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comparison ITSx_db/HMMs/C.hmm @ 0:57e76d405a97 draft default tip

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date Mon, 14 Mar 2016 16:15:08 -0400
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-1:000000000000 0:57e76d405a97
1 HMMER3/b [3.0 | March 2010]
2 NAME 3_End_Bacillariophyta_58S_end_eight_long
3 LENG 45
4 ALPH DNA
5 RF no
6 CS no
7 MAP yes
8 DATE Fri Jan 20 11:42:32 2012
9 NSEQ 5
10 EFFN 3.325195
11 CKSUM 993487011
12 STATS LOCAL MSV -8.1073 0.71931
13 STATS LOCAL VITERBI -7.7843 0.71931
14 STATS LOCAL FORWARD -3.8720 0.71931
15 HMM A C G T
16 m->m m->i m->d i->m i->i d->m d->d
17 COMPO 1.47720 1.44778 1.45140 1.19603
18 1.38629 1.38629 1.38629 1.38629
19 0.03687 4.01190 4.01190 1.46634 0.26236 0.00000 *
20 1 2.94809 3.58857 0.11707 3.49333 1 - -
21 1.38629 1.38629 1.38629 1.38629
22 0.03687 4.01190 4.01190 1.46634 0.26236 1.09861 0.40547
23 2 3.43404 0.13010 3.48346 2.82967 2 - -
24 1.38629 1.38629 1.38629 1.38629
25 0.03687 4.01190 4.01190 1.46634 0.26236 1.09861 0.40547
26 3 2.94809 3.58857 0.11707 3.49333 3 - -
27 1.38629 1.38629 1.38629 1.38629
28 0.03687 4.01190 4.01190 1.46634 0.26236 1.09861 0.40547
29 4 3.43404 0.13010 3.48346 2.82967 4 - -
30 1.38629 1.38629 1.38629 1.38629
31 0.03687 4.01190 4.01190 1.46634 0.26236 1.09861 0.40547
32 5 3.08942 2.59566 3.13755 0.17855 5 - -
33 1.38629 1.38629 1.38629 1.38629
34 0.03687 4.01190 4.01190 1.46634 0.26236 1.09861 0.40547
35 6 0.14179 3.38107 2.80245 3.28281 6 - -
36 1.38629 1.38629 1.38629 1.38629
37 0.03687 4.01190 4.01190 1.46634 0.26236 1.09861 0.40547
38 7 3.43404 0.13010 3.48346 2.82967 7 - -
39 1.38629 1.38629 1.38629 1.38629
40 0.03687 4.01190 4.01190 1.46634 0.26236 1.09861 0.40547
41 8 3.08942 2.59566 3.13755 0.17855 8 - -
42 1.38629 1.38629 1.38629 1.38629
43 0.03687 4.01190 4.01190 1.46634 0.26236 1.09861 0.40547
44 9 2.94809 3.58857 0.11707 3.49333 9 - -
45 1.38629 1.38629 1.38629 1.38629
46 0.03687 4.01190 4.01190 1.46634 0.26236 1.09861 0.40547
47 10 0.14179 3.38107 2.80245 3.28281 10 - -
48 1.38629 1.38629 1.38629 1.38629
49 0.03687 4.01190 4.01190 1.46634 0.26236 1.09861 0.40547
50 11 2.94809 3.58857 0.11707 3.49333 11 - -
51 1.38629 1.38629 1.38629 1.38629
52 0.03687 4.01190 4.01190 1.46634 0.26236 1.09861 0.40547
53 12 3.08942 2.59566 3.13755 0.17855 12 - -
54 1.38629 1.38629 1.38629 1.38629
55 0.03687 4.01190 4.01190 1.46634 0.26236 1.09861 0.40547
56 13 0.14179 3.38107 2.80245 3.28281 13 - -
57 1.38629 1.38629 1.38629 1.38629
58 0.03687 4.01190 4.01190 1.46634 0.26236 1.09861 0.40547
59 14 0.14179 3.38107 2.80245 3.28281 14 - -
60 1.38629 1.38629 1.38629 1.38629
61 0.03687 4.01190 4.01190 1.46634 0.26236 1.09861 0.40547
62 15 3.08942 2.59566 3.13755 0.17855 15 - -
63 1.38629 1.38629 1.38629 1.38629
64 0.03687 4.01190 4.01190 1.46634 0.26236 1.09861 0.40547
65 16 3.43404 0.13010 3.48346 2.82967 16 - -
66 1.38629 1.38629 1.38629 1.38629
67 0.03687 4.01190 4.01190 1.46634 0.26236 1.09861 0.40547
68 17 3.08942 2.59566 3.13755 0.17855 17 - -
69 1.38629 1.38629 1.38629 1.38629
70 0.03687 4.01190 4.01190 1.46634 0.26236 1.09861 0.40547
71 18 3.43404 0.13010 3.48346 2.82967 18 - -
72 1.38629 1.38629 1.38629 1.38629
73 0.03687 4.01190 4.01190 1.46634 0.26236 1.09861 0.40547
74 19 0.14179 3.38107 2.80245 3.28281 19 - -
75 1.38629 1.38629 1.38629 1.38629
76 0.03687 4.01190 4.01190 1.46634 0.26236 1.09861 0.40547
77 20 2.94809 3.58857 0.11707 3.49333 20 - -
78 1.38629 1.38629 1.38629 1.38629
79 0.03687 4.01190 4.01190 1.46634 0.26236 1.09861 0.40547
80 21 3.08942 2.59566 3.13755 0.17855 21 - -
81 1.38629 1.38629 1.38629 1.38629
82 0.03687 4.01190 4.01190 1.46634 0.26236 1.09861 0.40547
83 22 0.14179 3.38107 2.80245 3.28281 22 - -
84 1.38629 1.38629 1.38629 1.38629
85 0.03687 4.01190 4.01190 1.46634 0.26236 1.09861 0.40547
86 23 2.94809 3.58857 0.11707 3.49333 23 - -
87 1.38629 1.38629 1.38629 1.38629
88 0.03687 4.01190 4.01190 1.46634 0.26236 1.09861 0.40547
89 24 3.43404 0.13010 3.48346 2.82967 24 - -
90 1.38629 1.38629 1.38629 1.38629
91 0.03687 4.01190 4.01190 1.46634 0.26236 1.09861 0.40547
92 25 0.14179 3.38107 2.80245 3.28281 25 - -
93 1.38629 1.38629 1.38629 1.38629
94 0.03687 4.01190 4.01190 1.46634 0.26236 1.09861 0.40547
95 26 3.08942 2.59566 3.13755 0.17855 26 - -
96 1.38629 1.38629 1.38629 1.38629
97 0.03687 4.01190 4.01190 1.46634 0.26236 1.09861 0.40547
98 27 2.94809 3.58857 0.11707 3.49333 27 - -
99 1.38629 1.38629 1.38629 1.38629
100 0.03687 4.01190 4.01190 1.46634 0.26236 1.09861 0.40547
101 28 3.43404 0.13010 3.48346 2.82967 28 - -
102 1.38629 1.38629 1.38629 1.38629
103 0.03687 4.01190 4.01190 1.46634 0.26236 1.09861 0.40547
104 29 3.08942 2.59566 3.13755 0.17855 29 - -
105 1.38629 1.38629 1.38629 1.38629
106 0.03687 4.01190 4.01190 1.46634 0.26236 1.09861 0.40547
107 30 3.08942 2.59566 3.13755 0.17855 30 - -
108 1.38629 1.38629 1.38629 1.38629
109 0.03687 4.01190 4.01190 1.46634 0.26236 1.09861 0.40547
110 31 0.14179 3.38107 2.80245 3.28281 31 - -
111 1.38629 1.38629 1.38629 1.38629
112 0.03687 4.01190 4.01190 1.46634 0.26236 1.09861 0.40547
113 32 3.08942 2.59566 3.13755 0.17855 32 - -
114 1.38629 1.38629 1.38629 1.38629
115 0.03687 4.01190 4.01190 1.46634 0.26236 1.09861 0.40547
116 33 3.43404 0.13010 3.48346 2.82967 33 - -
117 1.38629 1.38629 1.38629 1.38629
118 0.03687 4.01190 4.01190 1.46634 0.26236 1.09861 0.40547
119 34 3.08942 2.59566 3.13755 0.17855 34 - -
120 1.38629 1.38629 1.38629 1.38629
121 0.03687 4.01190 4.01190 1.46634 0.26236 1.09861 0.40547
122 35 2.94809 3.58857 0.11707 3.49333 35 - -
123 1.38629 1.38629 1.38629 1.38629
124 0.03687 4.01190 4.01190 1.46634 0.26236 1.09861 0.40547
125 36 0.14179 3.38107 2.80245 3.28281 36 - -
126 1.38629 1.38629 1.38629 1.38629
127 0.03687 4.01190 4.01190 1.46634 0.26236 1.09861 0.40547
128 37 2.94809 3.58857 0.11707 3.49333 37 - -
129 1.38629 1.38629 1.38629 1.38629
130 0.03687 4.01190 4.01190 1.46634 0.26236 1.09861 0.40547
131 38 3.08942 2.59566 3.13755 0.17855 38 - -
132 1.38629 1.38629 1.38629 1.38629
133 0.03687 4.01190 4.01190 1.46634 0.26236 1.09861 0.40547
134 39 2.94809 3.58857 0.11707 3.49333 39 - -
135 1.38629 1.38629 1.38629 1.38629
136 0.03687 4.01190 4.01190 1.46634 0.26236 1.09861 0.40547
137 40 3.08942 2.59566 3.13755 0.17855 40 - -
138 1.38629 1.38629 1.38629 1.38629
139 0.03687 4.01190 4.01190 1.46634 0.26236 1.09861 0.40547
140 41 3.43404 0.13010 3.48346 2.82967 41 - -
141 1.38629 1.38629 1.38629 1.38629
142 0.03687 4.01190 4.01190 1.46634 0.26236 1.09861 0.40547
143 42 3.08942 2.59566 3.13755 0.17855 42 - -
144 1.38629 1.38629 1.38629 1.38629
145 0.03687 4.01190 4.01190 1.46634 0.26236 1.09861 0.40547
146 43 3.43404 0.13010 3.48346 2.82967 43 - -
147 1.38629 1.38629 1.38629 1.38629
148 0.03687 4.01190 4.01190 1.46634 0.26236 1.09861 0.40547
149 44 3.08942 2.59566 3.13755 0.17855 44 - -
150 1.38629 1.38629 1.38629 1.38629
151 0.03687 4.01190 4.01190 1.46634 0.26236 1.09861 0.40547
152 45 0.14179 3.38107 2.80245 3.28281 45 - -
153 1.38629 1.38629 1.38629 1.38629
154 0.01860 3.99364 * 1.46634 0.26236 0.00000 *
155 //
156 HMMER3/b [3.0 | March 2010]
157 NAME 3_End_Bacillariophyta_58S_end_eleven_long
158 LENG 45
159 ALPH DNA
160 RF no
161 CS no
162 MAP yes
163 DATE Fri Jan 20 11:42:57 2012
164 NSEQ 2
165 EFFN 2.000000
166 CKSUM 1905173856
167 STATS LOCAL MSV -7.3409 0.72899
168 STATS LOCAL VITERBI -8.2416 0.72899
169 STATS LOCAL FORWARD -3.1425 0.72899
170 HMM A C G T
171 m->m m->i m->d i->m i->i d->m d->d
172 COMPO 1.58317 1.38125 1.35645 1.25234
173 1.38629 1.38629 1.38629 1.38629
174 0.04879 3.73767 3.73767 1.46634 0.26236 0.00000 *
175 1 2.81865 0.23582 2.88868 2.35662 1 - -
176 1.38629 1.38629 1.38629 1.38629
177 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
178 2 2.53331 3.02441 0.20344 2.88069 2 - -
179 1.38629 1.38629 1.38629 1.38629
180 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
181 3 2.81865 0.23582 2.88868 2.35662 3 - -
182 1.38629 1.38629 1.38629 1.38629
183 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
184 4 2.57915 2.25909 2.64442 0.28946 4 - -
185 1.38629 1.38629 1.38629 1.38629
186 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
187 5 2.57915 2.25909 2.64442 0.28946 5 - -
188 1.38629 1.38629 1.38629 1.38629
189 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
190 6 2.57915 2.25909 2.64442 0.28946 6 - -
191 1.38629 1.38629 1.38629 1.38629
192 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
193 7 2.57915 2.25909 2.64442 0.28946 7 - -
194 1.38629 1.38629 1.38629 1.38629
195 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
196 8 2.53331 3.02441 0.20344 2.88069 8 - -
197 1.38629 1.38629 1.38629 1.38629
198 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
199 9 2.53331 3.02441 0.20344 2.88069 9 - -
200 1.38629 1.38629 1.38629 1.38629
201 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
202 10 2.53331 3.02441 0.20344 2.88069 10 - -
203 1.38629 1.38629 1.38629 1.38629
204 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
205 11 2.57915 2.25909 2.64442 0.28946 11 - -
206 1.38629 1.38629 1.38629 1.38629
207 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
208 12 0.23862 2.84929 2.43386 2.70756 12 - -
209 1.38629 1.38629 1.38629 1.38629
210 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
211 13 0.23862 2.84929 2.43386 2.70756 13 - -
212 1.38629 1.38629 1.38629 1.38629
213 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
214 14 2.57915 2.25909 2.64442 0.28946 14 - -
215 1.38629 1.38629 1.38629 1.38629
216 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
217 15 1.89532 1.96405 1.06955 1.00436 15 - -
218 1.38629 1.38629 1.38629 1.38629
219 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
220 16 2.81865 0.23582 2.88868 2.35662 16 - -
221 1.38629 1.38629 1.38629 1.38629
222 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
223 17 2.81865 0.23582 2.88868 2.35662 17 - -
224 1.38629 1.38629 1.38629 1.38629
225 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
226 18 2.81865 0.23582 2.88868 2.35662 18 - -
227 1.38629 1.38629 1.38629 1.38629
228 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
229 19 0.23862 2.84929 2.43386 2.70756 19 - -
230 1.38629 1.38629 1.38629 1.38629
231 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
232 20 0.23862 2.84929 2.43386 2.70756 20 - -
233 1.38629 1.38629 1.38629 1.38629
234 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
235 21 2.53331 3.02441 0.20344 2.88069 21 - -
236 1.38629 1.38629 1.38629 1.38629
237 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
238 22 0.23862 2.84929 2.43386 2.70756 22 - -
239 1.38629 1.38629 1.38629 1.38629
240 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
241 23 2.53331 3.02441 0.20344 2.88069 23 - -
242 1.38629 1.38629 1.38629 1.38629
243 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
244 24 2.81865 0.23582 2.88868 2.35662 24 - -
245 1.38629 1.38629 1.38629 1.38629
246 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
247 25 0.23862 2.84929 2.43386 2.70756 25 - -
248 1.38629 1.38629 1.38629 1.38629
249 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
250 26 2.57915 2.25909 2.64442 0.28946 26 - -
251 1.38629 1.38629 1.38629 1.38629
252 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
253 27 2.53331 3.02441 0.20344 2.88069 27 - -
254 1.38629 1.38629 1.38629 1.38629
255 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
256 28 2.81865 0.23582 2.88868 2.35662 28 - -
257 1.38629 1.38629 1.38629 1.38629
258 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
259 29 2.57915 2.25909 2.64442 0.28946 29 - -
260 1.38629 1.38629 1.38629 1.38629
261 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
262 30 2.57915 2.25909 2.64442 0.28946 30 - -
263 1.38629 1.38629 1.38629 1.38629
264 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
265 31 0.23862 2.84929 2.43386 2.70756 31 - -
266 1.38629 1.38629 1.38629 1.38629
267 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
268 32 2.57915 2.25909 2.64442 0.28946 32 - -
269 1.38629 1.38629 1.38629 1.38629
270 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
271 33 2.81865 0.23582 2.88868 2.35662 33 - -
272 1.38629 1.38629 1.38629 1.38629
273 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
274 34 2.57915 2.25909 2.64442 0.28946 34 - -
275 1.38629 1.38629 1.38629 1.38629
276 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
277 35 2.53331 3.02441 0.20344 2.88069 35 - -
278 1.38629 1.38629 1.38629 1.38629
279 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
280 36 0.23862 2.84929 2.43386 2.70756 36 - -
281 1.38629 1.38629 1.38629 1.38629
282 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
283 37 2.53331 3.02441 0.20344 2.88069 37 - -
284 1.38629 1.38629 1.38629 1.38629
285 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
286 38 2.57915 2.25909 2.64442 0.28946 38 - -
287 1.38629 1.38629 1.38629 1.38629
288 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
289 39 2.53331 3.02441 0.20344 2.88069 39 - -
290 1.38629 1.38629 1.38629 1.38629
291 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
292 40 2.57915 2.25909 2.64442 0.28946 40 - -
293 1.38629 1.38629 1.38629 1.38629
294 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
295 41 2.81865 0.23582 2.88868 2.35662 41 - -
296 1.38629 1.38629 1.38629 1.38629
297 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
298 42 2.81865 0.23582 2.88868 2.35662 42 - -
299 1.38629 1.38629 1.38629 1.38629
300 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
301 43 2.81865 0.23582 2.88868 2.35662 43 - -
302 1.38629 1.38629 1.38629 1.38629
303 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
304 44 2.57915 2.25909 2.64442 0.28946 44 - -
305 1.38629 1.38629 1.38629 1.38629
306 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
307 45 2.53331 3.02441 0.20344 2.88069 45 - -
308 1.38629 1.38629 1.38629 1.38629
309 0.02469 3.71357 * 1.46634 0.26236 0.00000 *
310 //
311 HMMER3/b [3.0 | March 2010]
312 NAME 3_End_Bacillariophyta_58S_end_five_long
313 LENG 45
314 ALPH DNA
315 RF no
316 CS no
317 MAP yes
318 DATE Fri Jan 20 11:42:02 2012
319 NSEQ 2
320 EFFN 2.000000
321 CKSUM 890636672
322 STATS LOCAL MSV -7.3435 0.72851
323 STATS LOCAL VITERBI -8.2240 0.72851
324 STATS LOCAL FORWARD -3.2698 0.72851
325 HMM A C G T
326 m->m m->i m->d i->m i->i d->m d->d
327 COMPO 1.70415 1.39193 1.19561 1.32067
328 1.38629 1.38629 1.38629 1.38629
329 0.04879 3.73767 3.73767 1.46634 0.26236 0.00000 *
330 1 2.57915 2.25909 2.64442 0.28946 1 - -
331 1.38629 1.38629 1.38629 1.38629
332 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
333 2 2.53331 3.02441 0.20344 2.88069 2 - -
334 1.38629 1.38629 1.38629 1.38629
335 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
336 3 2.81865 0.23582 2.88868 2.35662 3 - -
337 1.38629 1.38629 1.38629 1.38629
338 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
339 4 2.57915 2.25909 2.64442 0.28946 4 - -
340 1.38629 1.38629 1.38629 1.38629
341 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
342 5 2.81865 0.23582 2.88868 2.35662 5 - -
343 1.38629 1.38629 1.38629 1.38629
344 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
345 6 2.81865 0.23582 2.88868 2.35662 6 - -
346 1.38629 1.38629 1.38629 1.38629
347 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
348 7 2.81865 0.23582 2.88868 2.35662 7 - -
349 1.38629 1.38629 1.38629 1.38629
350 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
351 8 2.53331 3.02441 0.20344 2.88069 8 - -
352 1.38629 1.38629 1.38629 1.38629
353 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
354 9 2.53331 3.02441 0.20344 2.88069 9 - -
355 1.38629 1.38629 1.38629 1.38629
356 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
357 10 2.53331 3.02441 0.20344 2.88069 10 - -
358 1.38629 1.38629 1.38629 1.38629
359 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
360 11 0.23862 2.84929 2.43386 2.70756 11 - -
361 1.38629 1.38629 1.38629 1.38629
362 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
363 12 0.23862 2.84929 2.43386 2.70756 12 - -
364 1.38629 1.38629 1.38629 1.38629
365 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
366 13 2.57915 2.25909 2.64442 0.28946 13 - -
367 1.38629 1.38629 1.38629 1.38629
368 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
369 14 2.81865 0.23582 2.88868 2.35662 14 - -
370 1.38629 1.38629 1.38629 1.38629
371 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
372 15 2.57915 2.25909 2.64442 0.28946 15 - -
373 1.38629 1.38629 1.38629 1.38629
374 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
375 16 2.81865 0.23582 2.88868 2.35662 16 - -
376 1.38629 1.38629 1.38629 1.38629
377 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
378 17 2.81865 0.23582 2.88868 2.35662 17 - -
379 1.38629 1.38629 1.38629 1.38629
380 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
381 18 2.57915 2.25909 2.64442 0.28946 18 - -
382 1.38629 1.38629 1.38629 1.38629
383 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
384 19 2.53331 3.02441 0.20344 2.88069 19 - -
385 1.38629 1.38629 1.38629 1.38629
386 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
387 20 2.53331 3.02441 0.20344 2.88069 20 - -
388 1.38629 1.38629 1.38629 1.38629
389 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
390 21 0.92825 2.28391 0.95698 2.13014 21 - -
391 1.38629 1.38629 1.38629 1.38629
392 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
393 22 0.23862 2.84929 2.43386 2.70756 22 - -
394 1.38629 1.38629 1.38629 1.38629
395 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
