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comparison ITSx_db/HMMs/O.hmm @ 0:57e76d405a97 draft default tip

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-1:000000000000 0:57e76d405a97
1 HMMER3/b [3.0 | March 2010]
2 NAME 3_End_Oomycota_58S_end_eight_long
3 LENG 45
4 ALPH DNA
5 RF no
6 CS no
7 MAP yes
8 DATE Mon Jan 23 23:03:14 2012
9 NSEQ 2983
10 EFFN 3.376790
11 CKSUM 630809808
12 STATS LOCAL MSV -7.3235 0.71932
13 STATS LOCAL VITERBI -7.7268 0.71932
14 STATS LOCAL FORWARD -3.9994 0.71932
15 HMM A C G T
16 m->m m->i m->d i->m i->i d->m d->d
17 COMPO 1.71234 1.37658 1.27028 1.25049
18 1.38629 1.38629 1.38629 1.38629
19 0.03652 4.02119 4.02119 1.46634 0.26236 0.00000 *
20 1 3.45287 0.12788 3.50149 2.84336 1 - -
21 1.38629 1.38629 1.38629 1.38629
22 0.03652 4.02119 4.02119 1.46634 0.26236 1.09861 0.40547
23 2 0.13965 3.39742 2.81306 3.30071 2 - -
24 1.38629 1.38629 1.38629 1.38629
25 0.03652 4.02119 4.02119 1.46634 0.26236 1.09861 0.40547
26 3 3.45287 0.12788 3.50149 2.84336 3 - -
27 1.38629 1.38629 1.38629 1.38629
28 0.03652 4.02119 4.02119 1.46634 0.26236 1.09861 0.40547
29 4 3.10596 2.60617 3.15345 0.17590 4 - -
30 1.38629 1.38629 1.38629 1.38629
31 0.03652 4.02119 4.02119 1.46634 0.26236 1.09861 0.40547
32 5 3.07064 2.51740 3.11930 0.18784 5 - -
33 1.38629 1.38629 1.38629 1.38629
34 0.03652 4.02119 4.02119 1.46634 0.26236 1.09861 0.40547
35 6 3.40266 0.13843 3.45273 2.74368 6 - -
36 1.38629 1.38629 1.38629 1.38629
37 0.03652 4.02119 4.02119 1.46634 0.26236 1.09861 0.40547
38 7 3.45287 0.12788 3.50149 2.84336 7 - -
39 1.38629 1.38629 1.38629 1.38629
40 0.03652 4.02119 4.02119 1.46634 0.26236 1.09861 0.40547
41 8 2.95946 3.60514 0.11528 3.51162 8 - -
42 1.38629 1.38629 1.38629 1.38629
43 0.03652 4.02119 4.02119 1.46634 0.26236 1.09861 0.40547
44 9 2.95946 3.60514 0.11528 3.51162 9 - -
45 1.38629 1.38629 1.38629 1.38629
46 0.03652 4.02119 4.02119 1.46634 0.26236 1.09861 0.40547
47 10 2.95946 3.60514 0.11528 3.51162 10 - -
48 1.38629 1.38629 1.38629 1.38629
49 0.03652 4.02119 4.02119 1.46634 0.26236 1.09861 0.40547
50 11 3.07576 2.52995 3.12424 0.18607 11 - -
51 1.38629 1.38629 1.38629 1.38629
52 0.03652 4.02119 4.02119 1.46634 0.26236 1.09861 0.40547
53 12 3.10596 2.60617 3.15345 0.17590 12 - -
54 1.38629 1.38629 1.38629 1.38629
55 0.03652 4.02119 4.02119 1.46634 0.26236 1.09861 0.40547
56 13 0.13965 3.39742 2.81306 3.30071 13 - -
57 1.38629 1.38629 1.38629 1.38629
58 0.03652 4.02119 4.02119 1.46634 0.26236 1.09861 0.40547
59 14 2.95946 3.60514 0.11528 3.51162 14 - -
60 1.38629 1.38629 1.38629 1.38629
61 0.03652 4.02119 4.02119 1.46634 0.26236 1.09861 0.40547
62 15 3.01261 2.38100 3.06343 0.20868 15 - -
63 1.38629 1.38629 1.38629 1.38629
64 0.03652 4.02119 4.02119 1.46634 0.26236 1.09861 0.40547
65 16 3.45287 0.12788 3.50149 2.84336 16 - -
66 1.38629 1.38629 1.38629 1.38629
67 0.03652 4.02119 4.02119 1.46634 0.26236 1.09861 0.40547
68 17 3.45287 0.12788 3.50149 2.84336 17 - -
69 1.38629 1.38629 1.38629 1.38629
70 0.03652 4.02119 4.02119 1.46634 0.26236 1.09861 0.40547
71 18 3.10596 2.60617 3.15345 0.17590 18 - -
72 1.38629 1.38629 1.38629 1.38629
73 0.03652 4.02119 4.02119 1.46634 0.26236 1.09861 0.40547
74 19 2.95946 3.60514 0.11528 3.51162 19 - -
75 1.38629 1.38629 1.38629 1.38629
76 0.03652 4.02119 4.02119 1.46634 0.26236 1.09861 0.40547
77 20 2.95946 3.60514 0.11528 3.51162 20 - -
78 1.38629 1.38629 1.38629 1.38629
79 0.03652 4.02119 4.02119 1.46634 0.26236 1.09861 0.40547
80 21 1.77028 2.90399 0.33921 2.77137 21 - -
81 1.38629 1.38629 1.38629 1.38629
82 0.03652 4.02119 4.02119 1.46634 0.26236 1.09861 0.40547
83 22 0.13965 3.39742 2.81306 3.30071 22 - -
84 1.38629 1.38629 1.38629 1.38629
85 0.03652 4.02119 4.02119 1.46634 0.26236 1.09861 0.40547
86 23 2.95946 3.60514 0.11528 3.51162 23 - -
87 1.38629 1.38629 1.38629 1.38629
88 0.03652 4.02119 4.02119 1.46634 0.26236 1.09861 0.40547
89 24 3.10596 2.60617 3.15345 0.17590 24 - -
90 1.38629 1.38629 1.38629 1.38629
91 0.03652 4.02119 4.02119 1.46634 0.26236 1.09861 0.40547
92 25 0.13965 3.39742 2.81306 3.30071 25 - -
