m->m m->i m->d i->m i->i d->m d->d
4047 COMPO 1.28009 1.32699 1.44837 1.50615
4048 1.38629 1.38629 1.38629 1.38629
4049 0.03922 3.95124 3.95124 1.46634 0.26236 0.00000 *
4050 1 3.30705 0.14631 3.36166 2.73626 1 - -
4051 1.38629 1.38629 1.38629 1.38629
4052 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
4053 2 0.15719 3.27118 2.73043 3.16274 2 - -
4054 1.38629 1.38629 1.38629 1.38629
4055 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
4056 3 3.30705 0.14631 3.36166 2.73626 3 - -
4057 1.38629 1.38629 1.38629 1.38629
4058 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
4059 4 2.86982 3.47591 0.13017 3.36931 4 - -
4060 1.38629 1.38629 1.38629 1.38629
4061 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
4062 5 2.97980 2.52563 3.03204 0.19727 5 - -
4063 1.38629 1.38629 1.38629 1.38629
4064 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
4065 6 3.30705 0.14631 3.36166 2.73626 6 - -
4066 1.38629 1.38629 1.38629 1.38629
4067 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
4068 7 3.30705 0.14631 3.36166 2.73626 7 - -
4069 1.38629 1.38629 1.38629 1.38629
4070 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
4071 8 2.97980 2.52563 3.03204 0.19727 8 - -
4072 1.38629 1.38629 1.38629 1.38629
4073 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
4074 9 2.86982 3.47591 0.13017 3.36931 9 - -
4075 1.38629 1.38629 1.38629 1.38629
4076 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
4077 10 3.30705 0.14631 3.36166 2.73626 10 - -
4078 1.38629 1.38629 1.38629 1.38629
4079 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
4080 11 2.86982 3.47591 0.13017 3.36931 11 - -
4081 1.38629 1.38629 1.38629 1.38629
4082 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
4083 12 3.30705 0.14631 3.36166 2.73626 12 - -
4084 1.38629 1.38629 1.38629 1.38629
4085 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
4086 13 2.97980 2.52563 3.03204 0.19727 13 - -
4087 1.38629 1.38629 1.38629 1.38629
4088 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
4089 14 0.15719 3.27118 2.73043 3.16274 14 - -
4090 1.38629 1.38629 1.38629 1.38629
4091 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
4092 15 2.86982 3.47591 0.13017 3.36931 15 - -
4093 1.38629 1.38629 1.38629 1.38629
4094 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
4095 16 0.15719 3.27118 2.73043 3.16274 16 - -
4096 1.38629 1.38629 1.38629 1.38629
4097 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
4098 17 2.86982 3.47591 0.13017 3.36931 17 - -
4099 1.38629 1.38629 1.38629 1.38629
4100 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
4101 18 2.97980 2.52563 3.03204 0.19727 18 - -
4102 1.38629 1.38629 1.38629 1.38629
4103 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
4104 19 0.15719 3.27118 2.73043 3.16274 19 - -
4105 1.38629 1.38629 1.38629 1.38629
4106 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
4107 20 0.15719 3.27118 2.73043 3.16274 20 - -
4108 1.38629 1.38629 1.38629 1.38629
4109 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
4110 21 2.86982 3.47591 0.13017 3.36931 21 - -
4111 1.38629 1.38629 1.38629 1.38629
4112 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
4113 22 0.15719 3.27118 2.73043 3.16274 22 - -
4114 1.38629 1.38629 1.38629 1.38629
4115 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
4116 23 2.86982 3.47591 0.13017 3.36931 23 - -
4117 1.38629 1.38629 1.38629 1.38629
4118 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
4119 24 2.97980 2.52563 3.03204 0.19727 24 - -
4120 1.38629 1.38629 1.38629 1.38629
4121 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
4122 25 0.15719 3.27118 2.73043 3.16274 25 - -
4123 1.38629 1.38629 1.38629 1.38629
4124 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
4125 26 3.30705 0.14631 3.36166 2.73626 26 - -
4126 1.38629 1.38629 1.38629 1.38629
4127 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
4128 27 3.30705 0.14631 3.36166 2.73626 27 - -
4129 1.38629 1.38629 1.38629 1.38629
4130 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
4131 28 3.30705 0.14631 3.36166 2.73626 28 - -
4132 1.38629 1.38629 1.38629 1.38629
4133 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
4134 29 2.86982 3.47591 0.13017 3.36931 29 - -
4135 1.38629 1.38629 1.38629 1.38629
4136 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
4137 30 3.30705 0.14631 3.36166 2.73626 30 - -
4138 1.38629 1.38629 1.38629 1.38629
4139 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
4140 31 2.97980 2.52563 3.03204 0.19727 31 - -
4141 1.38629 1.38629 1.38629 1.38629
4142 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
4143 32 2.86982 3.47591 0.13017 3.36931 32 - -
4144 1.38629 1.38629 1.38629 1.38629
4145 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
4146 33 0.15719 3.27118 2.73043 3.16274 33 - -
4147 1.38629 1.38629 1.38629 1.38629
4148 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
4149 34 0.15719 3.27118 2.73043 3.16274 34 - -
4150 1.38629 1.38629 1.38629 1.38629
4151 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
4152 35 3.30705 0.14631 3.36166 2.73626 35 - -
4153 1.38629 1.38629 1.38629 1.38629
4154 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
4155 36 2.97980 2.52563 3.03204 0.19727 36 - -
4156 1.38629 1.38629 1.38629 1.38629
4157 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
4158 37 2.97980 2.52563 3.03204 0.19727 37 - -
4159 1.38629 1.38629 1.38629 1.38629
4160 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
4161 38 0.15719 3.27118 2.73043 3.16274 38 - -
4162 1.38629 1.38629 1.38629 1.38629
4163 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
4164 39 0.15719 3.27118 2.73043 3.16274 39 - -
4165 1.38629 1.38629 1.38629 1.38629
4166 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
4167 40 2.86982 3.47591 0.13017 3.36931 40 - -
4168 1.38629 1.38629 1.38629 1.38629
4169 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
4170 41 3.30705 0.14631 3.36166 2.73626 41 - -
4171 1.38629 1.38629 1.38629 1.38629
4172 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
4173 42 0.15719 3.27118 2.73043 3.16274 42 - -
4174 1.38629 1.38629 1.38629 1.38629
4175 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
4176 43 2.97980 2.52563 3.03204 0.19727 43 - -
4177 1.38629 1.38629 1.38629 1.38629
4178 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
4179 44 0.15719 3.27118 2.73043 3.16274 44 - -
4180 1.38629 1.38629 1.38629 1.38629
4181 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
4182 45 2.97980 2.52563 3.03204 0.19727 45 - -
4183 1.38629 1.38629 1.38629 1.38629
4184 0.01980 3.93183 * 1.46634 0.26236 0.00000 *
4185 //
4186 HMMER3/b [3.0 | March 2010]
4187 NAME 4_LSU_Rhizaria_4_LSU_start_eleven_long
4188 LENG 45
4189 ALPH DNA
4190 RF no
4191 CS no
4192 MAP yes
4193 DATE Sat Jan 7 01:12:42 2012
4194 NSEQ 9
4195 EFFN 3.186035
4196 CKSUM 3916008225
4197 STATS LOCAL MSV -8.0561 0.71933
4198 STATS LOCAL VITERBI -7.8429 0.71933
4199 STATS LOCAL FORWARD -3.9050 0.71933
4200 HMM A C G T
4201 m->m m->i m->d i->m i->i d->m d->d
4202 COMPO 1.15899 1.72776 1.18469 1.59616
4203 1.38629 1.38629 1.38629 1.38629
4204 0.03784 3.98639 3.98639 1.46634 0.26236 0.00000 *
4205 1 2.91604 3.54214 0.12228 3.44213 1 - -
4206 1.38629 1.38629 1.38629 1.38629
4207 0.03784 3.98639 3.98639 1.46634 0.26236 1.09861 0.40547
4208 2 0.14795 3.33550 2.77275 3.23296 2 - -
4209 1.38629 1.38629 1.38629 1.38629
4210 0.03784 3.98639 3.98639 1.46634 0.26236 1.09861 0.40547
4211 3 3.04365 2.56650 3.09351 0.18610 3 - -
4212 1.38629 1.38629 1.38629 1.38629
4213 0.03784 3.98639 3.98639 1.46634 0.26236 1.09861 0.40547
4214 4 3.04365 2.56650 3.09351 0.18610 4 - -
4215 1.38629 1.38629 1.38629 1.38629
4216 0.03784 3.98639 3.98639 1.46634 0.26236 1.09861 0.40547
4217 5 2.91604 3.54214 0.12228 3.44213 5 - -
4218 1.38629 1.38629 1.38629 1.38629
4219 0.03784 3.98639 3.98639 1.46634 0.26236 1.09861 0.40547
4220 6 0.14795 3.33550 2.77275 3.23296 6 - -
4221 1.38629 1.38629 1.38629 1.38629
4222 0.03784 3.98639 3.98639 1.46634 0.26236 1.09861 0.40547
4223 7 3.38146 0.13654 3.43308 2.79124 7 - -
4224 1.38629 1.38629 1.38629 1.38629
4225 0.03784 3.98639 3.98639 1.46634 0.26236 1.09861 0.40547
4226 8 3.38146 0.13654 3.43308 2.79124 8 - -
4227 1.38629 1.38629 1.38629 1.38629
4228 0.03784 3.98639 3.98639 1.46634 0.26236 1.09861 0.40547
4229 9 3.04365 2.56650 3.09351 0.18610 9 - -
4230 1.38629 1.38629 1.38629 1.38629
4231 0.03784 3.98639 3.98639 1.46634 0.26236 1.09861 0.40547
4232 10 2.91604 3.54214 0.12228 3.44213 10 - -
4233 1.38629 1.38629 1.38629 1.38629
4234 0.03784 3.98639 3.98639 1.46634 0.26236 1.09861 0.40547
4235 11 0.14795 3.33550 2.77275 3.23296 11 - -
4236 1.38629 1.38629 1.38629 1.38629
4237 0.03784 3.98639 3.98639 1.46634 0.26236 1.09861 0.40547
4238 12 0.14795 3.33550 2.77275 3.23296 12 - -
4239 1.38629 1.38629 1.38629 1.38629
4240 0.03784 3.98639 3.98639 1.46634 0.26236 1.09861 0.40547
4241 13 2.91604 3.54214 0.12228 3.44213 13 - -
4242 1.38629 1.38629 1.38629 1.38629
4243 0.03784 3.98639 3.98639 1.46634 0.26236 1.09861 0.40547
4244 14 3.04365 2.56650 3.09351 0.18610 14 - -
4245 1.38629 1.38629 1.38629 1.38629
4246 0.03784 3.98639 3.98639 1.46634 0.26236 1.09861 0.40547
4247 15 2.91604 3.54214 0.12228 3.44213 15 - -
4248 1.38629 1.38629 1.38629 1.38629
4249 0.03784 3.98639 3.98639 1.46634 0.26236 1.09861 0.40547
4250 16 0.14795 3.33550 2.77275 3.23296 16 - -
4251 1.38629 1.38629 1.38629 1.38629
4252 0.03784 3.98639 3.98639 1.46634 0.26236 1.09861 0.40547
4253 17 2.91604 3.54214 0.12228 3.44213 17 - -
4254 1.38629 1.38629 1.38629 1.38629
4255 0.03784 3.98639 3.98639 1.46634 0.26236 1.09861 0.40547
4256 18 2.91604 3.54214 0.12228 3.44213 18 - -
4257 1.38629 1.38629 1.38629 1.38629
4258 0.03784 3.98639 3.98639 1.46634 0.26236 1.09861 0.40547
4259 19 3.04365 2.56650 3.09351 0.18610 19 - -
4260 1.38629 1.38629 1.38629 1.38629
4261 0.03784 3.98639 3.98639 1.46634 0.26236 1.09861 0.40547
4262 20 0.14795 3.33550 2.77275 3.23296 20 - -
4263 1.38629 1.38629 1.38629 1.38629
4264 0.03784 3.98639 3.98639 1.46634 0.26236 1.09861 0.40547
4265 21 0.14795 3.33550 2.77275 3.23296 21 - -
4266 1.38629 1.38629 1.38629 1.38629
4267 0.03784 3.98639 3.98639 1.46634 0.26236 1.09861 0.40547
4268 22 2.91604 3.54214 0.12228 3.44213 22 - -
4269 1.38629 1.38629 1.38629 1.38629
4270 0.03784 3.98639 3.98639 1.46634 0.26236 1.09861 0.40547
4271 23 0.14795 3.33550 2.77275 3.23296 23 - -
4272 1.38629 1.38629 1.38629 1.38629
4273 0.03784 3.98639 3.98639 1.46634 0.26236 1.09861 0.40547
4274 24 2.91604 3.54214 0.12228 3.44213 24 - -
4275 1.38629 1.38629 1.38629 1.38629
4276 0.03784 3.98639 3.98639 1.46634 0.26236 1.09861 0.40547
4277 25 2.91604 3.54214 0.12228 3.44213 25 - -
4278 1.38629 1.38629 1.38629 1.38629
4279 0.03784 3.98639 3.98639 1.46634 0.26236 1.09861 0.40547
4280 26 0.14795 3.33550 2.77275 3.23296 26 - -
4281 1.38629 1.38629 1.38629 1.38629
4282 0.03784 3.98639 3.98639 1.46634 0.26236 1.09861 0.40547
4283 27 3.38146 0.13654 3.43308 2.79124 27 - -
4284 1.38629 1.38629 1.38629 1.38629
4285 0.03784 3.98639 3.98639 1.46634 0.26236 1.09861 0.40547
4286 28 3.38146 0.13654 3.43308 2.79124 28 - -
4287 1.38629 1.38629 1.38629 1.38629
4288 0.03784 3.98639 3.98639 1.46634 0.26236 1.09861 0.40547
4289 29 2.91604 3.54214 0.12228 3.44213 29 - -
4290 1.38629 1.38629 1.38629 1.38629
4291 0.03784 3.98639 3.98639 1.46634 0.26236 1.09861 0.40547
4292 30 2.91604 3.54214 0.12228 3.44213 30 - -
4293 1.38629 1.38629 1.38629 1.38629
4294 0.03784 3.98639 3.98639 1.46634 0.26236 1.09861 0.40547
4295 31 3.38146 0.13654 3.43308 2.79124 31 - -
4296 1.38629 1.38629 1.38629 1.38629
4297 0.03784 3.98639 3.98639 1.46634 0.26236 1.09861 0.40547
4298 32 3.38146 0.13654 3.43308 2.79124 32 - -
4299 1.38629 1.38629 1.38629 1.38629
4300 0.03784 3.98639 3.98639 1.46634 0.26236 1.09861 0.40547
4301 33 2.91604 3.54214 0.12228 3.44213 33 - -
4302 1.38629 1.38629 1.38629 1.38629
4303 0.03784 3.98639 3.98639 1.46634 0.26236 1.09861 0.40547
4304 34 0.14795 3.33550 2.77275 3.23296 34 - -
4305 1.38629 1.38629 1.38629 1.38629
4306 0.03784 3.98639 3.98639 1.46634 0.26236 1.09861 0.40547
4307 35 0.14795 3.33550 2.77275 3.23296 35 - -
4308 1.38629 1.38629 1.38629 1.38629
4309 0.03784 3.98639 3.98639 1.46634 0.26236 1.09861 0.40547
4310 36 3.04365 2.56650 3.09351 0.18610 36 - -
4311 1.38629 1.38629 1.38629 1.38629
4312 0.03784 3.98639 3.98639 1.46634 0.26236 1.09861 0.40547
4313 37 3.04365 2.56650 3.09351 0.18610 37 - -
4314 1.38629 1.38629 1.38629 1.38629
4315 0.03784 3.98639 3.98639 1.46634 0.26236 1.09861 0.40547
4316 38 3.04365 2.56650 3.09351 0.18610 38 - -
4317 1.38629 1.38629 1.38629 1.38629
4318 0.03784 3.98639 3.98639 1.46634 0.26236 1.09861 0.40547
4319 39 0.14795 3.33550 2.77275 3.23296 39 - -
4320 1.38629 1.38629 1.38629 1.38629
4321 0.03784 3.98639 3.98639 1.46634 0.26236 1.09861 0.40547
4322 40 0.14795 3.33550 2.77275 3.23296 40 - -
4323 1.38629 1.38629 1.38629 1.38629
4324 0.03784 3.98639 3.98639 1.46634 0.26236 1.09861 0.40547
4325 41 2.91604 3.54214 0.12228 3.44213 41 - -
4326 1.38629 1.38629 1.38629 1.38629
4327 0.03784 3.98639 3.98639 1.46634 0.26236 1.09861 0.40547
4328 42 3.38146 0.13654 3.43308 2.79124 42 - -
4329 1.38629 1.38629 1.38629 1.38629