396 23 2.53331 3.02441 0.20344 2.88069 23 - -
397 1.38629 1.38629 1.38629 1.38629
398 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
399 24 2.81865 0.23582 2.88868 2.35662 24 - -
400 1.38629 1.38629 1.38629 1.38629
401 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
402 25 0.23862 2.84929 2.43386 2.70756 25 - -
403 1.38629 1.38629 1.38629 1.38629
404 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
405 26 2.57915 2.25909 2.64442 0.28946 26 - -
406 1.38629 1.38629 1.38629 1.38629
407 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
408 27 2.53331 3.02441 0.20344 2.88069 27 - -
409 1.38629 1.38629 1.38629 1.38629
410 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
411 28 2.81865 0.23582 2.88868 2.35662 28 - -
412 1.38629 1.38629 1.38629 1.38629
413 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
414 29 2.57915 2.25909 2.64442 0.28946 29 - -
415 1.38629 1.38629 1.38629 1.38629
416 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
417 30 2.57915 2.25909 2.64442 0.28946 30 - -
418 1.38629 1.38629 1.38629 1.38629
419 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
420 31 2.53331 3.02441 0.20344 2.88069 31 - -
421 1.38629 1.38629 1.38629 1.38629
422 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
423 32 2.57915 2.25909 2.64442 0.28946 32 - -
424 1.38629 1.38629 1.38629 1.38629
425 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
426 33 2.81865 0.23582 2.88868 2.35662 33 - -
427 1.38629 1.38629 1.38629 1.38629
428 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
429 34 2.57915 2.25909 2.64442 0.28946 34 - -
430 1.38629 1.38629 1.38629 1.38629
431 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
432 35 2.53331 3.02441 0.20344 2.88069 35 - -
433 1.38629 1.38629 1.38629 1.38629
434 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
435 36 0.23862 2.84929 2.43386 2.70756 36 - -
436 1.38629 1.38629 1.38629 1.38629
437 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
438 37 2.53331 3.02441 0.20344 2.88069 37 - -
439 1.38629 1.38629 1.38629 1.38629
440 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
441 38 2.57915 2.25909 2.64442 0.28946 38 - -
442 1.38629 1.38629 1.38629 1.38629
443 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
444 39 2.53331 3.02441 0.20344 2.88069 39 - -
445 1.38629 1.38629 1.38629 1.38629
446 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
447 40 2.57915 2.25909 2.64442 0.28946 40 - -
448 1.38629 1.38629 1.38629 1.38629
449 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
450 41 2.81865 0.23582 2.88868 2.35662 41 - -
451 1.38629 1.38629 1.38629 1.38629
452 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
453 42 0.23862 2.84929 2.43386 2.70756 42 - -
454 1.38629 1.38629 1.38629 1.38629
455 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
456 43 2.53331 3.02441 0.20344 2.88069 43 - -
457 1.38629 1.38629 1.38629 1.38629
458 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
459 44 2.57915 2.25909 2.64442 0.28946 44 - -
460 1.38629 1.38629 1.38629 1.38629
461 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
462 45 2.53331 3.02441 0.20344 2.88069 45 - -
463 1.38629 1.38629 1.38629 1.38629
464 0.02469 3.71357 * 1.46634 0.26236 0.00000 *
465 //
466 HMMER3/b [3.0 | March 2010]
467 NAME 3_End_Bacillariophyta_58S_end_four_long
468 LENG 45
469 ALPH DNA
470 RF no
471 CS no
472 MAP yes
473 DATE Fri Jan 20 11:41:55 2012
474 NSEQ 10
475 EFFN 3.911133
476 CKSUM 2203677874
477 STATS LOCAL MSV -6.7587 0.71932
478 STATS LOCAL VITERBI -7.5461 0.71932
479 STATS LOCAL FORWARD -4.0750 0.71932
480 HMM A C G T
481 m->m m->i m->d i->m i->i d->m d->d
482 COMPO 1.79364 1.27971 1.26811 1.29402
483 1.38629 1.38629 1.38629 1.38629
484 0.03327 4.11270 4.11270 1.46634 0.26236 0.00000 *
485 1 3.62901 0.10909 3.66977 2.96962 1 - -
486 1.38629 1.38629 1.38629 1.38629
487 0.03327 4.11270 4.11270 1.46634 0.26236 1.09861 0.40547
488 2 3.06354 3.75846 0.10007 3.68147 2 - -
489 1.38629 1.38629 1.38629 1.38629
490 0.03327 4.11270 4.11270 1.46634 0.26236 1.09861 0.40547
491 3 3.62901 0.10909 3.66977 2.96962 3 - -
492 1.38629 1.38629 1.38629 1.38629
493 0.03327 4.11270 4.11270 1.46634 0.26236 1.09861 0.40547
494 4 3.26490 2.70698 3.30619 0.15268 4 - -
495 1.38629 1.38629 1.38629 1.38629
496 0.03327 4.11270 4.11270 1.46634 0.26236 1.09861 0.40547
497 5 2.30468 2.26386 1.44279 0.57983 5 - -
498 1.38629 1.38629 1.38629 1.38629
499 0.03327 4.11270 4.11270 1.46634 0.26236 1.09861 0.40547
500 6 3.62901 0.10909 3.66977 2.96962 6 - -
501 1.38629 1.38629 1.38629 1.38629
502 0.03327 4.11270 4.11270 1.46634 0.26236 1.09861 0.40547
503 7 3.62901 0.10909 3.66977 2.96962 7 - -
504 1.38629 1.38629 1.38629 1.38629
505 0.03327 4.11270 4.11270 1.46634 0.26236 1.09861 0.40547
506 8 0.43462 2.80486 1.50107 2.67242 8 - -
507 1.38629 1.38629 1.38629 1.38629
508 0.03327 4.11270 4.11270 1.46634 0.26236 1.09861 0.40547
509 9 3.06354 3.75846 0.10007 3.68147 9 - -
510 1.38629 1.38629 1.38629 1.38629
511 0.03327 4.11270 4.11270 1.46634 0.26236 1.09861 0.40547
512 10 3.06354 3.75846 0.10007 3.68147 10 - -
513 1.38629 1.38629 1.38629 1.38629
514 0.03327 4.11270 4.11270 1.46634 0.26236 1.09861 0.40547
515 11 0.12122 3.55145 2.91224 3.46977 11 - -
516 1.38629 1.38629 1.38629 1.38629
517 0.03327 4.11270 4.11270 1.46634 0.26236 1.09861 0.40547
518 12 0.57930 2.38745 2.30805 1.39276 12 - -
519 1.38629 1.38629 1.38629 1.38629
520 0.03327 4.11270 4.11270 1.46634 0.26236 1.09861 0.40547
521 13 3.26490 2.70698 3.30619 0.15268 13 - -
522 1.38629 1.38629 1.38629 1.38629
523 0.03327 4.11270 4.11270 1.46634 0.26236 1.09861 0.40547
524 14 3.26490 2.70698 3.30619 0.15268 14 - -
525 1.38629 1.38629 1.38629 1.38629
526 0.03327 4.11270 4.11270 1.46634 0.26236 1.09861 0.40547
527 15 3.26490 2.70698 3.30619 0.15268 15 - -
528 1.38629 1.38629 1.38629 1.38629
529 0.03327 4.11270 4.11270 1.46634 0.26236 1.09861 0.40547
530 16 3.62901 0.10909 3.66977 2.96962 16 - -
531 1.38629 1.38629 1.38629 1.38629
532 0.03327 4.11270 4.11270 1.46634 0.26236 1.09861 0.40547
533 17 3.62901 0.10909 3.66977 2.96962 17 - -
534 1.38629 1.38629 1.38629 1.38629
535 0.03327 4.11270 4.11270 1.46634 0.26236 1.09861 0.40547
536 18 3.26490 2.70698 3.30619 0.15268 18 - -
537 1.38629 1.38629 1.38629 1.38629
538 0.03327 4.11270 4.11270 1.46634 0.26236 1.09861 0.40547
539 19 3.06354 3.75846 0.10007 3.68147 19 - -
540 1.38629 1.38629 1.38629 1.38629
541 0.03327 4.11270 4.11270 1.46634 0.26236 1.09861 0.40547
542 20 3.06354 3.75846 0.10007 3.68147 20 - -
543 1.38629 1.38629 1.38629 1.38629
544 0.03327 4.11270 4.11270 1.46634 0.26236 1.09861 0.40547
545 21 2.21486 2.22095 1.21311 0.72350 21 - -
546 1.38629 1.38629 1.38629 1.38629
547 0.03327 4.11270 4.11270 1.46634 0.26236 1.09861 0.40547
548 22 0.12122 3.55145 2.91224 3.46977 22 - -
549 1.38629 1.38629 1.38629 1.38629
550 0.03327 4.11270 4.11270 1.46634 0.26236 1.09861 0.40547
551 23 3.06354 3.75846 0.10007 3.68147 23 - -
552 1.38629 1.38629 1.38629 1.38629
553 0.03327 4.11270 4.11270 1.46634 0.26236 1.09861 0.40547
554 24 3.62901 0.10909 3.66977 2.96962 24 - -
555 1.38629 1.38629 1.38629 1.38629
556 0.03327 4.11270 4.11270 1.46634 0.26236 1.09861 0.40547
557 25 0.12122 3.55145 2.91224 3.46977 25 - -
558 1.38629 1.38629 1.38629 1.38629
559 0.03327 4.11270 4.11270 1.46634 0.26236 1.09861 0.40547
560 26 3.26490 2.70698 3.30619 0.15268 26 - -
561 1.38629 1.38629 1.38629 1.38629
562 0.03327 4.11270 4.11270 1.46634 0.26236 1.09861 0.40547
563 27 3.06354 3.75846 0.10007 3.68147 27 - -
564 1.38629 1.38629 1.38629 1.38629
565 0.03327 4.11270 4.11270 1.46634 0.26236 1.09861 0.40547
566 28 3.62901 0.10909 3.66977 2.96962 28 - -
567 1.38629 1.38629 1.38629 1.38629
568 0.03327 4.11270 4.11270 1.46634 0.26236 1.09861 0.40547
569 29 3.26490 2.70698 3.30619 0.15268 29 - -
570 1.38629 1.38629 1.38629 1.38629
571 0.03327 4.11270 4.11270 1.46634 0.26236 1.09861 0.40547
572 30 3.26490 2.70698 3.30619 0.15268 30 - -
573 1.38629 1.38629 1.38629 1.38629
574 0.03327 4.11270 4.11270 1.46634 0.26236 1.09861 0.40547
575 31 3.06354 3.75846 0.10007 3.68147 31 - -
576 1.38629 1.38629 1.38629 1.38629
577 0.03327 4.11270 4.11270 1.46634 0.26236 1.09861 0.40547
578 32 3.26490 2.70698 3.30619 0.15268 32 - -
579 1.38629 1.38629 1.38629 1.38629
580 0.03327 4.11270 4.11270 1.46634 0.26236 1.09861 0.40547
581 33 3.62901 0.10909 3.66977 2.96962 33 - -
582 1.38629 1.38629 1.38629 1.38629
583 0.03327 4.11270 4.11270 1.46634 0.26236 1.09861 0.40547
584 34 3.26490 2.70698 3.30619 0.15268 34 - -
585 1.38629 1.38629 1.38629 1.38629
586 0.03327 4.11270 4.11270 1.46634 0.26236 1.09861 0.40547
587 35 3.06354 3.75846 0.10007 3.68147 35 - -
588 1.38629 1.38629 1.38629 1.38629
589 0.03327 4.11270 4.11270 1.46634 0.26236 1.09861 0.40547
590 36 0.12122 3.55145 2.91224 3.46977 36 - -
591 1.38629 1.38629 1.38629 1.38629
592 0.03327 4.11270 4.11270 1.46634 0.26236 1.09861 0.40547
593 37 3.06354 3.75846 0.10007 3.68147 37 - -
594 1.38629 1.38629 1.38629 1.38629
595 0.03327 4.11270 4.11270 1.46634 0.26236 1.09861 0.40547
596 38 3.26490 2.70698 3.30619 0.15268 38 - -
597 1.38629 1.38629 1.38629 1.38629
598 0.03327 4.11270 4.11270 1.46634 0.26236 1.09861 0.40547
599 39 3.06354 3.75846 0.10007 3.68147 39 - -
600 1.38629 1.38629 1.38629 1.38629
601 0.03327 4.11270 4.11270 1.46634 0.26236 1.09861 0.40547
602 40 2.56277 1.19555 2.63128 0.60078 40 - -
603 1.38629 1.38629 1.38629 1.38629
604 0.03327 4.11270 4.11270 1.46634 0.26236 1.09861 0.40547
605 41 3.62901 0.10909 3.66977 2.96962 41 - -
606 1.38629 1.38629 1.38629 1.38629
607 0.03327 4.11270 4.11270 1.46634 0.26236 1.09861 0.40547
608 42 3.62901 0.10909 3.66977 2.96962 42 - -
609 1.38629 1.38629 1.38629 1.38629
610 0.03327 4.11270 4.11270 1.46634 0.26236 1.09861 0.40547
611 43 3.06354 3.75846 0.10007 3.68147 43 - -
612 1.38629 1.38629 1.38629 1.38629
613 0.03327 4.11270 4.11270 1.46634 0.26236 1.09861 0.40547
614 44 3.62901 0.10909 3.66977 2.96962 44 - -
615 1.38629 1.38629 1.38629 1.38629
616 0.03327 4.11270 4.11270 1.46634 0.26236 1.09861 0.40547
617 45 0.12122 3.55145 2.91224 3.46977 45 - -
618 1.38629 1.38629 1.38629 1.38629
619 0.01678 4.09620 * 1.46634 0.26236 0.00000 *
620 //
621 HMMER3/b [3.0 | March 2010]
622 NAME 3_End_Bacillariophyta_58S_end_nine_long
623 LENG 45
624 ALPH DNA
625 RF no
626 CS no
627 MAP yes
628 DATE Fri Jan 20 11:42:40 2012
629 NSEQ 4
630 EFFN 3.261719
631 CKSUM 2263622984
632 STATS LOCAL MSV -8.0863 0.71933
633 STATS LOCAL VITERBI -7.4913 0.71933
634 STATS LOCAL FORWARD -4.0857 0.71933
635 HMM A C G T
636 m->m m->i m->d i->m i->i d->m d->d
637 COMPO 1.55533 1.31636 1.38475 1.30791
638 1.38629 1.38629 1.38629 1.38629
639 0.03731 4.00035 4.00035 1.46634 0.26236 0.00000 *
640 1 3.41037 0.13295 3.46079 2.81242 1 - -
641 1.38629 1.38629 1.38629 1.38629
642 0.03731 4.00035 4.00035 1.46634 0.26236 1.09861 0.40547
643 2 2.93372 3.56771 0.11938 3.47031 2 - -
644 1.38629 1.38629 1.38629 1.38629
645 0.03731 4.00035 4.00035 1.46634 0.26236 1.09861 0.40547
646 3 3.41037 0.13295 3.46079 2.81242 3 - -
647 1.38629 1.38629 1.38629 1.38629
648 0.03731 4.00035 4.00035 1.46634 0.26236 1.09861 0.40547
649 4 3.06875 2.58250 3.11766 0.18191 4 - -
650 1.38629 1.38629 1.38629 1.38629
651 0.03731 4.00035 4.00035 1.46634 0.26236 1.09861 0.40547
652 5 3.06875 2.58250 3.11766 0.18191 5 - -
653 1.38629 1.38629 1.38629 1.38629
654 0.03731 4.00035 4.00035 1.46634 0.26236 1.09861 0.40547
655 6 3.06875 2.58250 3.11766 0.18191 6 - -
656 1.38629 1.38629 1.38629 1.38629
657 0.03731 4.00035 4.00035 1.46634 0.26236 1.09861 0.40547
658 7 3.06875 2.58250 3.11766 0.18191 7 - -
659 1.38629 1.38629 1.38629 1.38629
660 0.03731 4.00035 4.00035 1.46634 0.26236 1.09861 0.40547
661 8 2.93372 3.56771 0.11938 3.47031 8 - -
662 1.38629 1.38629 1.38629 1.38629
663 0.03731 4.00035 4.00035 1.46634 0.26236 1.09861 0.40547
664 9 2.93372 3.56771 0.11938 3.47031 9 - -
665 1.38629 1.38629 1.38629 1.38629
666 0.03731 4.00035 4.00035 1.46634 0.26236 1.09861 0.40547
667 10 2.93372 3.56771 0.11938 3.47031 10 - -
668 1.38629 1.38629 1.38629 1.38629
669 0.03731 4.00035 4.00035 1.46634 0.26236 1.09861 0.40547
670 11 3.06875 2.58250 3.11766 0.18191 11 - -
671 1.38629 1.38629 1.38629 1.38629
672 0.03731 4.00035 4.00035 1.46634 0.26236 1.09861 0.40547
673 12 0.14453 3.36055 2.78910 3.26035 12 - -
674 1.38629 1.38629 1.38629 1.38629
675 0.03731 4.00035 4.00035 1.46634 0.26236 1.09861 0.40547
676 13 0.14453 3.36055 2.78910 3.26035 13 - -
677 1.38629 1.38629 1.38629 1.38629
678 0.03731 4.00035 4.00035 1.46634 0.26236 1.09861 0.40547
679 14 3.06875 2.58250 3.11766 0.18191 14 - -
680 1.38629 1.38629 1.38629 1.38629
681 0.03731 4.00035 4.00035 1.46634 0.26236 1.09861 0.40547
682 15 2.93372 3.56771 0.11938 3.47031 15 - -
683 1.38629 1.38629 1.38629 1.38629
684 0.03731 4.00035 4.00035 1.46634 0.26236 1.09861 0.40547
685 16 3.41037 0.13295 3.46079 2.81242 16 - -
686 1.38629 1.38629 1.38629 1.38629
687 0.03731 4.00035 4.00035 1.46634 0.26236 1.09861 0.40547
688 17 3.41037 0.13295 3.46079 2.81242 17 - -
689 1.38629 1.38629 1.38629 1.38629
690 0.03731 4.00035 4.00035 1.46634 0.26236 1.09861 0.40547
691 18 3.41037 0.13295 3.46079 2.81242 18 - -
692 1.38629 1.38629 1.38629 1.38629
693 0.03731 4.00035 4.00035 1.46634 0.26236 1.09861 0.40547
694 19 0.14453 3.36055 2.78910 3.26035 19 - -
695 1.38629 1.38629 1.38629 1.38629
696 0.03731 4.00035 4.00035 1.46634 0.26236 1.09861 0.40547
697 20 0.14453 3.36055 2.78910 3.26035 20 - -
698 1.38629 1.38629 1.38629 1.38629
699 0.03731 4.00035 4.00035 1.46634 0.26236 1.09861 0.40547
700 21 2.93372 3.56771 0.11938 3.47031 21 - -
701 1.38629 1.38629 1.38629 1.38629
702 0.03731 4.00035 4.00035 1.46634 0.26236 1.09861 0.40547
703 22 0.14453 3.36055 2.78910 3.26035 22 - -
704 1.38629 1.38629 1.38629 1.38629
705 0.03731 4.00035 4.00035 1.46634 0.26236 1.09861 0.40547
706 23 2.93372 3.56771 0.11938 3.47031 23 - -
707 1.38629 1.38629 1.38629 1.38629
708 0.03731 4.00035 4.00035 1.46634 0.26236 1.09861 0.40547
709 24 3.41037 0.13295 3.46079 2.81242 24 - -
710 1.38629 1.38629 1.38629 1.38629
711 0.03731 4.00035 4.00035 1.46634 0.26236 1.09861 0.40547
712 25 0.14453 3.36055 2.78910 3.26035 25 - -
713 1.38629 1.38629 1.38629 1.38629
714 0.03731 4.00035 4.00035 1.46634 0.26236 1.09861 0.40547
715 26 3.06875 2.58250 3.11766 0.18191 26 - -
716 1.38629 1.38629 1.38629 1.38629
717 0.03731 4.00035 4.00035 1.46634 0.26236 1.09861 0.40547
718 27 2.93372 3.56771 0.11938 3.47031 27 - -
719 1.38629 1.38629 1.38629 1.38629
720 0.03731 4.00035 4.00035 1.46634 0.26236 1.09861 0.40547
721 28 3.41037 0.13295 3.46079 2.81242 28 - -
722 1.38629 1.38629 1.38629 1.38629
723 0.03731 4.00035 4.00035 1.46634 0.26236 1.09861 0.40547
724 29 3.06875 2.58250 3.11766 0.18191 29 - -
725 1.38629 1.38629 1.38629 1.38629
726 0.03731 4.00035 4.00035 1.46634 0.26236 1.09861 0.40547
727 30 3.41037 0.13295 3.46079 2.81242 30 - -
728 1.38629 1.38629 1.38629 1.38629
729 0.03731 4.00035 4.00035 1.46634 0.26236 1.09861 0.40547
730 31 0.14453 3.36055 2.78910 3.26035 31 - -
731 1.38629 1.38629 1.38629 1.38629
732 0.03731 4.00035 4.00035 1.46634 0.26236 1.09861 0.40547
733 32 3.06875 2.58250 3.11766 0.18191 32 - -
734 1.38629 1.38629 1.38629 1.38629
735 0.03731 4.00035 4.00035 1.46634 0.26236 1.09861 0.40547
736 33 3.41037 0.13295 3.46079 2.81242 33 - -
737 1.38629 1.38629 1.38629 1.38629
738 0.03731 4.00035 4.00035 1.46634 0.26236 1.09861 0.40547
739 34 3.06875 2.58250 3.11766 0.18191 34 - -
740 1.38629 1.38629 1.38629 1.38629
741 0.03731 4.00035 4.00035 1.46634 0.26236 1.09861 0.40547
742 35 2.93372 3.56771 0.11938 3.47031 35 - -
743 1.38629 1.38629 1.38629 1.38629
744 0.03731 4.00035 4.00035 1.46634 0.26236 1.09861 0.40547
745 36 0.14453 3.36055 2.78910 3.26035 36 - -
746 1.38629 1.38629 1.38629 1.38629
747 0.03731 4.00035 4.00035 1.46634 0.26236 1.09861 0.40547
748 37 2.93372 3.56771 0.11938 3.47031 37 - -
749 1.38629 1.38629 1.38629 1.38629
750 0.03731 4.00035 4.00035 1.46634 0.26236 1.09861 0.40547
751 38 3.06875 2.58250 3.11766 0.18191 38 - -
752 1.38629 1.38629 1.38629 1.38629
753 0.03731 4.00035 4.00035 1.46634 0.26236 1.09861 0.40547
754 39 2.93372 3.56771 0.11938 3.47031 39 - -
755 1.38629 1.38629 1.38629 1.38629
756 0.03731 4.00035 4.00035 1.46634 0.26236 1.09861 0.40547
757 40 3.06875 2.58250 3.11766 0.18191 40 - -
758 1.38629 1.38629 1.38629 1.38629
759 0.03731 4.00035 4.00035 1.46634 0.26236 1.09861 0.40547
760 41 3.06875 2.58250 3.11766 0.18191 41 - -
761 1.38629 1.38629 1.38629 1.38629
762 0.03731 4.00035 4.00035 1.46634 0.26236 1.09861 0.40547
763 42 3.41037 0.13295 3.46079 2.81242 42 - -
764 1.38629 1.38629 1.38629 1.38629
765 0.03731 4.00035 4.00035 1.46634 0.26236 1.09861 0.40547
766 43 3.41037 0.13295 3.46079 2.81242 43 - -
767 1.38629 1.38629 1.38629 1.38629
768 0.03731 4.00035 4.00035 1.46634 0.26236 1.09861 0.40547
769 44 3.41037 0.13295 3.46079 2.81242 44 - -
770 1.38629 1.38629 1.38629 1.38629
771 0.03731 4.00035 4.00035 1.46634 0.26236 1.09861 0.40547
772 45 0.14453 3.36055 2.78910 3.26035 45 - -
773 1.38629 1.38629 1.38629 1.38629
774 0.01883 3.98187 * 1.46634 0.26236 0.00000 *
775 //
776 HMMER3/b [3.0 | March 2010]
777 NAME 3_End_Bacillariophyta_58S_end_one_long
778 LENG 45
779 ALPH DNA
780 RF no
781 CS no
782 MAP yes
783 DATE Fri Jan 20 11:41:30 2012
784 NSEQ 59
785 EFFN 3.647888
786 CKSUM 3784598376
787 STATS LOCAL MSV -7.5123 0.71931
788 STATS LOCAL VITERBI -7.6643 0.71931
789 STATS LOCAL FORWARD -3.7443 0.71931
790 HMM A C G T
791 m->m m->i m->d i->m i->i d->m d->d
792 COMPO 2.05601 1.44140 1.19427 1.10107