93 1.38629 1.38629 1.38629 1.38629
94 0.03652 4.02119 4.02119 1.46634 0.26236 1.09861 0.40547
95 26 3.10596 2.60617 3.15345 0.17590 26 - -
96 1.38629 1.38629 1.38629 1.38629
97 0.03652 4.02119 4.02119 1.46634 0.26236 1.09861 0.40547
98 27 2.95946 3.60514 0.11528 3.51162 27 - -
99 1.38629 1.38629 1.38629 1.38629
100 0.03652 4.02119 4.02119 1.46634 0.26236 1.09861 0.40547
101 28 3.45287 0.12788 3.50149 2.84336 28 - -
102 1.38629 1.38629 1.38629 1.38629
103 0.03652 4.02119 4.02119 1.46634 0.26236 1.09861 0.40547
104 29 3.45287 0.12788 3.50149 2.84336 29 - -
105 1.38629 1.38629 1.38629 1.38629
106 0.03652 4.02119 4.02119 1.46634 0.26236 1.09861 0.40547
107 30 3.10596 2.60617 3.15345 0.17590 30 - -
108 1.38629 1.38629 1.38629 1.38629
109 0.03652 4.02119 4.02119 1.46634 0.26236 1.09861 0.40547
110 31 2.95946 3.60514 0.11528 3.51162 31 - -
111 1.38629 1.38629 1.38629 1.38629
112 0.03652 4.02119 4.02119 1.46634 0.26236 1.09861 0.40547
113 32 3.10596 2.60617 3.15345 0.17590 32 - -
114 1.38629 1.38629 1.38629 1.38629
115 0.03652 4.02119 4.02119 1.46634 0.26236 1.09861 0.40547
116 33 0.13965 3.39742 2.81306 3.30071 33 - -
117 1.38629 1.38629 1.38629 1.38629
118 0.03652 4.02119 4.02119 1.46634 0.26236 1.09861 0.40547
119 34 3.10596 2.60617 3.15345 0.17590 34 - -
120 1.38629 1.38629 1.38629 1.38629
121 0.03652 4.02119 4.02119 1.46634 0.26236 1.09861 0.40547
122 35 3.45287 0.12788 3.50149 2.84336 35 - -
123 1.38629 1.38629 1.38629 1.38629
124 0.03652 4.02119 4.02119 1.46634 0.26236 1.09861 0.40547
125 36 0.13965 3.39742 2.81306 3.30071 36 - -
126 1.38629 1.38629 1.38629 1.38629
127 0.03652 4.02119 4.02119 1.46634 0.26236 1.09861 0.40547
128 37 2.95946 3.60514 0.11528 3.51162 37 - -
129 1.38629 1.38629 1.38629 1.38629
130 0.03652 4.02119 4.02119 1.46634 0.26236 1.09861 0.40547
131 38 3.10596 2.60617 3.15345 0.17590 38 - -
132 1.38629 1.38629 1.38629 1.38629
133 0.03652 4.02119 4.02119 1.46634 0.26236 1.09861 0.40547
134 39 2.95946 3.60514 0.11528 3.51162 39 - -
135 1.38629 1.38629 1.38629 1.38629
136 0.03652 4.02119 4.02119 1.46634 0.26236 1.09861 0.40547
137 40 3.10596 2.60617 3.15345 0.17590 40 - -
138 1.38629 1.38629 1.38629 1.38629
139 0.03652 4.02119 4.02119 1.46634 0.26236 1.09861 0.40547
140 41 3.45287 0.12788 3.50149 2.84336 41 - -
141 1.38629 1.38629 1.38629 1.38629
142 0.03652 4.02119 4.02119 1.46634 0.26236 1.09861 0.40547
143 42 3.40764 0.13736 3.45755 2.75327 42 - -
144 1.38629 1.38629 1.38629 1.38629
145 0.03652 4.02119 4.02119 1.46634 0.26236 1.09861 0.40547
146 43 2.95946 3.60514 0.11528 3.51162 43 - -
147 1.38629 1.38629 1.38629 1.38629
148 0.03652 4.02119 4.02119 1.46634 0.26236 1.09861 0.40547
149 44 3.10596 2.60617 3.15345 0.17590 44 - -
150 1.38629 1.38629 1.38629 1.38629
151 0.03652 4.02119 4.02119 1.46634 0.26236 1.09861 0.40547
152 45 0.13965 3.39742 2.81306 3.30071 45 - -
153 1.38629 1.38629 1.38629 1.38629
154 0.01843 4.00310 * 1.46634 0.26236 0.00000 *
155 //
156 HMMER3/b [3.0 | March 2010]
157 NAME 3_End_Oomycota_58S_end_eighteen_long
158 LENG 45
159 ALPH DNA
160 RF no
161 CS no
162 MAP yes
163 DATE Mon Jan 23 23:05:17 2012
164 NSEQ 66
165 EFFN 3.387817
166 CKSUM 3936920601
167 STATS LOCAL MSV -7.3341 0.71931
168 STATS LOCAL VITERBI -7.7613 0.71931
169 STATS LOCAL FORWARD -4.0489 0.71931
170 HMM A C G T
171 m->m m->i m->d i->m i->i d->m d->d
172 COMPO 1.72377 1.45753 1.31845 1.13554
173 1.38629 1.38629 1.38629 1.38629
174 0.03645 4.02317 4.02317 1.46634 0.26236 0.00000 *
175 1 3.45687 0.12741 3.50531 2.84626 1 - -
176 1.38629 1.38629 1.38629 1.38629
177 0.03645 4.02317 4.02317 1.46634 0.26236 1.09861 0.40547
178 2 0.13920 3.40089 2.81531 3.30452 2 - -
179 1.38629 1.38629 1.38629 1.38629
180 0.03645 4.02317 4.02317 1.46634 0.26236 1.09861 0.40547
181 3 3.45687 0.12741 3.50531 2.84626 3 - -
182 1.38629 1.38629 1.38629 1.38629
183 0.03645 4.02317 4.02317 1.46634 0.26236 1.09861 0.40547
184 4 3.10948 2.60841 3.15684 0.17535 4 - -
185 1.38629 1.38629 1.38629 1.38629
186 0.03645 4.02317 4.02317 1.46634 0.26236 1.09861 0.40547
187 5 3.10948 2.60841 3.15684 0.17535 5 - -
188 1.38629 1.38629 1.38629 1.38629