4330 0.03784 3.98639 3.98639 1.46634 0.26236 1.09861 0.40547
4331 43 0.14795 3.33550 2.77275 3.23296 43 - -
4332 1.38629 1.38629 1.38629 1.38629
4333 0.03784 3.98639 3.98639 1.46634 0.26236 1.09861 0.40547
4334 44 3.04365 2.56650 3.09351 0.18610 44 - -
4335 1.38629 1.38629 1.38629 1.38629
4336 0.03784 3.98639 3.98639 1.46634 0.26236 1.09861 0.40547
4337 45 0.14795 3.33550 2.77275 3.23296 45 - -
4338 1.38629 1.38629 1.38629 1.38629
4339 0.01910 3.96765 * 1.46634 0.26236 0.00000 *
4340 //
4341 HMMER3/b [3.0 | March 2010]
4342 NAME 4_LSU_Rhizaria_4_LSU_start_fiveb_long
4343 LENG 45
4344 ALPH DNA
4345 RF no
4346 CS no
4347 MAP yes
4348 DATE Sat Jan 7 01:11:06 2012
4349 NSEQ 8
4350 EFFN 3.277344
4351 CKSUM 3075067396
4352 STATS LOCAL MSV -8.2566 0.71933
4353 STATS LOCAL VITERBI -7.5856 0.71933
4354 STATS LOCAL FORWARD -4.0430 0.71933
4355 HMM A C G T
4356 m->m m->i m->d i->m i->i d->m d->d
4357 COMPO 1.05761 1.62227 1.51735 1.44404
4358 1.38629 1.38629 1.38629 1.38629
4359 0.03720 4.00321 4.00321 1.46634 0.26236 0.00000 *
4360 1 3.41625 0.13224 3.46642 2.81671 1 - -
4361 1.38629 1.38629 1.38629 1.38629
4362 0.03720 4.00321 4.00321 1.46634 0.26236 1.09861 0.40547
4363 2 0.14384 3.36564 2.79241 3.26592 2 - -
4364 1.38629 1.38629 1.38629 1.38629
4365 0.03720 4.00321 4.00321 1.46634 0.26236 1.09861 0.40547
4366 3 0.14384 3.36564 2.79241 3.26592 3 - -
4367 1.38629 1.38629 1.38629 1.38629
4368 0.03720 4.00321 4.00321 1.46634 0.26236 1.09861 0.40547
4369 4 0.14384 3.36564 2.79241 3.26592 4 - -
4370 1.38629 1.38629 1.38629 1.38629
4371 0.03720 4.00321 4.00321 1.46634 0.26236 1.09861 0.40547
4372 5 2.93730 3.57289 0.11880 3.47603 5 - -
4373 1.38629 1.38629 1.38629 1.38629
4374 0.03720 4.00321 4.00321 1.46634 0.26236 1.09861 0.40547
4375 6 0.14384 3.36564 2.79241 3.26592 6 - -
4376 1.38629 1.38629 1.38629 1.38629
4377 0.03720 4.00321 4.00321 1.46634 0.26236 1.09861 0.40547
4378 7 3.07387 2.58576 3.12259 0.18107 7 - -
4379 1.38629 1.38629 1.38629 1.38629
4380 0.03720 4.00321 4.00321 1.46634 0.26236 1.09861 0.40547
4381 8 3.41625 0.13224 3.46642 2.81671 8 - -
4382 1.38629 1.38629 1.38629 1.38629
4383 0.03720 4.00321 4.00321 1.46634 0.26236 1.09861 0.40547
4384 9 3.07387 2.58576 3.12259 0.18107 9 - -
4385 1.38629 1.38629 1.38629 1.38629
4386 0.03720 4.00321 4.00321 1.46634 0.26236 1.09861 0.40547
4387 10 3.41625 0.13224 3.46642 2.81671 10 - -
4388 1.38629 1.38629 1.38629 1.38629
4389 0.03720 4.00321 4.00321 1.46634 0.26236 1.09861 0.40547
4390 11 0.14384 3.36564 2.79241 3.26592 11 - -
4391 1.38629 1.38629 1.38629 1.38629
4392 0.03720 4.00321 4.00321 1.46634 0.26236 1.09861 0.40547
4393 12 0.14384 3.36564 2.79241 3.26592 12 - -
4394 1.38629 1.38629 1.38629 1.38629
4395 0.03720 4.00321 4.00321 1.46634 0.26236 1.09861 0.40547
4396 13 0.14384 3.36564 2.79241 3.26592 13 - -
4397 1.38629 1.38629 1.38629 1.38629
4398 0.03720 4.00321 4.00321 1.46634 0.26236 1.09861 0.40547
4399 14 3.07387 2.58576 3.12259 0.18107 14 - -
4400 1.38629 1.38629 1.38629 1.38629
4401 0.03720 4.00321 4.00321 1.46634 0.26236 1.09861 0.40547
4402 15 2.93730 3.57289 0.11880 3.47603 15 - -
4403 1.38629 1.38629 1.38629 1.38629
4404 0.03720 4.00321 4.00321 1.46634 0.26236 1.09861 0.40547
4405 16 0.14384 3.36564 2.79241 3.26592 16 - -
4406 1.38629 1.38629 1.38629 1.38629
4407 0.03720 4.00321 4.00321 1.46634 0.26236 1.09861 0.40547
4408 17 2.93730 3.57289 0.11880 3.47603 17 - -
4409 1.38629 1.38629 1.38629 1.38629
4410 0.03720 4.00321 4.00321 1.46634 0.26236 1.09861 0.40547
4411 18 2.93730 3.57289 0.11880 3.47603 18 - -
4412 1.38629 1.38629 1.38629 1.38629
4413 0.03720 4.00321 4.00321 1.46634 0.26236 1.09861 0.40547
4414 19 3.07387 2.58576 3.12259 0.18107 19 - -
4415 1.38629 1.38629 1.38629 1.38629
4416 0.03720 4.00321 4.00321 1.46634 0.26236 1.09861 0.40547
4417 20 0.14384 3.36564 2.79241 3.26592 20 - -
4418 1.38629 1.38629 1.38629 1.38629
4419 0.03720 4.00321 4.00321 1.46634 0.26236 1.09861 0.40547
4420 21 2.93730 3.57289 0.11880 3.47603 21 - -
4421 1.38629 1.38629 1.38629 1.38629
4422 0.03720 4.00321 4.00321 1.46634 0.26236 1.09861 0.40547
4423 22 2.93730 3.57289 0.11880 3.47603 22 - -
4424 1.38629 1.38629 1.38629 1.38629
4425 0.03720 4.00321 4.00321 1.46634 0.26236 1.09861 0.40547
4426 23 0.14384 3.36564 2.79241 3.26592 23 - -
4427 1.38629 1.38629 1.38629 1.38629
4428 0.03720 4.00321 4.00321 1.46634 0.26236 1.09861 0.40547
4429 24 3.07387 2.58576 3.12259 0.18107 24 - -
4430 1.38629 1.38629 1.38629 1.38629
4431 0.03720 4.00321 4.00321 1.46634 0.26236 1.09861 0.40547
4432 25 3.07387 2.58576 3.12259 0.18107 25 - -
4433 1.38629 1.38629 1.38629 1.38629
4434 0.03720 4.00321 4.00321 1.46634 0.26236 1.09861 0.40547
4435 26 0.14384 3.36564 2.79241 3.26592 26 - -
4436 1.38629 1.38629 1.38629 1.38629
4437 0.03720 4.00321 4.00321 1.46634 0.26236 1.09861 0.40547
4438 27 3.41625 0.13224 3.46642 2.81671 27 - -
4439 1.38629 1.38629 1.38629 1.38629
4440 0.03720 4.00321 4.00321 1.46634 0.26236 1.09861 0.40547
4441 28 3.41625 0.13224 3.46642 2.81671 28 - -
4442 1.38629 1.38629 1.38629 1.38629
4443 0.03720 4.00321 4.00321 1.46634 0.26236 1.09861 0.40547
4444 29 3.41625 0.13224 3.46642 2.81671 29 - -
4445 1.38629 1.38629 1.38629 1.38629
4446 0.03720 4.00321 4.00321 1.46634 0.26236 1.09861 0.40547
4447 30 2.93730 3.57289 0.11880 3.47603 30 - -
4448 1.38629 1.38629 1.38629 1.38629
4449 0.03720 4.00321 4.00321 1.46634 0.26236 1.09861 0.40547
4450 31 3.41625 0.13224 3.46642 2.81671 31 - -
4451 1.38629 1.38629 1.38629 1.38629
4452 0.03720 4.00321 4.00321 1.46634 0.26236 1.09861 0.40547
4453 32 3.07387 2.58576 3.12259 0.18107 32 - -
4454 1.38629 1.38629 1.38629 1.38629
4455 0.03720 4.00321 4.00321 1.46634 0.26236 1.09861 0.40547
4456 33 2.93730 3.57289 0.11880 3.47603 33 - -
4457 1.38629 1.38629 1.38629 1.38629
4458 0.03720 4.00321 4.00321 1.46634 0.26236 1.09861 0.40547
4459 34 0.14384 3.36564 2.79241 3.26592 34 - -
4460 1.38629 1.38629 1.38629 1.38629
4461 0.03720 4.00321 4.00321 1.46634 0.26236 1.09861 0.40547
4462 35 0.14384 3.36564 2.79241 3.26592 35 - -
4463 1.38629 1.38629 1.38629 1.38629
4464 0.03720 4.00321 4.00321 1.46634 0.26236 1.09861 0.40547
4465 36 3.07387 2.58576 3.12259 0.18107 36 - -
4466 1.38629 1.38629 1.38629 1.38629
4467 0.03720 4.00321 4.00321 1.46634 0.26236 1.09861 0.40547
4468 37 3.07387 2.58576 3.12259 0.18107 37 - -
4469 1.38629 1.38629 1.38629 1.38629
4470 0.03720 4.00321 4.00321 1.46634 0.26236 1.09861 0.40547
4471 38 3.07387 2.58576 3.12259 0.18107 38 - -
4472 1.38629 1.38629 1.38629 1.38629
4473 0.03720 4.00321 4.00321 1.46634 0.26236 1.09861 0.40547
4474 39 0.14384 3.36564 2.79241 3.26592 39 - -
4475 1.38629 1.38629 1.38629 1.38629
4476 0.03720 4.00321 4.00321 1.46634 0.26236 1.09861 0.40547
4477 40 0.14384 3.36564 2.79241 3.26592 40 - -
4478 1.38629 1.38629 1.38629 1.38629
4479 0.03720 4.00321 4.00321 1.46634 0.26236 1.09861 0.40547
4480 41 2.93730 3.57289 0.11880 3.47603 41 - -
4481 1.38629 1.38629 1.38629 1.38629
4482 0.03720 4.00321 4.00321 1.46634 0.26236 1.09861 0.40547
4483 42 3.41625 0.13224 3.46642 2.81671 42 - -
4484 1.38629 1.38629 1.38629 1.38629
4485 0.03720 4.00321 4.00321 1.46634 0.26236 1.09861 0.40547
4486 43 0.14384 3.36564 2.79241 3.26592 43 - -
4487 1.38629 1.38629 1.38629 1.38629
4488 0.03720 4.00321 4.00321 1.46634 0.26236 1.09861 0.40547
4489 44 3.07387 2.58576 3.12259 0.18107 44 - -
4490 1.38629 1.38629 1.38629 1.38629
4491 0.03720 4.00321 4.00321 1.46634 0.26236 1.09861 0.40547
4492 45 0.14384 3.36564 2.79241 3.26592 45 - -
4493 1.38629 1.38629 1.38629 1.38629
4494 0.01877 3.98478 * 1.46634 0.26236 0.00000 *
4495 //
4496 HMMER3/b [3.0 | March 2010]
4497 NAME 4_LSU_Rhizaria_4_LSU_start_seven_long
4498 LENG 45
4499 ALPH DNA
4500 RF no
4501 CS no
4502 MAP yes
4503 DATE Sat Jan 7 01:12:14 2012
4504 NSEQ 8
4505 EFFN 3.433594
4506 CKSUM 2840026670
4507 STATS LOCAL MSV -7.5443 0.71933
4508 STATS LOCAL VITERBI -7.7493 0.71933
4509 STATS LOCAL FORWARD -3.7240 0.71933
4510 HMM A C G T
4511 m->m m->i m->d i->m i->i d->m d->d
4512 COMPO 1.06709 1.60222 1.43710 1.52819
4513 1.38629 1.38629 1.38629 1.38629
4514 0.03615 4.03133 4.03133 1.46634 0.26236 0.00000 *
4515 1 0.13738 3.41512 2.82452 3.32011 1 - -
4516 1.38629 1.38629 1.38629 1.38629
4517 0.03615 4.03133 4.03133 1.46634 0.26236 1.09861 0.40547
4518 2 0.49961 1.66480 2.29793 2.26785 2 - -
4519 1.38629 1.38629 1.38629 1.38629
4520 0.03615 4.03133 4.03133 1.46634 0.26236 1.09861 0.40547
4521 3 0.13738 3.41512 2.82452 3.32011 3 - -
4522 1.38629 1.38629 1.38629 1.38629
4523 0.03615 4.03133 4.03133 1.46634 0.26236 1.09861 0.40547
4524 4 0.13738 3.41512 2.82452 3.32011 4 - -
4525 1.38629 1.38629 1.38629 1.38629
4526 0.03615 4.03133 4.03133 1.46634 0.26236 1.09861 0.40547
4527 5 2.97169 3.62301 0.11337 3.53137 5 - -
4528 1.38629 1.38629 1.38629 1.38629
4529 0.03615 4.03133 4.03133 1.46634 0.26236 1.09861 0.40547
4530 6 3.12394 2.61759 3.17074 0.17309 6 - -
4531 1.38629 1.38629 1.38629 1.38629
4532 0.03615 4.03133 4.03133 1.46634 0.26236 1.09861 0.40547
4533 7 3.47324 0.12552 3.52097 2.85812 7 - -
4534 1.38629 1.38629 1.38629 1.38629
4535 0.03615 4.03133 4.03133 1.46634 0.26236 1.09861 0.40547
4536 8 3.12394 2.61759 3.17074 0.17309 8 - -
4537 1.38629 1.38629 1.38629 1.38629
4538 0.03615 4.03133 4.03133 1.46634 0.26236 1.09861 0.40547
4539 9 3.47324 0.12552 3.52097 2.85812 9 - -
4540 1.38629 1.38629 1.38629 1.38629
4541 0.03615 4.03133 4.03133 1.46634 0.26236 1.09861 0.40547
4542 10 0.13738 3.41512 2.82452 3.32011 10 - -
4543 1.38629 1.38629 1.38629 1.38629
4544 0.03615 4.03133 4.03133 1.46634 0.26236 1.09861 0.40547
4545 11 0.13738 3.41512 2.82452 3.32011 11 - -
4546 1.38629 1.38629 1.38629 1.38629
4547 0.03615 4.03133 4.03133 1.46634 0.26236 1.09861 0.40547
4548 12 2.97169 3.62301 0.11337 3.53137 12 - -
4549 1.38629 1.38629 1.38629 1.38629
4550 0.03615 4.03133 4.03133 1.46634 0.26236 1.09861 0.40547
4551 13 3.12394 2.61759 3.17074 0.17309 13 - -
4552 1.38629 1.38629 1.38629 1.38629
4553 0.03615 4.03133 4.03133 1.46634 0.26236 1.09861 0.40547
4554 14 2.97169 3.62301 0.11337 3.53137 14 - -
4555 1.38629 1.38629 1.38629 1.38629
4556 0.03615 4.03133 4.03133 1.46634 0.26236 1.09861 0.40547
4557 15 0.13738 3.41512 2.82452 3.32011 15 - -
4558 1.38629 1.38629 1.38629 1.38629
4559 0.03615 4.03133 4.03133 1.46634 0.26236 1.09861 0.40547
4560 16 0.13738 3.41512 2.82452 3.32011 16 - -
4561 1.38629 1.38629 1.38629 1.38629
4562 0.03615 4.03133 4.03133 1.46634 0.26236 1.09861 0.40547
4563 17 2.97169 3.62301 0.11337 3.53137 17 - -
4564 1.38629 1.38629 1.38629 1.38629
4565 0.03615 4.03133 4.03133 1.46634 0.26236 1.09861 0.40547
4566 18 2.62679 1.57386 2.69172 0.42666 18 - -
4567 1.38629 1.38629 1.38629 1.38629
4568 0.03615 4.03133 4.03133 1.46634 0.26236 1.09861 0.40547
4569 19 0.13738 3.41512 2.82452 3.32011 19 - -
4570 1.38629 1.38629 1.38629 1.38629
4571 0.03615 4.03133 4.03133 1.46634 0.26236 1.09861 0.40547
4572 20 0.13738 3.41512 2.82452 3.32011 20 - -
4573 1.38629 1.38629 1.38629 1.38629
4574 0.03615 4.03133 4.03133 1.46634 0.26236 1.09861 0.40547
4575 21 2.97169 3.62301 0.11337 3.53137 21 - -
4576 1.38629 1.38629 1.38629 1.38629
4577 0.03615 4.03133 4.03133 1.46634 0.26236 1.09861 0.40547
4578 22 2.97169 3.62301 0.11337 3.53137 22 - -
4579 1.38629 1.38629 1.38629 1.38629
4580 0.03615 4.03133 4.03133 1.46634 0.26236 1.09861 0.40547
4581 23 3.47324 0.12552 3.52097 2.85812 23 - -
4582 1.38629 1.38629 1.38629 1.38629
4583 0.03615 4.03133 4.03133 1.46634 0.26236 1.09861 0.40547
4584 24 2.97169 3.62301 0.11337 3.53137 24 - -
4585 1.38629 1.38629 1.38629 1.38629
4586 0.03615 4.03133 4.03133 1.46634 0.26236 1.09861 0.40547
4587 25 0.13738 3.41512 2.82452 3.32011 25 - -
4588 1.38629 1.38629 1.38629 1.38629
4589 0.03615 4.03133 4.03133 1.46634 0.26236 1.09861 0.40547
4590 26 3.47324 0.12552 3.52097 2.85812 26 - -
4591 1.38629 1.38629 1.38629 1.38629
4592 0.03615 4.03133 4.03133 1.46634 0.26236 1.09861 0.40547
4593 27 3.47324 0.12552 3.52097 2.85812 27 - -
4594 1.38629 1.38629 1.38629 1.38629
4595 0.03615 4.03133 4.03133 1.46634 0.26236 1.09861 0.40547
4596 28 3.47324 0.12552 3.52097 2.85812 28 - -
4597 1.38629 1.38629 1.38629 1.38629
4598 0.03615 4.03133 4.03133 1.46634 0.26236 1.09861 0.40547
4599 29 2.97169 3.62301 0.11337 3.53137 29 - -
4600 1.38629 1.38629 1.38629 1.38629
4601 0.03615 4.03133 4.03133 1.46634 0.26236 1.09861 0.40547
4602 30 3.47324 0.12552 3.52097 2.85812 30 - -
4603 1.38629 1.38629 1.38629 1.38629
4604 0.03615 4.03133 4.03133 1.46634 0.26236 1.09861 0.40547
4605 31 3.12394 2.61759 3.17074 0.17309 31 - -
4606 1.38629 1.38629 1.38629 1.38629
4607 0.03615 4.03133 4.03133 1.46634 0.26236 1.09861 0.40547
4608 32 2.97169 3.62301 0.11337 3.53137 32 - -
4609 1.38629 1.38629 1.38629 1.38629
4610 0.03615 4.03133 4.03133 1.46634 0.26236 1.09861 0.40547
4611 33 0.13738 3.41512 2.82452 3.32011 33 - -
4612 1.38629 1.38629 1.38629 1.38629
4613 0.03615 4.03133 4.03133 1.46634 0.26236 1.09861 0.40547
4614 34 0.13738 3.41512 2.82452 3.32011 34 - -
4615 1.38629 1.38629 1.38629 1.38629
4616 0.03615 4.03133 4.03133 1.46634 0.26236 1.09861 0.40547
4617 35 3.12394 2.61759 3.17074 0.17309 35 - -
4618 1.38629 1.38629 1.38629 1.38629
4619 0.03615 4.03133 4.03133 1.46634 0.26236 1.09861 0.40547