793 1.38629 1.38629 1.38629 1.38629
794 0.03480 4.06867 4.06867 1.46634 0.26236 0.00000 *
795 1 3.41829 0.14399 3.46727 2.65739 1 - -
796 1.38629 1.38629 1.38629 1.38629
797 0.03480 4.06867 4.06867 1.46634 0.26236 1.09861 0.40547
798 2 3.01518 3.68691 0.10686 3.60210 2 - -
799 1.38629 1.38629 1.38629 1.38629
800 0.03480 4.06867 4.06867 1.46634 0.26236 1.09861 0.40547
801 3 3.54642 0.11747 3.59094 2.91079 3 - -
802 1.38629 1.38629 1.38629 1.38629
803 0.03480 4.06867 4.06867 1.46634 0.26236 1.09861 0.40547
804 4 3.18936 2.65909 3.23362 0.16325 4 - -
805 1.38629 1.38629 1.38629 1.38629
806 0.03480 4.06867 4.06867 1.46634 0.26236 1.09861 0.40547
807 5 3.18936 2.65909 3.23362 0.16325 5 - -
808 1.38629 1.38629 1.38629 1.38629
809 0.03480 4.06867 4.06867 1.46634 0.26236 1.09861 0.40547
810 6 3.18936 2.65909 3.23362 0.16325 6 - -
811 1.38629 1.38629 1.38629 1.38629
812 0.03480 4.06867 4.06867 1.46634 0.26236 1.09861 0.40547
813 7 3.54642 0.11747 3.59094 2.91079 7 - -
814 1.38629 1.38629 1.38629 1.38629
815 0.03480 4.06867 4.06867 1.46634 0.26236 1.09861 0.40547
816 8 2.77197 3.57920 0.12898 3.48770 8 - -
817 1.38629 1.38629 1.38629 1.38629
818 0.03480 4.06867 4.06867 1.46634 0.26236 1.09861 0.40547
819 9 3.01518 3.68691 0.10686 3.60210 9 - -
820 1.38629 1.38629 1.38629 1.38629
821 0.03480 4.06867 4.06867 1.46634 0.26236 1.09861 0.40547
822 10 3.01518 3.68691 0.10686 3.60210 10 - -
823 1.38629 1.38629 1.38629 1.38629
824 0.11547 4.06867 2.38648 1.46634 0.26236 1.09861 0.40547
825 11 0.14684 3.34355 2.77801 3.24176 11 - -
826 1.38629 1.38629 1.38629 1.38629
827 0.03767 3.99086 3.99086 1.46634 0.26236 0.31622 1.30526
828 12 3.18936 2.65909 3.23362 0.16325 12 - -
829 1.38629 1.38629 1.38629 1.38629
830 0.03480 4.06867 4.06867 1.46634 0.26236 1.09861 0.40547
831 13 1.98689 2.10855 2.53472 0.41222 13 - -
832 1.38629 1.38629 1.38629 1.38629
833 0.04625 4.06867 3.57210 1.46634 0.26236 1.09861 0.40547
834 14 3.17011 2.64688 3.21512 0.16608 14 - -
835 1.38629 1.38629 1.38629 1.38629
836 0.03519 4.05761 4.05761 1.46634 0.26236 0.79626 0.59968
837 15 3.18936 2.65909 3.23362 0.16325 15 - -
838 1.38629 1.38629 1.38629 1.38629
839 0.03480 4.06867 4.06867 1.46634 0.26236 1.09861 0.40547
840 16 3.54642 0.11747 3.59094 2.91079 16 - -
841 1.38629 1.38629 1.38629 1.38629
842 0.03480 4.06867 4.06867 1.46634 0.26236 1.09861 0.40547
843 17 3.54642 0.11747 3.59094 2.91079 17 - -
844 1.38629 1.38629 1.38629 1.38629
845 0.03480 4.06867 4.06867 1.46634 0.26236 1.09861 0.40547
846 18 3.22867 0.19096 3.28418 2.33560 18 - -
847 1.38629 1.38629 1.38629 1.38629
848 0.03480 4.06867 4.06867 1.46634 0.26236 1.09861 0.40547
849 19 3.01518 3.68691 0.10686 3.60210 19 - -
850 1.38629 1.38629 1.38629 1.38629
851 0.03480 4.06867 4.06867 1.46634 0.26236 1.09861 0.40547
852 20 2.46891 3.41562 0.16720 3.31221 20 - -
853 1.38629 1.38629 1.38629 1.38629
854 0.03480 4.06867 4.06867 1.46634 0.26236 1.09861 0.40547
855 21 2.58996 2.39964 2.06152 0.34677 21 - -
856 1.38629 1.38629 1.38629 1.38629
857 0.03480 4.06867 4.06867 1.46634 0.26236 1.09861 0.40547
858 22 0.12953 3.47895 2.86567 3.39012 22 - -
859 1.38629 1.38629 1.38629 1.38629
860 0.03480 4.06867 4.06867 1.46634 0.26236 1.09861 0.40547
861 23 3.01518 3.68691 0.10686 3.60210 23 - -
862 1.38629 1.38629 1.38629 1.38629
863 0.03480 4.06867 4.06867 1.46634 0.26236 1.09861 0.40547
864 24 3.54642 0.11747 3.59094 2.91079 24 - -
865 1.38629 1.38629 1.38629 1.38629
866 0.04625 4.06867 3.57210 1.46634 0.26236 1.09861 0.40547
867 25 0.13177 3.46027 2.85365 3.36962 25 - -
868 1.38629 1.38629 1.38629 1.38629
869 0.03519 4.05761 4.05761 1.46634 0.26236 0.79626 0.59968
870 26 3.18936 2.65909 3.23362 0.16325 26 - -
871 1.38629 1.38629 1.38629 1.38629
872 0.03480 4.06867 4.06867 1.46634 0.26236 1.09861 0.40547
873 27 2.50330 3.43570 0.16214 3.33373 27 - -
874 1.38629 1.38629 1.38629 1.38629
875 0.03480 4.06867 4.06867 1.46634 0.26236 1.09861 0.40547
876 28 3.54642 0.11747 3.59094 2.91079 28 - -
877 1.38629 1.38629 1.38629 1.38629
878 0.03480 4.06867 4.06867 1.46634 0.26236 1.09861 0.40547
879 29 3.18936 2.65909 3.23362 0.16325 29 - -
880 1.38629 1.38629 1.38629 1.38629
881 0.03480 4.06867 4.06867 1.46634 0.26236 1.09861 0.40547
882 30 3.18936 2.65909 3.23362 0.16325 30 - -
883 1.38629 1.38629 1.38629 1.38629
884 0.03480 4.06867 4.06867 1.46634 0.26236 1.09861 0.40547
885 31 3.01518 3.68691 0.10686 3.60210 31 - -
886 1.38629 1.38629 1.38629 1.38629
887 0.03480 4.06867 4.06867 1.46634 0.26236 1.09861 0.40547
888 32 3.18936 2.65909 3.23362 0.16325 32 - -
889 1.38629 1.38629 1.38629 1.38629
890 0.03480 4.06867 4.06867 1.46634 0.26236 1.09861 0.40547
891 33 3.35919 0.15748 3.41028 2.55223 33 - -
892 1.38629 1.38629 1.38629 1.38629
893 0.03480 4.06867 4.06867 1.46634 0.26236 1.09861 0.40547
894 34 3.18936 2.65909 3.23362 0.16325 34 - -
895 1.38629 1.38629 1.38629 1.38629
896 0.03480 4.06867 4.06867 1.46634 0.26236 1.09861 0.40547
897 35 3.01518 3.68691 0.10686 3.60210 35 - -
898 1.38629 1.38629 1.38629 1.38629
899 0.03480 4.06867 4.06867 1.46634 0.26236 1.09861 0.40547
900 36 0.12953 3.47895 2.86567 3.39012 36 - -
901 1.38629 1.38629 1.38629 1.38629
902 0.03480 4.06867 4.06867 1.46634 0.26236 1.09861 0.40547
903 37 3.01518 3.68691 0.10686 3.60210 37 - -
904 1.38629 1.38629 1.38629 1.38629
905 0.03480 4.06867 4.06867 1.46634 0.26236 1.09861 0.40547
906 38 3.18936 2.65909 3.23362 0.16325 38 - -
907 1.38629 1.38629 1.38629 1.38629
908 0.03480 4.06867 4.06867 1.46634 0.26236 1.09861 0.40547
909 39 3.01518 3.68691 0.10686 3.60210 39 - -
910 1.38629 1.38629 1.38629 1.38629
911 0.03480 4.06867 4.06867 1.46634 0.26236 1.09861 0.40547
912 40 3.18936 2.65909 3.23362 0.16325 40 - -
913 1.38629 1.38629 1.38629 1.38629
914 0.03480 4.06867 4.06867 1.46634 0.26236 1.09861 0.40547
915 41 3.54642 0.11747 3.59094 2.91079 41 - -
916 1.38629 1.38629 1.38629 1.38629
917 0.03480 4.06867 4.06867 1.46634 0.26236 1.09861 0.40547
918 42 3.18936 2.65909 3.23362 0.16325 42 - -
919 1.38629 1.38629 1.38629 1.38629
920 0.03480 4.06867 4.06867 1.46634 0.26236 1.09861 0.40547
921 43 3.01518 3.68691 0.10686 3.60210 43 - -
922 1.38629 1.38629 1.38629 1.38629
923 0.03480 4.06867 4.06867 1.46634 0.26236 1.09861 0.40547
924 44 3.05129 2.32303 3.10110 0.21106 44 - -
925 1.38629 1.38629 1.38629 1.38629
926 0.03480 4.06867 4.06867 1.46634 0.26236 1.09861 0.40547
927 45 3.01518 3.68691 0.10686 3.60210 45 - -
928 1.38629 1.38629 1.38629 1.38629
929 0.01755 4.05142 * 1.46634 0.26236 0.00000 *
930 //
931 HMMER3/b [3.0 | March 2010]
932 NAME 3_End_Bacillariophyta_58S_end_seven_long
933 LENG 45
934 ALPH DNA
935 RF no
936 CS no
937 MAP yes
938 DATE Fri Jan 20 11:42:22 2012
939 NSEQ 7
940 EFFN 3.380371
941 CKSUM 2693198585
942 STATS LOCAL MSV -7.4165 0.71932
943 STATS LOCAL VITERBI -7.6098 0.71932
944 STATS LOCAL FORWARD -4.0200 0.71932
945 HMM A C G T
946 m->m m->i m->d i->m i->i d->m d->d
947 COMPO 1.57825 1.37670 1.37176 1.24621
948 1.38629 1.38629 1.38629 1.38629
949 0.03650 4.02184 4.02184 1.46634 0.26236 0.00000 *
950 1 3.45418 0.12772 3.50274 2.84431 1 - -
951 1.38629 1.38629 1.38629 1.38629
952 0.03650 4.02184 4.02184 1.46634 0.26236 1.09861 0.40547
953 2 2.96025 3.60628 0.11515 3.51289 2 - -
954 1.38629 1.38629 1.38629 1.38629
955 0.03650 4.02184 4.02184 1.46634 0.26236 1.09861 0.40547
956 3 3.45418 0.12772 3.50274 2.84431 3 - -
957 1.38629 1.38629 1.38629 1.38629
958 0.03650 4.02184 4.02184 1.46634 0.26236 1.09861 0.40547
959 4 3.10711 2.60690 3.15456 0.17572 4 - -
960 1.38629 1.38629 1.38629 1.38629
961 0.03650 4.02184 4.02184 1.46634 0.26236 1.09861 0.40547
962 5 3.10711 2.60690 3.15456 0.17572 5 - -
963 1.38629 1.38629 1.38629 1.38629
964 0.03650 4.02184 4.02184 1.46634 0.26236 1.09861 0.40547
965 6 3.10711 2.60690 3.15456 0.17572 6 - -
966 1.38629 1.38629 1.38629 1.38629
967 0.03650 4.02184 4.02184 1.46634 0.26236 1.09861 0.40547
968 7 3.10711 2.60690 3.15456 0.17572 7 - -
969 1.38629 1.38629 1.38629 1.38629
970 0.03650 4.02184 4.02184 1.46634 0.26236 1.09861 0.40547
971 8 2.96025 3.60628 0.11515 3.51289 8 - -
972 1.38629 1.38629 1.38629 1.38629
973 0.03650 4.02184 4.02184 1.46634 0.26236 1.09861 0.40547
974 9 2.96025 3.60628 0.11515 3.51289 9 - -
975 1.38629 1.38629 1.38629 1.38629
976 0.03650 4.02184 4.02184 1.46634 0.26236 1.09861 0.40547
977 10 2.96025 3.60628 0.11515 3.51289 10 - -
978 1.38629 1.38629 1.38629 1.38629
979 0.03650 4.02184 4.02184 1.46634 0.26236 1.09861 0.40547
980 11 3.10711 2.60690 3.15456 0.17572 11 - -
981 1.38629 1.38629 1.38629 1.38629
982 0.03650 4.02184 4.02184 1.46634 0.26236 1.09861 0.40547
983 12 0.13950 3.39856 2.81379 3.30196 12 - -
984 1.38629 1.38629 1.38629 1.38629
985 0.03650 4.02184 4.02184 1.46634 0.26236 1.09861 0.40547
986 13 0.13950 3.39856 2.81379 3.30196 13 - -
987 1.38629 1.38629 1.38629 1.38629
988 0.03650 4.02184 4.02184 1.46634 0.26236 1.09861 0.40547
989 14 3.10711 2.60690 3.15456 0.17572 14 - -
990 1.38629 1.38629 1.38629 1.38629
991 0.03650 4.02184 4.02184 1.46634 0.26236 1.09861 0.40547
992 15 2.96025 3.60628 0.11515 3.51289 15 - -
993 1.38629 1.38629 1.38629 1.38629
994 0.03650 4.02184 4.02184 1.46634 0.26236 1.09861 0.40547
995 16 3.45418 0.12772 3.50274 2.84431 16 - -
996 1.38629 1.38629 1.38629 1.38629
997 0.03650 4.02184 4.02184 1.46634 0.26236 1.09861 0.40547
998 17 3.45418 0.12772 3.50274 2.84431 17 - -
999 1.38629 1.38629 1.38629 1.38629
1000 0.03650 4.02184 4.02184 1.46634 0.26236 1.09861 0.40547
1001 18 3.45418 0.12772 3.50274 2.84431 18 - -
1002 1.38629 1.38629 1.38629 1.38629
1003 0.03650 4.02184 4.02184 1.46634 0.26236 1.09861 0.40547
1004 19 0.13950 3.39856 2.81379 3.30196 19 - -
1005 1.38629 1.38629 1.38629 1.38629
1006 0.03650 4.02184 4.02184 1.46634 0.26236 1.09861 0.40547
1007 20 0.13950 3.39856 2.81379 3.30196 20 - -
1008 1.38629 1.38629 1.38629 1.38629
1009 0.03650 4.02184 4.02184 1.46634 0.26236 1.09861 0.40547
1010 21 2.96025 3.60628 0.11515 3.51289 21 - -
1011 1.38629 1.38629 1.38629 1.38629
1012 0.03650 4.02184 4.02184 1.46634 0.26236 1.09861 0.40547
1013 22 0.13950 3.39856 2.81379 3.30196 22 - -
1014 1.38629 1.38629 1.38629 1.38629
1015 0.03650 4.02184 4.02184 1.46634 0.26236 1.09861 0.40547
1016 23 2.96025 3.60628 0.11515 3.51289 23 - -
1017 1.38629 1.38629 1.38629 1.38629
1018 0.03650 4.02184 4.02184 1.46634 0.26236 1.09861 0.40547
1019 24 3.45418 0.12772 3.50274 2.84431 24 - -
1020 1.38629 1.38629 1.38629 1.38629
1021 0.03650 4.02184 4.02184 1.46634 0.26236 1.09861 0.40547
1022 25 0.13950 3.39856 2.81379 3.30196 25 - -
1023 1.38629 1.38629 1.38629 1.38629
1024 0.03650 4.02184 4.02184 1.46634 0.26236 1.09861 0.40547
1025 26 3.10711 2.60690 3.15456 0.17572 26 - -
1026 1.38629 1.38629 1.38629 1.38629
1027 0.03650 4.02184 4.02184 1.46634 0.26236 1.09861 0.40547
1028 27 2.96025 3.60628 0.11515 3.51289 27 - -
1029 1.38629 1.38629 1.38629 1.38629
1030 0.03650 4.02184 4.02184 1.46634 0.26236 1.09861 0.40547
1031 28 3.45418 0.12772 3.50274 2.84431 28 - -
1032 1.38629 1.38629 1.38629 1.38629
1033 0.03650 4.02184 4.02184 1.46634 0.26236 1.09861 0.40547
1034 29 3.10711 2.60690 3.15456 0.17572 29 - -
1035 1.38629 1.38629 1.38629 1.38629
1036 0.03650 4.02184 4.02184 1.46634 0.26236 1.09861 0.40547
1037 30 3.10711 2.60690 3.15456 0.17572 30 - -
1038 1.38629 1.38629 1.38629 1.38629
1039 0.03650 4.02184 4.02184 1.46634 0.26236 1.09861 0.40547
1040 31 0.13950 3.39856 2.81379 3.30196 31 - -
1041 1.38629 1.38629 1.38629 1.38629
1042 0.03650 4.02184 4.02184 1.46634 0.26236 1.09861 0.40547
1043 32 3.10711 2.60690 3.15456 0.17572 32 - -
1044 1.38629 1.38629 1.38629 1.38629
1045 0.03650 4.02184 4.02184 1.46634 0.26236 1.09861 0.40547
1046 33 3.45418 0.12772 3.50274 2.84431 33 - -
1047 1.38629 1.38629 1.38629 1.38629
1048 0.03650 4.02184 4.02184 1.46634 0.26236 1.09861 0.40547
1049 34 3.10711 2.60690 3.15456 0.17572 34 - -
1050 1.38629 1.38629 1.38629 1.38629
1051 0.03650 4.02184 4.02184 1.46634 0.26236 1.09861 0.40547
1052 35 2.96025 3.60628 0.11515 3.51289 35 - -
1053 1.38629 1.38629 1.38629 1.38629
1054 0.03650 4.02184 4.02184 1.46634 0.26236 1.09861 0.40547
1055 36 0.13950 3.39856 2.81379 3.30196 36 - -
1056 1.38629 1.38629 1.38629 1.38629
1057 0.03650 4.02184 4.02184 1.46634 0.26236 1.09861 0.40547
1058 37 2.96025 3.60628 0.11515 3.51289 37 - -
1059 1.38629 1.38629 1.38629 1.38629
1060 0.03650 4.02184 4.02184 1.46634 0.26236 1.09861 0.40547
1061 38 3.10711 2.60690 3.15456 0.17572 38 - -
1062 1.38629 1.38629 1.38629 1.38629
1063 0.03650 4.02184 4.02184 1.46634 0.26236 1.09861 0.40547
1064 39 2.96025 3.60628 0.11515 3.51289 39 - -
1065 1.38629 1.38629 1.38629 1.38629
1066 0.03650 4.02184 4.02184 1.46634 0.26236 1.09861 0.40547
1067 40 3.10711 2.60690 3.15456 0.17572 40 - -
1068 1.38629 1.38629 1.38629 1.38629
1069 0.03650 4.02184 4.02184 1.46634 0.26236 1.09861 0.40547
1070 41 3.45418 0.12772 3.50274 2.84431 41 - -
1071 1.38629 1.38629 1.38629 1.38629
1072 0.03650 4.02184 4.02184 1.46634 0.26236 1.09861 0.40547
1073 42 3.45418 0.12772 3.50274 2.84431 42 - -
1074 1.38629 1.38629 1.38629 1.38629
1075 0.03650 4.02184 4.02184 1.46634 0.26236 1.09861 0.40547
1076 43 3.45418 0.12772 3.50274 2.84431 43 - -
1077 1.38629 1.38629 1.38629 1.38629
1078 0.03650 4.02184 4.02184 1.46634 0.26236 1.09861 0.40547
1079 44 3.10711 2.60690 3.15456 0.17572 44 - -
1080 1.38629 1.38629 1.38629 1.38629
1081 0.03650 4.02184 4.02184 1.46634 0.26236 1.09861 0.40547
1082 45 0.44242 2.71377 1.53569 2.57794 45 - -
1083 1.38629 1.38629 1.38629 1.38629
1084 0.01842 4.00376 * 1.46634 0.26236 0.00000 *
1085 //
1086 HMMER3/b [3.0 | March 2010]
1087 NAME 3_End_Bacillariophyta_58S_end_six_long
1088 LENG 45
1089 ALPH DNA
1090 RF no
1091 CS no
1092 MAP yes
1093 DATE Fri Jan 20 11:42:15 2012
1094 NSEQ 23
1095 EFFN 4.910522
1096 CKSUM 989768431
1097 STATS LOCAL MSV -6.8527 0.71932
1098 STATS LOCAL VITERBI -7.7326 0.71932
1099 STATS LOCAL FORWARD -4.0652 0.71932
1100 HMM A C G T
1101 m->m m->i m->d i->m i->i d->m d->d
1102 COMPO 1.90902 1.42695 1.19558 1.17375
1103 1.38629 1.38629 1.38629 1.38629
1104 0.02853 4.26416 4.26416 1.46634 0.26236 0.00000 *
1105 1 3.88157 0.08732 3.91039 3.14745 1 - -
1106 1.38629 1.38629 1.38629 1.38629
1107 0.02853 4.26416 4.26416 1.46634 0.26236 1.09861 0.40547
1108 2 3.20993 3.97473 0.08224 3.92175 2 - -
1109 1.38629 1.38629 1.38629 1.38629
1110 0.02853 4.26416 4.26416 1.46634 0.26236 1.09861 0.40547
1111 3 3.88157 0.08732 3.91039 3.14745 3 - -
1112 1.38629 1.38629 1.38629 1.38629
1113 0.02853 4.26416 4.26416 1.46634 0.26236 1.09861 0.40547
1114 4 3.50993 2.86404 3.54157 0.12319 4 - -
1115 1.38629 1.38629 1.38629 1.38629
1116 0.02853 4.26416 4.26416 1.46634 0.26236 1.09861 0.40547
1117 5 3.19216 2.03607 3.24025 0.23671 5 - -
1118 1.38629 1.38629 1.38629 1.38629
1119 0.02853 4.26416 4.26416 1.46634 0.26236 1.09861 0.40547
1120 6 3.19429 0.20047 2.53561 2.78965 6 - -
1121 1.38629 1.38629 1.38629 1.38629
1122 0.02853 4.26416 4.26416 1.46634 0.26236 1.09861 0.40547
1123 7 3.88157 0.08732 3.91039 3.14745 7 - -
1124 1.38629 1.38629 1.38629 1.38629
1125 0.02853 4.26416 4.26416 1.46634 0.26236 1.09861 0.40547
1126 8 1.06582 2.19973 1.26269 1.34006 8 - -
1127 1.38629 1.38629 1.38629 1.38629
1128 0.02853 4.26416 4.26416 1.46634 0.26236 1.09861 0.40547
1129 9 3.20993 3.97473 0.08224 3.92175 9 - -
1130 1.38629 1.38629 1.38629 1.38629
1131 0.02853 4.26416 4.26416 1.46634 0.26236 1.09861 0.40547
1132 10 3.20993 3.97473 0.08224 3.92175 10 - -
1133 1.38629 1.38629 1.38629 1.38629
1134 0.02853 4.26416 4.26416 1.46634 0.26236 1.09861 0.40547
1135 11 0.09879 3.77800 3.05894 3.71889 11 - -
1136 1.38629 1.38629 1.38629 1.38629
1137 0.02853 4.26416 4.26416 1.46634 0.26236 1.09861 0.40547
1138 12 3.50993 2.86404 3.54157 0.12319 12 - -
1139 1.38629 1.38629 1.38629 1.38629
1140 0.02853 4.26416 4.26416 1.46634 0.26236 1.09861 0.40547
1141 13 3.50993 2.86404 3.54157 0.12319 13 - -
1142 1.38629 1.38629 1.38629 1.38629
1143 0.02853 4.26416 4.26416 1.46634 0.26236 1.09861 0.40547
1144 14 3.50993 2.86404 3.54157 0.12319 14 - -
1145 1.38629 1.38629 1.38629 1.38629
1146 0.02853 4.26416 4.26416 1.46634 0.26236 1.09861 0.40547
1147 15 3.50993 2.86404 3.54157 0.12319 15 - -
1148 1.38629 1.38629 1.38629 1.38629
1149 0.02853 4.26416 4.26416 1.46634 0.26236 1.09861 0.40547
1150 16 3.88157 0.08732 3.91039 3.14745 16 - -
1151 1.38629 1.38629 1.38629 1.38629
1152 0.02853 4.26416 4.26416 1.46634 0.26236 1.09861 0.40547
1153 17 3.88157 0.08732 3.91039 3.14745 17 - -
1154 1.38629 1.38629 1.38629 1.38629
1155 0.02853 4.26416 4.26416 1.46634 0.26236 1.09861 0.40547
1156 18 2.70043 0.67997 2.76952 1.01198 18 - -
1157 1.38629 1.38629 1.38629 1.38629
1158 0.02853 4.26416 4.26416 1.46634 0.26236 1.09861 0.40547
1159 19 3.20993 3.97473 0.08224 3.92175 19 - -
1160 1.38629 1.38629 1.38629 1.38629
1161 0.02853 4.26416 4.26416 1.46634 0.26236 1.09861 0.40547
1162 20 3.20993 3.97473 0.08224 3.92175 20 - -
1163 1.38629 1.38629 1.38629 1.38629
1164 0.02853 4.26416 4.26416 1.46634 0.26236 1.09861 0.40547
1165 21 2.59948 1.89052 0.34474 2.71373 21 - -
1166 1.38629 1.38629 1.38629 1.38629
1167 0.02853 4.26416 4.26416 1.46634 0.26236 1.09861 0.40547
1168 22 0.09879 3.77800 3.05894 3.71889 22 - -
1169 1.38629 1.38629 1.38629 1.38629
1170 0.02853 4.26416 4.26416 1.46634 0.26236 1.09861 0.40547
1171 23 3.20993 3.97473 0.08224 3.92175 23 - -
1172 1.38629 1.38629 1.38629 1.38629
1173 0.02853 4.26416 4.26416 1.46634 0.26236 1.09861 0.40547
1174 24 3.88157 0.08732 3.91039 3.14745 24 - -
1175 1.38629 1.38629 1.38629 1.38629
1176 0.02853 4.26416 4.26416 1.46634 0.26236 1.09861 0.40547