189 0.03645 4.02317 4.02317 1.46634 0.26236 1.09861 0.40547
190 6 3.10948 2.60841 3.15684 0.17535 6 - -
191 1.38629 1.38629 1.38629 1.38629
192 0.03645 4.02317 4.02317 1.46634 0.26236 1.09861 0.40547
193 7 3.45687 0.12741 3.50531 2.84626 7 - -
194 1.38629 1.38629 1.38629 1.38629
195 0.03645 4.02317 4.02317 1.46634 0.26236 1.09861 0.40547
196 8 2.96186 3.60865 0.11490 3.51549 8 - -
197 1.38629 1.38629 1.38629 1.38629
198 0.03645 4.02317 4.02317 1.46634 0.26236 1.09861 0.40547
199 9 2.96186 3.60865 0.11490 3.51549 9 - -
200 1.38629 1.38629 1.38629 1.38629
201 0.03645 4.02317 4.02317 1.46634 0.26236 1.09861 0.40547
202 10 2.96186 3.60865 0.11490 3.51549 10 - -
203 1.38629 1.38629 1.38629 1.38629
204 0.03645 4.02317 4.02317 1.46634 0.26236 1.09861 0.40547
205 11 3.10948 2.60841 3.15684 0.17535 11 - -
206 1.38629 1.38629 1.38629 1.38629
207 0.03645 4.02317 4.02317 1.46634 0.26236 1.09861 0.40547
208 12 3.10948 2.60841 3.15684 0.17535 12 - -
209 1.38629 1.38629 1.38629 1.38629
210 0.03645 4.02317 4.02317 1.46634 0.26236 1.09861 0.40547
211 13 2.85130 0.31564 2.91699 1.84004 13 - -
212 1.38629 1.38629 1.38629 1.38629
213 0.03645 4.02317 4.02317 1.46634 0.26236 1.09861 0.40547
214 14 3.10948 2.60841 3.15684 0.17535 14 - -
215 1.38629 1.38629 1.38629 1.38629
216 0.03645 4.02317 4.02317 1.46634 0.26236 1.09861 0.40547
217 15 2.96186 3.60865 0.11490 3.51549 15 - -
218 1.38629 1.38629 1.38629 1.38629
219 0.03645 4.02317 4.02317 1.46634 0.26236 1.09861 0.40547
220 16 3.45687 0.12741 3.50531 2.84626 16 - -
221 1.38629 1.38629 1.38629 1.38629
222 0.03645 4.02317 4.02317 1.46634 0.26236 1.09861 0.40547
223 17 3.45687 0.12741 3.50531 2.84626 17 - -
224 1.38629 1.38629 1.38629 1.38629
225 0.03645 4.02317 4.02317 1.46634 0.26236 1.09861 0.40547
226 18 3.10948 2.60841 3.15684 0.17535 18 - -
227 1.38629 1.38629 1.38629 1.38629
228 0.03645 4.02317 4.02317 1.46634 0.26236 1.09861 0.40547
229 19 2.96186 3.60865 0.11490 3.51549 19 - -
230 1.38629 1.38629 1.38629 1.38629
231 0.03645 4.02317 4.02317 1.46634 0.26236 1.09861 0.40547
232 20 2.96186 3.60865 0.11490 3.51549 20 - -
233 1.38629 1.38629 1.38629 1.38629
234 0.03645 4.02317 4.02317 1.46634 0.26236 1.09861 0.40547
235 21 0.13920 3.40089 2.81531 3.30452 21 - -
236 1.38629 1.38629 1.38629 1.38629
237 0.03645 4.02317 4.02317 1.46634 0.26236 1.09861 0.40547
238 22 0.13920 3.40089 2.81531 3.30452 22 - -
239 1.38629 1.38629 1.38629 1.38629
240 0.03645 4.02317 4.02317 1.46634 0.26236 1.09861 0.40547
241 23 2.96186 3.60865 0.11490 3.51549 23 - -
242 1.38629 1.38629 1.38629 1.38629
243 0.03645 4.02317 4.02317 1.46634 0.26236 1.09861 0.40547
244 24 3.10948 2.60841 3.15684 0.17535 24 - -
245 1.38629 1.38629 1.38629 1.38629
246 0.03645 4.02317 4.02317 1.46634 0.26236 1.09861 0.40547
247 25 0.13920 3.40089 2.81531 3.30452 25 - -
248 1.38629 1.38629 1.38629 1.38629
249 0.03645 4.02317 4.02317 1.46634 0.26236 1.09861 0.40547
250 26 3.10948 2.60841 3.15684 0.17535 26 - -
251 1.38629 1.38629 1.38629 1.38629
252 0.03645 4.02317 4.02317 1.46634 0.26236 1.09861 0.40547
253 27 2.96186 3.60865 0.11490 3.51549 27 - -
254 1.38629 1.38629 1.38629 1.38629
255 0.03645 4.02317 4.02317 1.46634 0.26236 1.09861 0.40547
256 28 3.10948 2.60841 3.15684 0.17535 28 - -
257 1.38629 1.38629 1.38629 1.38629
258 0.03645 4.02317 4.02317 1.46634 0.26236 1.09861 0.40547
259 29 3.45687 0.12741 3.50531 2.84626 29 - -
260 1.38629 1.38629 1.38629 1.38629
261 0.03645 4.02317 4.02317 1.46634 0.26236 1.09861 0.40547
262 30 3.10948 2.60841 3.15684 0.17535 30 - -
263 1.38629 1.38629 1.38629 1.38629
264 0.03645 4.02317 4.02317 1.46634 0.26236 1.09861 0.40547
265 31 2.96186 3.60865 0.11490 3.51549 31 - -
266 1.38629 1.38629 1.38629 1.38629
267 0.03645 4.02317 4.02317 1.46634 0.26236 1.09861 0.40547
268 32 3.10948 2.60841 3.15684 0.17535 32 - -
269 1.38629 1.38629 1.38629 1.38629
270 0.03645 4.02317 4.02317 1.46634 0.26236 1.09861 0.40547
271 33 0.13920 3.40089 2.81531 3.30452 33 - -
272 1.38629 1.38629 1.38629 1.38629
273 0.03645 4.02317 4.02317 1.46634 0.26236 1.09861 0.40547
274 34 3.10948 2.60841 3.15684 0.17535 34 - -