4620 36 3.12394 2.61759 3.17074 0.17309 36 - -
4621 1.38629 1.38629 1.38629 1.38629
4622 0.03615 4.03133 4.03133 1.46634 0.26236 1.09861 0.40547
4623 37 3.12394 2.61759 3.17074 0.17309 37 - -
4624 1.38629 1.38629 1.38629 1.38629
4625 0.03615 4.03133 4.03133 1.46634 0.26236 1.09861 0.40547
4626 38 0.13738 3.41512 2.82452 3.32011 38 - -
4627 1.38629 1.38629 1.38629 1.38629
4628 0.03615 4.03133 4.03133 1.46634 0.26236 1.09861 0.40547
4629 39 0.13738 3.41512 2.82452 3.32011 39 - -
4630 1.38629 1.38629 1.38629 1.38629
4631 0.03615 4.03133 4.03133 1.46634 0.26236 1.09861 0.40547
4632 40 2.97169 3.62301 0.11337 3.53137 40 - -
4633 1.38629 1.38629 1.38629 1.38629
4634 0.03615 4.03133 4.03133 1.46634 0.26236 1.09861 0.40547
4635 41 3.47324 0.12552 3.52097 2.85812 41 - -
4636 1.38629 1.38629 1.38629 1.38629
4637 0.03615 4.03133 4.03133 1.46634 0.26236 1.09861 0.40547
4638 42 0.13738 3.41512 2.82452 3.32011 42 - -
4639 1.38629 1.38629 1.38629 1.38629
4640 0.03615 4.03133 4.03133 1.46634 0.26236 1.09861 0.40547
4641 43 3.12394 2.61759 3.17074 0.17309 43 - -
4642 1.38629 1.38629 1.38629 1.38629
4643 0.03615 4.03133 4.03133 1.46634 0.26236 1.09861 0.40547
4644 44 0.13738 3.41512 2.82452 3.32011 44 - -
4645 1.38629 1.38629 1.38629 1.38629
4646 0.03615 4.03133 4.03133 1.46634 0.26236 1.09861 0.40547
4647 45 3.12394 2.61759 3.17074 0.17309 45 - -
4648 1.38629 1.38629 1.38629 1.38629
4649 0.01824 4.01342 * 1.46634 0.26236 0.00000 *
4650 //
4651 HMMER3/b [3.0 | March 2010]
4652 NAME 4_LSU_Rhizaria_4_LSU_start_sixb_long
4653 LENG 45
4654 ALPH DNA
4655 RF no
4656 CS no
4657 MAP yes
4658 DATE Sat Jan 7 01:11:19 2012
4659 NSEQ 2
4660 EFFN 2.000000
4661 CKSUM 2457692988
4662 STATS LOCAL MSV -7.5215 0.72807
4663 STATS LOCAL VITERBI -8.1900 0.72807
4664 STATS LOCAL FORWARD -3.3812 0.72807
4665 HMM A C G T
4666 m->m m->i m->d i->m i->i d->m d->d
4667 COMPO 0.97738 1.41032 1.70842 1.61703
4668 1.38629 1.38629 1.38629 1.38629
4669 0.04879 3.73767 3.73767 1.46634 0.26236 0.00000 *
4670 1 0.23862 2.84929 2.43386 2.70756 1 - -
4671 1.38629 1.38629 1.38629 1.38629
4672 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
4673 2 0.23862 2.84929 2.43386 2.70756 2 - -
4674 1.38629 1.38629 1.38629 1.38629
4675 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
4676 3 0.23862 2.84929 2.43386 2.70756 3 - -
4677 1.38629 1.38629 1.38629 1.38629
4678 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
4679 4 0.23862 2.84929 2.43386 2.70756 4 - -
4680 1.38629 1.38629 1.38629 1.38629
4681 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
4682 5 2.53331 3.02441 0.20344 2.88069 5 - -
4683 1.38629 1.38629 1.38629 1.38629
4684 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
4685 6 0.23862 2.84929 2.43386 2.70756 6 - -
4686 1.38629 1.38629 1.38629 1.38629
4687 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
4688 7 2.81865 0.23582 2.88868 2.35662 7 - -
4689 1.38629 1.38629 1.38629 1.38629
4690 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
4691 8 2.81865 0.23582 2.88868 2.35662 8 - -
4692 1.38629 1.38629 1.38629 1.38629
4693 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
4694 9 2.57915 2.25909 2.64442 0.28946 9 - -
4695 1.38629 1.38629 1.38629 1.38629
4696 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
4697 10 2.81865 0.23582 2.88868 2.35662 10 - -
4698 1.38629 1.38629 1.38629 1.38629
4699 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
4700 11 0.23862 2.84929 2.43386 2.70756 11 - -
4701 1.38629 1.38629 1.38629 1.38629
4702 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
4703 12 0.23862 2.84929 2.43386 2.70756 12 - -
4704 1.38629 1.38629 1.38629 1.38629
4705 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
4706 13 0.23862 2.84929 2.43386 2.70756 13 - -
4707 1.38629 1.38629 1.38629 1.38629
4708 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
4709 14 2.57915 2.25909 2.64442 0.28946 14 - -
4710 1.38629 1.38629 1.38629 1.38629
4711 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
4712 15 2.81865 0.23582 2.88868 2.35662 15 - -
4713 1.38629 1.38629 1.38629 1.38629
4714 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
4715 16 0.23862 2.84929 2.43386 2.70756 16 - -
4716 1.38629 1.38629 1.38629 1.38629
4717 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
4718 17 0.23862 2.84929 2.43386 2.70756 17 - -
4719 1.38629 1.38629 1.38629 1.38629
4720 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
4721 18 2.53331 3.02441 0.20344 2.88069 18 - -
4722 1.38629 1.38629 1.38629 1.38629
4723 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
4724 19 2.57915 2.25909 2.64442 0.28946 19 - -
4725 1.38629 1.38629 1.38629 1.38629
4726 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
4727 20 0.23862 2.84929 2.43386 2.70756 20 - -
4728 1.38629 1.38629 1.38629 1.38629
4729 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
4730 21 0.23862 2.84929 2.43386 2.70756 21 - -
4731 1.38629 1.38629 1.38629 1.38629
4732 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
4733 22 2.53331 3.02441 0.20344 2.88069 22 - -
4734 1.38629 1.38629 1.38629 1.38629
4735 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
4736 23 0.23862 2.84929 2.43386 2.70756 23 - -
4737 1.38629 1.38629 1.38629 1.38629
4738 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
4739 24 2.57915 2.25909 2.64442 0.28946 24 - -
4740 1.38629 1.38629 1.38629 1.38629
4741 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
4742 25 2.81865 0.23582 2.88868 2.35662 25 - -
4743 1.38629 1.38629 1.38629 1.38629
4744 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
4745 26 0.23862 2.84929 2.43386 2.70756 26 - -
4746 1.38629 1.38629 1.38629 1.38629
4747 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
4748 27 2.81865 0.23582 2.88868 2.35662 27 - -
4749 1.38629 1.38629 1.38629 1.38629
4750 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
4751 28 2.81865 0.23582 2.88868 2.35662 28 - -
4752 1.38629 1.38629 1.38629 1.38629
4753 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
4754 29 2.81865 0.23582 2.88868 2.35662 29 - -
4755 1.38629 1.38629 1.38629 1.38629
4756 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
4757 30 2.53331 3.02441 0.20344 2.88069 30 - -
4758 1.38629 1.38629 1.38629 1.38629
4759 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
4760 31 2.81865 0.23582 2.88868 2.35662 31 - -
4761 1.38629 1.38629 1.38629 1.38629
4762 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
4763 32 2.57915 2.25909 2.64442 0.28946 32 - -
4764 1.38629 1.38629 1.38629 1.38629
4765 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
4766 33 2.53331 3.02441 0.20344 2.88069 33 - -
4767 1.38629 1.38629 1.38629 1.38629
4768 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
4769 34 0.23862 2.84929 2.43386 2.70756 34 - -
4770 1.38629 1.38629 1.38629 1.38629
4771 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
4772 35 0.23862 2.84929 2.43386 2.70756 35 - -
4773 1.38629 1.38629 1.38629 1.38629
4774 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
4775 36 2.81865 0.23582 2.88868 2.35662 36 - -
4776 1.38629 1.38629 1.38629 1.38629
4777 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
4778 37 2.57915 2.25909 2.64442 0.28946 37 - -
4779 1.38629 1.38629 1.38629 1.38629
4780 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
4781 38 2.57915 2.25909 2.64442 0.28946 38 - -
4782 1.38629 1.38629 1.38629 1.38629
4783 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
4784 39 0.23862 2.84929 2.43386 2.70756 39 - -
4785 1.38629 1.38629 1.38629 1.38629
4786 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
4787 40 0.23862 2.84929 2.43386 2.70756 40 - -
4788 1.38629 1.38629 1.38629 1.38629
4789 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
4790 41 2.53331 3.02441 0.20344 2.88069 41 - -
4791 1.38629 1.38629 1.38629 1.38629
4792 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
4793 42 2.81865 0.23582 2.88868 2.35662 42 - -
4794 1.38629 1.38629 1.38629 1.38629
4795 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
4796 43 0.23862 2.84929 2.43386 2.70756 43 - -
4797 1.38629 1.38629 1.38629 1.38629
4798 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
4799 44 2.57915 2.25909 2.64442 0.28946 44 - -
4800 1.38629 1.38629 1.38629 1.38629
4801 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
4802 45 0.23862 2.84929 2.43386 2.70756 45 - -
4803 1.38629 1.38629 1.38629 1.38629
4804 0.02469 3.71357 * 1.46634 0.26236 0.00000 *
4805 //
4806 HMMER3/b [3.0 | March 2010]
4807 NAME 4_LSU_Rhizaria_4_LSU_start_ten_long
4808 LENG 45
4809 ALPH DNA
4810 RF no
4811 CS no
4812 MAP yes
4813 DATE Fri Jan 20 15:56:55 2012
4814 NSEQ 23
4815 EFFN 3.220337
4816 CKSUM 656820074
4817 STATS LOCAL MSV -8.1133 0.71932
4818 STATS LOCAL VITERBI -7.8470 0.71932
4819 STATS LOCAL FORWARD -4.0798 0.71932
4820 HMM A C G T
4821 m->m m->i m->d i->m i->i d->m d->d
4822 COMPO 1.10983 1.47054 1.44208 1.58890
4823 1.38629 1.38629 1.38629 1.38629
4824 0.03760 3.99274 3.99274 1.46634 0.26236 0.00000 *
4825 1 0.14638 3.34693 2.78022 3.24546 1 - -
4826 1.38629 1.38629 1.38629 1.38629
4827 0.03760 3.99274 3.99274 1.46634 0.26236 1.09861 0.40547
4828 2 2.92413 3.55382 0.12094 3.45500 2 - -
4829 1.38629 1.38629 1.38629 1.38629
4830 0.03760 3.99274 3.99274 1.46634 0.26236 1.09861 0.40547
4831 3 2.92413 3.55382 0.12094 3.45500 3 - -
4832 1.38629 1.38629 1.38629 1.38629
4833 0.03760 3.99274 3.99274 1.46634 0.26236 1.09861 0.40547
4834 4 3.39466 0.13489 3.44573 2.80092 4 - -
4835 1.38629 1.38629 1.38629 1.38629
4836 0.03760 3.99274 3.99274 1.46634 0.26236 1.09861 0.40547
4837 5 0.14638 3.34693 2.78022 3.24546 5 - -
4838 1.38629 1.38629 1.38629 1.38629
4839 0.03760 3.99274 3.99274 1.46634 0.26236 1.09861 0.40547
4840 6 3.39466 0.13489 3.44573 2.80092 6 - -
4841 1.38629 1.38629 1.38629 1.38629
4842 0.03760 3.99274 3.99274 1.46634 0.26236 1.09861 0.40547
4843 7 0.14638 3.34693 2.78022 3.24546 7 - -
4844 1.38629 1.38629 1.38629 1.38629
4845 0.03760 3.99274 3.99274 1.46634 0.26236 1.09861 0.40547
4846 8 3.05509 2.57380 3.10452 0.18418 8 - -
4847 1.38629 1.38629 1.38629 1.38629
4848 0.03760 3.99274 3.99274 1.46634 0.26236 1.09861 0.40547
4849 9 3.39466 0.13489 3.44573 2.80092 9 - -
4850 1.38629 1.38629 1.38629 1.38629
4851 0.03760 3.99274 3.99274 1.46634 0.26236 1.09861 0.40547
4852 10 0.14638 3.34693 2.78022 3.24546 10 - -
4853 1.38629 1.38629 1.38629 1.38629
4854 0.03760 3.99274 3.99274 1.46634 0.26236 1.09861 0.40547
4855 11 2.92413 3.55382 0.12094 3.45500 11 - -
4856 1.38629 1.38629 1.38629 1.38629
4857 0.03760 3.99274 3.99274 1.46634 0.26236 1.09861 0.40547
4858 12 3.39466 0.13489 3.44573 2.80092 12 - -
4859 1.38629 1.38629 1.38629 1.38629
4860 0.03760 3.99274 3.99274 1.46634 0.26236 1.09861 0.40547
4861 13 3.05509 2.57380 3.10452 0.18418 13 - -
4862 1.38629 1.38629 1.38629 1.38629
4863 0.03760 3.99274 3.99274 1.46634 0.26236 1.09861 0.40547
4864 14 3.39466 0.13489 3.44573 2.80092 14 - -
4865 1.38629 1.38629 1.38629 1.38629
4866 0.03760 3.99274 3.99274 1.46634 0.26236 1.09861 0.40547
4867 15 2.92413 3.55382 0.12094 3.45500 15 - -
4868 1.38629 1.38629 1.38629 1.38629
4869 0.03760 3.99274 3.99274 1.46634 0.26236 1.09861 0.40547
4870 16 0.14638 3.34693 2.78022 3.24546 16 - -
4871 1.38629 1.38629 1.38629 1.38629
4872 0.03760 3.99274 3.99274 1.46634 0.26236 1.09861 0.40547
4873 17 2.92413 3.55382 0.12094 3.45500 17 - -
4874 1.38629 1.38629 1.38629 1.38629
4875 0.03760 3.99274 3.99274 1.46634 0.26236 1.09861 0.40547
4876 18 3.05509 2.57380 3.10452 0.18418 18 - -
4877 1.38629 1.38629 1.38629 1.38629
4878 0.03760 3.99274 3.99274 1.46634 0.26236 1.09861 0.40547
4879 19 2.92413 3.55382 0.12094 3.45500 19 - -
4880 1.38629 1.38629 1.38629 1.38629
4881 0.03760 3.99274 3.99274 1.46634 0.26236 1.09861 0.40547
4882 20 0.14638 3.34693 2.78022 3.24546 20 - -
4883 1.38629 1.38629 1.38629 1.38629
4884 0.03760 3.99274 3.99274 1.46634 0.26236 1.09861 0.40547
4885 21 2.92413 3.55382 0.12094 3.45500 21 - -
4886 1.38629 1.38629 1.38629 1.38629
4887 0.03760 3.99274 3.99274 1.46634 0.26236 1.09861 0.40547
4888 22 2.92413 3.55382 0.12094 3.45500 22 - -
4889 1.38629 1.38629 1.38629 1.38629
4890 0.03760 3.99274 3.99274 1.46634 0.26236 1.09861 0.40547
4891 23 0.14638 3.34693 2.78022 3.24546 23 - -
4892 1.38629 1.38629 1.38629 1.38629
4893 0.03760 3.99274 3.99274 1.46634 0.26236 1.09861 0.40547
4894 24 3.05509 2.57380 3.10452 0.18418 24 - -
4895 1.38629 1.38629 1.38629 1.38629
4896 0.03760 3.99274 3.99274 1.46634 0.26236 1.09861 0.40547
4897 25 0.14638 3.34693 2.78022 3.24546 25 - -
4898 1.38629 1.38629 1.38629 1.38629
4899 0.03760 3.99274 3.99274 1.46634 0.26236 1.09861 0.40547
4900 26 3.39466 0.13489 3.44573 2.80092 26 - -
4901 1.38629 1.38629 1.38629 1.38629
4902 0.03760 3.99274 3.99274 1.46634 0.26236 1.09861 0.40547
4903 27 2.92413 3.55382 0.12094 3.45500 27 - -
4904 1.38629 1.38629 1.38629 1.38629
4905 0.03760 3.99274 3.99274 1.46634 0.26236 1.09861 0.40547
4906 28 3.39466 0.13489 3.44573 2.80092 28 - -
4907 1.38629 1.38629 1.38629 1.38629
4908 0.03760 3.99274 3.99274 1.46634 0.26236 1.09861 0.40547
4909 29 2.92413 3.55382 0.12094 3.45500 29 - -
4910 1.38629 1.38629 1.38629 1.38629
4911 0.03760 3.99274 3.99274 1.46634 0.26236 1.09861 0.40547