1177 25 0.09879 3.77800 3.05894 3.71889 25 - -
1178 1.38629 1.38629 1.38629 1.38629
1179 0.02853 4.26416 4.26416 1.46634 0.26236 1.09861 0.40547
1180 26 3.50993 2.86404 3.54157 0.12319 26 - -
1181 1.38629 1.38629 1.38629 1.38629
1182 0.02853 4.26416 4.26416 1.46634 0.26236 1.09861 0.40547
1183 27 3.20993 3.97473 0.08224 3.92175 27 - -
1184 1.38629 1.38629 1.38629 1.38629
1185 0.02853 4.26416 4.26416 1.46634 0.26236 1.09861 0.40547
1186 28 3.88157 0.08732 3.91039 3.14745 28 - -
1187 1.38629 1.38629 1.38629 1.38629
1188 0.02853 4.26416 4.26416 1.46634 0.26236 1.09861 0.40547
1189 29 2.24774 2.63840 2.99460 0.25770 29 - -
1190 1.38629 1.38629 1.38629 1.38629
1191 0.02853 4.26416 4.26416 1.46634 0.26236 1.09861 0.40547
1192 30 3.37000 2.44529 3.40918 0.16742 30 - -
1193 1.38629 1.38629 1.38629 1.38629
1194 0.02853 4.26416 4.26416 1.46634 0.26236 1.09861 0.40547
1195 31 3.20993 3.97473 0.08224 3.92175 31 - -
1196 1.38629 1.38629 1.38629 1.38629
1197 0.02853 4.26416 4.26416 1.46634 0.26236 1.09861 0.40547
1198 32 3.50993 2.86404 3.54157 0.12319 32 - -
1199 1.38629 1.38629 1.38629 1.38629
1200 0.02853 4.26416 4.26416 1.46634 0.26236 1.09861 0.40547
1201 33 2.70934 0.65669 2.77834 1.04210 33 - -
1202 1.38629 1.38629 1.38629 1.38629
1203 0.02853 4.26416 4.26416 1.46634 0.26236 1.09861 0.40547
1204 34 3.50993 2.86404 3.54157 0.12319 34 - -
1205 1.38629 1.38629 1.38629 1.38629
1206 0.02853 4.26416 4.26416 1.46634 0.26236 1.09861 0.40547
1207 35 3.20993 3.97473 0.08224 3.92175 35 - -
1208 1.38629 1.38629 1.38629 1.38629
1209 0.02853 4.26416 4.26416 1.46634 0.26236 1.09861 0.40547
1210 36 0.09879 3.77800 3.05894 3.71889 36 - -
1211 1.38629 1.38629 1.38629 1.38629
1212 0.02853 4.26416 4.26416 1.46634 0.26236 1.09861 0.40547
1213 37 3.20993 3.97473 0.08224 3.92175 37 - -
1214 1.38629 1.38629 1.38629 1.38629
1215 0.02853 4.26416 4.26416 1.46634 0.26236 1.09861 0.40547
1216 38 3.50993 2.86404 3.54157 0.12319 38 - -
1217 1.38629 1.38629 1.38629 1.38629
1218 0.02853 4.26416 4.26416 1.46634 0.26236 1.09861 0.40547
1219 39 3.20993 3.97473 0.08224 3.92175 39 - -
1220 1.38629 1.38629 1.38629 1.38629
1221 0.02853 4.26416 4.26416 1.46634 0.26236 1.09861 0.40547
1222 40 3.50993 2.86404 3.54157 0.12319 40 - -
1223 1.38629 1.38629 1.38629 1.38629
1224 0.02853 4.26416 4.26416 1.46634 0.26236 1.09861 0.40547
1225 41 2.94893 0.38481 3.01361 1.52366 41 - -
1226 1.38629 1.38629 1.38629 1.38629
1227 0.02853 4.26416 4.26416 1.46634 0.26236 1.09861 0.40547
1228 42 0.39990 2.71590 2.54745 1.68638 42 - -
1229 1.38629 1.38629 1.38629 1.38629
1230 0.02853 4.26416 4.26416 1.46634 0.26236 1.09861 0.40547
1231 43 3.20993 3.97473 0.08224 3.92175 43 - -
1232 1.38629 1.38629 1.38629 1.38629
1233 0.02853 4.26416 4.26416 1.46634 0.26236 1.09861 0.40547
1234 44 2.83838 1.37814 2.90080 0.45499 44 - -
1235 1.38629 1.38629 1.38629 1.38629
1236 0.02853 4.26416 4.26416 1.46634 0.26236 1.09861 0.40547
1237 45 1.25375 2.88872 0.51876 2.75413 45 - -
1238 1.38629 1.38629 1.38629 1.38629
1239 0.01437 4.25000 * 1.46634 0.26236 0.00000 *
1240 //
1241 HMMER3/b [3.0 | March 2010]
1242 NAME 3_End_Bacillariophyta_58S_end_ten_long
1243 LENG 45
1244 ALPH DNA
1245 RF no
1246 CS no
1247 MAP yes
1248 DATE Fri Jan 20 11:42:48 2012
1249 NSEQ 12
1250 EFFN 3.571289
1251 CKSUM 3994526417
1252 STATS LOCAL MSV -7.4590 0.71932
1253 STATS LOCAL VITERBI -7.8349 0.71932
1254 STATS LOCAL FORWARD -3.7654 0.71932
1255 HMM A C G T
1256 m->m m->i m->d i->m i->i d->m d->d
1257 COMPO 1.69655 1.33242 1.35217 1.22360
1258 1.38629 1.38629 1.38629 1.38629
1259 0.03527 4.05548 4.05548 1.46634 0.26236 0.00000 *
1260 1 3.52090 0.12021 3.56655 2.89248 1 - -
1261 1.38629 1.38629 1.38629 1.38629
1262 0.03527 4.05548 4.05548 1.46634 0.26236 1.09861 0.40547
1263 2 3.00009 3.66468 0.10908 3.57747 2 - -
1264 1.38629 1.38629 1.38629 1.38629
1265 0.03527 4.05548 4.05548 1.46634 0.26236 1.09861 0.40547
1266 3 3.52090 0.12021 3.56655 2.89248 3 - -
1267 1.38629 1.38629 1.38629 1.38629
1268 0.03527 4.05548 4.05548 1.46634 0.26236 1.09861 0.40547
1269 4 3.16639 2.64453 3.21155 0.16663 4 - -
1270 1.38629 1.38629 1.38629 1.38629
1271 0.03527 4.05548 4.05548 1.46634 0.26236 1.09861 0.40547
1272 5 3.16639 2.64453 3.21155 0.16663 5 - -
1273 1.38629 1.38629 1.38629 1.38629
1274 0.03527 4.05548 4.05548 1.46634 0.26236 1.09861 0.40547
1275 6 3.52090 0.12021 3.56655 2.89248 6 - -
1276 1.38629 1.38629 1.38629 1.38629
1277 0.03527 4.05548 4.05548 1.46634 0.26236 1.09861 0.40547
1278 7 3.16639 2.64453 3.21155 0.16663 7 - -
1279 1.38629 1.38629 1.38629 1.38629
1280 0.03527 4.05548 4.05548 1.46634 0.26236 1.09861 0.40547
1281 8 3.00009 3.66468 0.10908 3.57747 8 - -
1282 1.38629 1.38629 1.38629 1.38629
1283 0.03527 4.05548 4.05548 1.46634 0.26236 1.09861 0.40547
1284 9 3.00009 3.66468 0.10908 3.57747 9 - -
1285 1.38629 1.38629 1.38629 1.38629
1286 0.03527 4.05548 4.05548 1.46634 0.26236 1.09861 0.40547
1287 10 3.00009 3.66468 0.10908 3.57747 10 - -
1288 1.38629 1.38629 1.38629 1.38629
1289 0.03527 4.05548 4.05548 1.46634 0.26236 1.09861 0.40547
1290 11 3.16639 2.64453 3.21155 0.16663 11 - -
1291 1.38629 1.38629 1.38629 1.38629
1292 0.03527 4.05548 4.05548 1.46634 0.26236 1.09861 0.40547
1293 12 3.16639 2.64453 3.21155 0.16663 12 - -
1294 1.38629 1.38629 1.38629 1.38629
1295 0.03527 4.05548 4.05548 1.46634 0.26236 1.09861 0.40547
1296 13 0.13221 3.45665 2.85132 3.36565 13 - -
1297 1.38629 1.38629 1.38629 1.38629
1298 0.03527 4.05548 4.05548 1.46634 0.26236 1.09861 0.40547
1299 14 3.16639 2.64453 3.21155 0.16663 14 - -
1300 1.38629 1.38629 1.38629 1.38629
1301 0.03527 4.05548 4.05548 1.46634 0.26236 1.09861 0.40547
1302 15 3.16639 2.64453 3.21155 0.16663 15 - -
1303 1.38629 1.38629 1.38629 1.38629
1304 0.03527 4.05548 4.05548 1.46634 0.26236 1.09861 0.40547
1305 16 3.52090 0.12021 3.56655 2.89248 16 - -
1306 1.38629 1.38629 1.38629 1.38629
1307 0.03527 4.05548 4.05548 1.46634 0.26236 1.09861 0.40547
1308 17 3.52090 0.12021 3.56655 2.89248 17 - -
1309 1.38629 1.38629 1.38629 1.38629
1310 0.03527 4.05548 4.05548 1.46634 0.26236 1.09861 0.40547
1311 18 3.52090 0.12021 3.56655 2.89248 18 - -
1312 1.38629 1.38629 1.38629 1.38629
1313 0.03527 4.05548 4.05548 1.46634 0.26236 1.09861 0.40547
1314 19 0.13221 3.45665 2.85132 3.36565 19 - -
1315 1.38629 1.38629 1.38629 1.38629
1316 0.03527 4.05548 4.05548 1.46634 0.26236 1.09861 0.40547
1317 20 3.00009 3.66468 0.10908 3.57747 20 - -
1318 1.38629 1.38629 1.38629 1.38629
1319 0.03527 4.05548 4.05548 1.46634 0.26236 1.09861 0.40547
1320 21 3.00009 3.66468 0.10908 3.57747 21 - -
1321 1.38629 1.38629 1.38629 1.38629
1322 0.03527 4.05548 4.05548 1.46634 0.26236 1.09861 0.40547
1323 22 0.13221 3.45665 2.85132 3.36565 22 - -
1324 1.38629 1.38629 1.38629 1.38629
1325 0.03527 4.05548 4.05548 1.46634 0.26236 1.09861 0.40547
1326 23 3.00009 3.66468 0.10908 3.57747 23 - -
1327 1.38629 1.38629 1.38629 1.38629
1328 0.03527 4.05548 4.05548 1.46634 0.26236 1.09861 0.40547
1329 24 3.52090 0.12021 3.56655 2.89248 24 - -
1330 1.38629 1.38629 1.38629 1.38629
1331 0.03527 4.05548 4.05548 1.46634 0.26236 1.09861 0.40547
1332 25 0.13221 3.45665 2.85132 3.36565 25 - -
1333 1.38629 1.38629 1.38629 1.38629
1334 0.03527 4.05548 4.05548 1.46634 0.26236 1.09861 0.40547
1335 26 3.16639 2.64453 3.21155 0.16663 26 - -
1336 1.38629 1.38629 1.38629 1.38629
1337 0.03527 4.05548 4.05548 1.46634 0.26236 1.09861 0.40547
1338 27 0.13221 3.45665 2.85132 3.36565 27 - -
1339 1.38629 1.38629 1.38629 1.38629
1340 0.03527 4.05548 4.05548 1.46634 0.26236 1.09861 0.40547
1341 28 3.52090 0.12021 3.56655 2.89248 28 - -
1342 1.38629 1.38629 1.38629 1.38629
1343 0.03527 4.05548 4.05548 1.46634 0.26236 1.09861 0.40547
1344 29 3.16639 2.64453 3.21155 0.16663 29 - -
1345 1.38629 1.38629 1.38629 1.38629
1346 0.03527 4.05548 4.05548 1.46634 0.26236 1.09861 0.40547
1347 30 3.16639 2.64453 3.21155 0.16663 30 - -
1348 1.38629 1.38629 1.38629 1.38629
1349 0.03527 4.05548 4.05548 1.46634 0.26236 1.09861 0.40547
1350 31 0.13221 3.45665 2.85132 3.36565 31 - -
1351 1.38629 1.38629 1.38629 1.38629
1352 0.03527 4.05548 4.05548 1.46634 0.26236 1.09861 0.40547
1353 32 3.16639 2.64453 3.21155 0.16663 32 - -
1354 1.38629 1.38629 1.38629 1.38629
1355 0.03527 4.05548 4.05548 1.46634 0.26236 1.09861 0.40547
1356 33 3.52090 0.12021 3.56655 2.89248 33 - -
1357 1.38629 1.38629 1.38629 1.38629
1358 0.03527 4.05548 4.05548 1.46634 0.26236 1.09861 0.40547
1359 34 3.16639 2.64453 3.21155 0.16663 34 - -
1360 1.38629 1.38629 1.38629 1.38629
1361 0.03527 4.05548 4.05548 1.46634 0.26236 1.09861 0.40547
1362 35 3.00009 3.66468 0.10908 3.57747 35 - -
1363 1.38629 1.38629 1.38629 1.38629
1364 0.03527 4.05548 4.05548 1.46634 0.26236 1.09861 0.40547
1365 36 0.20546 3.20130 2.30575 3.09377 36 - -
1366 1.38629 1.38629 1.38629 1.38629
1367 0.03527 4.05548 4.05548 1.46634 0.26236 1.09861 0.40547
1368 37 3.00009 3.66468 0.10908 3.57747 37 - -
1369 1.38629 1.38629 1.38629 1.38629
1370 0.03527 4.05548 4.05548 1.46634 0.26236 1.09861 0.40547
1371 38 3.16639 2.64453 3.21155 0.16663 38 - -
1372 1.38629 1.38629 1.38629 1.38629
1373 0.03527 4.05548 4.05548 1.46634 0.26236 1.09861 0.40547
1374 39 3.00009 3.66468 0.10908 3.57747 39 - -
1375 1.38629 1.38629 1.38629 1.38629
1376 0.03527 4.05548 4.05548 1.46634 0.26236 1.09861 0.40547
1377 40 3.16639 2.64453 3.21155 0.16663 40 - -
1378 1.38629 1.38629 1.38629 1.38629
1379 0.03527 4.05548 4.05548 1.46634 0.26236 1.09861 0.40547
1380 41 3.52090 0.12021 3.56655 2.89248 41 - -
1381 1.38629 1.38629 1.38629 1.38629
1382 0.03527 4.05548 4.05548 1.46634 0.26236 1.09861 0.40547
1383 42 3.52090 0.12021 3.56655 2.89248 42 - -
1384 1.38629 1.38629 1.38629 1.38629
1385 0.03527 4.05548 4.05548 1.46634 0.26236 1.09861 0.40547
1386 43 2.54971 0.57954 2.62092 1.24131 43 - -
1387 1.38629 1.38629 1.38629 1.38629
1388 0.03527 4.05548 4.05548 1.46634 0.26236 1.09861 0.40547
1389 44 3.00009 3.66468 0.10908 3.57747 44 - -
1390 1.38629 1.38629 1.38629 1.38629
1391 0.03527 4.05548 4.05548 1.46634 0.26236 1.09861 0.40547
1392 45 0.86869 2.55645 0.88355 2.41231 45 - -
1393 1.38629 1.38629 1.38629 1.38629
1394 0.01779 4.03800 * 1.46634 0.26236 0.00000 *
1395 //
1396 HMMER3/b [3.0 | March 2010]
1397 NAME 3_End_Bacillariophyta_58S_end_three_long
1398 LENG 45
1399 ALPH DNA
1400 RF no
1401 CS no
1402 MAP yes
1403 DATE Fri Jan 20 11:41:46 2012
1404 NSEQ 5
1405 EFFN 3.647461
1406 CKSUM 282462996
1407 STATS LOCAL MSV -7.4641 0.71933
1408 STATS LOCAL VITERBI -7.7880 0.71933
1409 STATS LOCAL FORWARD -4.3354 0.71933
1410 HMM A C G T
1411 m->m m->i m->d i->m i->i d->m d->d
1412 COMPO 1.78844 1.55757 1.15735 1.17826
1413 1.38629 1.38629 1.38629 1.38629
1414 0.03480 4.06859 4.06859 1.46634 0.26236 0.00000 *
1415 1 3.54628 0.11749 3.59080 2.91069 1 - -
1416 1.38629 1.38629 1.38629 1.38629
1417 0.03480 4.06859 4.06859 1.46634 0.26236 1.09861 0.40547
1418 2 3.01510 3.68679 0.10688 3.60196 2 - -
1419 1.38629 1.38629 1.38629 1.38629
1420 0.03480 4.06859 4.06859 1.46634 0.26236 1.09861 0.40547
1421 3 3.54628 0.11749 3.59080 2.91069 3 - -
1422 1.38629 1.38629 1.38629 1.38629
1423 0.03480 4.06859 4.06859 1.46634 0.26236 1.09861 0.40547
1424 4 3.18923 2.65900 3.23350 0.16327 4 - -
1425 1.38629 1.38629 1.38629 1.38629
1426 0.03480 4.06859 4.06859 1.46634 0.26236 1.09861 0.40547
1427 5 3.01510 3.68679 0.10688 3.60196 5 - -
1428 1.38629 1.38629 1.38629 1.38629
1429 0.03480 4.06859 4.06859 1.46634 0.26236 1.09861 0.40547
1430 6 3.18923 2.65900 3.23350 0.16327 6 - -
1431 1.38629 1.38629 1.38629 1.38629
1432 0.03480 4.06859 4.06859 1.46634 0.26236 1.09861 0.40547
1433 7 3.18923 2.65900 3.23350 0.16327 7 - -
1434 1.38629 1.38629 1.38629 1.38629
1435 0.03480 4.06859 4.06859 1.46634 0.26236 1.09861 0.40547
1436 8 3.18923 2.65900 3.23350 0.16327 8 - -
1437 1.38629 1.38629 1.38629 1.38629
1438 0.03480 4.06859 4.06859 1.46634 0.26236 1.09861 0.40547
1439 9 3.01510 3.68679 0.10688 3.60196 9 - -
1440 1.38629 1.38629 1.38629 1.38629
1441 0.03480 4.06859 4.06859 1.46634 0.26236 1.09861 0.40547
1442 10 3.01510 3.68679 0.10688 3.60196 10 - -
1443 1.38629 1.38629 1.38629 1.38629
1444 0.03480 4.06859 4.06859 1.46634 0.26236 1.09861 0.40547
1445 11 3.01510 3.68679 0.10688 3.60196 11 - -
1446 1.38629 1.38629 1.38629 1.38629
1447 0.03480 4.06859 4.06859 1.46634 0.26236 1.09861 0.40547
1448 12 0.12954 3.47883 2.86559 3.38998 12 - -
1449 1.38629 1.38629 1.38629 1.38629
1450 0.03480 4.06859 4.06859 1.46634 0.26236 1.09861 0.40547
1451 13 0.12954 3.47883 2.86559 3.38998 13 - -
1452 1.38629 1.38629 1.38629 1.38629
1453 0.03480 4.06859 4.06859 1.46634 0.26236 1.09861 0.40547
1454 14 3.18923 2.65900 3.23350 0.16327 14 - -
1455 1.38629 1.38629 1.38629 1.38629
1456 0.03480 4.06859 4.06859 1.46634 0.26236 1.09861 0.40547
1457 15 3.18923 2.65900 3.23350 0.16327 15 - -
1458 1.38629 1.38629 1.38629 1.38629
1459 0.03480 4.06859 4.06859 1.46634 0.26236 1.09861 0.40547
1460 16 3.54628 0.11749 3.59080 2.91069 16 - -
1461 1.38629 1.38629 1.38629 1.38629
1462 0.03480 4.06859 4.06859 1.46634 0.26236 1.09861 0.40547
1463 17 3.54628 0.11749 3.59080 2.91069 17 - -
1464 1.38629 1.38629 1.38629 1.38629
1465 0.03480 4.06859 4.06859 1.46634 0.26236 1.09861 0.40547
1466 18 3.18923 2.65900 3.23350 0.16327 18 - -
1467 1.38629 1.38629 1.38629 1.38629
1468 0.03480 4.06859 4.06859 1.46634 0.26236 1.09861 0.40547
1469 19 3.01510 3.68679 0.10688 3.60196 19 - -
1470 1.38629 1.38629 1.38629 1.38629
1471 0.03480 4.06859 4.06859 1.46634 0.26236 1.09861 0.40547
1472 20 3.01510 3.68679 0.10688 3.60196 20 - -
1473 1.38629 1.38629 1.38629 1.38629
1474 0.03480 4.06859 4.06859 1.46634 0.26236 1.09861 0.40547
1475 21 3.54628 0.11749 3.59080 2.91069 21 - -
1476 1.38629 1.38629 1.38629 1.38629
1477 0.03480 4.06859 4.06859 1.46634 0.26236 1.09861 0.40547
1478 22 0.12954 3.47883 2.86559 3.38998 22 - -
1479 1.38629 1.38629 1.38629 1.38629
1480 0.03480 4.06859 4.06859 1.46634 0.26236 1.09861 0.40547
1481 23 3.01510 3.68679 0.10688 3.60196 23 - -
1482 1.38629 1.38629 1.38629 1.38629
1483 0.03480 4.06859 4.06859 1.46634 0.26236 1.09861 0.40547
1484 24 3.54628 0.11749 3.59080 2.91069 24 - -
1485 1.38629 1.38629 1.38629 1.38629
1486 0.03480 4.06859 4.06859 1.46634 0.26236 1.09861 0.40547
1487 25 0.12954 3.47883 2.86559 3.38998 25 - -
1488 1.38629 1.38629 1.38629 1.38629
1489 0.03480 4.06859 4.06859 1.46634 0.26236 1.09861 0.40547
1490 26 3.18923 2.65900 3.23350 0.16327 26 - -
1491 1.38629 1.38629 1.38629 1.38629
1492 0.03480 4.06859 4.06859 1.46634 0.26236 1.09861 0.40547
1493 27 3.01510 3.68679 0.10688 3.60196 27 - -
1494 1.38629 1.38629 1.38629 1.38629
1495 0.03480 4.06859 4.06859 1.46634 0.26236 1.09861 0.40547
1496 28 3.18923 2.65900 3.23350 0.16327 28 - -
1497 1.38629 1.38629 1.38629 1.38629
1498 0.03480 4.06859 4.06859 1.46634 0.26236 1.09861 0.40547
1499 29 3.18923 2.65900 3.23350 0.16327 29 - -
1500 1.38629 1.38629 1.38629 1.38629
1501 0.03480 4.06859 4.06859 1.46634 0.26236 1.09861 0.40547
1502 30 3.18923 2.65900 3.23350 0.16327 30 - -
1503 1.38629 1.38629 1.38629 1.38629
1504 0.03480 4.06859 4.06859 1.46634 0.26236 1.09861 0.40547
1505 31 3.01510 3.68679 0.10688 3.60196 31 - -
1506 1.38629 1.38629 1.38629 1.38629
1507 0.03480 4.06859 4.06859 1.46634 0.26236 1.09861 0.40547
1508 32 3.18923 2.65900 3.23350 0.16327 32 - -
1509 1.38629 1.38629 1.38629 1.38629
1510 0.03480 4.06859 4.06859 1.46634 0.26236 1.09861 0.40547
1511 33 3.54628 0.11749 3.59080 2.91069 33 - -
1512 1.38629 1.38629 1.38629 1.38629
1513 0.03480 4.06859 4.06859 1.46634 0.26236 1.09861 0.40547
1514 34 3.18923 2.65900 3.23350 0.16327 34 - -
1515 1.38629 1.38629 1.38629 1.38629
1516 0.03480 4.06859 4.06859 1.46634 0.26236 1.09861 0.40547
1517 35 3.01510 3.68679 0.10688 3.60196 35 - -
1518 1.38629 1.38629 1.38629 1.38629
1519 0.03480 4.06859 4.06859 1.46634 0.26236 1.09861 0.40547
1520 36 0.12954 3.47883 2.86559 3.38998 36 - -
1521 1.38629 1.38629 1.38629 1.38629
1522 0.03480 4.06859 4.06859 1.46634 0.26236 1.09861 0.40547
1523 37 3.01510 3.68679 0.10688 3.60196 37 - -
1524 1.38629 1.38629 1.38629 1.38629
1525 0.03480 4.06859 4.06859 1.46634 0.26236 1.09861 0.40547
1526 38 2.50462 1.17407 2.57418 0.62929 38 - -
1527 1.38629 1.38629 1.38629 1.38629
1528 0.03480 4.06859 4.06859 1.46634 0.26236 1.09861 0.40547
1529 39 3.01510 3.68679 0.10688 3.60196 39 - -
1530 1.38629 1.38629 1.38629 1.38629
1531 0.03480 4.06859 4.06859 1.46634 0.26236 1.09861 0.40547
1532 40 3.18923 2.65900 3.23350 0.16327 40 - -
1533 1.38629 1.38629 1.38629 1.38629
1534 0.03480 4.06859 4.06859 1.46634 0.26236 1.09861 0.40547
1535 41 2.50462 1.17407 2.57418 0.62929 41 - -
1536 1.38629 1.38629 1.38629 1.38629
1537 0.03480 4.06859 4.06859 1.46634 0.26236 1.09861 0.40547
1538 42 0.12954 3.47883 2.86559 3.38998 42 - -
1539 1.38629 1.38629 1.38629 1.38629
1540 0.03480 4.06859 4.06859 1.46634 0.26236 1.09861 0.40547
1541 43 3.01510 3.68679 0.10688 3.60196 43 - -
1542 1.38629 1.38629 1.38629 1.38629
1543 0.03480 4.06859 4.06859 1.46634 0.26236 1.09861 0.40547
1544 44 3.54628 0.11749 3.59080 2.91069 44 - -
1545 1.38629 1.38629 1.38629 1.38629
1546 0.03480 4.06859 4.06859 1.46634 0.26236 1.09861 0.40547
1547 45 1.12332 2.61913 0.65802 2.47627 45 - -
1548 1.38629 1.38629 1.38629 1.38629
1549 0.01755 4.05134 * 1.46634 0.26236 0.00000 *
1550 //
1551 HMMER3/b [3.0 | March 2010]
1552 NAME 3_End_Bacillariophyta_58S_end_twelve_long
1553 LENG 45
1554 ALPH DNA
1555 RF no
1556 CS no
1557 MAP yes
1558 DATE Fri Jan 20 11:43:07 2012
1559 NSEQ 4
1560 EFFN 3.191406
1561 CKSUM 292128274
1562 STATS LOCAL MSV -8.0824 0.71931
1563 STATS LOCAL VITERBI -7.8114 0.71931