275 1.38629 1.38629 1.38629 1.38629
276 0.03645 4.02317 4.02317 1.46634 0.26236 1.09861 0.40547
277 35 3.45687 0.12741 3.50531 2.84626 35 - -
278 1.38629 1.38629 1.38629 1.38629
279 0.03645 4.02317 4.02317 1.46634 0.26236 1.09861 0.40547
280 36 0.13920 3.40089 2.81531 3.30452 36 - -
281 1.38629 1.38629 1.38629 1.38629
282 0.03645 4.02317 4.02317 1.46634 0.26236 1.09861 0.40547
283 37 2.96186 3.60865 0.11490 3.51549 37 - -
284 1.38629 1.38629 1.38629 1.38629
285 0.03645 4.02317 4.02317 1.46634 0.26236 1.09861 0.40547
286 38 3.10948 2.60841 3.15684 0.17535 38 - -
287 1.38629 1.38629 1.38629 1.38629
288 0.03645 4.02317 4.02317 1.46634 0.26236 1.09861 0.40547
289 39 2.96186 3.60865 0.11490 3.51549 39 - -
290 1.38629 1.38629 1.38629 1.38629
291 0.03645 4.02317 4.02317 1.46634 0.26236 1.09861 0.40547
292 40 3.10948 2.60841 3.15684 0.17535 40 - -
293 1.38629 1.38629 1.38629 1.38629
294 0.03645 4.02317 4.02317 1.46634 0.26236 1.09861 0.40547
295 41 3.45687 0.12741 3.50531 2.84626 41 - -
296 1.38629 1.38629 1.38629 1.38629
297 0.03645 4.02317 4.02317 1.46634 0.26236 1.09861 0.40547
298 42 3.45687 0.12741 3.50531 2.84626 42 - -
299 1.38629 1.38629 1.38629 1.38629
300 0.03645 4.02317 4.02317 1.46634 0.26236 1.09861 0.40547
301 43 2.96186 3.60865 0.11490 3.51549 43 - -
302 1.38629 1.38629 1.38629 1.38629
303 0.03645 4.02317 4.02317 1.46634 0.26236 1.09861 0.40547
304 44 3.10948 2.60841 3.15684 0.17535 44 - -
305 1.38629 1.38629 1.38629 1.38629
306 0.03645 4.02317 4.02317 1.46634 0.26236 1.09861 0.40547
307 45 0.13920 3.40089 2.81531 3.30452 45 - -
308 1.38629 1.38629 1.38629 1.38629
309 0.01839 4.00512 * 1.46634 0.26236 0.00000 *
310 //
311 HMMER3/b [3.0 | March 2010]
312 NAME 3_End_Oomycota_58S_end_eleven_long
313 LENG 45
314 ALPH DNA
315 RF no
316 CS no
317 MAP yes
318 DATE Mon Jan 23 23:03:45 2012
319 NSEQ 5
320 EFFN 3.286133
321 CKSUM 3431982012
322 STATS LOCAL MSV -8.0387 0.71931
323 STATS LOCAL VITERBI -7.7022 0.71931
324 STATS LOCAL FORWARD -3.9965 0.71931
325 HMM A C G T
326 m->m m->i m->d i->m i->i d->m d->d
327 COMPO 1.72267 1.44764 1.25731 1.19776
328 1.38629 1.38629 1.38629 1.38629
329 0.03714 4.00481 4.00481 1.46634 0.26236 0.00000 *
330 1 3.41954 0.13184 3.46957 2.81911 1 - -
331 1.38629 1.38629 1.38629 1.38629
332 0.03714 4.00481 4.00481 1.46634 0.26236 1.09861 0.40547
333 2 0.14346 3.36849 2.79427 3.26904 2 - -
334 1.38629 1.38629 1.38629 1.38629
335 0.03714 4.00481 4.00481 1.46634 0.26236 1.09861 0.40547
336 3 3.41954 0.13184 3.46957 2.81911 3 - -
337 1.38629 1.38629 1.38629 1.38629
338 0.03714 4.00481 4.00481 1.46634 0.26236 1.09861 0.40547
339 4 3.07674 2.58759 3.12535 0.18060 4 - -
340 1.38629 1.38629 1.38629 1.38629
341 0.03714 4.00481 4.00481 1.46634 0.26236 1.09861 0.40547
342 5 3.07674 2.58759 3.12535 0.18060 5 - -
343 1.38629 1.38629 1.38629 1.38629
344 0.03714 4.00481 4.00481 1.46634 0.26236 1.09861 0.40547
345 6 3.41954 0.13184 3.46957 2.81911 6 - -
346 1.38629 1.38629 1.38629 1.38629
347 0.03714 4.00481 4.00481 1.46634 0.26236 1.09861 0.40547
348 7 3.41954 0.13184 3.46957 2.81911 7 - -
349 1.38629 1.38629 1.38629 1.38629
350 0.03714 4.00481 4.00481 1.46634 0.26236 1.09861 0.40547
351 8 2.93930 3.57580 0.11848 3.47923 8 - -
352 1.38629 1.38629 1.38629 1.38629
353 0.03714 4.00481 4.00481 1.46634 0.26236 1.09861 0.40547
354 9 2.93930 3.57580 0.11848 3.47923 9 - -
355 1.38629 1.38629 1.38629 1.38629
356 0.03714 4.00481 4.00481 1.46634 0.26236 1.09861 0.40547
357 10 2.93930 3.57580 0.11848 3.47923 10 - -
358 1.38629 1.38629 1.38629 1.38629
359 0.03714 4.00481 4.00481 1.46634 0.26236 1.09861 0.40547
360 11 3.07674 2.58759 3.12535 0.18060 11 - -
361 1.38629 1.38629 1.38629 1.38629
362 0.03714 4.00481 4.00481 1.46634 0.26236 1.09861 0.40547
363 12 3.07674 2.58759 3.12535 0.18060 12 - -
364 1.38629 1.38629 1.38629 1.38629
365 0.03714 4.00481 4.00481 1.46634 0.26236 1.09861 0.40547
366 13 0.14346 3.36849 2.79427 3.26904 13 - -
367 1.38629 1.38629 1.38629 1.38629
368 0.03714 4.00481 4.00481 1.46634 0.26236 1.09861 0.40547
369 14 3.07674 2.58759 3.12535 0.18060 14 - -