4912 30 3.39466 0.13489 3.44573 2.80092 30 - -
4913 1.38629 1.38629 1.38629 1.38629
4914 0.03760 3.99274 3.99274 1.46634 0.26236 1.09861 0.40547
4915 31 3.05509 2.57380 3.10452 0.18418 31 - -
4916 1.38629 1.38629 1.38629 1.38629
4917 0.03760 3.99274 3.99274 1.46634 0.26236 1.09861 0.40547
4918 32 0.14638 3.34693 2.78022 3.24546 32 - -
4919 1.38629 1.38629 1.38629 1.38629
4920 0.03760 3.99274 3.99274 1.46634 0.26236 1.09861 0.40547
4921 33 0.14638 3.34693 2.78022 3.24546 33 - -
4922 1.38629 1.38629 1.38629 1.38629
4923 0.03760 3.99274 3.99274 1.46634 0.26236 1.09861 0.40547
4924 34 0.14638 3.34693 2.78022 3.24546 34 - -
4925 1.38629 1.38629 1.38629 1.38629
4926 0.03760 3.99274 3.99274 1.46634 0.26236 1.09861 0.40547
4927 35 3.39466 0.13489 3.44573 2.80092 35 - -
4928 1.38629 1.38629 1.38629 1.38629
4929 0.03760 3.99274 3.99274 1.46634 0.26236 1.09861 0.40547
4930 36 3.05509 2.57380 3.10452 0.18418 36 - -
4931 1.38629 1.38629 1.38629 1.38629
4932 0.03760 3.99274 3.99274 1.46634 0.26236 1.09861 0.40547
4933 37 3.05509 2.57380 3.10452 0.18418 37 - -
4934 1.38629 1.38629 1.38629 1.38629
4935 0.03760 3.99274 3.99274 1.46634 0.26236 1.09861 0.40547
4936 38 0.14638 3.34693 2.78022 3.24546 38 - -
4937 1.38629 1.38629 1.38629 1.38629
4938 0.03760 3.99274 3.99274 1.46634 0.26236 1.09861 0.40547
4939 39 0.14638 3.34693 2.78022 3.24546 39 - -
4940 1.38629 1.38629 1.38629 1.38629
4941 0.03760 3.99274 3.99274 1.46634 0.26236 1.09861 0.40547
4942 40 0.14638 3.34693 2.78022 3.24546 40 - -
4943 1.38629 1.38629 1.38629 1.38629
4944 0.03760 3.99274 3.99274 1.46634 0.26236 1.09861 0.40547
4945 41 3.39466 0.13489 3.44573 2.80092 41 - -
4946 1.38629 1.38629 1.38629 1.38629
4947 0.03760 3.99274 3.99274 1.46634 0.26236 1.09861 0.40547
4948 42 0.14638 3.34693 2.78022 3.24546 42 - -
4949 1.38629 1.38629 1.38629 1.38629
4950 0.03760 3.99274 3.99274 1.46634 0.26236 1.09861 0.40547
4951 43 3.05509 2.57380 3.10452 0.18418 43 - -
4952 1.38629 1.38629 1.38629 1.38629
4953 0.03760 3.99274 3.99274 1.46634 0.26236 1.09861 0.40547
4954 44 0.14638 3.34693 2.78022 3.24546 44 - -
4955 1.38629 1.38629 1.38629 1.38629
4956 0.03760 3.99274 3.99274 1.46634 0.26236 1.09861 0.40547
4957 45 3.05509 2.57380 3.10452 0.18418 45 - -
4958 1.38629 1.38629 1.38629 1.38629
4959 0.01897 3.97412 * 1.46634 0.26236 0.00000 *
4960 //
4961 HMMER3/b [3.0 | March 2010]
4962 NAME 4_LSU_Rhizaria_4_LSU_start_threeb_long
4963 LENG 45
4964 ALPH DNA
4965 RF no
4966 CS no
4967 MAP yes
4968 DATE Sat Jan 7 01:10:48 2012
4969 NSEQ 2
4970 EFFN 2.000000
4971 CKSUM 599151012
4972 STATS LOCAL MSV -7.4804 0.72817
4973 STATS LOCAL VITERBI -8.1165 0.72817
4974 STATS LOCAL FORWARD -3.4979 0.72817
4975 HMM A C G T
4976 m->m m->i m->d i->m i->i d->m d->d
4977 COMPO 1.09588 1.59613 1.48788 1.43875
4978 1.38629 1.38629 1.38629 1.38629
4979 0.04879 3.73767 3.73767 1.46634 0.26236 0.00000 *
4980 1 0.23862 2.84929 2.43386 2.70756 1 - -
4981 1.38629 1.38629 1.38629 1.38629
4982 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
4983 2 2.81865 0.23582 2.88868 2.35662 2 - -
4984 1.38629 1.38629 1.38629 1.38629
4985 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
4986 3 0.23862 2.84929 2.43386 2.70756 3 - -
4987 1.38629 1.38629 1.38629 1.38629
4988 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
4989 4 0.23862 2.84929 2.43386 2.70756 4 - -
4990 1.38629 1.38629 1.38629 1.38629
4991 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
4992 5 2.53331 3.02441 0.20344 2.88069 5 - -
4993 1.38629 1.38629 1.38629 1.38629
4994 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
4995 6 0.23862 2.84929 2.43386 2.70756 6 - -
4996 1.38629 1.38629 1.38629 1.38629
4997 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
4998 7 2.57915 2.25909 2.64442 0.28946 7 - -
4999 1.38629 1.38629 1.38629 1.38629
5000 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
5001 8 2.81865 0.23582 2.88868 2.35662 8 - -
5002 1.38629 1.38629 1.38629 1.38629
5003 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
5004 9 2.57915 2.25909 2.64442 0.28946 9 - -
5005 1.38629 1.38629 1.38629 1.38629
5006 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
5007 10 2.81865 0.23582 2.88868 2.35662 10 - -
5008 1.38629 1.38629 1.38629 1.38629
5009 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
5010 11 0.23862 2.84929 2.43386 2.70756 11 - -
5011 1.38629 1.38629 1.38629 1.38629
5012 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
5013 12 2.53331 3.02441 0.20344 2.88069 12 - -
5014 1.38629 1.38629 1.38629 1.38629
5015 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
5016 13 0.23862 2.84929 2.43386 2.70756 13 - -
5017 1.38629 1.38629 1.38629 1.38629
5018 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
5019 14 2.57915 2.25909 2.64442 0.28946 14 - -
5020 1.38629 1.38629 1.38629 1.38629
5021 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
5022 15 2.53331 3.02441 0.20344 2.88069 15 - -
5023 1.38629 1.38629 1.38629 1.38629
5024 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
5025 16 0.23862 2.84929 2.43386 2.70756 16 - -
5026 1.38629 1.38629 1.38629 1.38629
5027 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
5028 17 2.53331 3.02441 0.20344 2.88069 17 - -
5029 1.38629 1.38629 1.38629 1.38629
5030 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
5031 18 2.53331 3.02441 0.20344 2.88069 18 - -
5032 1.38629 1.38629 1.38629 1.38629
5033 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
5034 19 2.57915 2.25909 2.64442 0.28946 19 - -
5035 1.38629 1.38629 1.38629 1.38629
5036 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
5037 20 0.23862 2.84929 2.43386 2.70756 20 - -
5038 1.38629 1.38629 1.38629 1.38629
5039 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
5040 21 0.23862 2.84929 2.43386 2.70756 21 - -
5041 1.38629 1.38629 1.38629 1.38629
5042 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
5043 22 2.53331 3.02441 0.20344 2.88069 22 - -
5044 1.38629 1.38629 1.38629 1.38629
5045 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
5046 23 0.23862 2.84929 2.43386 2.70756 23 - -
5047 1.38629 1.38629 1.38629 1.38629
5048 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
5049 24 2.57915 2.25909 2.64442 0.28946 24 - -
5050 1.38629 1.38629 1.38629 1.38629
5051 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
5052 25 2.57915 2.25909 2.64442 0.28946 25 - -
5053 1.38629 1.38629 1.38629 1.38629
5054 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
5055 26 0.23862 2.84929 2.43386 2.70756 26 - -
5056 1.38629 1.38629 1.38629 1.38629
5057 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
5058 27 2.81865 0.23582 2.88868 2.35662 27 - -
5059 1.38629 1.38629 1.38629 1.38629
5060 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
5061 28 2.81865 0.23582 2.88868 2.35662 28 - -
5062 1.38629 1.38629 1.38629 1.38629
5063 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
5064 29 2.81865 0.23582 2.88868 2.35662 29 - -
5065 1.38629 1.38629 1.38629 1.38629
5066 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
5067 30 2.53331 3.02441 0.20344 2.88069 30 - -
5068 1.38629 1.38629 1.38629 1.38629
5069 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
5070 31 2.81865 0.23582 2.88868 2.35662 31 - -
5071 1.38629 1.38629 1.38629 1.38629
5072 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
5073 32 2.57915 2.25909 2.64442 0.28946 32 - -
5074 1.38629 1.38629 1.38629 1.38629
5075 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
5076 33 2.53331 3.02441 0.20344 2.88069 33 - -
5077 1.38629 1.38629 1.38629 1.38629
5078 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
5079 34 0.23862 2.84929 2.43386 2.70756 34 - -
5080 1.38629 1.38629 1.38629 1.38629
5081 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
5082 35 0.23862 2.84929 2.43386 2.70756 35 - -
5083 1.38629 1.38629 1.38629 1.38629
5084 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
5085 36 2.57915 2.25909 2.64442 0.28946 36 - -
5086 1.38629 1.38629 1.38629 1.38629
5087 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
5088 37 2.57915 2.25909 2.64442 0.28946 37 - -
5089 1.38629 1.38629 1.38629 1.38629
5090 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
5091 38 2.57915 2.25909 2.64442 0.28946 38 - -
5092 1.38629 1.38629 1.38629 1.38629
5093 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
5094 39 0.23862 2.84929 2.43386 2.70756 39 - -
5095 1.38629 1.38629 1.38629 1.38629
5096 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
5097 40 0.23862 2.84929 2.43386 2.70756 40 - -
5098 1.38629 1.38629 1.38629 1.38629
5099 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
5100 41 2.53331 3.02441 0.20344 2.88069 41 - -
5101 1.38629 1.38629 1.38629 1.38629
5102 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
5103 42 2.81865 0.23582 2.88868 2.35662 42 - -
5104 1.38629 1.38629 1.38629 1.38629
5105 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
5106 43 0.23862 2.84929 2.43386 2.70756 43 - -
5107 1.38629 1.38629 1.38629 1.38629
5108 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
5109 44 2.57915 2.25909 2.64442 0.28946 44 - -
5110 1.38629 1.38629 1.38629 1.38629
5111 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
5112 45 0.23862 2.84929 2.43386 2.70756 45 - -
5113 1.38629 1.38629 1.38629 1.38629
5114 0.02469 3.71357 * 1.46634 0.26236 0.00000 *
5115 //
5116 HMMER3/b [3.0 | March 2010]
5117 NAME 1_SSU_Rhizaria_1_SSU_end_eight_long
5118 LENG 45
5119 ALPH DNA
5120 RF no
5121 CS no
5122 MAP yes
5123 DATE Sat Jan 7 02:47:07 2012
5124 NSEQ 9
5125 EFFN 3.344238
5126 CKSUM 2541343808
5127 STATS LOCAL MSV -8.0722 0.71932
5128 STATS LOCAL VITERBI -7.8311 0.71932
5129 STATS LOCAL FORWARD -4.0456 0.71932
5130 HMM A C G T
5131 m->m m->i m->d i->m i->i d->m d->d
5132 COMPO 1.09860 1.66560 1.29697 1.58852
5133 1.38629 1.38629 1.38629 1.38629
5134 0.03674 4.01534 4.01534 1.46634 0.26236 0.00000 *
5135 1 0.14099 3.38714 2.80639 3.28946 1 - -
5136 1.38629 1.38629 1.38629 1.38629
5137 0.03674 4.01534 4.01534 1.46634 0.26236 1.09861 0.40547
5138 2 2.95232 3.59473 0.11640 3.50012 2 - -
5139 1.38629 1.38629 1.38629 1.38629
5140 0.03674 4.01534 4.01534 1.46634 0.26236 1.09861 0.40547
5141 3 3.09556 2.59956 3.14345 0.17756 3 - -
5142 1.38629 1.38629 1.38629 1.38629
5143 0.03674 4.01534 4.01534 1.46634 0.26236 1.09861 0.40547
5144 4 3.44103 0.12927 3.49015 2.83476 4 - -
5145 1.38629 1.38629 1.38629 1.38629
5146 0.03674 4.01534 4.01534 1.46634 0.26236 1.09861 0.40547
5147 5 2.95232 3.59473 0.11640 3.50012 5 - -
5148 1.38629 1.38629 1.38629 1.38629
5149 0.03674 4.01534 4.01534 1.46634 0.26236 1.09861 0.40547
5150 6 3.09556 2.59956 3.14345 0.17756 6 - -
5151 1.38629 1.38629 1.38629 1.38629
5152 0.03674 4.01534 4.01534 1.46634 0.26236 1.09861 0.40547
5153 7 0.14099 3.38714 2.80639 3.28946 7 - -
5154 1.38629 1.38629 1.38629 1.38629
5155 0.03674 4.01534 4.01534 1.46634 0.26236 1.09861 0.40547
5156 8 0.14099 3.38714 2.80639 3.28946 8 - -
5157 1.38629 1.38629 1.38629 1.38629
5158 0.03674 4.01534 4.01534 1.46634 0.26236 1.09861 0.40547
5159 9 3.44103 0.12927 3.49015 2.83476 9 - -
5160 1.38629 1.38629 1.38629 1.38629
5161 0.03674 4.01534 4.01534 1.46634 0.26236 1.09861 0.40547
5162 10 0.14099 3.38714 2.80639 3.28946 10 - -
5163 1.38629 1.38629 1.38629 1.38629
5164 0.03674 4.01534 4.01534 1.46634 0.26236 1.09861 0.40547
5165 11 0.14099 3.38714 2.80639 3.28946 11 - -
5166 1.38629 1.38629 1.38629 1.38629
5167 0.03674 4.01534 4.01534 1.46634 0.26236 1.09861 0.40547
5168 12 2.95232 3.59473 0.11640 3.50012 12 - -
5169 1.38629 1.38629 1.38629 1.38629
5170 0.03674 4.01534 4.01534 1.46634 0.26236 1.09861 0.40547
5171 13 2.95232 3.59473 0.11640 3.50012 13 - -
5172 1.38629 1.38629 1.38629 1.38629
5173 0.03674 4.01534 4.01534 1.46634 0.26236 1.09861 0.40547
5174 14 3.44103 0.12927 3.49015 2.83476 14 - -
5175 1.38629 1.38629 1.38629 1.38629
5176 0.03674 4.01534 4.01534 1.46634 0.26236 1.09861 0.40547
5177 15 0.14099 3.38714 2.80639 3.28946 15 - -
5178 1.38629 1.38629 1.38629 1.38629
5179 0.03674 4.01534 4.01534 1.46634 0.26236 1.09861 0.40547
5180 16 3.09556 2.59956 3.14345 0.17756 16 - -
5181 1.38629 1.38629 1.38629 1.38629
5182 0.03674 4.01534 4.01534 1.46634 0.26236 1.09861 0.40547
5183 17 3.44103 0.12927 3.49015 2.83476 17 - -
5184 1.38629 1.38629 1.38629 1.38629
5185 0.03674 4.01534 4.01534 1.46634 0.26236 1.09861 0.40547
5186 18 0.14099 3.38714 2.80639 3.28946 18 - -
5187 1.38629 1.38629 1.38629 1.38629
5188 0.03674 4.01534 4.01534 1.46634 0.26236 1.09861 0.40547
5189 19 2.95232 3.59473 0.11640 3.50012 19 - -
5190 1.38629 1.38629 1.38629 1.38629
5191 0.03674 4.01534 4.01534 1.46634 0.26236 1.09861 0.40547
5192 20 3.09556 2.59956 3.14345 0.17756 20 - -
5193 1.38629 1.38629 1.38629 1.38629
5194 0.03674 4.01534 4.01534 1.46634 0.26236 1.09861 0.40547
5195 21 0.14099 3.38714 2.80639 3.28946 21 - -
5196 1.38629 1.38629 1.38629 1.38629
5197 0.03674 4.01534 4.01534 1.46634 0.26236 1.09861 0.40547
5198 22 2.95232 3.59473 0.11640 3.50012 22 - -
5199 1.38629 1.38629 1.38629 1.38629
5200 0.03674 4.01534 4.01534 1.46634 0.26236 1.09861 0.40547
5201 23 2.95232 3.59473 0.11640 3.50012 23 - -
5202 1.38629 1.38629 1.38629 1.38629
5203 0.03674 4.01534 4.01534 1.46634 0.26236 1.09861 0.40547