1564 STATS LOCAL FORWARD -4.1333 0.71931
1565 HMM A C G T
1566 m->m m->i m->d i->m i->i d->m d->d
1567 COMPO 1.81883 1.38860 1.09146 1.37581
1568 1.38629 1.38629 1.38629 1.38629
1569 0.03780 3.98739 3.98739 1.46634 0.26236 0.00000 *
1570 1 3.38354 0.13628 3.43507 2.79277 1 - -
1571 1.38629 1.38629 1.38629 1.38629
1572 0.03780 3.98739 3.98739 1.46634 0.26236 1.09861 0.40547
1573 2 2.91732 3.54398 0.12206 3.44415 2 - -
1574 1.38629 1.38629 1.38629 1.38629
1575 0.03780 3.98739 3.98739 1.46634 0.26236 1.09861 0.40547
1576 3 3.38354 0.13628 3.43507 2.79277 3 - -
1577 1.38629 1.38629 1.38629 1.38629
1578 0.03780 3.98739 3.98739 1.46634 0.26236 1.09861 0.40547
1579 4 3.04545 2.56765 3.09524 0.18579 4 - -
1580 1.38629 1.38629 1.38629 1.38629
1581 0.03780 3.98739 3.98739 1.46634 0.26236 1.09861 0.40547
1582 5 3.04545 2.56765 3.09524 0.18579 5 - -
1583 1.38629 1.38629 1.38629 1.38629
1584 0.03780 3.98739 3.98739 1.46634 0.26236 1.09861 0.40547
1585 6 3.38354 0.13628 3.43507 2.79277 6 - -
1586 1.38629 1.38629 1.38629 1.38629
1587 0.03780 3.98739 3.98739 1.46634 0.26236 1.09861 0.40547
1588 7 3.38354 0.13628 3.43507 2.79277 7 - -
1589 1.38629 1.38629 1.38629 1.38629
1590 0.03780 3.98739 3.98739 1.46634 0.26236 1.09861 0.40547
1591 8 2.91732 3.54398 0.12206 3.44415 8 - -
1592 1.38629 1.38629 1.38629 1.38629
1593 0.03780 3.98739 3.98739 1.46634 0.26236 1.09861 0.40547
1594 9 2.91732 3.54398 0.12206 3.44415 9 - -
1595 1.38629 1.38629 1.38629 1.38629
1596 0.03780 3.98739 3.98739 1.46634 0.26236 1.09861 0.40547
1597 10 2.91732 3.54398 0.12206 3.44415 10 - -
1598 1.38629 1.38629 1.38629 1.38629
1599 0.03780 3.98739 3.98739 1.46634 0.26236 1.09861 0.40547
1600 11 0.14770 3.33730 2.77393 3.23493 11 - -
1601 1.38629 1.38629 1.38629 1.38629
1602 0.03780 3.98739 3.98739 1.46634 0.26236 1.09861 0.40547
1603 12 0.14770 3.33730 2.77393 3.23493 12 - -
1604 1.38629 1.38629 1.38629 1.38629
1605 0.03780 3.98739 3.98739 1.46634 0.26236 1.09861 0.40547
1606 13 0.14770 3.33730 2.77393 3.23493 13 - -
1607 1.38629 1.38629 1.38629 1.38629
1608 0.03780 3.98739 3.98739 1.46634 0.26236 1.09861 0.40547
1609 14 3.04545 2.56765 3.09524 0.18579 14 - -
1610 1.38629 1.38629 1.38629 1.38629
1611 0.03780 3.98739 3.98739 1.46634 0.26236 1.09861 0.40547
1612 15 2.91732 3.54398 0.12206 3.44415 15 - -
1613 1.38629 1.38629 1.38629 1.38629
1614 0.03780 3.98739 3.98739 1.46634 0.26236 1.09861 0.40547
1615 16 3.38354 0.13628 3.43507 2.79277 16 - -
1616 1.38629 1.38629 1.38629 1.38629
1617 0.03780 3.98739 3.98739 1.46634 0.26236 1.09861 0.40547
1618 17 3.38354 0.13628 3.43507 2.79277 17 - -
1619 1.38629 1.38629 1.38629 1.38629
1620 0.03780 3.98739 3.98739 1.46634 0.26236 1.09861 0.40547
1621 18 3.38354 0.13628 3.43507 2.79277 18 - -
1622 1.38629 1.38629 1.38629 1.38629
1623 0.03780 3.98739 3.98739 1.46634 0.26236 1.09861 0.40547
1624 19 2.91732 3.54398 0.12206 3.44415 19 - -
1625 1.38629 1.38629 1.38629 1.38629
1626 0.03780 3.98739 3.98739 1.46634 0.26236 1.09861 0.40547
1627 20 2.91732 3.54398 0.12206 3.44415 20 - -
1628 1.38629 1.38629 1.38629 1.38629
1629 0.03780 3.98739 3.98739 1.46634 0.26236 1.09861 0.40547
1630 21 3.04545 2.56765 3.09524 0.18579 21 - -
1631 1.38629 1.38629 1.38629 1.38629
1632 0.03780 3.98739 3.98739 1.46634 0.26236 1.09861 0.40547
1633 22 0.14770 3.33730 2.77393 3.23493 22 - -
1634 1.38629 1.38629 1.38629 1.38629
1635 0.03780 3.98739 3.98739 1.46634 0.26236 1.09861 0.40547
1636 23 2.91732 3.54398 0.12206 3.44415 23 - -
1637 1.38629 1.38629 1.38629 1.38629
1638 0.03780 3.98739 3.98739 1.46634 0.26236 1.09861 0.40547
1639 24 3.38354 0.13628 3.43507 2.79277 24 - -
1640 1.38629 1.38629 1.38629 1.38629
1641 0.03780 3.98739 3.98739 1.46634 0.26236 1.09861 0.40547
1642 25 0.14770 3.33730 2.77393 3.23493 25 - -
1643 1.38629 1.38629 1.38629 1.38629
1644 0.03780 3.98739 3.98739 1.46634 0.26236 1.09861 0.40547
1645 26 3.04545 2.56765 3.09524 0.18579 26 - -
1646 1.38629 1.38629 1.38629 1.38629
1647 0.03780 3.98739 3.98739 1.46634 0.26236 1.09861 0.40547
1648 27 2.91732 3.54398 0.12206 3.44415 27 - -
1649 1.38629 1.38629 1.38629 1.38629
1650 0.03780 3.98739 3.98739 1.46634 0.26236 1.09861 0.40547
1651 28 3.38354 0.13628 3.43507 2.79277 28 - -
1652 1.38629 1.38629 1.38629 1.38629
1653 0.03780 3.98739 3.98739 1.46634 0.26236 1.09861 0.40547
1654 29 3.38354 0.13628 3.43507 2.79277 29 - -
1655 1.38629 1.38629 1.38629 1.38629
1656 0.03780 3.98739 3.98739 1.46634 0.26236 1.09861 0.40547
1657 30 3.04545 2.56765 3.09524 0.18579 30 - -
1658 1.38629 1.38629 1.38629 1.38629
1659 0.03780 3.98739 3.98739 1.46634 0.26236 1.09861 0.40547
1660 31 2.91732 3.54398 0.12206 3.44415 31 - -
1661 1.38629 1.38629 1.38629 1.38629
1662 0.03780 3.98739 3.98739 1.46634 0.26236 1.09861 0.40547
1663 32 2.91732 3.54398 0.12206 3.44415 32 - -
1664 1.38629 1.38629 1.38629 1.38629
1665 0.03780 3.98739 3.98739 1.46634 0.26236 1.09861 0.40547
1666 33 3.04545 2.56765 3.09524 0.18579 33 - -
1667 1.38629 1.38629 1.38629 1.38629
1668 0.03780 3.98739 3.98739 1.46634 0.26236 1.09861 0.40547
1669 34 3.04545 2.56765 3.09524 0.18579 34 - -
1670 1.38629 1.38629 1.38629 1.38629
1671 0.03780 3.98739 3.98739 1.46634 0.26236 1.09861 0.40547
1672 35 2.91732 3.54398 0.12206 3.44415 35 - -
1673 1.38629 1.38629 1.38629 1.38629
1674 0.03780 3.98739 3.98739 1.46634 0.26236 1.09861 0.40547
1675 36 0.14770 3.33730 2.77393 3.23493 36 - -
1676 1.38629 1.38629 1.38629 1.38629
1677 0.03780 3.98739 3.98739 1.46634 0.26236 1.09861 0.40547
1678 37 2.91732 3.54398 0.12206 3.44415 37 - -
1679 1.38629 1.38629 1.38629 1.38629
1680 0.03780 3.98739 3.98739 1.46634 0.26236 1.09861 0.40547
1681 38 3.04545 2.56765 3.09524 0.18579 38 - -
1682 1.38629 1.38629 1.38629 1.38629
1683 0.03780 3.98739 3.98739 1.46634 0.26236 1.09861 0.40547
1684 39 2.91732 3.54398 0.12206 3.44415 39 - -
1685 1.38629 1.38629 1.38629 1.38629
1686 0.03780 3.98739 3.98739 1.46634 0.26236 1.09861 0.40547
1687 40 3.04545 2.56765 3.09524 0.18579 40 - -
1688 1.38629 1.38629 1.38629 1.38629
1689 0.03780 3.98739 3.98739 1.46634 0.26236 1.09861 0.40547
1690 41 3.04545 2.56765 3.09524 0.18579 41 - -
1691 1.38629 1.38629 1.38629 1.38629
1692 0.03780 3.98739 3.98739 1.46634 0.26236 1.09861 0.40547
1693 42 3.38354 0.13628 3.43507 2.79277 42 - -
1694 1.38629 1.38629 1.38629 1.38629
1695 0.03780 3.98739 3.98739 1.46634 0.26236 1.09861 0.40547
1696 43 2.91732 3.54398 0.12206 3.44415 43 - -
1697 1.38629 1.38629 1.38629 1.38629
1698 0.03780 3.98739 3.98739 1.46634 0.26236 1.09861 0.40547
1699 44 3.04545 2.56765 3.09524 0.18579 44 - -
1700 1.38629 1.38629 1.38629 1.38629
1701 0.03780 3.98739 3.98739 1.46634 0.26236 1.09861 0.40547
1702 45 2.91732 3.54398 0.12206 3.44415 45 - -
1703 1.38629 1.38629 1.38629 1.38629
1704 0.01908 3.96867 * 1.46634 0.26236 0.00000 *
1705 //
1706 HMMER3/b [3.0 | March 2010]
1707 NAME 3_End_Bacillariophyta_58S_end_two_long
1708 LENG 45
1709 ALPH DNA
1710 RF no
1711 CS no
1712 MAP yes
1713 DATE Fri Jan 20 11:41:39 2012
1714 NSEQ 2
1715 EFFN 2.000000
1716 CKSUM 3128468991
1717 STATS LOCAL MSV -7.4839 0.72820
1718 STATS LOCAL VITERBI -8.3885 0.72820
1719 STATS LOCAL FORWARD -3.5934 0.72820
1720 HMM A C G T
1721 m->m m->i m->d i->m i->i d->m d->d
1722 COMPO 1.65400 1.65338 1.16290 1.18831
1723 1.38629 1.38629 1.38629 1.38629
1724 0.04879 3.73767 3.73767 1.46634 0.26236 0.00000 *
1725 1 2.57915 2.25909 2.64442 0.28946 1 - -
1726 1.38629 1.38629 1.38629 1.38629
1727 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
1728 2 2.57915 2.25909 2.64442 0.28946 2 - -
1729 1.38629 1.38629 1.38629 1.38629
1730 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
1731 3 2.53331 3.02441 0.20344 2.88069 3 - -
1732 1.38629 1.38629 1.38629 1.38629
1733 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
1734 4 2.81865 0.23582 2.88868 2.35662 4 - -
1735 1.38629 1.38629 1.38629 1.38629
1736 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
1737 5 0.23862 2.84929 2.43386 2.70756 5 - -
1738 1.38629 1.38629 1.38629 1.38629
1739 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
1740 6 2.81865 0.23582 2.88868 2.35662 6 - -
1741 1.38629 1.38629 1.38629 1.38629
1742 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
1743 7 2.57915 2.25909 2.64442 0.28946 7 - -
1744 1.38629 1.38629 1.38629 1.38629
1745 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
1746 8 2.53331 3.02441 0.20344 2.88069 8 - -
1747 1.38629 1.38629 1.38629 1.38629
1748 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
1749 9 0.23862 2.84929 2.43386 2.70756 9 - -
1750 1.38629 1.38629 1.38629 1.38629
1751 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
1752 10 2.57915 2.25909 2.64442 0.28946 10 - -
1753 1.38629 1.38629 1.38629 1.38629
1754 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
1755 11 2.53331 3.02441 0.20344 2.88069 11 - -
1756 1.38629 1.38629 1.38629 1.38629
1757 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
1758 12 2.53331 3.02441 0.20344 2.88069 12 - -
1759 1.38629 1.38629 1.38629 1.38629
1760 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
1761 13 2.53331 3.02441 0.20344 2.88069 13 - -
1762 1.38629 1.38629 1.38629 1.38629
1763 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
1764 14 2.57915 2.25909 2.64442 0.28946 14 - -
1765 1.38629 1.38629 1.38629 1.38629
1766 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
1767 15 2.53331 3.02441 0.20344 2.88069 15 - -
1768 1.38629 1.38629 1.38629 1.38629
1769 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
1770 16 0.23862 2.84929 2.43386 2.70756 16 - -
1771 1.38629 1.38629 1.38629 1.38629
1772 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
1773 17 2.81865 0.23582 2.88868 2.35662 17 - -
1774 1.38629 1.38629 1.38629 1.38629
1775 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
1776 18 2.81865 0.23582 2.88868 2.35662 18 - -
1777 1.38629 1.38629 1.38629 1.38629
1778 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
1779 19 0.23862 2.84929 2.43386 2.70756 19 - -
1780 1.38629 1.38629 1.38629 1.38629
1781 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
1782 20 2.57915 2.25909 2.64442 0.28946 20 - -
1783 1.38629 1.38629 1.38629 1.38629
1784 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
1785 21 2.57915 2.25909 2.64442 0.28946 21 - -
1786 1.38629 1.38629 1.38629 1.38629
1787 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
1788 22 0.23862 2.84929 2.43386 2.70756 22 - -
1789 1.38629 1.38629 1.38629 1.38629
1790 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
1791 23 2.53331 3.02441 0.20344 2.88069 23 - -
1792 1.38629 1.38629 1.38629 1.38629
1793 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
1794 24 2.57915 2.25909 2.64442 0.28946 24 - -
1795 1.38629 1.38629 1.38629 1.38629
1796 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
1797 25 0.23862 2.84929 2.43386 2.70756 25 - -
1798 1.38629 1.38629 1.38629 1.38629
1799 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
1800 26 2.57915 2.25909 2.64442 0.28946 26 - -
1801 1.38629 1.38629 1.38629 1.38629
1802 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
1803 27 2.53331 3.02441 0.20344 2.88069 27 - -
1804 1.38629 1.38629 1.38629 1.38629
1805 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
1806 28 2.81865 0.23582 2.88868 2.35662 28 - -
1807 1.38629 1.38629 1.38629 1.38629
1808 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
1809 29 2.81865 0.23582 2.88868 2.35662 29 - -
1810 1.38629 1.38629 1.38629 1.38629
1811 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
1812 30 2.57915 2.25909 2.64442 0.28946 30 - -
1813 1.38629 1.38629 1.38629 1.38629
1814 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
1815 31 2.53331 3.02441 0.20344 2.88069 31 - -
1816 1.38629 1.38629 1.38629 1.38629
1817 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
1818 32 2.53331 3.02441 0.20344 2.88069 32 - -
1819 1.38629 1.38629 1.38629 1.38629
1820 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
1821 33 2.57915 2.25909 2.64442 0.28946 33 - -
1822 1.38629 1.38629 1.38629 1.38629
1823 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
1824 34 2.57915 2.25909 2.64442 0.28946 34 - -
1825 1.38629 1.38629 1.38629 1.38629
1826 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
1827 35 2.53331 3.02441 0.20344 2.88069 35 - -
1828 1.38629 1.38629 1.38629 1.38629
1829 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
1830 36 0.23862 2.84929 2.43386 2.70756 36 - -
1831 1.38629 1.38629 1.38629 1.38629
1832 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
1833 37 2.53331 3.02441 0.20344 2.88069 37 - -
1834 1.38629 1.38629 1.38629 1.38629
1835 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
1836 38 2.57915 2.25909 2.64442 0.28946 38 - -
1837 1.38629 1.38629 1.38629 1.38629
1838 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
1839 39 2.53331 3.02441 0.20344 2.88069 39 - -
1840 1.38629 1.38629 1.38629 1.38629
1841 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
1842 40 2.57915 2.25909 2.64442 0.28946 40 - -
1843 1.38629 1.38629 1.38629 1.38629
1844 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
1845 41 2.57915 2.25909 2.64442 0.28946 41 - -
1846 1.38629 1.38629 1.38629 1.38629
1847 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
1848 42 2.81865 0.23582 2.88868 2.35662 42 - -
1849 1.38629 1.38629 1.38629 1.38629
1850 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
1851 43 2.53331 3.02441 0.20344 2.88069 43 - -
1852 1.38629 1.38629 1.38629 1.38629
1853 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
1854 44 2.57915 2.25909 2.64442 0.28946 44 - -
1855 1.38629 1.38629 1.38629 1.38629
1856 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
1857 45 2.53331 3.02441 0.20344 2.88069 45 - -
1858 1.38629 1.38629 1.38629 1.38629
1859 0.02469 3.71357 * 1.46634 0.26236 0.00000 *
1860 //
1861 HMMER3/b [3.0 | March 2010]
1862 NAME 2_5.8_Bacillariophyta_58S_start_long
1863 LENG 45
1864 ALPH DNA
1865 RF no
1866 CS no
1867 MAP yes
1868 DATE Sat Oct 1 02:11:41 2011
1869 NSEQ 144
1870 EFFN 6.077637
1871 CKSUM 1030745055
1872 STATS LOCAL MSV -6.8970 0.71932
1873 STATS LOCAL VITERBI -7.5686 0.71932
1874 STATS LOCAL FORWARD -4.3787 0.71932
1875 HMM A C G T
1876 m->m m->i m->d i->m i->i d->m d->d
1877 COMPO 1.22465 1.36279 1.47544 1.50726
1878 1.38629 1.38629 1.38629 1.38629
1879 0.02446 4.41614 4.41614 1.46634 0.26236 0.00000 *
1880 1 3.99350 0.09233 4.01872 2.96069 1 - -
1881 1.38629 1.38629 1.38629 1.38629
1882 0.02446 4.41614 4.41614 1.46634 0.26236 1.09861 0.40547
1883 2 0.26673 2.37689 2.76416 2.54783 2 - -
1884 1.38629 1.38629 1.38629 1.38629
1885 0.03672 4.41614 3.73066 1.46634 0.26236 1.09861 0.40547
1886 3 0.08397 3.95853 3.18118 3.91647 3 - -
1887 1.38629 1.38629 1.38629 1.38629
1888 0.02476 4.40417 4.40417 1.46634 0.26236 0.69698 0.68932
1889 4 4.08931 0.07282 4.10855 3.29556 4 - -
1890 1.38629 1.38629 1.38629 1.38629
1891 0.02446 4.41614 4.41614 1.46634 0.26236 1.09861 0.40547
1892 5 3.60874 2.54724 3.63979 0.14115 5 - -
1893 1.38629 1.38629 1.38629 1.38629
1894 0.02446 4.41614 4.41614 1.46634 0.26236 1.09861 0.40547
1895 6 2.81521 2.90569 3.46061 0.15784 6 - -
1896 1.38629 1.38629 1.38629 1.38629
1897 0.03672 4.41614 3.73066 1.46634 0.26236 1.09861 0.40547
1898 7 3.71512 3.00075 3.73903 0.10301 7 - -
1899 1.38629 1.38629 1.38629 1.38629
1900 0.02476 4.40417 4.40417 1.46634 0.26236 0.69698 0.68932
1901 8 3.49880 0.21228 3.54875 2.02290 8 - -
1902 1.38629 1.38629 1.38629 1.38629
1903 0.02446 4.41614 4.41614 1.46634 0.26236 1.09861 0.40547
1904 9 0.20606 3.57886 2.05667 3.49231 9 - -
1905 1.38629 1.38629 1.38629 1.38629
1906 0.02446 4.41614 4.41614 1.46634 0.26236 1.09861 0.40547
1907 10 2.29832 3.79341 0.15934 3.71548 10 - -
1908 1.38629 1.38629 1.38629 1.38629
1909 0.02446 4.41614 4.41614 1.46634 0.26236 1.09861 0.40547
1910 11 3.78938 0.13609 3.82622 2.49087 11 - -
1911 1.38629 1.38629 1.38629 1.38629
1912 0.02446 4.41614 4.41614 1.46634 0.26236 1.09861 0.40547
1913 12 0.79345 2.47005 1.14686 1.92755 12 - -
1914 1.38629 1.38629 1.38629 1.38629
1915 0.02446 4.41614 4.41614 1.46634 0.26236 1.09861 0.40547
1916 13 0.64077 1.89059 1.47582 2.36937 13 - -
1917 1.38629 1.38629 1.38629 1.38629
1918 0.02446 4.41614 4.41614 1.46634 0.26236 1.09861 0.40547
1919 14 3.00490 1.28502 3.06513 0.46655 14 - -
1920 1.38629 1.38629 1.38629 1.38629
1921 0.02446 4.41614 4.41614 1.46634 0.26236 1.09861 0.40547
1922 15 3.33504 4.15230 0.07002 4.11774 15 - -
1923 1.38629 1.38629 1.38629 1.38629
1924 0.02446 4.41614 4.41614 1.46634 0.26236 1.09861 0.40547
1925 16 3.33504 4.15230 0.07002 4.11774 16 - -
1926 1.38629 1.38629 1.38629 1.38629
1927 0.02446 4.41614 4.41614 1.46634 0.26236 1.09861 0.40547
1928 17 0.08289 3.97284 3.19122 3.93205 17 - -
1929 1.38629 1.38629 1.38629 1.38629
1930 0.02446 4.41614 4.41614 1.46634 0.26236 1.09861 0.40547
1931 18 3.73173 3.01214 3.75504 0.10152 18 - -
1932 1.38629 1.38629 1.38629 1.38629
1933 0.02446 4.41614 4.41614 1.46634 0.26236 1.09861 0.40547
1934 19 3.33504 4.15230 0.07002 4.11774 19 - -
1935 1.38629 1.38629 1.38629 1.38629
1936 0.02446 4.41614 4.41614 1.46634 0.26236 1.09861 0.40547
1937 20 3.73173 3.01214 3.75504 0.10152 20 - -
1938 1.38629 1.38629 1.38629 1.38629
1939 0.02446 4.41614 4.41614 1.46634 0.26236 1.09861 0.40547
1940 21 4.08931 0.07282 4.10855 3.29556 21 - -
1941 1.38629 1.38629 1.38629 1.38629
1942 0.02446 4.41614 4.41614 1.46634 0.26236 1.09861 0.40547
1943 22 2.40870 2.82458 3.26662 0.20752 22 - -
1944 1.38629 1.38629 1.38629 1.38629
1945 0.02446 4.41614 4.41614 1.46634 0.26236 1.09861 0.40547
1946 23 0.50152 2.68344 2.57692 1.38607 23 - -