370 1.38629 1.38629 1.38629 1.38629
371 0.03714 4.00481 4.00481 1.46634 0.26236 1.09861 0.40547
372 15 2.93930 3.57580 0.11848 3.47923 15 - -
373 1.38629 1.38629 1.38629 1.38629
374 0.03714 4.00481 4.00481 1.46634 0.26236 1.09861 0.40547
375 16 3.41954 0.13184 3.46957 2.81911 16 - -
376 1.38629 1.38629 1.38629 1.38629
377 0.03714 4.00481 4.00481 1.46634 0.26236 1.09861 0.40547
378 17 3.41954 0.13184 3.46957 2.81911 17 - -
379 1.38629 1.38629 1.38629 1.38629
380 0.03714 4.00481 4.00481 1.46634 0.26236 1.09861 0.40547
381 18 3.07674 2.58759 3.12535 0.18060 18 - -
382 1.38629 1.38629 1.38629 1.38629
383 0.03714 4.00481 4.00481 1.46634 0.26236 1.09861 0.40547
384 19 2.93930 3.57580 0.11848 3.47923 19 - -
385 1.38629 1.38629 1.38629 1.38629
386 0.03714 4.00481 4.00481 1.46634 0.26236 1.09861 0.40547
387 20 2.93930 3.57580 0.11848 3.47923 20 - -
388 1.38629 1.38629 1.38629 1.38629
389 0.03714 4.00481 4.00481 1.46634 0.26236 1.09861 0.40547
390 21 2.93930 3.57580 0.11848 3.47923 21 - -
391 1.38629 1.38629 1.38629 1.38629
392 0.03714 4.00481 4.00481 1.46634 0.26236 1.09861 0.40547
393 22 0.14346 3.36849 2.79427 3.26904 22 - -
394 1.38629 1.38629 1.38629 1.38629
395 0.03714 4.00481 4.00481 1.46634 0.26236 1.09861 0.40547
396 23 2.93930 3.57580 0.11848 3.47923 23 - -
397 1.38629 1.38629 1.38629 1.38629
398 0.03714 4.00481 4.00481 1.46634 0.26236 1.09861 0.40547
399 24 3.07674 2.58759 3.12535 0.18060 24 - -
400 1.38629 1.38629 1.38629 1.38629
401 0.03714 4.00481 4.00481 1.46634 0.26236 1.09861 0.40547
402 25 0.14346 3.36849 2.79427 3.26904 25 - -
403 1.38629 1.38629 1.38629 1.38629
404 0.03714 4.00481 4.00481 1.46634 0.26236 1.09861 0.40547
405 26 3.07674 2.58759 3.12535 0.18060 26 - -
406 1.38629 1.38629 1.38629 1.38629
407 0.03714 4.00481 4.00481 1.46634 0.26236 1.09861 0.40547
408 27 2.93930 3.57580 0.11848 3.47923 27 - -
409 1.38629 1.38629 1.38629 1.38629
410 0.03714 4.00481 4.00481 1.46634 0.26236 1.09861 0.40547
411 28 3.07674 2.58759 3.12535 0.18060 28 - -
412 1.38629 1.38629 1.38629 1.38629
413 0.03714 4.00481 4.00481 1.46634 0.26236 1.09861 0.40547
414 29 3.41954 0.13184 3.46957 2.81911 29 - -
415 1.38629 1.38629 1.38629 1.38629
416 0.03714 4.00481 4.00481 1.46634 0.26236 1.09861 0.40547
417 30 3.07674 2.58759 3.12535 0.18060 30 - -
418 1.38629 1.38629 1.38629 1.38629
419 0.03714 4.00481 4.00481 1.46634 0.26236 1.09861 0.40547
420 31 2.93930 3.57580 0.11848 3.47923 31 - -
421 1.38629 1.38629 1.38629 1.38629
422 0.03714 4.00481 4.00481 1.46634 0.26236 1.09861 0.40547
423 32 3.07674 2.58759 3.12535 0.18060 32 - -
424 1.38629 1.38629 1.38629 1.38629
425 0.03714 4.00481 4.00481 1.46634 0.26236 1.09861 0.40547
426 33 0.14346 3.36849 2.79427 3.26904 33 - -
427 1.38629 1.38629 1.38629 1.38629
428 0.03714 4.00481 4.00481 1.46634 0.26236 1.09861 0.40547
429 34 3.07674 2.58759 3.12535 0.18060 34 - -
430 1.38629 1.38629 1.38629 1.38629
431 0.03714 4.00481 4.00481 1.46634 0.26236 1.09861 0.40547
432 35 3.41954 0.13184 3.46957 2.81911 35 - -
433 1.38629 1.38629 1.38629 1.38629
434 0.03714 4.00481 4.00481 1.46634 0.26236 1.09861 0.40547
435 36 0.14346 3.36849 2.79427 3.26904 36 - -
436 1.38629 1.38629 1.38629 1.38629
437 0.03714 4.00481 4.00481 1.46634 0.26236 1.09861 0.40547
438 37 2.93930 3.57580 0.11848 3.47923 37 - -
439 1.38629 1.38629 1.38629 1.38629
440 0.03714 4.00481 4.00481 1.46634 0.26236 1.09861 0.40547
441 38 3.07674 2.58759 3.12535 0.18060 38 - -
442 1.38629 1.38629 1.38629 1.38629
443 0.03714 4.00481 4.00481 1.46634 0.26236 1.09861 0.40547
444 39 2.93930 3.57580 0.11848 3.47923 39 - -
445 1.38629 1.38629 1.38629 1.38629
446 0.03714 4.00481 4.00481 1.46634 0.26236 1.09861 0.40547
447 40 3.07674 2.58759 3.12535 0.18060 40 - -
448 1.38629 1.38629 1.38629 1.38629
449 0.03714 4.00481 4.00481 1.46634 0.26236 1.09861 0.40547
450 41 3.41954 0.13184 3.46957 2.81911 41 - -
451 1.38629 1.38629 1.38629 1.38629
452 0.03714 4.00481 4.00481 1.46634 0.26236 1.09861 0.40547
453 42 3.41954 0.13184 3.46957 2.81911 42 - -
454 1.38629 1.38629 1.38629 1.38629
455 0.03714 4.00481 4.00481 1.46634 0.26236 1.09861 0.40547