5204 24 3.09556 2.59956 3.14345 0.17756 24 - -
5205 1.38629 1.38629 1.38629 1.38629
5206 0.03674 4.01534 4.01534 1.46634 0.26236 1.09861 0.40547
5207 25 2.95232 3.59473 0.11640 3.50012 25 - -
5208 1.38629 1.38629 1.38629 1.38629
5209 0.03674 4.01534 4.01534 1.46634 0.26236 1.09861 0.40547
5210 26 0.14099 3.38714 2.80639 3.28946 26 - -
5211 1.38629 1.38629 1.38629 1.38629
5212 0.03674 4.01534 4.01534 1.46634 0.26236 1.09861 0.40547
5213 27 0.14099 3.38714 2.80639 3.28946 27 - -
5214 1.38629 1.38629 1.38629 1.38629
5215 0.03674 4.01534 4.01534 1.46634 0.26236 1.09861 0.40547
5216 28 2.71758 0.29638 2.29202 2.41461 28 - -
5217 1.38629 1.38629 1.38629 1.38629
5218 0.03674 4.01534 4.01534 1.46634 0.26236 1.09861 0.40547
5219 29 3.44103 0.12927 3.49015 2.83476 29 - -
5220 1.38629 1.38629 1.38629 1.38629
5221 0.03674 4.01534 4.01534 1.46634 0.26236 1.09861 0.40547
5222 30 3.09556 2.59956 3.14345 0.17756 30 - -
5223 1.38629 1.38629 1.38629 1.38629
5224 0.03674 4.01534 4.01534 1.46634 0.26236 1.09861 0.40547
5225 31 2.95232 3.59473 0.11640 3.50012 31 - -
5226 1.38629 1.38629 1.38629 1.38629
5227 0.03674 4.01534 4.01534 1.46634 0.26236 1.09861 0.40547
5228 32 3.44103 0.12927 3.49015 2.83476 32 - -
5229 1.38629 1.38629 1.38629 1.38629
5230 0.03674 4.01534 4.01534 1.46634 0.26236 1.09861 0.40547
5231 33 0.14099 3.38714 2.80639 3.28946 33 - -
5232 1.38629 1.38629 1.38629 1.38629
5233 0.03674 4.01534 4.01534 1.46634 0.26236 1.09861 0.40547
5234 34 2.95232 3.59473 0.11640 3.50012 34 - -
5235 1.38629 1.38629 1.38629 1.38629
5236 0.03674 4.01534 4.01534 1.46634 0.26236 1.09861 0.40547
5237 35 0.14099 3.38714 2.80639 3.28946 35 - -
5238 1.38629 1.38629 1.38629 1.38629
5239 0.03674 4.01534 4.01534 1.46634 0.26236 1.09861 0.40547
5240 36 0.14099 3.38714 2.80639 3.28946 36 - -
5241 1.38629 1.38629 1.38629 1.38629
5242 0.03674 4.01534 4.01534 1.46634 0.26236 1.09861 0.40547
5243 37 2.95232 3.59473 0.11640 3.50012 37 - -
5244 1.38629 1.38629 1.38629 1.38629
5245 0.03674 4.01534 4.01534 1.46634 0.26236 1.09861 0.40547
5246 38 2.95232 3.59473 0.11640 3.50012 38 - -
5247 1.38629 1.38629 1.38629 1.38629
5248 0.03674 4.01534 4.01534 1.46634 0.26236 1.09861 0.40547
5249 39 0.14099 3.38714 2.80639 3.28946 39 - -
5250 1.38629 1.38629 1.38629 1.38629
5251 0.03674 4.01534 4.01534 1.46634 0.26236 1.09861 0.40547
5252 40 3.09556 2.59956 3.14345 0.17756 40 - -
5253 1.38629 1.38629 1.38629 1.38629
5254 0.03674 4.01534 4.01534 1.46634 0.26236 1.09861 0.40547
5255 41 2.22549 0.30216 2.77330 2.40447 41 - -
5256 1.38629 1.38629 1.38629 1.38629
5257 0.03674 4.01534 4.01534 1.46634 0.26236 1.09861 0.40547
5258 42 0.14099 3.38714 2.80639 3.28946 42 - -
5259 1.38629 1.38629 1.38629 1.38629
5260 0.03674 4.01534 4.01534 1.46634 0.26236 1.09861 0.40547
5261 43 3.09556 2.59956 3.14345 0.17756 43 - -
5262 1.38629 1.38629 1.38629 1.38629
5263 0.03674 4.01534 4.01534 1.46634 0.26236 1.09861 0.40547
5264 44 3.09556 2.59956 3.14345 0.17756 44 - -
5265 1.38629 1.38629 1.38629 1.38629
5266 0.03674 4.01534 4.01534 1.46634 0.26236 1.09861 0.40547
5267 45 0.14099 3.38714 2.80639 3.28946 45 - -
5268 1.38629 1.38629 1.38629 1.38629
5269 0.01854 3.99714 * 1.46634 0.26236 0.00000 *
5270 //
5271 HMMER3/b [3.0 | March 2010]
5272 NAME 1_SSU_Rhizaria_1_SSU_end_five_long
5273 LENG 45
5274 ALPH DNA
5275 RF no
5276 CS no
5277 MAP yes
5278 DATE Sat Jan 7 02:46:45 2012
5279 NSEQ 28
5280 EFFN 3.202637
5281 CKSUM 173814394
5282 STATS LOCAL MSV -7.9514 0.71931
5283 STATS LOCAL VITERBI -7.8681 0.71931
5284 STATS LOCAL FORWARD -3.8589 0.71931
5285 HMM A C G T
5286 m->m m->i m->d i->m i->i d->m d->d
5287 COMPO 1.15846 1.63373 1.24319 1.59767
5288 1.38629 1.38629 1.38629 1.38629
5289 0.03772 3.98947 3.98947 1.46634 0.26236 0.00000 *
5290 1 0.14718 3.34105 2.77638 3.23903 1 - -
5291 1.38629 1.38629 1.38629 1.38629
5292 0.03772 3.98947 3.98947 1.46634 0.26236 1.09861 0.40547
5293 2 2.91997 3.54781 0.12163 3.44838 2 - -
5294 1.38629 1.38629 1.38629 1.38629
5295 0.03772 3.98947 3.98947 1.46634 0.26236 1.09861 0.40547
5296 3 3.04920 2.57004 3.09885 0.18516 3 - -
5297 1.38629 1.38629 1.38629 1.38629
5298 0.03772 3.98947 3.98947 1.46634 0.26236 1.09861 0.40547
5299 4 3.38787 0.13574 3.43922 2.79594 4 - -
5300 1.38629 1.38629 1.38629 1.38629
5301 0.03772 3.98947 3.98947 1.46634 0.26236 1.09861 0.40547
5302 5 2.91997 3.54781 0.12163 3.44838 5 - -
5303 1.38629 1.38629 1.38629 1.38629
5304 0.08261 3.98947 2.80042 1.46634 0.26236 1.09861 0.40547
5305 6 2.97071 2.51979 3.02329 0.19892 6 - -
5306 1.38629 1.38629 1.38629 1.38629
5307 0.03942 3.94628 3.94628 1.46634 0.26236 0.47562 0.97153
5308 7 0.14718 3.34105 2.77638 3.23903 7 - -
5309 1.38629 1.38629 1.38629 1.38629
5310 0.03772 3.98947 3.98947 1.46634 0.26236 1.09861 0.40547
5311 8 0.14718 3.34105 2.77638 3.23903 8 - -
5312 1.38629 1.38629 1.38629 1.38629
5313 0.03772 3.98947 3.98947 1.46634 0.26236 1.09861 0.40547
5314 9 3.38787 0.13574 3.43922 2.79594 9 - -
5315 1.38629 1.38629 1.38629 1.38629
5316 0.03772 3.98947 3.98947 1.46634 0.26236 1.09861 0.40547
5317 10 0.14718 3.34105 2.77638 3.23903 10 - -
5318 1.38629 1.38629 1.38629 1.38629
5319 0.03772 3.98947 3.98947 1.46634 0.26236 1.09861 0.40547
5320 11 0.14718 3.34105 2.77638 3.23903 11 - -
5321 1.38629 1.38629 1.38629 1.38629
5322 0.03772 3.98947 3.98947 1.46634 0.26236 1.09861 0.40547
5323 12 2.91997 3.54781 0.12163 3.44838 12 - -
5324 1.38629 1.38629 1.38629 1.38629
5325 0.03772 3.98947 3.98947 1.46634 0.26236 1.09861 0.40547
5326 13 2.91997 3.54781 0.12163 3.44838 13 - -
5327 1.38629 1.38629 1.38629 1.38629
5328 0.03772 3.98947 3.98947 1.46634 0.26236 1.09861 0.40547
5329 14 3.38787 0.13574 3.43922 2.79594 14 - -
5330 1.38629 1.38629 1.38629 1.38629
5331 0.03772 3.98947 3.98947 1.46634 0.26236 1.09861 0.40547
5332 15 0.14718 3.34105 2.77638 3.23903 15 - -
5333 1.38629 1.38629 1.38629 1.38629
5334 0.03772 3.98947 3.98947 1.46634 0.26236 1.09861 0.40547
5335 16 3.04920 2.57004 3.09885 0.18516 16 - -
5336 1.38629 1.38629 1.38629 1.38629
5337 0.03772 3.98947 3.98947 1.46634 0.26236 1.09861 0.40547
5338 17 3.38787 0.13574 3.43922 2.79594 17 - -
5339 1.38629 1.38629 1.38629 1.38629
5340 0.03772 3.98947 3.98947 1.46634 0.26236 1.09861 0.40547
5341 18 2.91997 3.54781 0.12163 3.44838 18 - -
5342 1.38629 1.38629 1.38629 1.38629
5343 0.03772 3.98947 3.98947 1.46634 0.26236 1.09861 0.40547
5344 19 2.91997 3.54781 0.12163 3.44838 19 - -
5345 1.38629 1.38629 1.38629 1.38629
5346 0.03772 3.98947 3.98947 1.46634 0.26236 1.09861 0.40547
5347 20 3.04920 2.57004 3.09885 0.18516 20 - -
5348 1.38629 1.38629 1.38629 1.38629
5349 0.03772 3.98947 3.98947 1.46634 0.26236 1.09861 0.40547
5350 21 0.14718 3.34105 2.77638 3.23903 21 - -
5351 1.38629 1.38629 1.38629 1.38629
5352 0.03772 3.98947 3.98947 1.46634 0.26236 1.09861 0.40547
5353 22 2.91997 3.54781 0.12163 3.44838 22 - -
5354 1.38629 1.38629 1.38629 1.38629
5355 0.03772 3.98947 3.98947 1.46634 0.26236 1.09861 0.40547
5356 23 2.91997 3.54781 0.12163 3.44838 23 - -
5357 1.38629 1.38629 1.38629 1.38629
5358 0.03772 3.98947 3.98947 1.46634 0.26236 1.09861 0.40547
5359 24 3.04920 2.57004 3.09885 0.18516 24 - -
5360 1.38629 1.38629 1.38629 1.38629
5361 0.03772 3.98947 3.98947 1.46634 0.26236 1.09861 0.40547
5362 25 2.91997 3.54781 0.12163 3.44838 25 - -
5363 1.38629 1.38629 1.38629 1.38629
5364 0.03772 3.98947 3.98947 1.46634 0.26236 1.09861 0.40547
5365 26 0.14718 3.34105 2.77638 3.23903 26 - -
5366 1.38629 1.38629 1.38629 1.38629
5367 0.03772 3.98947 3.98947 1.46634 0.26236 1.09861 0.40547
5368 27 0.14718 3.34105 2.77638 3.23903 27 - -
5369 1.38629 1.38629 1.38629 1.38629
5370 0.03772 3.98947 3.98947 1.46634 0.26236 1.09861 0.40547
5371 28 3.38787 0.13574 3.43922 2.79594 28 - -
5372 1.38629 1.38629 1.38629 1.38629
5373 0.03772 3.98947 3.98947 1.46634 0.26236 1.09861 0.40547
5374 29 3.38787 0.13574 3.43922 2.79594 29 - -
5375 1.38629 1.38629 1.38629 1.38629
5376 0.03772 3.98947 3.98947 1.46634 0.26236 1.09861 0.40547
5377 30 3.04920 2.57004 3.09885 0.18516 30 - -
5378 1.38629 1.38629 1.38629 1.38629
5379 0.03772 3.98947 3.98947 1.46634 0.26236 1.09861 0.40547
5380 31 2.91997 3.54781 0.12163 3.44838 31 - -
5381 1.38629 1.38629 1.38629 1.38629
5382 0.03772 3.98947 3.98947 1.46634 0.26236 1.09861 0.40547
5383 32 3.38787 0.13574 3.43922 2.79594 32 - -
5384 1.38629 1.38629 1.38629 1.38629
5385 0.03772 3.98947 3.98947 1.46634 0.26236 1.09861 0.40547
5386 33 0.14718 3.34105 2.77638 3.23903 33 - -
5387 1.38629 1.38629 1.38629 1.38629
5388 0.03772 3.98947 3.98947 1.46634 0.26236 1.09861 0.40547
5389 34 2.91997 3.54781 0.12163 3.44838 34 - -
5390 1.38629 1.38629 1.38629 1.38629
5391 0.03772 3.98947 3.98947 1.46634 0.26236 1.09861 0.40547
5392 35 0.14718 3.34105 2.77638 3.23903 35 - -
5393 1.38629 1.38629 1.38629 1.38629
5394 0.03772 3.98947 3.98947 1.46634 0.26236 1.09861 0.40547
5395 36 0.14718 3.34105 2.77638 3.23903 36 - -
5396 1.38629 1.38629 1.38629 1.38629
5397 0.03772 3.98947 3.98947 1.46634 0.26236 1.09861 0.40547
5398 37 2.91997 3.54781 0.12163 3.44838 37 - -
5399 1.38629 1.38629 1.38629 1.38629
5400 0.03772 3.98947 3.98947 1.46634 0.26236 1.09861 0.40547
5401 38 2.91997 3.54781 0.12163 3.44838 38 - -
5402 1.38629 1.38629 1.38629 1.38629
5403 0.03772 3.98947 3.98947 1.46634 0.26236 1.09861 0.40547
5404 39 0.14718 3.34105 2.77638 3.23903 39 - -
5405 1.38629 1.38629 1.38629 1.38629
5406 0.03772 3.98947 3.98947 1.46634 0.26236 1.09861 0.40547
5407 40 3.04920 2.57004 3.09885 0.18516 40 - -
5408 1.38629 1.38629 1.38629 1.38629
5409 0.03772 3.98947 3.98947 1.46634 0.26236 1.09861 0.40547
5410 41 3.38787 0.13574 3.43922 2.79594 41 - -
5411 1.38629 1.38629 1.38629 1.38629
5412 0.03772 3.98947 3.98947 1.46634 0.26236 1.09861 0.40547
5413 42 0.14718 3.34105 2.77638 3.23903 42 - -
5414 1.38629 1.38629 1.38629 1.38629
5415 0.03772 3.98947 3.98947 1.46634 0.26236 1.09861 0.40547
5416 43 3.04920 2.57004 3.09885 0.18516 43 - -
5417 1.38629 1.38629 1.38629 1.38629
5418 0.03772 3.98947 3.98947 1.46634 0.26236 1.09861 0.40547
5419 44 3.04920 2.57004 3.09885 0.18516 44 - -
5420 1.38629 1.38629 1.38629 1.38629
5421 0.03772 3.98947 3.98947 1.46634 0.26236 1.09861 0.40547
5422 45 0.14718 3.34105 2.77638 3.23903 45 - -
5423 1.38629 1.38629 1.38629 1.38629
5424 0.01904 3.97079 * 1.46634 0.26236 0.00000 *
5425 //
5426 HMMER3/b [3.0 | March 2010]
5427 NAME 1_SSU_Rhizaria_1_SSU_end_four_long
5428 LENG 45
5429 ALPH DNA
5430 RF no
5431 CS no
5432 MAP yes
5433 DATE Sat Jan 7 02:46:30 2012
5434 NSEQ 6
5435 EFFN 3.325195
5436 CKSUM 4117779485
5437 STATS LOCAL MSV -8.0198 0.71933
5438 STATS LOCAL VITERBI -7.7895 0.71933
5439 STATS LOCAL FORWARD -3.9838 0.71933
5440 HMM A C G T
5441 m->m m->i m->d i->m i->i d->m d->d
5442 COMPO 1.13372 1.63099 1.27909 1.58896
5443 1.38629 1.38629 1.38629 1.38629
5444 0.03687 4.01190 4.01190 1.46634 0.26236 0.00000 *
5445 1 0.14179 3.38107 2.80245 3.28281 1 - -
5446 1.38629 1.38629 1.38629 1.38629
5447 0.03687 4.01190 4.01190 1.46634 0.26236 1.09861 0.40547
5448 2 2.94809 3.58857 0.11707 3.49333 2 - -
5449 1.38629 1.38629 1.38629 1.38629
5450 0.03687 4.01190 4.01190 1.46634 0.26236 1.09861 0.40547
5451 3 3.08942 2.59566 3.13755 0.17855 3 - -
5452 1.38629 1.38629 1.38629 1.38629
5453 0.03687 4.01190 4.01190 1.46634 0.26236 1.09861 0.40547
5454 4 3.43404 0.13010 3.48346 2.82967 4 - -
5455 1.38629 1.38629 1.38629 1.38629
5456 0.03687 4.01190 4.01190 1.46634 0.26236 1.09861 0.40547
5457 5 2.94809 3.58857 0.11707 3.49333 5 - -
5458 1.38629 1.38629 1.38629 1.38629
5459 0.03687 4.01190 4.01190 1.46634 0.26236 1.09861 0.40547
5460 6 3.08942 2.59566 3.13755 0.17855 6 - -
5461 1.38629 1.38629 1.38629 1.38629
5462 0.03687 4.01190 4.01190 1.46634 0.26236 1.09861 0.40547
5463 7 0.14179 3.38107 2.80245 3.28281 7 - -
5464 1.38629 1.38629 1.38629 1.38629
5465 0.03687 4.01190 4.01190 1.46634 0.26236 1.09861 0.40547
5466 8 0.14179 3.38107 2.80245 3.28281 8 - -
5467 1.38629 1.38629 1.38629 1.38629
5468 0.03687 4.01190 4.01190 1.46634 0.26236 1.09861 0.40547
5469 9 3.43404 0.13010 3.48346 2.82967 9 - -
5470 1.38629 1.38629 1.38629 1.38629
5471 0.03687 4.01190 4.01190 1.46634 0.26236 1.09861 0.40547
5472 10 0.14179 3.38107 2.80245 3.28281 10 - -
5473 1.38629 1.38629 1.38629 1.38629
5474 0.03687 4.01190 4.01190 1.46634 0.26236 1.09861 0.40547
5475 11 0.14179 3.38107 2.80245 3.28281 11 - -
5476 1.38629 1.38629 1.38629 1.38629
5477 0.03687 4.01190 4.01190 1.46634 0.26236 1.09861 0.40547
5478 12 2.94809 3.58857 0.11707 3.49333 12 - -
5479 1.38629 1.38629 1.38629 1.38629
5480 0.03687 4.01190 4.01190 1.46634 0.26236 1.09861 0.40547
5481 13 2.94809 3.58857 0.11707 3.49333 13 - -
5482 1.38629 1.38629 1.38629 1.38629
5483 0.03687 4.01190 4.01190 1.46634 0.26236 1.09861 0.40547
5484 14 3.43404 0.13010 3.48346 2.82967 14 - -
5485 1.38629 1.38629 1.38629 1.38629
5486 0.03687 4.01190 4.01190 1.46634 0.26236 1.09861 0.40547
5487 15 0.14179 3.38107 2.80245 3.28281 15 - -
5488 1.38629 1.38629 1.38629 1.38629
5489 0.03687 4.01190 4.01190 1.46634 0.26236 1.09861 0.40547
5490 16 3.08942 2.59566 3.13755 0.17855 16 - -
5491 1.38629 1.38629 1.38629 1.38629
5492 0.03687 4.01190 4.01190 1.46634 0.26236 1.09861 0.40547
5493 17 3.43404 0.13010 3.48346 2.82967 17 - -