1947 1.38629 1.38629 1.38629 1.38629
1948 0.02446 4.41614 4.41614 1.46634 0.26236 1.09861 0.40547
1949 24 2.56134 3.92766 0.12541 3.86462 24 - -
1950 1.38629 1.38629 1.38629 1.38629
1951 0.02446 4.41614 4.41614 1.46634 0.26236 1.09861 0.40547
1952 25 3.33504 4.15230 0.07002 4.11774 25 - -
1953 1.38629 1.38629 1.38629 1.38629
1954 0.02446 4.41614 4.41614 1.46634 0.26236 1.09861 0.40547
1955 26 1.84788 1.37699 1.54968 0.97345 26 - -
1956 1.38629 1.38629 1.38629 1.38629
1957 0.02446 4.41614 4.41614 1.46634 0.26236 1.09861 0.40547
1958 27 3.73173 3.01214 3.75504 0.10152 27 - -
1959 1.38629 1.38629 1.38629 1.38629
1960 0.02446 4.41614 4.41614 1.46634 0.26236 1.09861 0.40547
1961 28 3.93022 0.09244 3.54057 3.22740 28 - -
1962 1.38629 1.38629 1.38629 1.38629
1963 0.02446 4.41614 4.41614 1.46634 0.26236 1.09861 0.40547
1964 29 3.23546 0.14449 3.66947 2.66353 29 - -
1965 1.38629 1.38629 1.38629 1.38629
1966 0.02446 4.41614 4.41614 1.46634 0.26236 1.09861 0.40547
1967 30 3.77053 0.11478 3.15435 3.15272 30 - -
1968 1.38629 1.38629 1.38629 1.38629
1969 0.02446 4.41614 4.41614 1.46634 0.26236 1.09861 0.40547
1970 31 0.10083 3.91055 2.90290 3.86225 31 - -
1971 1.38629 1.38629 1.38629 1.38629
1972 0.02446 4.41614 4.41614 1.46634 0.26236 1.09861 0.40547
1973 32 2.95075 0.23869 2.49016 2.56212 32 - -
1974 1.38629 1.38629 1.38629 1.38629
1975 0.02446 4.41614 4.41614 1.46634 0.26236 1.09861 0.40547
1976 33 0.16976 2.61407 3.00452 3.40117 33 - -
1977 1.38629 1.38629 1.38629 1.38629
1978 0.02446 4.41614 4.41614 1.46634 0.26236 1.09861 0.40547
1979 34 0.22861 3.21085 2.88206 2.22547 34 - -
1980 1.38629 1.38629 1.38629 1.38629
1981 0.02446 4.41614 4.41614 1.46634 0.26236 1.09861 0.40547
1982 35 3.90913 0.10987 3.93940 2.74061 35 - -
1983 1.38629 1.38629 1.38629 1.38629
1984 0.02446 4.41614 4.41614 1.46634 0.26236 1.09861 0.40547
1985 36 2.56134 3.92766 0.12541 3.86462 36 - -
1986 1.38629 1.38629 1.38629 1.38629
1987 0.02446 4.41614 4.41614 1.46634 0.26236 1.09861 0.40547
1988 37 0.08289 3.97284 3.19122 3.93205 37 - -
1989 1.38629 1.38629 1.38629 1.38629
1990 0.02446 4.41614 4.41614 1.46634 0.26236 1.09861 0.40547
1991 38 3.73173 3.01214 3.75504 0.10152 38 - -
1992 1.38629 1.38629 1.38629 1.38629
1993 0.02827 4.41614 4.14791 1.46634 0.26236 1.09861 0.40547
1994 39 3.22610 3.89440 0.10656 3.19397 39 - -
1995 1.38629 1.38629 1.38629 1.38629
1996 0.02455 4.41242 4.41242 1.46634 0.26236 0.92801 0.50309
1997 40 0.08289 3.97284 3.19122 3.93205 40 - -
1998 1.38629 1.38629 1.38629 1.38629
1999 0.02446 4.41614 4.41614 1.46634 0.26236 1.09861 0.40547
2000 41 0.15880 3.55611 2.73128 2.93474 41 - -
2001 1.38629 1.38629 1.38629 1.38629
2002 0.02446 4.41614 4.41614 1.46634 0.26236 1.09861 0.40547
2003 42 3.30078 4.06617 0.08187 3.70475 42 - -
2004 1.38629 1.38629 1.38629 1.38629
2005 0.02446 4.41614 4.41614 1.46634 0.26236 1.09861 0.40547
2006 43 0.09762 3.87464 3.15684 3.51704 43 - -
2007 1.38629 1.38629 1.38629 1.38629
2008 0.02446 4.41614 4.41614 1.46634 0.26236 1.09861 0.40547
2009 44 0.08289 3.97284 3.19122 3.93205 44 - -
2010 1.38629 1.38629 1.38629 1.38629
2011 0.02446 4.41614 4.41614 1.46634 0.26236 1.09861 0.40547
2012 45 3.80347 0.13290 3.83957 2.51762 45 - -
2013 1.38629 1.38629 1.38629 1.38629
2014 0.01230 4.40399 * 1.46634 0.26236 0.00000 *
2015 //
2016 HMMER3/b [3.0 | March 2010]
2017 NAME 4_LSU_Bacillariophyta_4_LSU_start_five_long
2018 LENG 45
2019 ALPH DNA
2020 RF no
2021 CS no
2022 MAP yes
2023 DATE Fri Jan 20 11:59:52 2012
2024 NSEQ 5
2025 EFFN 3.657227
2026 CKSUM 2111448149
2027 STATS LOCAL MSV -7.6920 0.71932
2028 STATS LOCAL VITERBI -7.6476 0.71932
2029 STATS LOCAL FORWARD -3.8455 0.71932
2030 HMM A C G T
2031 m->m m->i m->d i->m i->i d->m d->d
2032 COMPO 1.20593 1.21862 1.62039 1.57443
2033 1.38629 1.38629 1.38629 1.38629
2034 0.03474 4.07026 4.07026 1.46634 0.26236 0.00000 *
2035 1 3.54949 0.11715 3.59387 2.91298 1 - -
2036 1.38629 1.38629 1.38629 1.38629
2037 0.03474 4.07026 4.07026 1.46634 0.26236 1.09861 0.40547
2038 2 3.54949 0.11715 3.59387 2.91298 2 - -
2039 1.38629 1.38629 1.38629 1.38629
2040 0.03474 4.07026 4.07026 1.46634 0.26236 1.09861 0.40547
2041 3 3.54949 0.11715 3.59387 2.91298 3 - -
2042 1.38629 1.38629 1.38629 1.38629
2043 0.03474 4.07026 4.07026 1.46634 0.26236 1.09861 0.40547
2044 4 3.19213 2.66084 3.23628 0.16285 4 - -
2045 1.38629 1.38629 1.38629 1.38629
2046 0.03474 4.07026 4.07026 1.46634 0.26236 1.09861 0.40547
2047 5 3.01699 3.68957 0.10660 3.60505 5 - -
2048 1.38629 1.38629 1.38629 1.38629
2049 0.03474 4.07026 4.07026 1.46634 0.26236 1.09861 0.40547
2050 6 0.12921 3.48163 2.86740 3.39306 6 - -
2051 1.38629 1.38629 1.38629 1.38629
2052 0.03474 4.07026 4.07026 1.46634 0.26236 1.09861 0.40547
2053 7 3.19213 2.66084 3.23628 0.16285 7 - -
2054 1.38629 1.38629 1.38629 1.38629
2055 0.03474 4.07026 4.07026 1.46634 0.26236 1.09861 0.40547
2056 8 3.54949 0.11715 3.59387 2.91298 8 - -
2057 1.38629 1.38629 1.38629 1.38629
2058 0.03474 4.07026 4.07026 1.46634 0.26236 1.09861 0.40547
2059 9 3.19213 2.66084 3.23628 0.16285 9 - -
2060 1.38629 1.38629 1.38629 1.38629
2061 0.03474 4.07026 4.07026 1.46634 0.26236 1.09861 0.40547
2062 10 3.54949 0.11715 3.59387 2.91298 10 - -
2063 1.38629 1.38629 1.38629 1.38629
2064 0.03474 4.07026 4.07026 1.46634 0.26236 1.09861 0.40547
2065 11 0.12921 3.48163 2.86740 3.39306 11 - -
2066 1.38629 1.38629 1.38629 1.38629
2067 0.03474 4.07026 4.07026 1.46634 0.26236 1.09861 0.40547
2068 12 3.01699 3.68957 0.10660 3.60505 12 - -
2069 1.38629 1.38629 1.38629 1.38629
2070 0.03474 4.07026 4.07026 1.46634 0.26236 1.09861 0.40547
2071 13 3.54949 0.11715 3.59387 2.91298 13 - -
2072 1.38629 1.38629 1.38629 1.38629
2073 0.03474 4.07026 4.07026 1.46634 0.26236 1.09861 0.40547
2074 14 3.19213 2.66084 3.23628 0.16285 14 - -
2075 1.38629 1.38629 1.38629 1.38629
2076 0.03474 4.07026 4.07026 1.46634 0.26236 1.09861 0.40547
2077 15 3.54949 0.11715 3.59387 2.91298 15 - -
2078 1.38629 1.38629 1.38629 1.38629
2079 0.03474 4.07026 4.07026 1.46634 0.26236 1.09861 0.40547
2080 16 0.12921 3.48163 2.86740 3.39306 16 - -
2081 1.38629 1.38629 1.38629 1.38629
2082 0.03474 4.07026 4.07026 1.46634 0.26236 1.09861 0.40547
2083 17 0.12921 3.48163 2.86740 3.39306 17 - -
2084 1.38629 1.38629 1.38629 1.38629
2085 0.03474 4.07026 4.07026 1.46634 0.26236 1.09861 0.40547
2086 18 0.12921 3.48163 2.86740 3.39306 18 - -
2087 1.38629 1.38629 1.38629 1.38629
2088 0.03474 4.07026 4.07026 1.46634 0.26236 1.09861 0.40547
2089 19 3.54949 0.11715 3.59387 2.91298 19 - -
2090 1.38629 1.38629 1.38629 1.38629
2091 0.03474 4.07026 4.07026 1.46634 0.26236 1.09861 0.40547
2092 20 0.12921 3.48163 2.86740 3.39306 20 - -
2093 1.38629 1.38629 1.38629 1.38629
2094 0.03474 4.07026 4.07026 1.46634 0.26236 1.09861 0.40547
2095 21 0.12921 3.48163 2.86740 3.39306 21 - -
2096 1.38629 1.38629 1.38629 1.38629
2097 0.03474 4.07026 4.07026 1.46634 0.26236 1.09861 0.40547
2098 22 3.01699 3.68957 0.10660 3.60505 22 - -
2099 1.38629 1.38629 1.38629 1.38629
2100 0.03474 4.07026 4.07026 1.46634 0.26236 1.09861 0.40547
2101 23 3.01699 3.68957 0.10660 3.60505 23 - -
2102 1.38629 1.38629 1.38629 1.38629
2103 0.03474 4.07026 4.07026 1.46634 0.26236 1.09861 0.40547
2104 24 2.14931 2.23541 0.80168 1.11501 24 - -
2105 1.38629 1.38629 1.38629 1.38629
2106 0.03474 4.07026 4.07026 1.46634 0.26236 1.09861 0.40547
2107 25 2.14931 2.23541 0.80168 1.11501 25 - -
2108 1.38629 1.38629 1.38629 1.38629
2109 0.03474 4.07026 4.07026 1.46634 0.26236 1.09861 0.40547
2110 26 0.12921 3.48163 2.86740 3.39306 26 - -
2111 1.38629 1.38629 1.38629 1.38629
2112 0.03474 4.07026 4.07026 1.46634 0.26236 1.09861 0.40547
2113 27 3.54949 0.11715 3.59387 2.91298 27 - -
2114 1.38629 1.38629 1.38629 1.38629
2115 0.03474 4.07026 4.07026 1.46634 0.26236 1.09861 0.40547
2116 28 3.54949 0.11715 3.59387 2.91298 28 - -
2117 1.38629 1.38629 1.38629 1.38629
2118 0.03474 4.07026 4.07026 1.46634 0.26236 1.09861 0.40547
2119 29 3.54949 0.11715 3.59387 2.91298 29 - -
2120 1.38629 1.38629 1.38629 1.38629
2121 0.03474 4.07026 4.07026 1.46634 0.26236 1.09861 0.40547
2122 30 3.01699 3.68957 0.10660 3.60505 30 - -
2123 1.38629 1.38629 1.38629 1.38629
2124 0.03474 4.07026 4.07026 1.46634 0.26236 1.09861 0.40547
2125 31 3.54949 0.11715 3.59387 2.91298 31 - -
2126 1.38629 1.38629 1.38629 1.38629
2127 0.03474 4.07026 4.07026 1.46634 0.26236 1.09861 0.40547
2128 32 3.19213 2.66084 3.23628 0.16285 32 - -
2129 1.38629 1.38629 1.38629 1.38629
2130 0.03474 4.07026 4.07026 1.46634 0.26236 1.09861 0.40547
2131 33 3.01699 3.68957 0.10660 3.60505 33 - -
2132 1.38629 1.38629 1.38629 1.38629
2133 0.03474 4.07026 4.07026 1.46634 0.26236 1.09861 0.40547
2134 34 0.12921 3.48163 2.86740 3.39306 34 - -
2135 1.38629 1.38629 1.38629 1.38629
2136 0.03474 4.07026 4.07026 1.46634 0.26236 1.09861 0.40547
2137 35 0.12921 3.48163 2.86740 3.39306 35 - -
2138 1.38629 1.38629 1.38629 1.38629
2139 0.03474 4.07026 4.07026 1.46634 0.26236 1.09861 0.40547
2140 36 2.48946 0.73109 2.56123 1.02596 36 - -
2141 1.38629 1.38629 1.38629 1.38629
2142 0.03474 4.07026 4.07026 1.46634 0.26236 1.09861 0.40547
2143 37 3.19213 2.66084 3.23628 0.16285 37 - -
2144 1.38629 1.38629 1.38629 1.38629
2145 0.03474 4.07026 4.07026 1.46634 0.26236 1.09861 0.40547
2146 38 3.19213 2.66084 3.23628 0.16285 38 - -
2147 1.38629 1.38629 1.38629 1.38629
2148 0.03474 4.07026 4.07026 1.46634 0.26236 1.09861 0.40547
2149 39 0.12921 3.48163 2.86740 3.39306 39 - -
2150 1.38629 1.38629 1.38629 1.38629
2151 0.03474 4.07026 4.07026 1.46634 0.26236 1.09861 0.40547
2152 40 0.12921 3.48163 2.86740 3.39306 40 - -
2153 1.38629 1.38629 1.38629 1.38629
2154 0.03474 4.07026 4.07026 1.46634 0.26236 1.09861 0.40547
2155 41 3.01699 3.68957 0.10660 3.60505 41 - -
2156 1.38629 1.38629 1.38629 1.38629
2157 0.03474 4.07026 4.07026 1.46634 0.26236 1.09861 0.40547
2158 42 3.54949 0.11715 3.59387 2.91298 42 - -
2159 1.38629 1.38629 1.38629 1.38629
2160 0.03474 4.07026 4.07026 1.46634 0.26236 1.09861 0.40547
2161 43 0.12921 3.48163 2.86740 3.39306 43 - -
2162 1.38629 1.38629 1.38629 1.38629
2163 0.03474 4.07026 4.07026 1.46634 0.26236 1.09861 0.40547
2164 44 3.19213 2.66084 3.23628 0.16285 44 - -
2165 1.38629 1.38629 1.38629 1.38629
2166 0.03474 4.07026 4.07026 1.46634 0.26236 1.09861 0.40547
2167 45 0.12921 3.48163 2.86740 3.39306 45 - -
2168 1.38629 1.38629 1.38629 1.38629
2169 0.01752 4.05304 * 1.46634 0.26236 0.00000 *
2170 //
2171 HMMER3/b [3.0 | March 2010]
2172 NAME 4_LSU_Bacillariophyta_4_LSU_start_four_long
2173 LENG 45
2174 ALPH DNA
2175 RF no
2176 CS no
2177 MAP yes
2178 DATE Fri Jan 20 11:59:43 2012
2179 NSEQ 2
2180 EFFN 2.000000
2181 CKSUM 3289991583
2182 STATS LOCAL MSV -7.5573 0.72794
2183 STATS LOCAL VITERBI -8.1212 0.72794
2184 STATS LOCAL FORWARD -3.3703 0.72794
2185 HMM A C G T
2186 m->m m->i m->d i->m i->i d->m d->d
2187 COMPO 1.23978 1.40458 1.43017 1.48805
2188 1.38629 1.38629 1.38629 1.38629
2189 0.04879 3.73767 3.73767 1.46634 0.26236 0.00000 *
2190 1 2.57915 2.25909 2.64442 0.28946 1 - -
2191 1.38629 1.38629 1.38629 1.38629
2192 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
2193 2 2.53331 3.02441 0.20344 2.88069 2 - -
2194 1.38629 1.38629 1.38629 1.38629
2195 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
2196 3 2.81865 0.23582 2.88868 2.35662 3 - -
2197 1.38629 1.38629 1.38629 1.38629
2198 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
2199 4 2.57915 2.25909 2.64442 0.28946 4 - -
2200 1.38629 1.38629 1.38629 1.38629
2201 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
2202 5 2.53331 3.02441 0.20344 2.88069 5 - -
2203 1.38629 1.38629 1.38629 1.38629
2204 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
2205 6 0.23862 2.84929 2.43386 2.70756 6 - -
2206 1.38629 1.38629 1.38629 1.38629
2207 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
2208 7 2.57915 2.25909 2.64442 0.28946 7 - -
2209 1.38629 1.38629 1.38629 1.38629
2210 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
2211 8 2.81865 0.23582 2.88868 2.35662 8 - -
2212 1.38629 1.38629 1.38629 1.38629
2213 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
2214 9 2.57915 2.25909 2.64442 0.28946 9 - -
2215 1.38629 1.38629 1.38629 1.38629
2216 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
2217 10 2.81865 0.23582 2.88868 2.35662 10 - -
2218 1.38629 1.38629 1.38629 1.38629
2219 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
2220 11 0.23862 2.84929 2.43386 2.70756 11 - -
2221 1.38629 1.38629 1.38629 1.38629
2222 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
2223 12 2.53331 3.02441 0.20344 2.88069 12 - -
2224 1.38629 1.38629 1.38629 1.38629
2225 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
2226 13 2.81865 0.23582 2.88868 2.35662 13 - -
2227 1.38629 1.38629 1.38629 1.38629
2228 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
2229 14 2.57915 2.25909 2.64442 0.28946 14 - -
2230 1.38629 1.38629 1.38629 1.38629
2231 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
2232 15 2.81865 0.23582 2.88868 2.35662 15 - -
2233 1.38629 1.38629 1.38629 1.38629
2234 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
2235 16 0.23862 2.84929 2.43386 2.70756 16 - -
2236 1.38629 1.38629 1.38629 1.38629
2237 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
2238 17 0.23862 2.84929 2.43386 2.70756 17 - -
2239 1.38629 1.38629 1.38629 1.38629
2240 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
2241 18 2.53331 3.02441 0.20344 2.88069 18 - -
2242 1.38629 1.38629 1.38629 1.38629
2243 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
2244 19 2.81865 0.23582 2.88868 2.35662 19 - -
2245 1.38629 1.38629 1.38629 1.38629
2246 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
2247 20 0.23862 2.84929 2.43386 2.70756 20 - -
2248 1.38629 1.38629 1.38629 1.38629
2249 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
2250 21 0.23862 2.84929 2.43386 2.70756 21 - -
2251 1.38629 1.38629 1.38629 1.38629
2252 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
2253 22 2.53331 3.02441 0.20344 2.88069 22 - -
2254 1.38629 1.38629 1.38629 1.38629
2255 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
2256 23 0.23862 2.84929 2.43386 2.70756 23 - -
2257 1.38629 1.38629 1.38629 1.38629
2258 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
2259 24 2.53331 3.02441 0.20344 2.88069 24 - -
2260 1.38629 1.38629 1.38629 1.38629
2261 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
2262 25 2.53331 3.02441 0.20344 2.88069 25 - -
2263 1.38629 1.38629 1.38629 1.38629
2264 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
2265 26 0.23862 2.84929 2.43386 2.70756 26 - -
2266 1.38629 1.38629 1.38629 1.38629
2267 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
2268 27 2.81865 0.23582 2.88868 2.35662 27 - -
2269 1.38629 1.38629 1.38629 1.38629
2270 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
2271 28 2.81865 0.23582 2.88868 2.35662 28 - -
2272 1.38629 1.38629 1.38629 1.38629
2273 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
2274 29 2.81865 0.23582 2.88868 2.35662 29 - -
2275 1.38629 1.38629 1.38629 1.38629
2276 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
2277 30 2.53331 3.02441 0.20344 2.88069 30 - -
2278 1.38629 1.38629 1.38629 1.38629
2279 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
2280 31 2.81865 0.23582 2.88868 2.35662 31 - -
2281 1.38629 1.38629 1.38629 1.38629
2282 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
2283 32 2.57915 2.25909 2.64442 0.28946 32 - -
2284 1.38629 1.38629 1.38629 1.38629
2285 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
2286 33 2.53331 3.02441 0.20344 2.88069 33 - -
2287 1.38629 1.38629 1.38629 1.38629
2288 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
2289 34 0.23862 2.84929 2.43386 2.70756 34 - -
2290 1.38629 1.38629 1.38629 1.38629
2291 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
2292 35 0.23862 2.84929 2.43386 2.70756 35 - -
2293 1.38629 1.38629 1.38629 1.38629
2294 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
2295 36 2.57915 2.25909 2.64442 0.28946 36 - -
2296 1.38629 1.38629 1.38629 1.38629
2297 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
2298 37 2.57915 2.25909 2.64442 0.28946 37 - -
2299 1.38629 1.38629 1.38629 1.38629
2300 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
2301 38 2.57915 2.25909 2.64442 0.28946 38 - -
2302 1.38629 1.38629 1.38629 1.38629
2303 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
2304 39 0.23862 2.84929 2.43386 2.70756 39 - -
2305 1.38629 1.38629 1.38629 1.38629
2306 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
2307 40 0.23862 2.84929 2.43386 2.70756 40 - -
2308 1.38629 1.38629 1.38629 1.38629
2309 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
2310 41 2.53331 3.02441 0.20344 2.88069 41 - -
2311 1.38629 1.38629 1.38629 1.38629
2312 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
2313 42 2.81865 0.23582 2.88868 2.35662 42 - -
2314 1.38629 1.38629 1.38629 1.38629
2315 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
2316 43 0.23862 2.84929 2.43386 2.70756 43 - -
2317 1.38629 1.38629 1.38629 1.38629
2318 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
2319 44 2.57915 2.25909 2.64442 0.28946 44 - -
2320 1.38629 1.38629 1.38629 1.38629
2321 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
2322 45 0.23862 2.84929 2.43386 2.70756 45 - -
2323 1.38629 1.38629 1.38629 1.38629
2324 0.02469 3.71357 * 1.46634 0.26236 0.00000 *
2325 //
2326 HMMER3/b [3.0 | March 2010]
2327 NAME 4_LSU_Bacillariophyta_4_LSU_start_one_long
2328 LENG 45
2329 ALPH DNA
2330 RF no
2331 CS no
2332 MAP yes