456 43 2.93930 3.57580 0.11848 3.47923 43 - -
457 1.38629 1.38629 1.38629 1.38629
458 0.03714 4.00481 4.00481 1.46634 0.26236 1.09861 0.40547
459 44 3.07674 2.58759 3.12535 0.18060 44 - -
460 1.38629 1.38629 1.38629 1.38629
461 0.03714 4.00481 4.00481 1.46634 0.26236 1.09861 0.40547
462 45 0.14346 3.36849 2.79427 3.26904 45 - -
463 1.38629 1.38629 1.38629 1.38629
464 0.01874 3.98641 * 1.46634 0.26236 0.00000 *
465 //
466 HMMER3/b [3.0 | March 2010]
467 NAME 3_End_Oomycota_58S_end_fifteen_long
468 LENG 45
469 ALPH DNA
470 RF no
471 CS no
472 MAP yes
473 DATE Mon Jan 23 23:04:33 2012
474 NSEQ 2
475 EFFN 2.000000
476 CKSUM 3914797017
477 STATS LOCAL MSV -7.4374 0.72820
478 STATS LOCAL VITERBI -8.4197 0.72820
479 STATS LOCAL FORWARD -3.4238 0.72820
480 HMM A C G T
481 m->m m->i m->d i->m i->i d->m d->d
482 COMPO 1.66221 1.33035 1.32438 1.27323
483 1.38629 1.38629 1.38629 1.38629
484 0.04879 3.73767 3.73767 1.46634 0.26236 0.00000 *
485 1 2.81865 0.23582 2.88868 2.35662 1 - -
486 1.38629 1.38629 1.38629 1.38629
487 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
488 2 0.23862 2.84929 2.43386 2.70756 2 - -
489 1.38629 1.38629 1.38629 1.38629
490 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
491 3 2.81865 0.23582 2.88868 2.35662 3 - -
492 1.38629 1.38629 1.38629 1.38629
493 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
494 4 2.81865 0.23582 2.88868 2.35662 4 - -
495 1.38629 1.38629 1.38629 1.38629
496 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
497 5 2.57915 2.25909 2.64442 0.28946 5 - -
498 1.38629 1.38629 1.38629 1.38629
499 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
500 6 2.81865 0.23582 2.88868 2.35662 6 - -
501 1.38629 1.38629 1.38629 1.38629
502 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
503 7 2.81865 0.23582 2.88868 2.35662 7 - -
504 1.38629 1.38629 1.38629 1.38629
505 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
506 8 2.53331 3.02441 0.20344 2.88069 8 - -
507 1.38629 1.38629 1.38629 1.38629
508 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
509 9 2.53331 3.02441 0.20344 2.88069 9 - -
510 1.38629 1.38629 1.38629 1.38629
511 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
512 10 2.53331 3.02441 0.20344 2.88069 10 - -
513 1.38629 1.38629 1.38629 1.38629
514 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
515 11 2.57915 2.25909 2.64442 0.28946 11 - -
516 1.38629 1.38629 1.38629 1.38629
517 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
518 12 2.57915 2.25909 2.64442 0.28946 12 - -
519 1.38629 1.38629 1.38629 1.38629
520 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
521 13 0.23862 2.84929 2.43386 2.70756 13 - -
522 1.38629 1.38629 1.38629 1.38629
523 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
524 14 2.57915 2.25909 2.64442 0.28946 14 - -
525 1.38629 1.38629 1.38629 1.38629
526 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
527 15 2.57915 2.25909 2.64442 0.28946 15 - -
528 1.38629 1.38629 1.38629 1.38629
529 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
530 16 2.81865 0.23582 2.88868 2.35662 16 - -
531 1.38629 1.38629 1.38629 1.38629
532 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
533 17 2.81865 0.23582 2.88868 2.35662 17 - -
534 1.38629 1.38629 1.38629 1.38629
535 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
536 18 2.57915 2.25909 2.64442 0.28946 18 - -
537 1.38629 1.38629 1.38629 1.38629
538 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
539 19 2.53331 3.02441 0.20344 2.88069 19 - -
540 1.38629 1.38629 1.38629 1.38629
541 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
542 20 2.53331 3.02441 0.20344 2.88069 20 - -
543 1.38629 1.38629 1.38629 1.38629
544 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
545 21 0.23862 2.84929 2.43386 2.70756 21 - -
546 1.38629 1.38629 1.38629 1.38629
547 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
548 22 2.53331 3.02441 0.20344 2.88069 22 - -
549 1.38629 1.38629 1.38629 1.38629
550 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
551 23 2.53331 3.02441 0.20344 2.88069 23 - -
552 1.38629 1.38629 1.38629 1.38629