5494 1.38629 1.38629 1.38629 1.38629
5495 0.03687 4.01190 4.01190 1.46634 0.26236 1.09861 0.40547
5496 18 0.86143 2.51567 0.90836 2.37033 18 - -
5497 1.38629 1.38629 1.38629 1.38629
5498 0.03687 4.01190 4.01190 1.46634 0.26236 1.09861 0.40547
5499 19 2.94809 3.58857 0.11707 3.49333 19 - -
5500 1.38629 1.38629 1.38629 1.38629
5501 0.03687 4.01190 4.01190 1.46634 0.26236 1.09861 0.40547
5502 20 3.08942 2.59566 3.13755 0.17855 20 - -
5503 1.38629 1.38629 1.38629 1.38629
5504 0.03687 4.01190 4.01190 1.46634 0.26236 1.09861 0.40547
5505 21 0.14179 3.38107 2.80245 3.28281 21 - -
5506 1.38629 1.38629 1.38629 1.38629
5507 0.03687 4.01190 4.01190 1.46634 0.26236 1.09861 0.40547
5508 22 2.94809 3.58857 0.11707 3.49333 22 - -
5509 1.38629 1.38629 1.38629 1.38629
5510 0.03687 4.01190 4.01190 1.46634 0.26236 1.09861 0.40547
5511 23 2.94809 3.58857 0.11707 3.49333 23 - -
5512 1.38629 1.38629 1.38629 1.38629
5513 0.03687 4.01190 4.01190 1.46634 0.26236 1.09861 0.40547
5514 24 3.08942 2.59566 3.13755 0.17855 24 - -
5515 1.38629 1.38629 1.38629 1.38629
5516 0.03687 4.01190 4.01190 1.46634 0.26236 1.09861 0.40547
5517 25 2.94809 3.58857 0.11707 3.49333 25 - -
5518 1.38629 1.38629 1.38629 1.38629
5519 0.03687 4.01190 4.01190 1.46634 0.26236 1.09861 0.40547
5520 26 0.14179 3.38107 2.80245 3.28281 26 - -
5521 1.38629 1.38629 1.38629 1.38629
5522 0.03687 4.01190 4.01190 1.46634 0.26236 1.09861 0.40547
5523 27 0.14179 3.38107 2.80245 3.28281 27 - -
5524 1.38629 1.38629 1.38629 1.38629
5525 0.03687 4.01190 4.01190 1.46634 0.26236 1.09861 0.40547
5526 28 3.43404 0.13010 3.48346 2.82967 28 - -
5527 1.38629 1.38629 1.38629 1.38629
5528 0.03687 4.01190 4.01190 1.46634 0.26236 1.09861 0.40547
5529 29 3.43404 0.13010 3.48346 2.82967 29 - -
5530 1.38629 1.38629 1.38629 1.38629
5531 0.03687 4.01190 4.01190 1.46634 0.26236 1.09861 0.40547
5532 30 3.08942 2.59566 3.13755 0.17855 30 - -
5533 1.38629 1.38629 1.38629 1.38629
5534 0.03687 4.01190 4.01190 1.46634 0.26236 1.09861 0.40547
5535 31 2.94809 3.58857 0.11707 3.49333 31 - -
5536 1.38629 1.38629 1.38629 1.38629
5537 0.03687 4.01190 4.01190 1.46634 0.26236 1.09861 0.40547
5538 32 3.43404 0.13010 3.48346 2.82967 32 - -
5539 1.38629 1.38629 1.38629 1.38629
5540 0.03687 4.01190 4.01190 1.46634 0.26236 1.09861 0.40547
5541 33 0.14179 3.38107 2.80245 3.28281 33 - -
5542 1.38629 1.38629 1.38629 1.38629
5543 0.03687 4.01190 4.01190 1.46634 0.26236 1.09861 0.40547
5544 34 2.94809 3.58857 0.11707 3.49333 34 - -
5545 1.38629 1.38629 1.38629 1.38629
5546 0.03687 4.01190 4.01190 1.46634 0.26236 1.09861 0.40547
5547 35 0.14179 3.38107 2.80245 3.28281 35 - -
5548 1.38629 1.38629 1.38629 1.38629
5549 0.03687 4.01190 4.01190 1.46634 0.26236 1.09861 0.40547
5550 36 0.14179 3.38107 2.80245 3.28281 36 - -
5551 1.38629 1.38629 1.38629 1.38629
5552 0.03687 4.01190 4.01190 1.46634 0.26236 1.09861 0.40547
5553 37 2.94809 3.58857 0.11707 3.49333 37 - -
5554 1.38629 1.38629 1.38629 1.38629
5555 0.03687 4.01190 4.01190 1.46634 0.26236 1.09861 0.40547
5556 38 2.94809 3.58857 0.11707 3.49333 38 - -
5557 1.38629 1.38629 1.38629 1.38629
5558 0.03687 4.01190 4.01190 1.46634 0.26236 1.09861 0.40547
5559 39 0.14179 3.38107 2.80245 3.28281 39 - -
5560 1.38629 1.38629 1.38629 1.38629
5561 0.03687 4.01190 4.01190 1.46634 0.26236 1.09861 0.40547
5562 40 3.08942 2.59566 3.13755 0.17855 40 - -
5563 1.38629 1.38629 1.38629 1.38629
5564 0.03687 4.01190 4.01190 1.46634 0.26236 1.09861 0.40547
5565 41 3.43404 0.13010 3.48346 2.82967 41 - -
5566 1.38629 1.38629 1.38629 1.38629
5567 0.03687 4.01190 4.01190 1.46634 0.26236 1.09861 0.40547
5568 42 0.14179 3.38107 2.80245 3.28281 42 - -
5569 1.38629 1.38629 1.38629 1.38629
5570 0.03687 4.01190 4.01190 1.46634 0.26236 1.09861 0.40547
5571 43 3.08942 2.59566 3.13755 0.17855 43 - -
5572 1.38629 1.38629 1.38629 1.38629
5573 0.03687 4.01190 4.01190 1.46634 0.26236 1.09861 0.40547
5574 44 3.08942 2.59566 3.13755 0.17855 44 - -
5575 1.38629 1.38629 1.38629 1.38629
5576 0.03687 4.01190 4.01190 1.46634 0.26236 1.09861 0.40547
5577 45 0.14179 3.38107 2.80245 3.28281 45 - -
5578 1.38629 1.38629 1.38629 1.38629
5579 0.01860 3.99364 * 1.46634 0.26236 0.00000 *
5580 //
5581 HMMER3/b [3.0 | March 2010]
5582 NAME 1_SSU_Rhizaria_1_SSU_end_nine_long
5583 LENG 45
5584 ALPH DNA
5585 RF no
5586 CS no
5587 MAP yes
5588 DATE Sat Jan 7 02:47:20 2012
5589 NSEQ 16
5590 EFFN 3.269531
5591 CKSUM 4070040162
5592 STATS LOCAL MSV -8.0187 0.71931
5593 STATS LOCAL VITERBI -7.6599 0.71931
5594 STATS LOCAL FORWARD -4.0885 0.71931
5595 HMM A C G T
5596 m->m m->i m->d i->m i->i d->m d->d
5597 COMPO 1.26783 1.62578 1.24505 1.45297
5598 1.38629 1.38629 1.38629 1.38629
5599 0.03725 4.00178 4.00178 1.46634 0.26236 0.00000 *
5600 1 0.14418 3.36310 2.79076 3.26314 1 - -
5601 1.38629 1.38629 1.38629 1.38629
5602 0.03725 4.00178 4.00178 1.46634 0.26236 1.09861 0.40547
5603 2 2.93551 3.57031 0.11909 3.47317 2 - -
5604 1.38629 1.38629 1.38629 1.38629
5605 0.03725 4.00178 4.00178 1.46634 0.26236 1.09861 0.40547
5606 3 3.07131 2.58413 3.12013 0.18149 3 - -
5607 1.38629 1.38629 1.38629 1.38629
5608 0.03725 4.00178 4.00178 1.46634 0.26236 1.09861 0.40547
5609 4 3.41331 0.13259 3.46361 2.81457 4 - -
5610 1.38629 1.38629 1.38629 1.38629
5611 0.03725 4.00178 4.00178 1.46634 0.26236 1.09861 0.40547
5612 5 2.93551 3.57031 0.11909 3.47317 5 - -
5613 1.38629 1.38629 1.38629 1.38629
5614 0.03725 4.00178 4.00178 1.46634 0.26236 1.09861 0.40547
5615 6 3.07131 2.58413 3.12013 0.18149 6 - -
5616 1.38629 1.38629 1.38629 1.38629
5617 0.03725 4.00178 4.00178 1.46634 0.26236 1.09861 0.40547
5618 7 0.14418 3.36310 2.79076 3.26314 7 - -
5619 1.38629 1.38629 1.38629 1.38629
5620 0.03725 4.00178 4.00178 1.46634 0.26236 1.09861 0.40547
5621 8 0.14418 3.36310 2.79076 3.26314 8 - -
5622 1.38629 1.38629 1.38629 1.38629
5623 0.03725 4.00178 4.00178 1.46634 0.26236 1.09861 0.40547
5624 9 3.41331 0.13259 3.46361 2.81457 9 - -
5625 1.38629 1.38629 1.38629 1.38629
5626 0.03725 4.00178 4.00178 1.46634 0.26236 1.09861 0.40547
5627 10 0.14418 3.36310 2.79076 3.26314 10 - -
5628 1.38629 1.38629 1.38629 1.38629
5629 0.03725 4.00178 4.00178 1.46634 0.26236 1.09861 0.40547
5630 11 0.14418 3.36310 2.79076 3.26314 11 - -
5631 1.38629 1.38629 1.38629 1.38629
5632 0.03725 4.00178 4.00178 1.46634 0.26236 1.09861 0.40547
5633 12 2.93551 3.57031 0.11909 3.47317 12 - -
5634 1.38629 1.38629 1.38629 1.38629
5635 0.03725 4.00178 4.00178 1.46634 0.26236 1.09861 0.40547
5636 13 2.93551 3.57031 0.11909 3.47317 13 - -
5637 1.38629 1.38629 1.38629 1.38629
5638 0.03725 4.00178 4.00178 1.46634 0.26236 1.09861 0.40547
5639 14 3.07131 2.58413 3.12013 0.18149 14 - -
5640 1.38629 1.38629 1.38629 1.38629
5641 0.03725 4.00178 4.00178 1.46634 0.26236 1.09861 0.40547
5642 15 3.07131 2.58413 3.12013 0.18149 15 - -
5643 1.38629 1.38629 1.38629 1.38629
5644 0.03725 4.00178 4.00178 1.46634 0.26236 1.09861 0.40547
5645 16 3.07131 2.58413 3.12013 0.18149 16 - -
5646 1.38629 1.38629 1.38629 1.38629
5647 0.03725 4.00178 4.00178 1.46634 0.26236 1.09861 0.40547
5648 17 3.41331 0.13259 3.46361 2.81457 17 - -
5649 1.38629 1.38629 1.38629 1.38629
5650 0.03725 4.00178 4.00178 1.46634 0.26236 1.09861 0.40547
5651 18 3.41331 0.13259 3.46361 2.81457 18 - -
5652 1.38629 1.38629 1.38629 1.38629
5653 0.03725 4.00178 4.00178 1.46634 0.26236 1.09861 0.40547
5654 19 2.93551 3.57031 0.11909 3.47317 19 - -
5655 1.38629 1.38629 1.38629 1.38629
5656 0.03725 4.00178 4.00178 1.46634 0.26236 1.09861 0.40547
5657 20 3.07131 2.58413 3.12013 0.18149 20 - -
5658 1.38629 1.38629 1.38629 1.38629
5659 0.03725 4.00178 4.00178 1.46634 0.26236 1.09861 0.40547
5660 21 0.14418 3.36310 2.79076 3.26314 21 - -
5661 1.38629 1.38629 1.38629 1.38629
5662 0.03725 4.00178 4.00178 1.46634 0.26236 1.09861 0.40547
5663 22 2.93551 3.57031 0.11909 3.47317 22 - -
5664 1.38629 1.38629 1.38629 1.38629
5665 0.03725 4.00178 4.00178 1.46634 0.26236 1.09861 0.40547
5666 23 2.93551 3.57031 0.11909 3.47317 23 - -
5667 1.38629 1.38629 1.38629 1.38629
5668 0.03725 4.00178 4.00178 1.46634 0.26236 1.09861 0.40547
5669 24 3.07131 2.58413 3.12013 0.18149 24 - -
5670 1.38629 1.38629 1.38629 1.38629
5671 0.03725 4.00178 4.00178 1.46634 0.26236 1.09861 0.40547
5672 25 2.93551 3.57031 0.11909 3.47317 25 - -
5673 1.38629 1.38629 1.38629 1.38629
5674 0.03725 4.00178 4.00178 1.46634 0.26236 1.09861 0.40547
5675 26 0.14418 3.36310 2.79076 3.26314 26 - -
5676 1.38629 1.38629 1.38629 1.38629
5677 0.03725 4.00178 4.00178 1.46634 0.26236 1.09861 0.40547
5678 27 0.14418 3.36310 2.79076 3.26314 27 - -
5679 1.38629 1.38629 1.38629 1.38629
5680 0.03725 4.00178 4.00178 1.46634 0.26236 1.09861 0.40547
5681 28 3.41331 0.13259 3.46361 2.81457 28 - -
5682 1.38629 1.38629 1.38629 1.38629
5683 0.03725 4.00178 4.00178 1.46634 0.26236 1.09861 0.40547
5684 29 3.41331 0.13259 3.46361 2.81457 29 - -
5685 1.38629 1.38629 1.38629 1.38629
5686 0.03725 4.00178 4.00178 1.46634 0.26236 1.09861 0.40547
5687 30 2.32277 2.42204 2.75037 0.28854 30 - -
5688 1.38629 1.38629 1.38629 1.38629
5689 0.03725 4.00178 4.00178 1.46634 0.26236 1.09861 0.40547
5690 31 2.93551 3.57031 0.11909 3.47317 31 - -
5691 1.38629 1.38629 1.38629 1.38629
5692 0.03725 4.00178 4.00178 1.46634 0.26236 1.09861 0.40547
5693 32 3.41331 0.13259 3.46361 2.81457 32 - -
5694 1.38629 1.38629 1.38629 1.38629
5695 0.03725 4.00178 4.00178 1.46634 0.26236 1.09861 0.40547
5696 33 2.93551 3.57031 0.11909 3.47317 33 - -
5697 1.38629 1.38629 1.38629 1.38629
5698 0.03725 4.00178 4.00178 1.46634 0.26236 1.09861 0.40547
5699 34 2.93551 3.57031 0.11909 3.47317 34 - -
5700 1.38629 1.38629 1.38629 1.38629
5701 0.03725 4.00178 4.00178 1.46634 0.26236 1.09861 0.40547
5702 35 0.14418 3.36310 2.79076 3.26314 35 - -
5703 1.38629 1.38629 1.38629 1.38629
5704 0.03725 4.00178 4.00178 1.46634 0.26236 1.09861 0.40547
5705 36 0.14418 3.36310 2.79076 3.26314 36 - -
5706 1.38629 1.38629 1.38629 1.38629
5707 0.03725 4.00178 4.00178 1.46634 0.26236 1.09861 0.40547
5708 37 2.93551 3.57031 0.11909 3.47317 37 - -
5709 1.38629 1.38629 1.38629 1.38629
5710 0.03725 4.00178 4.00178 1.46634 0.26236 1.09861 0.40547
5711 38 2.93551 3.57031 0.11909 3.47317 38 - -
5712 1.38629 1.38629 1.38629 1.38629
5713 0.03725 4.00178 4.00178 1.46634 0.26236 1.09861 0.40547
5714 39 0.14418 3.36310 2.79076 3.26314 39 - -
5715 1.38629 1.38629 1.38629 1.38629
5716 0.03725 4.00178 4.00178 1.46634 0.26236 1.09861 0.40547
5717 40 3.07131 2.58413 3.12013 0.18149 40 - -
5718 1.38629 1.38629 1.38629 1.38629
5719 0.03725 4.00178 4.00178 1.46634 0.26236 1.09861 0.40547
5720 41 3.41331 0.13259 3.46361 2.81457 41 - -
5721 1.38629 1.38629 1.38629 1.38629
5722 0.03725 4.00178 4.00178 1.46634 0.26236 1.09861 0.40547
5723 42 0.14418 3.36310 2.79076 3.26314 42 - -
5724 1.38629 1.38629 1.38629 1.38629
5725 0.03725 4.00178 4.00178 1.46634 0.26236 1.09861 0.40547
5726 43 3.07131 2.58413 3.12013 0.18149 43 - -
5727 1.38629 1.38629 1.38629 1.38629
5728 0.03725 4.00178 4.00178 1.46634 0.26236 1.09861 0.40547
5729 44 3.07131 2.58413 3.12013 0.18149 44 - -
5730 1.38629 1.38629 1.38629 1.38629
5731 0.03725 4.00178 4.00178 1.46634 0.26236 1.09861 0.40547
5732 45 0.14418 3.36310 2.79076 3.26314 45 - -
5733 1.38629 1.38629 1.38629 1.38629
5734 0.01880 3.98333 * 1.46634 0.26236 0.00000 *
5735 //
5736 HMMER3/b [3.0 | March 2010]
5737 NAME 1_SSU_Rhizaria_1_SSU_end_one_long
5738 LENG 45
5739 ALPH DNA
5740 RF no
5741 CS no
5742 MAP yes
5743 DATE Sat Jan 7 02:45:40 2012
5744 NSEQ 29
5745 EFFN 3.366577
5746 CKSUM 2032687351
5747 STATS LOCAL MSV -8.0108 0.71931
5748 STATS LOCAL VITERBI -7.6631 0.71931
5749 STATS LOCAL FORWARD -4.1093 0.71931
5750 HMM A C G T
5751 m->m m->i m->d i->m i->i d->m d->d
5752 COMPO 1.27825 1.61970 1.24244 1.44886
5753 1.38629 1.38629 1.38629 1.38629
5754 0.03659 4.01937 4.01937 1.46634 0.26236 0.00000 *
5755 1 0.14007 3.39421 2.81098 3.29720 1 - -
5756 1.38629 1.38629 1.38629 1.38629
5757 0.03659 4.01937 4.01937 1.46634 0.26236 1.09861 0.40547
5758 2 2.95723 3.60189 0.11562 3.50803 2 - -
5759 1.38629 1.38629 1.38629 1.38629
5760 0.03659 4.01937 4.01937 1.46634 0.26236 1.09861 0.40547
5761 3 3.10271 2.60411 3.15033 0.17642 3 - -
5762 1.38629 1.38629 1.38629 1.38629
5763 0.03659 4.01937 4.01937 1.46634 0.26236 1.09861 0.40547
5764 4 3.44918 0.12831 3.49795 2.84068 4 - -
5765 1.38629 1.38629 1.38629 1.38629
5766 0.03659 4.01937 4.01937 1.46634 0.26236 1.09861 0.40547
5767 5 2.95723 3.60189 0.11562 3.50803 5 - -
5768 1.38629 1.38629 1.38629 1.38629
5769 0.03659 4.01937 4.01937 1.46634 0.26236 1.09861 0.40547
5770 6 3.10271 2.60411 3.15033 0.17642 6 - -
5771 1.38629 1.38629 1.38629 1.38629
5772 0.03659 4.01937 4.01937 1.46634 0.26236 1.09861 0.40547
5773 7 0.14007 3.39421 2.81098 3.29720 7 - -
5774 1.38629 1.38629 1.38629 1.38629
5775 0.03659 4.01937 4.01937 1.46634 0.26236 1.09861 0.40547
5776 8 0.19533 2.82319 2.68717 2.99676 8 - -
5777 1.38629 1.38629 1.38629 1.38629
5778 0.03659 4.01937 4.01937 1.46634 0.26236 1.09861 0.40547
5779 9 3.44918 0.12831 3.49795 2.84068 9 - -
5780 1.38629 1.38629 1.38629 1.38629
5781 0.03659 4.01937 4.01937 1.46634 0.26236 1.09861 0.40547
5782 10 0.14007 3.39421 2.81098 3.29720 10 - -
5783 1.38629 1.38629 1.38629 1.38629