2333 DATE Fri Jan 20 11:59:19 2012
2334 NSEQ 40
2335 EFFN 3.999023
2336 CKSUM 706348853
2337 STATS LOCAL MSV -7.2263 0.71931
2338 STATS LOCAL VITERBI -7.6120 0.71931
2339 STATS LOCAL FORWARD -3.8186 0.71931
2340 HMM A C G T
2341 m->m m->i m->d i->m i->i d->m d->d
2342 COMPO 1.14058 1.36426 1.52942 1.56957
2343 1.38629 1.38629 1.38629 1.38629
2344 0.03280 4.12698 4.12698 1.46634 0.26236 0.00000 *
2345 1 2.44979 2.56427 2.94985 0.24288 1 - -
2346 1.38629 1.38629 1.38629 1.38629
2347 0.03280 4.12698 4.12698 1.46634 0.26236 1.09861 0.40547
2348 2 2.54426 1.07425 2.61378 0.67992 2 - -
2349 1.38629 1.38629 1.38629 1.38629
2350 0.03280 4.12698 4.12698 1.46634 0.26236 1.09861 0.40547
2351 3 3.50322 0.13678 3.54889 2.67387 3 - -
2352 1.38629 1.38629 1.38629 1.38629
2353 0.03280 4.12698 4.12698 1.46634 0.26236 1.09861 0.40547
2354 4 2.20358 2.29709 0.74699 1.15439 4 - -
2355 1.38629 1.38629 1.38629 1.38629
2356 0.03280 4.12698 4.12698 1.46634 0.26236 1.09861 0.40547
2357 5 3.07859 3.78078 0.09805 3.70627 5 - -
2358 1.38629 1.38629 1.38629 1.38629
2359 0.03280 4.12698 4.12698 1.46634 0.26236 1.09861 0.40547
2360 6 0.15910 3.34062 2.82940 2.94454 6 - -
2361 1.38629 1.38629 1.38629 1.38629
2362 0.03280 4.12698 4.12698 1.46634 0.26236 1.09861 0.40547
2363 7 3.28900 2.72228 3.32934 0.14947 7 - -
2364 1.38629 1.38629 1.38629 1.38629
2365 0.03280 4.12698 4.12698 1.46634 0.26236 1.09861 0.40547
2366 8 3.65491 0.10660 3.69447 2.98796 8 - -
2367 1.38629 1.38629 1.38629 1.38629
2368 0.03280 4.12698 4.12698 1.46634 0.26236 1.09861 0.40547
2369 9 3.28900 2.72228 3.32934 0.14947 9 - -
2370 1.38629 1.38629 1.38629 1.38629
2371 0.03280 4.12698 4.12698 1.46634 0.26236 1.09861 0.40547
2372 10 3.65491 0.10660 3.69447 2.98796 10 - -
2373 1.38629 1.38629 1.38629 1.38629
2374 0.03280 4.12698 4.12698 1.46634 0.26236 1.09861 0.40547
2375 11 0.11873 3.57431 2.92691 3.49490 11 - -
2376 1.38629 1.38629 1.38629 1.38629
2377 0.03280 4.12698 4.12698 1.46634 0.26236 1.09861 0.40547
2378 12 3.07859 3.78078 0.09805 3.70627 12 - -
2379 1.38629 1.38629 1.38629 1.38629
2380 0.03280 4.12698 4.12698 1.46634 0.26236 1.09861 0.40547
2381 13 0.30331 2.14137 2.57045 2.69362 13 - -
2382 1.38629 1.38629 1.38629 1.38629
2383 0.03280 4.12698 4.12698 1.46634 0.26236 1.09861 0.40547
2384 14 3.28900 2.72228 3.32934 0.14947 14 - -
2385 1.38629 1.38629 1.38629 1.38629
2386 0.03280 4.12698 4.12698 1.46634 0.26236 1.09861 0.40547
2387 15 3.65491 0.10660 3.69447 2.98796 15 - -
2388 1.38629 1.38629 1.38629 1.38629
2389 0.03280 4.12698 4.12698 1.46634 0.26236 1.09861 0.40547
2390 16 0.11873 3.57431 2.92691 3.49490 16 - -
2391 1.38629 1.38629 1.38629 1.38629
2392 0.03280 4.12698 4.12698 1.46634 0.26236 1.09861 0.40547
2393 17 0.11873 3.57431 2.92691 3.49490 17 - -
2394 1.38629 1.38629 1.38629 1.38629
2395 0.03280 4.12698 4.12698 1.46634 0.26236 1.09861 0.40547
2396 18 3.07859 3.78078 0.09805 3.70627 18 - -
2397 1.38629 1.38629 1.38629 1.38629
2398 0.03280 4.12698 4.12698 1.46634 0.26236 1.09861 0.40547
2399 19 3.43616 0.15164 3.48450 2.55302 19 - -
2400 1.38629 1.38629 1.38629 1.38629
2401 0.03280 4.12698 4.12698 1.46634 0.26236 1.09861 0.40547
2402 20 0.11873 3.57431 2.92691 3.49490 20 - -
2403 1.38629 1.38629 1.38629 1.38629
2404 0.03280 4.12698 4.12698 1.46634 0.26236 1.09861 0.40547
2405 21 0.11873 3.57431 2.92691 3.49490 21 - -
2406 1.38629 1.38629 1.38629 1.38629
2407 0.03280 4.12698 4.12698 1.46634 0.26236 1.09861 0.40547
2408 22 3.07859 3.78078 0.09805 3.70627 22 - -
2409 1.38629 1.38629 1.38629 1.38629
2410 0.03280 4.12698 4.12698 1.46634 0.26236 1.09861 0.40547
2411 23 0.14321 3.47772 2.67523 3.39148 23 - -
2412 1.38629 1.38629 1.38629 1.38629
2413 0.03280 4.12698 4.12698 1.46634 0.26236 1.09861 0.40547
2414 24 1.21241 2.20089 0.91483 1.65428 24 - -
2415 1.38629 1.38629 1.38629 1.38629
2416 0.03280 4.12698 4.12698 1.46634 0.26236 1.09861 0.40547
2417 25 3.07859 3.78078 0.09805 3.70627 25 - -
2418 1.38629 1.38629 1.38629 1.38629
2419 0.03280 4.12698 4.12698 1.46634 0.26236 1.09861 0.40547
2420 26 0.11873 3.57431 2.92691 3.49490 26 - -
2421 1.38629 1.38629 1.38629 1.38629
2422 0.03280 4.12698 4.12698 1.46634 0.26236 1.09861 0.40547
2423 27 3.65491 0.10660 3.69447 2.98796 27 - -
2424 1.38629 1.38629 1.38629 1.38629
2425 0.03280 4.12698 4.12698 1.46634 0.26236 1.09861 0.40547
2426 28 3.65491 0.10660 3.69447 2.98796 28 - -
2427 1.38629 1.38629 1.38629 1.38629
2428 0.03280 4.12698 4.12698 1.46634 0.26236 1.09861 0.40547
2429 29 3.65491 0.10660 3.69447 2.98796 29 - -
2430 1.38629 1.38629 1.38629 1.38629
2431 0.03280 4.12698 4.12698 1.46634 0.26236 1.09861 0.40547
2432 30 3.07859 3.78078 0.09805 3.70627 30 - -
2433 1.38629 1.38629 1.38629 1.38629
2434 0.03280 4.12698 4.12698 1.46634 0.26236 1.09861 0.40547
2435 31 3.65491 0.10660 3.69447 2.98796 31 - -
2436 1.38629 1.38629 1.38629 1.38629
2437 0.03280 4.12698 4.12698 1.46634 0.26236 1.09861 0.40547
2438 32 3.18188 0.22051 3.23916 2.14400 32 - -
2439 1.38629 1.38629 1.38629 1.38629
2440 0.03280 4.12698 4.12698 1.46634 0.26236 1.09861 0.40547
2441 33 3.07859 3.78078 0.09805 3.70627 33 - -
2442 1.38629 1.38629 1.38629 1.38629
2443 0.03280 4.12698 4.12698 1.46634 0.26236 1.09861 0.40547
2444 34 0.11873 3.57431 2.92691 3.49490 34 - -
2445 1.38629 1.38629 1.38629 1.38629
2446 0.03280 4.12698 4.12698 1.46634 0.26236 1.09861 0.40547
2447 35 0.11873 3.57431 2.92691 3.49490 35 - -
2448 1.38629 1.38629 1.38629 1.38629
2449 0.03280 4.12698 4.12698 1.46634 0.26236 1.09861 0.40547
2450 36 3.28900 2.72228 3.32934 0.14947 36 - -
2451 1.38629 1.38629 1.38629 1.38629
2452 0.03280 4.12698 4.12698 1.46634 0.26236 1.09861 0.40547
2453 37 3.28900 2.72228 3.32934 0.14947 37 - -
2454 1.38629 1.38629 1.38629 1.38629
2455 0.03280 4.12698 4.12698 1.46634 0.26236 1.09861 0.40547
2456 38 3.28900 2.72228 3.32934 0.14947 38 - -
2457 1.38629 1.38629 1.38629 1.38629
2458 0.03280 4.12698 4.12698 1.46634 0.26236 1.09861 0.40547
2459 39 0.11873 3.57431 2.92691 3.49490 39 - -
2460 1.38629 1.38629 1.38629 1.38629
2461 0.03280 4.12698 4.12698 1.46634 0.26236 1.09861 0.40547
2462 40 0.11873 3.57431 2.92691 3.49490 40 - -
2463 1.38629 1.38629 1.38629 1.38629
2464 0.03280 4.12698 4.12698 1.46634 0.26236 1.09861 0.40547
2465 41 3.07859 3.78078 0.09805 3.70627 41 - -
2466 1.38629 1.38629 1.38629 1.38629
2467 0.03280 4.12698 4.12698 1.46634 0.26236 1.09861 0.40547
2468 42 3.65491 0.10660 3.69447 2.98796 42 - -
2469 1.38629 1.38629 1.38629 1.38629
2470 0.03280 4.12698 4.12698 1.46634 0.26236 1.09861 0.40547
2471 43 0.11873 3.57431 2.92691 3.49490 43 - -
2472 1.38629 1.38629 1.38629 1.38629
2473 0.03280 4.12698 4.12698 1.46634 0.26236 1.09861 0.40547
2474 44 3.28900 2.72228 3.32934 0.14947 44 - -
2475 1.38629 1.38629 1.38629 1.38629
2476 0.03280 4.12698 4.12698 1.46634 0.26236 1.09861 0.40547
2477 45 0.11873 3.57431 2.92691 3.49490 45 - -
2478 1.38629 1.38629 1.38629 1.38629
2479 0.01653 4.11071 * 1.46634 0.26236 0.00000 *
2480 //
2481 HMMER3/b [3.0 | March 2010]
2482 NAME 4_LSU_Bacillariophyta_4_LSU_start_six_long
2483 LENG 45
2484 ALPH DNA
2485 RF no
2486 CS no
2487 MAP yes
2488 DATE Fri Jan 20 12:00:01 2012
2489 NSEQ 2
2490 EFFN 2.000000
2491 CKSUM 274407066
2492 STATS LOCAL MSV -7.5697 0.72844
2493 STATS LOCAL VITERBI -7.9859 0.72844
2494 STATS LOCAL FORWARD -3.2875 0.72844
2495 HMM A C G T
2496 m->m m->i m->d i->m i->i d->m d->d
2497 COMPO 1.14546 1.45292 1.63473 1.37424
2498 1.38629 1.38629 1.38629 1.38629
2499 0.04879 3.73767 3.73767 1.46634 0.26236 0.00000 *
2500 1 2.81865 0.23582 2.88868 2.35662 1 - -
2501 1.38629 1.38629 1.38629 1.38629
2502 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
2503 2 2.57915 2.25909 2.64442 0.28946 2 - -
2504 1.38629 1.38629 1.38629 1.38629
2505 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
2506 3 2.81865 0.23582 2.88868 2.35662 3 - -
2507 1.38629 1.38629 1.38629 1.38629
2508 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
2509 4 2.57915 2.25909 2.64442 0.28946 4 - -
2510 1.38629 1.38629 1.38629 1.38629
2511 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
2512 5 2.53331 3.02441 0.20344 2.88069 5 - -
2513 1.38629 1.38629 1.38629 1.38629
2514 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
2515 6 0.23862 2.84929 2.43386 2.70756 6 - -
2516 1.38629 1.38629 1.38629 1.38629
2517 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
2518 7 2.57915 2.25909 2.64442 0.28946 7 - -
2519 1.38629 1.38629 1.38629 1.38629
2520 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
2521 8 2.81865 0.23582 2.88868 2.35662 8 - -
2522 1.38629 1.38629 1.38629 1.38629
2523 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
2524 9 2.57915 2.25909 2.64442 0.28946 9 - -
2525 1.38629 1.38629 1.38629 1.38629
2526 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
2527 10 2.81865 0.23582 2.88868 2.35662 10 - -
2528 1.38629 1.38629 1.38629 1.38629
2529 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
2530 11 0.23862 2.84929 2.43386 2.70756 11 - -
2531 1.38629 1.38629 1.38629 1.38629
2532 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
2533 12 2.53331 3.02441 0.20344 2.88069 12 - -
2534 1.38629 1.38629 1.38629 1.38629
2535 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
2536 13 0.23862 2.84929 2.43386 2.70756 13 - -
2537 1.38629 1.38629 1.38629 1.38629
2538 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
2539 14 2.57915 2.25909 2.64442 0.28946 14 - -
2540 1.38629 1.38629 1.38629 1.38629
2541 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
2542 15 2.81865 0.23582 2.88868 2.35662 15 - -
2543 1.38629 1.38629 1.38629 1.38629
2544 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
2545 16 0.23862 2.84929 2.43386 2.70756 16 - -
2546 1.38629 1.38629 1.38629 1.38629
2547 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
2548 17 2.57915 2.25909 2.64442 0.28946 17 - -
2549 1.38629 1.38629 1.38629 1.38629
2550 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
2551 18 2.53331 3.02441 0.20344 2.88069 18 - -
2552 1.38629 1.38629 1.38629 1.38629
2553 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
2554 19 2.57915 2.25909 2.64442 0.28946 19 - -
2555 1.38629 1.38629 1.38629 1.38629
2556 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
2557 20 0.23862 2.84929 2.43386 2.70756 20 - -
2558 1.38629 1.38629 1.38629 1.38629
2559 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
2560 21 0.23862 2.84929 2.43386 2.70756 21 - -
2561 1.38629 1.38629 1.38629 1.38629
2562 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
2563 22 2.53331 3.02441 0.20344 2.88069 22 - -
2564 1.38629 1.38629 1.38629 1.38629
2565 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
2566 23 0.23862 2.84929 2.43386 2.70756 23 - -
2567 1.38629 1.38629 1.38629 1.38629
2568 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
2569 24 0.23862 2.84929 2.43386 2.70756 24 - -
2570 1.38629 1.38629 1.38629 1.38629
2571 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
2572 25 0.23862 2.84929 2.43386 2.70756 25 - -
2573 1.38629 1.38629 1.38629 1.38629
2574 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
2575 26 0.23862 2.84929 2.43386 2.70756 26 - -
2576 1.38629 1.38629 1.38629 1.38629
2577 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
2578 27 2.81865 0.23582 2.88868 2.35662 27 - -
2579 1.38629 1.38629 1.38629 1.38629
2580 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
2581 28 2.81865 0.23582 2.88868 2.35662 28 - -
2582 1.38629 1.38629 1.38629 1.38629
2583 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
2584 29 2.81865 0.23582 2.88868 2.35662 29 - -
2585 1.38629 1.38629 1.38629 1.38629
2586 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
2587 30 2.53331 3.02441 0.20344 2.88069 30 - -
2588 1.38629 1.38629 1.38629 1.38629
2589 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
2590 31 2.81865 0.23582 2.88868 2.35662 31 - -
2591 1.38629 1.38629 1.38629 1.38629
2592 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
2593 32 2.57915 2.25909 2.64442 0.28946 32 - -
2594 1.38629 1.38629 1.38629 1.38629
2595 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
2596 33 2.53331 3.02441 0.20344 2.88069 33 - -
2597 1.38629 1.38629 1.38629 1.38629
2598 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
2599 34 0.23862 2.84929 2.43386 2.70756 34 - -
2600 1.38629 1.38629 1.38629 1.38629
2601 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
2602 35 0.23862 2.84929 2.43386 2.70756 35 - -
2603 1.38629 1.38629 1.38629 1.38629
2604 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
2605 36 2.57915 2.25909 2.64442 0.28946 36 - -
2606 1.38629 1.38629 1.38629 1.38629
2607 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
2608 37 2.57915 2.25909 2.64442 0.28946 37 - -
2609 1.38629 1.38629 1.38629 1.38629
2610 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
2611 38 2.57915 2.25909 2.64442 0.28946 38 - -
2612 1.38629 1.38629 1.38629 1.38629
2613 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
2614 39 0.23862 2.84929 2.43386 2.70756 39 - -
2615 1.38629 1.38629 1.38629 1.38629
2616 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
2617 40 0.23862 2.84929 2.43386 2.70756 40 - -
2618 1.38629 1.38629 1.38629 1.38629
2619 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
2620 41 2.53331 3.02441 0.20344 2.88069 41 - -
2621 1.38629 1.38629 1.38629 1.38629
2622 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
2623 42 2.81865 0.23582 2.88868 2.35662 42 - -
2624 1.38629 1.38629 1.38629 1.38629
2625 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
2626 43 0.23862 2.84929 2.43386 2.70756 43 - -
2627 1.38629 1.38629 1.38629 1.38629
2628 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
2629 44 2.57915 2.25909 2.64442 0.28946 44 - -
2630 1.38629 1.38629 1.38629 1.38629
2631 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
2632 45 0.23862 2.84929 2.43386 2.70756 45 - -
2633 1.38629 1.38629 1.38629 1.38629
2634 0.02469 3.71357 * 1.46634 0.26236 0.00000 *
2635 //
2636 HMMER3/b [3.0 | March 2010]
2637 NAME 4_LSU_Bacillariophyta_4_LSU_start_three_long
2638 LENG 45
2639 ALPH DNA
2640 RF no
2641 CS no
2642 MAP yes
2643 DATE Fri Jan 20 11:59:35 2012
2644 NSEQ 15
2645 EFFN 3.643799
2646 CKSUM 2793155846
2647 STATS LOCAL MSV -7.7992 0.71932
2648 STATS LOCAL VITERBI -7.4552 0.71932
2649 STATS LOCAL FORWARD -3.9887 0.71932
2650 HMM A C G T
2651 m->m m->i m->d i->m i->i d->m d->d
2652 COMPO 1.10595 1.60246 1.61822 1.31136
2653 1.38629 1.38629 1.38629 1.38629
2654 0.03482 4.06797 4.06797 1.46634 0.26236 0.00000 *
2655 1 3.18815 2.65832 3.23245 0.16343 1 - -
2656 1.38629 1.38629 1.38629 1.38629
2657 0.03482 4.06797 4.06797 1.46634 0.26236 1.09861 0.40547
2658 2 0.12967 3.47777 2.86492 3.38883 2 - -
2659 1.38629 1.38629 1.38629 1.38629
2660 0.03482 4.06797 4.06797 1.46634 0.26236 1.09861 0.40547
2661 3 3.18815 2.65832 3.23245 0.16343 3 - -
2662 1.38629 1.38629 1.38629 1.38629
2663 0.03482 4.06797 4.06797 1.46634 0.26236 1.09861 0.40547
2664 4 3.01439 3.68574 0.10698 3.60080 4 - -
2665 1.38629 1.38629 1.38629 1.38629
2666 0.03482 4.06797 4.06797 1.46634 0.26236 1.09861 0.40547
2667 5 1.33274 2.70507 0.52349 2.56483 5 - -
2668 1.38629 1.38629 1.38629 1.38629
2669 0.03482 4.06797 4.06797 1.46634 0.26236 1.09861 0.40547
2670 6 0.12967 3.47777 2.86492 3.38883 6 - -
2671 1.38629 1.38629 1.38629 1.38629
2672 0.03482 4.06797 4.06797 1.46634 0.26236 1.09861 0.40547
2673 7 3.18815 2.65832 3.23245 0.16343 7 - -
2674 1.38629 1.38629 1.38629 1.38629
2675 0.03482 4.06797 4.06797 1.46634 0.26236 1.09861 0.40547
2676 8 3.54508 0.11761 3.58965 2.90982 8 - -
2677 1.38629 1.38629 1.38629 1.38629
2678 0.03482 4.06797 4.06797 1.46634 0.26236 1.09861 0.40547
2679 9 3.18815 2.65832 3.23245 0.16343 9 - -
2680 1.38629 1.38629 1.38629 1.38629
2681 0.03482 4.06797 4.06797 1.46634 0.26236 1.09861 0.40547
2682 10 3.54508 0.11761 3.58965 2.90982 10 - -
2683 1.38629 1.38629 1.38629 1.38629
2684 0.03482 4.06797 4.06797 1.46634 0.26236 1.09861 0.40547
2685 11 0.12967 3.47777 2.86492 3.38883 11 - -
2686 1.38629 1.38629 1.38629 1.38629
2687 0.03482 4.06797 4.06797 1.46634 0.26236 1.09861 0.40547
2688 12 3.01439 3.68574 0.10698 3.60080 12 - -
2689 1.38629 1.38629 1.38629 1.38629
2690 0.03482 4.06797 4.06797 1.46634 0.26236 1.09861 0.40547
2691 13 0.12967 3.47777 2.86492 3.38883 13 - -
2692 1.38629 1.38629 1.38629 1.38629
2693 0.03482 4.06797 4.06797 1.46634 0.26236 1.09861 0.40547
2694 14 3.18815 2.65832 3.23245 0.16343 14 - -
2695 1.38629 1.38629 1.38629 1.38629
2696 0.03482 4.06797 4.06797 1.46634 0.26236 1.09861 0.40547
2697 15 3.18815 2.65832 3.23245 0.16343 15 - -
2698 1.38629 1.38629 1.38629 1.38629
2699 0.03482 4.06797 4.06797 1.46634 0.26236 1.09861 0.40547
2700 16 0.51418 2.68429 1.36497 2.54654 16 - -
2701 1.38629 1.38629 1.38629 1.38629
2702 0.03482 4.06797 4.06797 1.46634 0.26236 1.09861 0.40547
2703 17 0.12967 3.47777 2.86492 3.38883 17 - -
2704 1.38629 1.38629 1.38629 1.38629
2705 0.03482 4.06797 4.06797 1.46634 0.26236 1.09861 0.40547
2706 18 3.01439 3.68574 0.10698 3.60080 18 - -
2707 1.38629 1.38629 1.38629 1.38629
2708 0.03482 4.06797 4.06797 1.46634 0.26236 1.09861 0.40547
2709 19 3.18815 2.65832 3.23245 0.16343 19 - -
2710 1.38629 1.38629 1.38629 1.38629
2711 0.03482 4.06797 4.06797 1.46634 0.26236 1.09861 0.40547
2712 20 0.12967 3.47777 2.86492 3.38883 20 - -
2713 1.38629 1.38629 1.38629 1.38629
2714 0.03482 4.06797 4.06797 1.46634 0.26236 1.09861 0.40547
2715 21 0.12967 3.47777 2.86492 3.38883 21 - -
2716 1.38629 1.38629 1.38629 1.38629
2717 0.03482 4.06797 4.06797 1.46634 0.26236 1.09861 0.40547
2718 22 3.01439 3.68574 0.10698 3.60080 22 - -