553 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
554 24 2.57915 2.25909 2.64442 0.28946 24 - -
555 1.38629 1.38629 1.38629 1.38629
556 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
557 25 0.23862 2.84929 2.43386 2.70756 25 - -
558 1.38629 1.38629 1.38629 1.38629
559 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
560 26 2.57915 2.25909 2.64442 0.28946 26 - -
561 1.38629 1.38629 1.38629 1.38629
562 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
563 27 2.53331 3.02441 0.20344 2.88069 27 - -
564 1.38629 1.38629 1.38629 1.38629
565 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
566 28 2.81865 0.23582 2.88868 2.35662 28 - -
567 1.38629 1.38629 1.38629 1.38629
568 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
569 29 2.81865 0.23582 2.88868 2.35662 29 - -
570 1.38629 1.38629 1.38629 1.38629
571 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
572 30 2.57915 2.25909 2.64442 0.28946 30 - -
573 1.38629 1.38629 1.38629 1.38629
574 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
575 31 2.53331 3.02441 0.20344 2.88069 31 - -
576 1.38629 1.38629 1.38629 1.38629
577 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
578 32 2.57915 2.25909 2.64442 0.28946 32 - -
579 1.38629 1.38629 1.38629 1.38629
580 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
581 33 0.23862 2.84929 2.43386 2.70756 33 - -
582 1.38629 1.38629 1.38629 1.38629
583 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
584 34 2.57915 2.25909 2.64442 0.28946 34 - -
585 1.38629 1.38629 1.38629 1.38629
586 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
587 35 2.81865 0.23582 2.88868 2.35662 35 - -
588 1.38629 1.38629 1.38629 1.38629
589 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
590 36 0.23862 2.84929 2.43386 2.70756 36 - -
591 1.38629 1.38629 1.38629 1.38629
592 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
593 37 2.53331 3.02441 0.20344 2.88069 37 - -
594 1.38629 1.38629 1.38629 1.38629
595 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
596 38 2.57915 2.25909 2.64442 0.28946 38 - -
597 1.38629 1.38629 1.38629 1.38629
598 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
599 39 2.53331 3.02441 0.20344 2.88069 39 - -
600 1.38629 1.38629 1.38629 1.38629
601 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
602 40 2.57915 2.25909 2.64442 0.28946 40 - -
603 1.38629 1.38629 1.38629 1.38629
604 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
605 41 2.81865 0.23582 2.88868 2.35662 41 - -
606 1.38629 1.38629 1.38629 1.38629
607 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
608 42 2.81865 0.23582 2.88868 2.35662 42 - -
609 1.38629 1.38629 1.38629 1.38629
610 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
611 43 2.53331 3.02441 0.20344 2.88069 43 - -
612 1.38629 1.38629 1.38629 1.38629
613 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
614 44 2.57915 2.25909 2.64442 0.28946 44 - -
615 1.38629 1.38629 1.38629 1.38629
616 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
617 45 0.23862 2.84929 2.43386 2.70756 45 - -
618 1.38629 1.38629 1.38629 1.38629
619 0.02469 3.71357 * 1.46634 0.26236 0.00000 *
620 //
621 HMMER3/b [3.0 | March 2010]
622 NAME 3_End_Oomycota_58S_end_fifty_long
623 LENG 45
624 ALPH DNA
625 RF no
626 CS no
627 MAP yes
628 DATE Mon Jan 23 23:11:28 2012
629 NSEQ 2
630 EFFN 2.000000
631 CKSUM 967929854
632 STATS LOCAL MSV -7.3485 0.72825
633 STATS LOCAL VITERBI -8.2404 0.72825
634 STATS LOCAL FORWARD -3.4311 0.72825
635 HMM A C G T
636 m->m m->i m->d i->m i->i d->m d->d
637 COMPO 1.52311 1.27981 1.44171 1.31919
638 1.38629 1.38629 1.38629 1.38629
639 0.04879 3.73767 3.73767 1.46634 0.26236 0.00000 *
640 1 0.23862 2.84929 2.43386 2.70756 1 - -
641 1.38629 1.38629 1.38629 1.38629
642 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
643 2 2.81865 0.23582 2.88868 2.35662 2 - -
644 1.38629 1.38629 1.38629 1.38629
645 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
646 3 2.81865 0.23582 2.88868 2.35662 3 - -
647 1.38629 1.38629 1.38629 1.38629
648 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