5784 0.03659 4.01937 4.01937 1.46634 0.26236 1.09861 0.40547
5785 11 0.14007 3.39421 2.81098 3.29720 11 - -
5786 1.38629 1.38629 1.38629 1.38629
5787 0.03659 4.01937 4.01937 1.46634 0.26236 1.09861 0.40547
5788 12 2.95723 3.60189 0.11562 3.50803 12 - -
5789 1.38629 1.38629 1.38629 1.38629
5790 0.03659 4.01937 4.01937 1.46634 0.26236 1.09861 0.40547
5791 13 2.95723 3.60189 0.11562 3.50803 13 - -
5792 1.38629 1.38629 1.38629 1.38629
5793 0.03659 4.01937 4.01937 1.46634 0.26236 1.09861 0.40547
5794 14 3.10271 2.60411 3.15033 0.17642 14 - -
5795 1.38629 1.38629 1.38629 1.38629
5796 0.03659 4.01937 4.01937 1.46634 0.26236 1.09861 0.40547
5797 15 3.10271 2.60411 3.15033 0.17642 15 - -
5798 1.38629 1.38629 1.38629 1.38629
5799 0.03659 4.01937 4.01937 1.46634 0.26236 1.09861 0.40547
5800 16 3.10271 2.60411 3.15033 0.17642 16 - -
5801 1.38629 1.38629 1.38629 1.38629
5802 0.03659 4.01937 4.01937 1.46634 0.26236 1.09861 0.40547
5803 17 3.44918 0.12831 3.49795 2.84068 17 - -
5804 1.38629 1.38629 1.38629 1.38629
5805 0.03659 4.01937 4.01937 1.46634 0.26236 1.09861 0.40547
5806 18 3.44918 0.12831 3.49795 2.84068 18 - -
5807 1.38629 1.38629 1.38629 1.38629
5808 0.03659 4.01937 4.01937 1.46634 0.26236 1.09861 0.40547
5809 19 2.95723 3.60189 0.11562 3.50803 19 - -
5810 1.38629 1.38629 1.38629 1.38629
5811 0.03659 4.01937 4.01937 1.46634 0.26236 1.09861 0.40547
5812 20 3.10271 2.60411 3.15033 0.17642 20 - -
5813 1.38629 1.38629 1.38629 1.38629
5814 0.03659 4.01937 4.01937 1.46634 0.26236 1.09861 0.40547
5815 21 0.28448 2.54998 2.51260 2.42523 21 - -
5816 1.38629 1.38629 1.38629 1.38629
5817 0.03659 4.01937 4.01937 1.46634 0.26236 1.09861 0.40547
5818 22 2.95723 3.60189 0.11562 3.50803 22 - -
5819 1.38629 1.38629 1.38629 1.38629
5820 0.03659 4.01937 4.01937 1.46634 0.26236 1.09861 0.40547
5821 23 2.95723 3.60189 0.11562 3.50803 23 - -
5822 1.38629 1.38629 1.38629 1.38629
5823 0.03659 4.01937 4.01937 1.46634 0.26236 1.09861 0.40547
5824 24 3.10271 2.60411 3.15033 0.17642 24 - -
5825 1.38629 1.38629 1.38629 1.38629
5826 0.03659 4.01937 4.01937 1.46634 0.26236 1.09861 0.40547
5827 25 2.95723 3.60189 0.11562 3.50803 25 - -
5828 1.38629 1.38629 1.38629 1.38629
5829 0.03659 4.01937 4.01937 1.46634 0.26236 1.09861 0.40547
5830 26 0.14007 3.39421 2.81098 3.29720 26 - -
5831 1.38629 1.38629 1.38629 1.38629
5832 0.03659 4.01937 4.01937 1.46634 0.26236 1.09861 0.40547
5833 27 0.14007 3.39421 2.81098 3.29720 27 - -
5834 1.38629 1.38629 1.38629 1.38629
5835 0.03659 4.01937 4.01937 1.46634 0.26236 1.09861 0.40547
5836 28 3.44918 0.12831 3.49795 2.84068 28 - -
5837 1.38629 1.38629 1.38629 1.38629
5838 0.03659 4.01937 4.01937 1.46634 0.26236 1.09861 0.40547
5839 29 3.44918 0.12831 3.49795 2.84068 29 - -
5840 1.38629 1.38629 1.38629 1.38629
5841 0.03659 4.01937 4.01937 1.46634 0.26236 1.09861 0.40547
5842 30 2.20930 2.40656 2.70539 0.31026 30 - -
5843 1.38629 1.38629 1.38629 1.38629
5844 0.03659 4.01937 4.01937 1.46634 0.26236 1.09861 0.40547
5845 31 2.95723 3.60189 0.11562 3.50803 31 - -
5846 1.38629 1.38629 1.38629 1.38629
5847 0.03659 4.01937 4.01937 1.46634 0.26236 1.09861 0.40547
5848 32 3.44918 0.12831 3.49795 2.84068 32 - -
5849 1.38629 1.38629 1.38629 1.38629
5850 0.03659 4.01937 4.01937 1.46634 0.26236 1.09861 0.40547
5851 33 2.95723 3.60189 0.11562 3.50803 33 - -
5852 1.38629 1.38629 1.38629 1.38629
5853 0.03659 4.01937 4.01937 1.46634 0.26236 1.09861 0.40547
5854 34 2.95723 3.60189 0.11562 3.50803 34 - -
5855 1.38629 1.38629 1.38629 1.38629
5856 0.03659 4.01937 4.01937 1.46634 0.26236 1.09861 0.40547
5857 35 0.14007 3.39421 2.81098 3.29720 35 - -
5858 1.38629 1.38629 1.38629 1.38629
5859 0.03659 4.01937 4.01937 1.46634 0.26236 1.09861 0.40547
5860 36 0.14007 3.39421 2.81098 3.29720 36 - -
5861 1.38629 1.38629 1.38629 1.38629
5862 0.03659 4.01937 4.01937 1.46634 0.26236 1.09861 0.40547
5863 37 2.95723 3.60189 0.11562 3.50803 37 - -
5864 1.38629 1.38629 1.38629 1.38629
5865 0.03659 4.01937 4.01937 1.46634 0.26236 1.09861 0.40547
5866 38 2.95723 3.60189 0.11562 3.50803 38 - -
5867 1.38629 1.38629 1.38629 1.38629
5868 0.03659 4.01937 4.01937 1.46634 0.26236 1.09861 0.40547
5869 39 0.14007 3.39421 2.81098 3.29720 39 - -
5870 1.38629 1.38629 1.38629 1.38629
5871 0.03659 4.01937 4.01937 1.46634 0.26236 1.09861 0.40547
5872 40 3.10271 2.60411 3.15033 0.17642 40 - -
5873 1.38629 1.38629 1.38629 1.38629
5874 0.03659 4.01937 4.01937 1.46634 0.26236 1.09861 0.40547
5875 41 3.44918 0.12831 3.49795 2.84068 41 - -
5876 1.38629 1.38629 1.38629 1.38629
5877 0.03659 4.01937 4.01937 1.46634 0.26236 1.09861 0.40547
5878 42 0.14007 3.39421 2.81098 3.29720 42 - -
5879 1.38629 1.38629 1.38629 1.38629
5880 0.03659 4.01937 4.01937 1.46634 0.26236 1.09861 0.40547
5881 43 3.10271 2.60411 3.15033 0.17642 43 - -
5882 1.38629 1.38629 1.38629 1.38629
5883 0.03659 4.01937 4.01937 1.46634 0.26236 1.09861 0.40547
5884 44 3.10271 2.60411 3.15033 0.17642 44 - -
5885 1.38629 1.38629 1.38629 1.38629
5886 0.03659 4.01937 4.01937 1.46634 0.26236 1.09861 0.40547
5887 45 0.14007 3.39421 2.81098 3.29720 45 - -
5888 1.38629 1.38629 1.38629 1.38629
5889 0.01846 4.00124 * 1.46634 0.26236 0.00000 *
5890 //
5891 HMMER3/b [3.0 | March 2010]
5892 NAME 1_SSU_Rhizaria_1_SSU_end_seven_long
5893 LENG 45
5894 ALPH DNA
5895 RF no
5896 CS no
5897 MAP yes
5898 DATE Sat Jan 7 02:46:56 2012
5899 NSEQ 79
5900 EFFN 3.273987
5901 CKSUM 3260105086
5902 STATS LOCAL MSV -7.8870 0.71932
5903 STATS LOCAL VITERBI -7.7661 0.71932
5904 STATS LOCAL FORWARD -3.9848 0.71932
5905 HMM A C G T
5906 m->m m->i m->d i->m i->i d->m d->d
5907 COMPO 1.27113 1.54768 1.24856 1.51492
5908 1.38629 1.38629 1.38629 1.38629
5909 0.03722 4.00259 4.00259 1.46634 0.26236 0.00000 *
5910 1 0.14399 3.36455 2.79170 3.26473 1 - -
5911 1.38629 1.38629 1.38629 1.38629
5912 0.03722 4.00259 4.00259 1.46634 0.26236 1.09861 0.40547
5913 2 2.93653 3.57178 0.11892 3.47480 2 - -
5914 1.38629 1.38629 1.38629 1.38629
5915 0.03722 4.00259 4.00259 1.46634 0.26236 1.09861 0.40547
5916 3 3.07277 2.58506 3.12153 0.18125 3 - -
5917 1.38629 1.38629 1.38629 1.38629
5918 0.03722 4.00259 4.00259 1.46634 0.26236 1.09861 0.40547
5919 4 3.41499 0.13239 3.46521 2.81579 4 - -
5920 1.38629 1.38629 1.38629 1.38629
5921 0.03722 4.00259 4.00259 1.46634 0.26236 1.09861 0.40547
5922 5 2.70587 3.46056 0.14274 3.35827 5 - -
5923 1.38629 1.38629 1.38629 1.38629
5924 0.03722 4.00259 4.00259 1.46634 0.26236 1.09861 0.40547
5925 6 3.07277 2.58506 3.12153 0.18125 6 - -
5926 1.38629 1.38629 1.38629 1.38629
5927 0.03722 4.00259 4.00259 1.46634 0.26236 1.09861 0.40547
5928 7 0.14399 3.36455 2.79170 3.26473 7 - -
5929 1.38629 1.38629 1.38629 1.38629
5930 0.03722 4.00259 4.00259 1.46634 0.26236 1.09861 0.40547
5931 8 0.14399 3.36455 2.79170 3.26473 8 - -
5932 1.38629 1.38629 1.38629 1.38629
5933 0.03722 4.00259 4.00259 1.46634 0.26236 1.09861 0.40547
5934 9 3.41499 0.13239 3.46521 2.81579 9 - -
5935 1.38629 1.38629 1.38629 1.38629
5936 0.03722 4.00259 4.00259 1.46634 0.26236 1.09861 0.40547
5937 10 0.14399 3.36455 2.79170 3.26473 10 - -
5938 1.38629 1.38629 1.38629 1.38629
5939 0.03722 4.00259 4.00259 1.46634 0.26236 1.09861 0.40547
5940 11 0.14399 3.36455 2.79170 3.26473 11 - -
5941 1.38629 1.38629 1.38629 1.38629
5942 0.03722 4.00259 4.00259 1.46634 0.26236 1.09861 0.40547
5943 12 2.81580 3.33051 0.15813 2.98316 12 - -
5944 1.38629 1.38629 1.38629 1.38629
5945 0.03722 4.00259 4.00259 1.46634 0.26236 1.09861 0.40547
5946 13 2.93653 3.57178 0.11892 3.47480 13 - -
5947 1.38629 1.38629 1.38629 1.38629
5948 0.03722 4.00259 4.00259 1.46634 0.26236 1.09861 0.40547
5949 14 3.41499 0.13239 3.46521 2.81579 14 - -
5950 1.38629 1.38629 1.38629 1.38629
5951 0.03722 4.00259 4.00259 1.46634 0.26236 1.09861 0.40547
5952 15 0.14399 3.36455 2.79170 3.26473 15 - -
5953 1.38629 1.38629 1.38629 1.38629
5954 0.03722 4.00259 4.00259 1.46634 0.26236 1.09861 0.40547
5955 16 3.07277 2.58506 3.12153 0.18125 16 - -
5956 1.38629 1.38629 1.38629 1.38629
5957 0.03722 4.00259 4.00259 1.46634 0.26236 1.09861 0.40547
5958 17 3.41499 0.13239 3.46521 2.81579 17 - -
5959 1.38629 1.38629 1.38629 1.38629
5960 0.03722 4.00259 4.00259 1.46634 0.26236 1.09861 0.40547
5961 18 2.93653 3.57178 0.11892 3.47480 18 - -
5962 1.38629 1.38629 1.38629 1.38629
5963 0.03722 4.00259 4.00259 1.46634 0.26236 1.09861 0.40547
5964 19 2.93653 3.57178 0.11892 3.47480 19 - -
5965 1.38629 1.38629 1.38629 1.38629
5966 0.03722 4.00259 4.00259 1.46634 0.26236 1.09861 0.40547
5967 20 3.07277 2.58506 3.12153 0.18125 20 - -
5968 1.38629 1.38629 1.38629 1.38629
5969 0.03722 4.00259 4.00259 1.46634 0.26236 1.09861 0.40547
5970 21 0.14399 3.36455 2.79170 3.26473 21 - -
5971 1.38629 1.38629 1.38629 1.38629
5972 0.03722 4.00259 4.00259 1.46634 0.26236 1.09861 0.40547
5973 22 2.93653 3.57178 0.11892 3.47480 22 - -
5974 1.38629 1.38629 1.38629 1.38629
5975 0.03722 4.00259 4.00259 1.46634 0.26236 1.09861 0.40547
5976 23 2.93653 3.57178 0.11892 3.47480 23 - -
5977 1.38629 1.38629 1.38629 1.38629
5978 0.03722 4.00259 4.00259 1.46634 0.26236 1.09861 0.40547
5979 24 3.07277 2.58506 3.12153 0.18125 24 - -
5980 1.38629 1.38629 1.38629 1.38629
5981 0.03722 4.00259 4.00259 1.46634 0.26236 1.09861 0.40547
5982 25 2.93653 3.57178 0.11892 3.47480 25 - -
5983 1.38629 1.38629 1.38629 1.38629
5984 0.03722 4.00259 4.00259 1.46634 0.26236 1.09861 0.40547
5985 26 0.14399 3.36455 2.79170 3.26473 26 - -
5986 1.38629 1.38629 1.38629 1.38629
5987 0.03722 4.00259 4.00259 1.46634 0.26236 1.09861 0.40547
5988 27 0.14399 3.36455 2.79170 3.26473 27 - -
5989 1.38629 1.38629 1.38629 1.38629
5990 0.03722 4.00259 4.00259 1.46634 0.26236 1.09861 0.40547
5991 28 3.41499 0.13239 3.46521 2.81579 28 - -
5992 1.38629 1.38629 1.38629 1.38629
5993 0.03722 4.00259 4.00259 1.46634 0.26236 1.09861 0.40547
5994 29 3.41499 0.13239 3.46521 2.81579 29 - -
5995 1.38629 1.38629 1.38629 1.38629
5996 0.03722 4.00259 4.00259 1.46634 0.26236 1.09861 0.40547
5997 30 3.07277 2.58506 3.12153 0.18125 30 - -
5998 1.38629 1.38629 1.38629 1.38629
5999 0.03722 4.00259 4.00259 1.46634 0.26236 1.09861 0.40547
6000 31 2.93653 3.57178 0.11892 3.47480 31 - -
6001 1.38629 1.38629 1.38629 1.38629
6002 0.03722 4.00259 4.00259 1.46634 0.26236 1.09861 0.40547
6003 32 3.23383 0.16151 3.12410 2.72178 32 - -
6004 1.38629 1.38629 1.38629 1.38629
6005 0.03722 4.00259 4.00259 1.46634 0.26236 1.09861 0.40547
6006 33 3.41499 0.13239 3.46521 2.81579 33 - -
6007 1.38629 1.38629 1.38629 1.38629
6008 0.03722 4.00259 4.00259 1.46634 0.26236 1.09861 0.40547
6009 34 2.93653 3.57178 0.11892 3.47480 34 - -
6010 1.38629 1.38629 1.38629 1.38629
6011 0.03722 4.00259 4.00259 1.46634 0.26236 1.09861 0.40547
6012 35 0.14399 3.36455 2.79170 3.26473 35 - -
6013 1.38629 1.38629 1.38629 1.38629
6014 0.03722 4.00259 4.00259 1.46634 0.26236 1.09861 0.40547
6015 36 3.07277 2.58506 3.12153 0.18125 36 - -
6016 1.38629 1.38629 1.38629 1.38629
6017 0.03722 4.00259 4.00259 1.46634 0.26236 1.09861 0.40547
6018 37 2.93653 3.57178 0.11892 3.47480 37 - -
6019 1.38629 1.38629 1.38629 1.38629
6020 0.03722 4.00259 4.00259 1.46634 0.26236 1.09861 0.40547
6021 38 2.93653 3.57178 0.11892 3.47480 38 - -
6022 1.38629 1.38629 1.38629 1.38629
6023 0.03722 4.00259 4.00259 1.46634 0.26236 1.09861 0.40547
6024 39 0.16135 3.29923 2.64224 3.19680 39 - -
6025 1.38629 1.38629 1.38629 1.38629
6026 0.03722 4.00259 4.00259 1.46634 0.26236 1.09861 0.40547
6027 40 3.07277 2.58506 3.12153 0.18125 40 - -
6028 1.38629 1.38629 1.38629 1.38629
6029 0.03722 4.00259 4.00259 1.46634 0.26236 1.09861 0.40547
6030 41 3.41499 0.13239 3.46521 2.81579 41 - -
6031 1.38629 1.38629 1.38629 1.38629
6032 0.03722 4.00259 4.00259 1.46634 0.26236 1.09861 0.40547
6033 42 0.14399 3.36455 2.79170 3.26473 42 - -
6034 1.38629 1.38629 1.38629 1.38629
6035 0.03722 4.00259 4.00259 1.46634 0.26236 1.09861 0.40547
6036 43 3.07277 2.58506 3.12153 0.18125 43 - -
6037 1.38629 1.38629 1.38629 1.38629
6038 0.03722 4.00259 4.00259 1.46634 0.26236 1.09861 0.40547
6039 44 2.92813 2.52850 2.81557 0.21461 44 - -
6040 1.38629 1.38629 1.38629 1.38629
6041 0.03722 4.00259 4.00259 1.46634 0.26236 1.09861 0.40547
6042 45 0.14399 3.36455 2.79170 3.26473 45 - -
6043 1.38629 1.38629 1.38629 1.38629
6044 0.01878 3.98416 * 1.46634 0.26236 0.00000 *
6045 //
6046 HMMER3/b [3.0 | March 2010]
6047 NAME 1_SSU_Rhizaria_1_SSU_end_three_long
6048 LENG 45
6049 ALPH DNA
6050 RF no
6051 CS no
6052 MAP yes
6053 DATE Sat Jan 7 02:46:01 2012
6054 NSEQ 9
6055 EFFN 3.256348
6056 CKSUM 428889299
6057 STATS LOCAL MSV -8.0515 0.71931
6058 STATS LOCAL VITERBI -7.6933 0.71931
6059 STATS LOCAL FORWARD -4.1243 0.71931
6060 HMM A C G T
6061 m->m m->i m->d i->m i->i d->m d->d
6062 COMPO 1.33223 1.49217 1.18880 1.57678
6063 1.38629 1.38629 1.38629 1.38629
6064 0.03734 3.99936 3.99936 1.46634 0.26236 0.00000 *
6065 1 0.14476 3.35879 2.78795 3.25843 1 - -
6066 1.38629 1.38629 1.38629 1.38629
6067 0.03734 3.99936 3.99936 1.46634 0.26236 1.09861 0.40547
6068 2 2.93249 3.56592 0.11958 3.46834 2 - -
6069 1.38629 1.38629 1.38629 1.38629
6070 0.03734 3.99936 3.99936 1.46634 0.26236 1.09861 0.40547
6071 3 3.06699 2.58138 3.11596 0.18220 3 - -
6072 1.38629 1.38629 1.38629 1.38629
6073 0.03734 3.99936 3.99936 1.46634 0.26236 1.09861 0.40547