2719 1.38629 1.38629 1.38629 1.38629
2720 0.03482 4.06797 4.06797 1.46634 0.26236 1.09861 0.40547
2721 23 0.12967 3.47777 2.86492 3.38883 23 - -
2722 1.38629 1.38629 1.38629 1.38629
2723 0.03482 4.06797 4.06797 1.46634 0.26236 1.09861 0.40547
2724 24 3.54508 0.11761 3.58965 2.90982 24 - -
2725 1.38629 1.38629 1.38629 1.38629
2726 0.03482 4.06797 4.06797 1.46634 0.26236 1.09861 0.40547
2727 25 3.18815 2.65832 3.23245 0.16343 25 - -
2728 1.38629 1.38629 1.38629 1.38629
2729 0.03482 4.06797 4.06797 1.46634 0.26236 1.09861 0.40547
2730 26 0.12967 3.47777 2.86492 3.38883 26 - -
2731 1.38629 1.38629 1.38629 1.38629
2732 0.03482 4.06797 4.06797 1.46634 0.26236 1.09861 0.40547
2733 27 3.54508 0.11761 3.58965 2.90982 27 - -
2734 1.38629 1.38629 1.38629 1.38629
2735 0.03482 4.06797 4.06797 1.46634 0.26236 1.09861 0.40547
2736 28 3.54508 0.11761 3.58965 2.90982 28 - -
2737 1.38629 1.38629 1.38629 1.38629
2738 0.03482 4.06797 4.06797 1.46634 0.26236 1.09861 0.40547
2739 29 3.54508 0.11761 3.58965 2.90982 29 - -
2740 1.38629 1.38629 1.38629 1.38629
2741 0.03482 4.06797 4.06797 1.46634 0.26236 1.09861 0.40547
2742 30 3.01439 3.68574 0.10698 3.60080 30 - -
2743 1.38629 1.38629 1.38629 1.38629
2744 0.03482 4.06797 4.06797 1.46634 0.26236 1.09861 0.40547
2745 31 3.54508 0.11761 3.58965 2.90982 31 - -
2746 1.38629 1.38629 1.38629 1.38629
2747 0.03482 4.06797 4.06797 1.46634 0.26236 1.09861 0.40547
2748 32 2.74213 1.70504 2.80382 0.36640 32 - -
2749 1.38629 1.38629 1.38629 1.38629
2750 0.03482 4.06797 4.06797 1.46634 0.26236 1.09861 0.40547
2751 33 3.01439 3.68574 0.10698 3.60080 33 - -
2752 1.38629 1.38629 1.38629 1.38629
2753 0.03482 4.06797 4.06797 1.46634 0.26236 1.09861 0.40547
2754 34 0.12967 3.47777 2.86492 3.38883 34 - -
2755 1.38629 1.38629 1.38629 1.38629
2756 0.03482 4.06797 4.06797 1.46634 0.26236 1.09861 0.40547
2757 35 0.12967 3.47777 2.86492 3.38883 35 - -
2758 1.38629 1.38629 1.38629 1.38629
2759 0.03482 4.06797 4.06797 1.46634 0.26236 1.09861 0.40547
2760 36 3.18815 2.65832 3.23245 0.16343 36 - -
2761 1.38629 1.38629 1.38629 1.38629
2762 0.03482 4.06797 4.06797 1.46634 0.26236 1.09861 0.40547
2763 37 3.18815 2.65832 3.23245 0.16343 37 - -
2764 1.38629 1.38629 1.38629 1.38629
2765 0.03482 4.06797 4.06797 1.46634 0.26236 1.09861 0.40547
2766 38 3.18815 2.65832 3.23245 0.16343 38 - -
2767 1.38629 1.38629 1.38629 1.38629
2768 0.03482 4.06797 4.06797 1.46634 0.26236 1.09861 0.40547
2769 39 0.12967 3.47777 2.86492 3.38883 39 - -
2770 1.38629 1.38629 1.38629 1.38629
2771 0.03482 4.06797 4.06797 1.46634 0.26236 1.09861 0.40547
2772 40 0.12967 3.47777 2.86492 3.38883 40 - -
2773 1.38629 1.38629 1.38629 1.38629
2774 0.03482 4.06797 4.06797 1.46634 0.26236 1.09861 0.40547
2775 41 3.01439 3.68574 0.10698 3.60080 41 - -
2776 1.38629 1.38629 1.38629 1.38629
2777 0.03482 4.06797 4.06797 1.46634 0.26236 1.09861 0.40547
2778 42 3.54508 0.11761 3.58965 2.90982 42 - -
2779 1.38629 1.38629 1.38629 1.38629
2780 0.03482 4.06797 4.06797 1.46634 0.26236 1.09861 0.40547
2781 43 0.12967 3.47777 2.86492 3.38883 43 - -
2782 1.38629 1.38629 1.38629 1.38629
2783 0.03482 4.06797 4.06797 1.46634 0.26236 1.09861 0.40547
2784 44 3.18815 2.65832 3.23245 0.16343 44 - -
2785 1.38629 1.38629 1.38629 1.38629
2786 0.03482 4.06797 4.06797 1.46634 0.26236 1.09861 0.40547
2787 45 0.12967 3.47777 2.86492 3.38883 45 - -
2788 1.38629 1.38629 1.38629 1.38629
2789 0.01756 4.05071 * 1.46634 0.26236 0.00000 *
2790 //
2791 HMMER3/b [3.0 | March 2010]
2792 NAME 4_LSU_Bacillariophyta_4_LSU_start_two_long
2793 LENG 45
2794 ALPH DNA
2795 RF no
2796 CS no
2797 MAP yes
2798 DATE Fri Jan 20 11:59:28 2012
2799 NSEQ 2
2800 EFFN 2.000000
2801 CKSUM 53972170
2802 STATS LOCAL MSV -7.5197 0.72823
2803 STATS LOCAL VITERBI -8.1408 0.72823
2804 STATS LOCAL FORWARD -3.1060 0.72823
2805 HMM A C G T
2806 m->m m->i m->d i->m i->i d->m d->d
2807 COMPO 1.19216 1.39756 1.56314 1.42812
2808 1.38629 1.38629 1.38629 1.38629
2809 0.04879 3.73767 3.73767 1.46634 0.26236 0.00000 *
2810 1 2.57915 2.25909 2.64442 0.28946 1 - -
2811 1.38629 1.38629 1.38629 1.38629
2812 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
2813 2 2.81865 0.23582 2.88868 2.35662 2 - -
2814 1.38629 1.38629 1.38629 1.38629
2815 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
2816 3 2.81865 0.23582 2.88868 2.35662 3 - -
2817 1.38629 1.38629 1.38629 1.38629
2818 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
2819 4 2.53331 3.02441 0.20344 2.88069 4 - -
2820 1.38629 1.38629 1.38629 1.38629
2821 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
2822 5 2.53331 3.02441 0.20344 2.88069 5 - -
2823 1.38629 1.38629 1.38629 1.38629
2824 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
2825 6 0.23862 2.84929 2.43386 2.70756 6 - -
2826 1.38629 1.38629 1.38629 1.38629
2827 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
2828 7 2.57915 2.25909 2.64442 0.28946 7 - -
2829 1.38629 1.38629 1.38629 1.38629
2830 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
2831 8 2.81865 0.23582 2.88868 2.35662 8 - -
2832 1.38629 1.38629 1.38629 1.38629
2833 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
2834 9 2.57915 2.25909 2.64442 0.28946 9 - -
2835 1.38629 1.38629 1.38629 1.38629
2836 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
2837 10 2.81865 0.23582 2.88868 2.35662 10 - -
2838 1.38629 1.38629 1.38629 1.38629
2839 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
2840 11 0.23862 2.84929 2.43386 2.70756 11 - -
2841 1.38629 1.38629 1.38629 1.38629
2842 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
2843 12 2.53331 3.02441 0.20344 2.88069 12 - -
2844 1.38629 1.38629 1.38629 1.38629
2845 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
2846 13 0.23862 2.84929 2.43386 2.70756 13 - -
2847 1.38629 1.38629 1.38629 1.38629
2848 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
2849 14 2.57915 2.25909 2.64442 0.28946 14 - -
2850 1.38629 1.38629 1.38629 1.38629
2851 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
2852 15 2.81865 0.23582 2.88868 2.35662 15 - -
2853 1.38629 1.38629 1.38629 1.38629
2854 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
2855 16 0.23862 2.84929 2.43386 2.70756 16 - -
2856 1.38629 1.38629 1.38629 1.38629
2857 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
2858 17 0.23862 2.84929 2.43386 2.70756 17 - -
2859 1.38629 1.38629 1.38629 1.38629
2860 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
2861 18 2.53331 3.02441 0.20344 2.88069 18 - -
2862 1.38629 1.38629 1.38629 1.38629
2863 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
2864 19 2.57915 2.25909 2.64442 0.28946 19 - -
2865 1.38629 1.38629 1.38629 1.38629
2866 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
2867 20 0.23862 2.84929 2.43386 2.70756 20 - -
2868 1.38629 1.38629 1.38629 1.38629
2869 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
2870 21 0.23862 2.84929 2.43386 2.70756 21 - -
2871 1.38629 1.38629 1.38629 1.38629
2872 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
2873 22 2.53331 3.02441 0.20344 2.88069 22 - -
2874 1.38629 1.38629 1.38629 1.38629
2875 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
2876 23 0.23862 2.84929 2.43386 2.70756 23 - -
2877 1.38629 1.38629 1.38629 1.38629
2878 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
2879 24 2.57915 2.25909 2.64442 0.28946 24 - -
2880 1.38629 1.38629 1.38629 1.38629
2881 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
2882 25 2.57915 2.25909 2.64442 0.28946 25 - -
2883 1.38629 1.38629 1.38629 1.38629
2884 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
2885 26 0.23862 2.84929 2.43386 2.70756 26 - -
2886 1.38629 1.38629 1.38629 1.38629
2887 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
2888 27 2.81865 0.23582 2.88868 2.35662 27 - -
2889 1.38629 1.38629 1.38629 1.38629
2890 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
2891 28 2.81865 0.23582 2.88868 2.35662 28 - -
2892 1.38629 1.38629 1.38629 1.38629
2893 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
2894 29 2.81865 0.23582 2.88868 2.35662 29 - -
2895 1.38629 1.38629 1.38629 1.38629
2896 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
2897 30 2.53331 3.02441 0.20344 2.88069 30 - -
2898 1.38629 1.38629 1.38629 1.38629
2899 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
2900 31 2.81865 0.23582 2.88868 2.35662 31 - -
2901 1.38629 1.38629 1.38629 1.38629
2902 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
2903 32 2.81865 0.23582 2.88868 2.35662 32 - -
2904 1.38629 1.38629 1.38629 1.38629
2905 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
2906 33 2.53331 3.02441 0.20344 2.88069 33 - -
2907 1.38629 1.38629 1.38629 1.38629
2908 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
2909 34 0.23862 2.84929 2.43386 2.70756 34 - -
2910 1.38629 1.38629 1.38629 1.38629
2911 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
2912 35 0.23862 2.84929 2.43386 2.70756 35 - -
2913 1.38629 1.38629 1.38629 1.38629
2914 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
2915 36 2.57915 2.25909 2.64442 0.28946 36 - -
2916 1.38629 1.38629 1.38629 1.38629
2917 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
2918 37 2.57915 2.25909 2.64442 0.28946 37 - -
2919 1.38629 1.38629 1.38629 1.38629
2920 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
2921 38 2.57915 2.25909 2.64442 0.28946 38 - -
2922 1.38629 1.38629 1.38629 1.38629
2923 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
2924 39 0.23862 2.84929 2.43386 2.70756 39 - -
2925 1.38629 1.38629 1.38629 1.38629
2926 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
2927 40 0.23862 2.84929 2.43386 2.70756 40 - -
2928 1.38629 1.38629 1.38629 1.38629
2929 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
2930 41 2.53331 3.02441 0.20344 2.88069 41 - -
2931 1.38629 1.38629 1.38629 1.38629
2932 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
2933 42 2.81865 0.23582 2.88868 2.35662 42 - -
2934 1.38629 1.38629 1.38629 1.38629
2935 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
2936 43 0.23862 2.84929 2.43386 2.70756 43 - -
2937 1.38629 1.38629 1.38629 1.38629
2938 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
2939 44 2.57915 2.25909 2.64442 0.28946 44 - -
2940 1.38629 1.38629 1.38629 1.38629
2941 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
2942 45 0.23862 2.84929 2.43386 2.70756 45 - -
2943 1.38629 1.38629 1.38629 1.38629
2944 0.02469 3.71357 * 1.46634 0.26236 0.00000 *
2945 //
2946 HMMER3/b [3.0 | March 2010]
2947 NAME 1_SSU_Bacillariophyta_1_SSU_end_long
2948 LENG 45
2949 ALPH DNA
2950 RF no
2951 CS no
2952 MAP yes
2953 DATE Sat Oct 1 01:59:06 2011
2954 NSEQ 44
2955 EFFN 3.225342
2956 CKSUM 3533706599
2957 STATS LOCAL MSV -8.0048 0.71933
2958 STATS LOCAL VITERBI -7.6830 0.71933
2959 STATS LOCAL FORWARD -4.1089 0.71933
2960 HMM A C G T
2961 m->m m->i m->d i->m i->i d->m d->d
2962 COMPO 1.27189 1.62644 1.24659 1.44567
2963 1.38629 1.38629 1.38629 1.38629
2964 0.03756 3.99367 3.99367 1.46634 0.26236 0.00000 *
2965 1 0.14615 3.34859 2.78130 3.24727 1 - -
2966 1.38629 1.38629 1.38629 1.38629
2967 0.03756 3.99367 3.99367 1.46634 0.26236 1.09861 0.40547
2968 2 2.92530 3.55551 0.12075 3.45686 2 - -
2969 1.38629 1.38629 1.38629 1.38629
2970 0.03756 3.99367 3.99367 1.46634 0.26236 1.09861 0.40547
2971 3 3.05675 2.57485 3.10612 0.18390 3 - -
2972 1.38629 1.38629 1.38629 1.38629
2973 0.03756 3.99367 3.99367 1.46634 0.26236 1.09861 0.40547
2974 4 3.39657 0.13465 3.44756 2.80232 4 - -
2975 1.38629 1.38629 1.38629 1.38629
2976 0.03756 3.99367 3.99367 1.46634 0.26236 1.09861 0.40547
2977 5 2.92530 3.55551 0.12075 3.45686 5 - -
2978 1.38629 1.38629 1.38629 1.38629
2979 0.03756 3.99367 3.99367 1.46634 0.26236 1.09861 0.40547
2980 6 3.05675 2.57485 3.10612 0.18390 6 - -
2981 1.38629 1.38629 1.38629 1.38629
2982 0.03756 3.99367 3.99367 1.46634 0.26236 1.09861 0.40547
2983 7 0.14615 3.34859 2.78130 3.24727 7 - -
2984 1.38629 1.38629 1.38629 1.38629
2985 0.03756 3.99367 3.99367 1.46634 0.26236 1.09861 0.40547
2986 8 0.14615 3.34859 2.78130 3.24727 8 - -
2987 1.38629 1.38629 1.38629 1.38629
2988 0.03756 3.99367 3.99367 1.46634 0.26236 1.09861 0.40547
2989 9 3.39657 0.13465 3.44756 2.80232 9 - -
2990 1.38629 1.38629 1.38629 1.38629
2991 0.03756 3.99367 3.99367 1.46634 0.26236 1.09861 0.40547
2992 10 0.14615 3.34859 2.78130 3.24727 10 - -
2993 1.38629 1.38629 1.38629 1.38629
2994 0.03756 3.99367 3.99367 1.46634 0.26236 1.09861 0.40547
2995 11 0.14615 3.34859 2.78130 3.24727 11 - -
2996 1.38629 1.38629 1.38629 1.38629
2997 0.03756 3.99367 3.99367 1.46634 0.26236 1.09861 0.40547
2998 12 2.92530 3.55551 0.12075 3.45686 12 - -
2999 1.38629 1.38629 1.38629 1.38629
3000 0.03756 3.99367 3.99367 1.46634 0.26236 1.09861 0.40547
3001 13 2.92530 3.55551 0.12075 3.45686 13 - -
3002 1.38629 1.38629 1.38629 1.38629
3003 0.03756 3.99367 3.99367 1.46634 0.26236 1.09861 0.40547
3004 14 3.05675 2.57485 3.10612 0.18390 14 - -
3005 1.38629 1.38629 1.38629 1.38629
3006 0.03756 3.99367 3.99367 1.46634 0.26236 1.09861 0.40547
3007 15 3.05675 2.57485 3.10612 0.18390 15 - -
3008 1.38629 1.38629 1.38629 1.38629
3009 0.03756 3.99367 3.99367 1.46634 0.26236 1.09861 0.40547
3010 16 3.05675 2.57485 3.10612 0.18390 16 - -
3011 1.38629 1.38629 1.38629 1.38629
3012 0.03756 3.99367 3.99367 1.46634 0.26236 1.09861 0.40547
3013 17 3.39657 0.13465 3.44756 2.80232 17 - -
3014 1.38629 1.38629 1.38629 1.38629
3015 0.03756 3.99367 3.99367 1.46634 0.26236 1.09861 0.40547
3016 18 3.39657 0.13465 3.44756 2.80232 18 - -
3017 1.38629 1.38629 1.38629 1.38629
3018 0.03756 3.99367 3.99367 1.46634 0.26236 1.09861 0.40547
3019 19 2.92530 3.55551 0.12075 3.45686 19 - -
3020 1.38629 1.38629 1.38629 1.38629
3021 0.03756 3.99367 3.99367 1.46634 0.26236 1.09861 0.40547
3022 20 3.05675 2.57485 3.10612 0.18390 20 - -
3023 1.38629 1.38629 1.38629 1.38629
3024 0.03756 3.99367 3.99367 1.46634 0.26236 1.09861 0.40547
3025 21 0.14615 3.34859 2.78130 3.24727 21 - -
3026 1.38629 1.38629 1.38629 1.38629
3027 0.03756 3.99367 3.99367 1.46634 0.26236 1.09861 0.40547
3028 22 2.92530 3.55551 0.12075 3.45686 22 - -
3029 1.38629 1.38629 1.38629 1.38629
3030 0.03756 3.99367 3.99367 1.46634 0.26236 1.09861 0.40547
3031 23 2.92530 3.55551 0.12075 3.45686 23 - -
3032 1.38629 1.38629 1.38629 1.38629
3033 0.03756 3.99367 3.99367 1.46634 0.26236 1.09861 0.40547
3034 24 3.05675 2.57485 3.10612 0.18390 24 - -
3035 1.38629 1.38629 1.38629 1.38629
3036 0.03756 3.99367 3.99367 1.46634 0.26236 1.09861 0.40547
3037 25 2.92530 3.55551 0.12075 3.45686 25 - -
3038 1.38629 1.38629 1.38629 1.38629
3039 0.03756 3.99367 3.99367 1.46634 0.26236 1.09861 0.40547
3040 26 0.14615 3.34859 2.78130 3.24727 26 - -
3041 1.38629 1.38629 1.38629 1.38629
3042 0.03756 3.99367 3.99367 1.46634 0.26236 1.09861 0.40547
3043 27 0.14615 3.34859 2.78130 3.24727 27 - -
3044 1.38629 1.38629 1.38629 1.38629
3045 0.03756 3.99367 3.99367 1.46634 0.26236 1.09861 0.40547
3046 28 3.39657 0.13465 3.44756 2.80232 28 - -
3047 1.38629 1.38629 1.38629 1.38629
3048 0.03756 3.99367 3.99367 1.46634 0.26236 1.09861 0.40547
3049 29 3.39657 0.13465 3.44756 2.80232 29 - -
3050 1.38629 1.38629 1.38629 1.38629
3051 0.03756 3.99367 3.99367 1.46634 0.26236 1.09861 0.40547
3052 30 3.05675 2.57485 3.10612 0.18390 30 - -
3053 1.38629 1.38629 1.38629 1.38629
3054 0.03756 3.99367 3.99367 1.46634 0.26236 1.09861 0.40547
3055 31 2.92530 3.55551 0.12075 3.45686 31 - -
3056 1.38629 1.38629 1.38629 1.38629
3057 0.03756 3.99367 3.99367 1.46634 0.26236 1.09861 0.40547
3058 32 3.39657 0.13465 3.44756 2.80232 32 - -
3059 1.38629 1.38629 1.38629 1.38629
3060 0.03756 3.99367 3.99367 1.46634 0.26236 1.09861 0.40547
3061 33 2.92530 3.55551 0.12075 3.45686 33 - -
3062 1.38629 1.38629 1.38629 1.38629
3063 0.03756 3.99367 3.99367 1.46634 0.26236 1.09861 0.40547
3064 34 2.92530 3.55551 0.12075 3.45686 34 - -
3065 1.38629 1.38629 1.38629 1.38629
3066 0.03756 3.99367 3.99367 1.46634 0.26236 1.09861 0.40547
3067 35 0.14615 3.34859 2.78130 3.24727 35 - -
3068 1.38629 1.38629 1.38629 1.38629
3069 0.03756 3.99367 3.99367 1.46634 0.26236 1.09861 0.40547
3070 36 0.14615 3.34859 2.78130 3.24727 36 - -
3071 1.38629 1.38629 1.38629 1.38629
3072 0.03756 3.99367 3.99367 1.46634 0.26236 1.09861 0.40547
3073 37 2.92530 3.55551 0.12075 3.45686 37 - -
3074 1.38629 1.38629 1.38629 1.38629
3075 0.03756 3.99367 3.99367 1.46634 0.26236 1.09861 0.40547
3076 38 2.92530 3.55551 0.12075 3.45686 38 - -
3077 1.38629 1.38629 1.38629 1.38629
3078 0.03756 3.99367 3.99367 1.46634 0.26236 1.09861 0.40547
3079 39 0.14615 3.34859 2.78130 3.24727 39 - -
3080 1.38629 1.38629 1.38629 1.38629
3081 0.03756 3.99367 3.99367 1.46634 0.26236 1.09861 0.40547
3082 40 3.05675 2.57485 3.10612 0.18390 40 - -
3083 1.38629 1.38629 1.38629 1.38629
3084 0.03756 3.99367 3.99367 1.46634 0.26236 1.09861 0.40547
3085 41 3.39657 0.13465 3.44756 2.80232 41 - -
3086 1.38629 1.38629 1.38629 1.38629
3087 0.03756 3.99367 3.99367 1.46634 0.26236 1.09861 0.40547
3088 42 0.14615 3.34859 2.78130 3.24727 42 - -
3089 1.38629 1.38629 1.38629 1.38629
3090 0.03756 3.99367 3.99367 1.46634 0.26236 1.09861 0.40547
3091 43 3.05675 2.57485 3.10612 0.18390 43 - -
3092 1.38629 1.38629 1.38629 1.38629
3093 0.03756 3.99367 3.99367 1.46634 0.26236 1.09861 0.40547
3094 44 3.05675 2.57485 3.10612 0.18390 44 - -
3095 1.38629 1.38629 1.38629 1.38629
3096 0.03756 3.99367 3.99367 1.46634 0.26236 1.09861 0.40547
3097 45 0.14615 3.34859 2.78130 3.24727 45 - -
3098 1.38629 1.38629 1.38629 1.38629
3099 0.01896 3.97506 * 1.46634 0.26236 0.00000 *
3100 //