6074 4 3.40835 0.13320 3.45885 2.81094 4 - -
6075 1.38629 1.38629 1.38629 1.38629
6076 0.03734 3.99936 3.99936 1.46634 0.26236 1.09861 0.40547
6077 5 2.93249 3.56592 0.11958 3.46834 5 - -
6078 1.38629 1.38629 1.38629 1.38629
6079 0.03734 3.99936 3.99936 1.46634 0.26236 1.09861 0.40547
6080 6 3.06699 2.58138 3.11596 0.18220 6 - -
6081 1.38629 1.38629 1.38629 1.38629
6082 0.03734 3.99936 3.99936 1.46634 0.26236 1.09861 0.40547
6083 7 0.14476 3.35879 2.78795 3.25843 7 - -
6084 1.38629 1.38629 1.38629 1.38629
6085 0.03734 3.99936 3.99936 1.46634 0.26236 1.09861 0.40547
6086 8 0.14476 3.35879 2.78795 3.25843 8 - -
6087 1.38629 1.38629 1.38629 1.38629
6088 0.03734 3.99936 3.99936 1.46634 0.26236 1.09861 0.40547
6089 9 3.40835 0.13320 3.45885 2.81094 9 - -
6090 1.38629 1.38629 1.38629 1.38629
6091 0.03734 3.99936 3.99936 1.46634 0.26236 1.09861 0.40547
6092 10 0.14476 3.35879 2.78795 3.25843 10 - -
6093 1.38629 1.38629 1.38629 1.38629
6094 0.03734 3.99936 3.99936 1.46634 0.26236 1.09861 0.40547
6095 11 0.14476 3.35879 2.78795 3.25843 11 - -
6096 1.38629 1.38629 1.38629 1.38629
6097 0.03734 3.99936 3.99936 1.46634 0.26236 1.09861 0.40547
6098 12 2.93249 3.56592 0.11958 3.46834 12 - -
6099 1.38629 1.38629 1.38629 1.38629
6100 0.03734 3.99936 3.99936 1.46634 0.26236 1.09861 0.40547
6101 13 2.93249 3.56592 0.11958 3.46834 13 - -
6102 1.38629 1.38629 1.38629 1.38629
6103 0.03734 3.99936 3.99936 1.46634 0.26236 1.09861 0.40547
6104 14 3.06699 2.58138 3.11596 0.18220 14 - -
6105 1.38629 1.38629 1.38629 1.38629
6106 0.03734 3.99936 3.99936 1.46634 0.26236 1.09861 0.40547
6107 15 3.06699 2.58138 3.11596 0.18220 15 - -
6108 1.38629 1.38629 1.38629 1.38629
6109 0.03734 3.99936 3.99936 1.46634 0.26236 1.09861 0.40547
6110 16 3.06699 2.58138 3.11596 0.18220 16 - -
6111 1.38629 1.38629 1.38629 1.38629
6112 0.03734 3.99936 3.99936 1.46634 0.26236 1.09861 0.40547
6113 17 3.40835 0.13320 3.45885 2.81094 17 - -
6114 1.38629 1.38629 1.38629 1.38629
6115 0.03734 3.99936 3.99936 1.46634 0.26236 1.09861 0.40547
6116 18 3.40835 0.13320 3.45885 2.81094 18 - -
6117 1.38629 1.38629 1.38629 1.38629
6118 0.03734 3.99936 3.99936 1.46634 0.26236 1.09861 0.40547
6119 19 2.93249 3.56592 0.11958 3.46834 19 - -
6120 1.38629 1.38629 1.38629 1.38629
6121 0.03734 3.99936 3.99936 1.46634 0.26236 1.09861 0.40547
6122 20 3.06699 2.58138 3.11596 0.18220 20 - -
6123 1.38629 1.38629 1.38629 1.38629
6124 0.03734 3.99936 3.99936 1.46634 0.26236 1.09861 0.40547
6125 21 0.14476 3.35879 2.78795 3.25843 21 - -
6126 1.38629 1.38629 1.38629 1.38629
6127 0.03734 3.99936 3.99936 1.46634 0.26236 1.09861 0.40547
6128 22 2.93249 3.56592 0.11958 3.46834 22 - -
6129 1.38629 1.38629 1.38629 1.38629
6130 0.03734 3.99936 3.99936 1.46634 0.26236 1.09861 0.40547
6131 23 2.93249 3.56592 0.11958 3.46834 23 - -
6132 1.38629 1.38629 1.38629 1.38629
6133 0.03734 3.99936 3.99936 1.46634 0.26236 1.09861 0.40547
6134 24 3.06699 2.58138 3.11596 0.18220 24 - -
6135 1.38629 1.38629 1.38629 1.38629
6136 0.03734 3.99936 3.99936 1.46634 0.26236 1.09861 0.40547
6137 25 2.93249 3.56592 0.11958 3.46834 25 - -
6138 1.38629 1.38629 1.38629 1.38629
6139 0.03734 3.99936 3.99936 1.46634 0.26236 1.09861 0.40547
6140 26 0.14476 3.35879 2.78795 3.25843 26 - -
6141 1.38629 1.38629 1.38629 1.38629
6142 0.03734 3.99936 3.99936 1.46634 0.26236 1.09861 0.40547
6143 27 0.14476 3.35879 2.78795 3.25843 27 - -
6144 1.38629 1.38629 1.38629 1.38629
6145 0.03734 3.99936 3.99936 1.46634 0.26236 1.09861 0.40547
6146 28 3.40835 0.13320 3.45885 2.81094 28 - -
6147 1.38629 1.38629 1.38629 1.38629
6148 0.03734 3.99936 3.99936 1.46634 0.26236 1.09861 0.40547
6149 29 3.40835 0.13320 3.45885 2.81094 29 - -
6150 1.38629 1.38629 1.38629 1.38629
6151 0.03734 3.99936 3.99936 1.46634 0.26236 1.09861 0.40547
6152 30 3.06699 2.58138 3.11596 0.18220 30 - -
6153 1.38629 1.38629 1.38629 1.38629
6154 0.03734 3.99936 3.99936 1.46634 0.26236 1.09861 0.40547
6155 31 2.93249 3.56592 0.11958 3.46834 31 - -
6156 1.38629 1.38629 1.38629 1.38629
6157 0.03734 3.99936 3.99936 1.46634 0.26236 1.09861 0.40547
6158 32 3.40835 0.13320 3.45885 2.81094 32 - -
6159 1.38629 1.38629 1.38629 1.38629
6160 0.03734 3.99936 3.99936 1.46634 0.26236 1.09861 0.40547
6161 33 2.93249 3.56592 0.11958 3.46834 33 - -
6162 1.38629 1.38629 1.38629 1.38629
6163 0.03734 3.99936 3.99936 1.46634 0.26236 1.09861 0.40547
6164 34 2.93249 3.56592 0.11958 3.46834 34 - -
6165 1.38629 1.38629 1.38629 1.38629
6166 0.03734 3.99936 3.99936 1.46634 0.26236 1.09861 0.40547
6167 35 0.14476 3.35879 2.78795 3.25843 35 - -
6168 1.38629 1.38629 1.38629 1.38629
6169 0.03734 3.99936 3.99936 1.46634 0.26236 1.09861 0.40547
6170 36 0.14476 3.35879 2.78795 3.25843 36 - -
6171 1.38629 1.38629 1.38629 1.38629
6172 0.03734 3.99936 3.99936 1.46634 0.26236 1.09861 0.40547
6173 37 2.93249 3.56592 0.11958 3.46834 37 - -
6174 1.38629 1.38629 1.38629 1.38629
6175 0.03734 3.99936 3.99936 1.46634 0.26236 1.09861 0.40547
6176 38 2.93249 3.56592 0.11958 3.46834 38 - -
6177 1.38629 1.38629 1.38629 1.38629
6178 0.03734 3.99936 3.99936 1.46634 0.26236 1.09861 0.40547
6179 39 0.14476 3.35879 2.78795 3.25843 39 - -
6180 1.38629 1.38629 1.38629 1.38629
6181 0.03734 3.99936 3.99936 1.46634 0.26236 1.09861 0.40547
6182 40 3.06699 2.58138 3.11596 0.18220 40 - -
6183 1.38629 1.38629 1.38629 1.38629
6184 0.03734 3.99936 3.99936 1.46634 0.26236 1.09861 0.40547
6185 41 3.40835 0.13320 3.45885 2.81094 41 - -
6186 1.38629 1.38629 1.38629 1.38629
6187 0.03734 3.99936 3.99936 1.46634 0.26236 1.09861 0.40547
6188 42 0.14476 3.35879 2.78795 3.25843 42 - -
6189 1.38629 1.38629 1.38629 1.38629
6190 0.03734 3.99936 3.99936 1.46634 0.26236 1.09861 0.40547
6191 43 3.40835 0.13320 3.45885 2.81094 43 - -
6192 1.38629 1.38629 1.38629 1.38629
6193 0.03734 3.99936 3.99936 1.46634 0.26236 1.09861 0.40547
6194 44 2.67630 0.40722 2.74549 1.60214 44 - -
6195 1.38629 1.38629 1.38629 1.38629
6196 0.03734 3.99936 3.99936 1.46634 0.26236 1.09861 0.40547
6197 45 2.93249 3.56592 0.11958 3.46834 45 - -
6198 1.38629 1.38629 1.38629 1.38629
6199 0.01885 3.98087 * 1.46634 0.26236 0.00000 *
6200 //
6201 HMMER3/b [3.0 | March 2010]
6202 NAME 1_SSU_Rhizaria_1_SSU_end_two_long
6203 LENG 45
6204 ALPH DNA
6205 RF no
6206 CS no
6207 MAP yes
6208 DATE Sat Jan 7 02:45:51 2012
6209 NSEQ 7
6210 EFFN 3.250488
6211 CKSUM 1479234683
6212 STATS LOCAL MSV -7.8550 0.71933
6213 STATS LOCAL VITERBI -7.6574 0.71933
6214 STATS LOCAL FORWARD -3.9885 0.71933
6215 HMM A C G T
6216 m->m m->i m->d i->m i->i d->m d->d
6217 COMPO 1.27354 1.45969 1.38387 1.43866
6218 1.38629 1.38629 1.38629 1.38629
6219 0.03738 3.99829 3.99829 1.46634 0.26236 0.00000 *
6220 1 3.40613 0.13347 3.45673 2.80932 1 - -
6221 1.38629 1.38629 1.38629 1.38629
6222 0.03738 3.99829 3.99829 1.46634 0.26236 1.09861 0.40547
6223 2 0.14502 3.35687 2.78670 3.25633 2 - -
6224 1.38629 1.38629 1.38629 1.38629
6225 0.03738 3.99829 3.99829 1.46634 0.26236 1.09861 0.40547
6226 3 3.06506 2.58015 3.11411 0.18252 3 - -
6227 1.38629 1.38629 1.38629 1.38629
6228 0.03738 3.99829 3.99829 1.46634 0.26236 1.09861 0.40547
6229 4 2.93114 3.56396 0.11980 3.46618 4 - -
6230 1.38629 1.38629 1.38629 1.38629
6231 0.03738 3.99829 3.99829 1.46634 0.26236 1.09861 0.40547
6232 5 3.40613 0.13347 3.45673 2.80932 5 - -
6233 1.38629 1.38629 1.38629 1.38629
6234 0.03738 3.99829 3.99829 1.46634 0.26236 1.09861 0.40547
6235 6 0.14502 3.35687 2.78670 3.25633 6 - -
6236 1.38629 1.38629 1.38629 1.38629
6237 0.03738 3.99829 3.99829 1.46634 0.26236 1.09861 0.40547
6238 7 3.40613 0.13347 3.45673 2.80932 7 - -
6239 1.38629 1.38629 1.38629 1.38629
6240 0.03738 3.99829 3.99829 1.46634 0.26236 1.09861 0.40547
6241 8 0.14502 3.35687 2.78670 3.25633 8 - -
6242 1.38629 1.38629 1.38629 1.38629
6243 0.03738 3.99829 3.99829 1.46634 0.26236 1.09861 0.40547
6244 9 3.06506 2.58015 3.11411 0.18252 9 - -
6245 1.38629 1.38629 1.38629 1.38629
6246 0.03738 3.99829 3.99829 1.46634 0.26236 1.09861 0.40547
6247 10 0.14502 3.35687 2.78670 3.25633 10 - -
6248 1.38629 1.38629 1.38629 1.38629
6249 0.03738 3.99829 3.99829 1.46634 0.26236 1.09861 0.40547
6250 11 3.06506 2.58015 3.11411 0.18252 11 - -
6251 1.38629 1.38629 1.38629 1.38629
6252 0.03738 3.99829 3.99829 1.46634 0.26236 1.09861 0.40547
6253 12 0.14502 3.35687 2.78670 3.25633 12 - -
6254 1.38629 1.38629 1.38629 1.38629
6255 0.03738 3.99829 3.99829 1.46634 0.26236 1.09861 0.40547
6256 13 3.40613 0.13347 3.45673 2.80932 13 - -
6257 1.38629 1.38629 1.38629 1.38629
6258 0.03738 3.99829 3.99829 1.46634 0.26236 1.09861 0.40547
6259 14 2.93114 3.56396 0.11980 3.46618 14 - -
6260 1.38629 1.38629 1.38629 1.38629
6261 0.03738 3.99829 3.99829 1.46634 0.26236 1.09861 0.40547
6262 15 3.06506 2.58015 3.11411 0.18252 15 - -
6263 1.38629 1.38629 1.38629 1.38629
6264 0.03738 3.99829 3.99829 1.46634 0.26236 1.09861 0.40547
6265 16 3.06506 2.58015 3.11411 0.18252 16 - -
6266 1.38629 1.38629 1.38629 1.38629
6267 0.03738 3.99829 3.99829 1.46634 0.26236 1.09861 0.40547
6268 17 3.40613 0.13347 3.45673 2.80932 17 - -
6269 1.38629 1.38629 1.38629 1.38629
6270 0.03738 3.99829 3.99829 1.46634 0.26236 1.09861 0.40547
6271 18 3.40613 0.13347 3.45673 2.80932 18 - -
6272 1.38629 1.38629 1.38629 1.38629
6273 0.03738 3.99829 3.99829 1.46634 0.26236 1.09861 0.40547
6274 19 2.93114 3.56396 0.11980 3.46618 19 - -
6275 1.38629 1.38629 1.38629 1.38629
6276 0.03738 3.99829 3.99829 1.46634 0.26236 1.09861 0.40547
6277 20 3.06506 2.58015 3.11411 0.18252 20 - -
6278 1.38629 1.38629 1.38629 1.38629
6279 0.03738 3.99829 3.99829 1.46634 0.26236 1.09861 0.40547
6280 21 0.14502 3.35687 2.78670 3.25633 21 - -
6281 1.38629 1.38629 1.38629 1.38629
6282 0.12968 3.99829 2.27038 1.46634 0.26236 1.09861 0.40547
6283 22 2.81175 3.39405 0.14077 3.27968 22 - -
6284 1.38629 1.38629 1.38629 1.38629
6285 0.04093 3.90954 3.90954 1.46634 0.26236 0.30403 1.33879
6286 23 2.93114 3.56396 0.11980 3.46618 23 - -
6287 1.38629 1.38629 1.38629 1.38629
6288 0.03738 3.99829 3.99829 1.46634 0.26236 1.09861 0.40547
6289 24 3.06506 2.58015 3.11411 0.18252 24 - -
6290 1.38629 1.38629 1.38629 1.38629
6291 0.03738 3.99829 3.99829 1.46634 0.26236 1.09861 0.40547
6292 25 2.93114 3.56396 0.11980 3.46618 25 - -
6293 1.38629 1.38629 1.38629 1.38629
6294 0.03738 3.99829 3.99829 1.46634 0.26236 1.09861 0.40547
6295 26 0.14502 3.35687 2.78670 3.25633 26 - -
6296 1.38629 1.38629 1.38629 1.38629
6297 0.03738 3.99829 3.99829 1.46634 0.26236 1.09861 0.40547
6298 27 0.14502 3.35687 2.78670 3.25633 27 - -
6299 1.38629 1.38629 1.38629 1.38629
6300 0.03738 3.99829 3.99829 1.46634 0.26236 1.09861 0.40547
6301 28 3.40613 0.13347 3.45673 2.80932 28 - -
6302 1.38629 1.38629 1.38629 1.38629
6303 0.03738 3.99829 3.99829 1.46634 0.26236 1.09861 0.40547
6304 29 3.40613 0.13347 3.45673 2.80932 29 - -
6305 1.38629 1.38629 1.38629 1.38629
6306 0.03738 3.99829 3.99829 1.46634 0.26236 1.09861 0.40547
6307 30 3.06506 2.58015 3.11411 0.18252 30 - -
6308 1.38629 1.38629 1.38629 1.38629
6309 0.03738 3.99829 3.99829 1.46634 0.26236 1.09861 0.40547
6310 31 2.93114 3.56396 0.11980 3.46618 31 - -
6311 1.38629 1.38629 1.38629 1.38629
6312 0.03738 3.99829 3.99829 1.46634 0.26236 1.09861 0.40547
6313 32 3.40613 0.13347 3.45673 2.80932 32 - -
6314 1.38629 1.38629 1.38629 1.38629
6315 0.03738 3.99829 3.99829 1.46634 0.26236 1.09861 0.40547
6316 33 2.93114 3.56396 0.11980 3.46618 33 - -
6317 1.38629 1.38629 1.38629 1.38629
6318 0.03738 3.99829 3.99829 1.46634 0.26236 1.09861 0.40547
6319 34 2.93114 3.56396 0.11980 3.46618 34 - -
6320 1.38629 1.38629 1.38629 1.38629
6321 0.03738 3.99829 3.99829 1.46634 0.26236 1.09861 0.40547
6322 35 0.14502 3.35687 2.78670 3.25633 35 - -
6323 1.38629 1.38629 1.38629 1.38629
6324 0.03738 3.99829 3.99829 1.46634 0.26236 1.09861 0.40547
6325 36 0.14502 3.35687 2.78670 3.25633 36 - -
6326 1.38629 1.38629 1.38629 1.38629
6327 0.03738 3.99829 3.99829 1.46634 0.26236 1.09861 0.40547
6328 37 2.93114 3.56396 0.11980 3.46618 37 - -
6329 1.38629 1.38629 1.38629 1.38629
6330 0.03738 3.99829 3.99829 1.46634 0.26236 1.09861 0.40547
6331 38 2.93114 3.56396 0.11980 3.46618 38 - -
6332 1.38629 1.38629 1.38629 1.38629
6333 0.03738 3.99829 3.99829 1.46634 0.26236 1.09861 0.40547
6334 39 0.14502 3.35687 2.78670 3.25633 39 - -
6335 1.38629 1.38629 1.38629 1.38629
6336 0.03738 3.99829 3.99829 1.46634 0.26236 1.09861 0.40547
6337 40 3.06506 2.58015 3.11411 0.18252 40 - -
6338 1.38629 1.38629 1.38629 1.38629
6339 0.03738 3.99829 3.99829 1.46634 0.26236 1.09861 0.40547
6340 41 3.40613 0.13347 3.45673 2.80932 41 - -
6341 1.38629 1.38629 1.38629 1.38629
6342 0.03738 3.99829 3.99829 1.46634 0.26236 1.09861 0.40547
6343 42 0.14502 3.35687 2.78670 3.25633 42 - -
6344 1.38629 1.38629 1.38629 1.38629
6345 0.03738 3.99829 3.99829 1.46634 0.26236 1.09861 0.40547
6346 43 3.06506 2.58015 3.11411 0.18252 43 - -
6347 1.38629 1.38629 1.38629 1.38629
6348 0.03738 3.99829 3.99829 1.46634 0.26236 1.09861 0.40547
6349 44 3.06506 2.58015 3.11411 0.18252 44 - -
6350 1.38629 1.38629 1.38629 1.38629
6351 0.03738 3.99829 3.99829 1.46634 0.26236 1.09861 0.40547
6352 45 0.14502 3.35687 2.78670 3.25633 45 - -
6353 1.38629 1.38629 1.38629 1.38629
6354 0.01887 3.97977 * 1.46634 0.26236 0.00000 *
6355 //