649 4 2.57915 2.25909 2.64442 0.28946 4 - -
650 1.38629 1.38629 1.38629 1.38629
651 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
652 5 2.81865 0.23582 2.88868 2.35662 5 - -
653 1.38629 1.38629 1.38629 1.38629
654 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
655 6 2.57915 2.25909 2.64442 0.28946 6 - -
656 1.38629 1.38629 1.38629 1.38629
657 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
658 7 2.53331 3.02441 0.20344 2.88069 7 - -
659 1.38629 1.38629 1.38629 1.38629
660 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
661 8 2.53331 3.02441 0.20344 2.88069 8 - -
662 1.38629 1.38629 1.38629 1.38629
663 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
664 9 2.53331 3.02441 0.20344 2.88069 9 - -
665 1.38629 1.38629 1.38629 1.38629
666 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
667 10 2.81865 0.23582 2.88868 2.35662 10 - -
668 1.38629 1.38629 1.38629 1.38629
669 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
670 11 2.57915 2.25909 2.64442 0.28946 11 - -
671 1.38629 1.38629 1.38629 1.38629
672 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
673 12 0.23862 2.84929 2.43386 2.70756 12 - -
674 1.38629 1.38629 1.38629 1.38629
675 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
676 13 2.53331 3.02441 0.20344 2.88069 13 - -
677 1.38629 1.38629 1.38629 1.38629
678 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
679 14 2.57915 2.25909 2.64442 0.28946 14 - -
680 1.38629 1.38629 1.38629 1.38629
681 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
682 15 2.81865 0.23582 2.88868 2.35662 15 - -
683 1.38629 1.38629 1.38629 1.38629
684 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
685 16 2.81865 0.23582 2.88868 2.35662 16 - -
686 1.38629 1.38629 1.38629 1.38629
687 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
688 17 2.57915 2.25909 2.64442 0.28946 17 - -
689 1.38629 1.38629 1.38629 1.38629
690 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
691 18 2.57915 2.25909 2.64442 0.28946 18 - -
692 1.38629 1.38629 1.38629 1.38629
693 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
694 19 2.53331 3.02441 0.20344 2.88069 19 - -
695 1.38629 1.38629 1.38629 1.38629
696 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
697 20 0.23862 2.84929 2.43386 2.70756 20 - -
698 1.38629 1.38629 1.38629 1.38629
699 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
700 21 2.53331 3.02441 0.20344 2.88069 21 - -
701 1.38629 1.38629 1.38629 1.38629
702 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
703 22 0.23862 2.84929 2.43386 2.70756 22 - -
704 1.38629 1.38629 1.38629 1.38629
705 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
706 23 2.53331 3.02441 0.20344 2.88069 23 - -
707 1.38629 1.38629 1.38629 1.38629
708 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
709 24 2.57915 2.25909 2.64442 0.28946 24 - -
710 1.38629 1.38629 1.38629 1.38629
711 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
712 25 0.23862 2.84929 2.43386 2.70756 25 - -
713 1.38629 1.38629 1.38629 1.38629
714 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
715 26 2.57915 2.25909 2.64442 0.28946 26 - -
716 1.38629 1.38629 1.38629 1.38629
717 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
718 27 2.53331 3.02441 0.20344 2.88069 27 - -
719 1.38629 1.38629 1.38629 1.38629
720 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
721 28 2.81865 0.23582 2.88868 2.35662 28 - -
722 1.38629 1.38629 1.38629 1.38629
723 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
724 29 2.81865 0.23582 2.88868 2.35662 29 - -
725 1.38629 1.38629 1.38629 1.38629
726 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
727 30 2.57915 2.25909 2.64442 0.28946 30 - -
728 1.38629 1.38629 1.38629 1.38629
729 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
730 31 2.81865 0.23582 2.88868 2.35662 31 - -
731 1.38629 1.38629 1.38629 1.38629
732 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
733 32 2.57915 2.25909 2.64442 0.28946 32 - -
734 1.38629 1.38629 1.38629 1.38629
735 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
736 33 0.23862 2.84929 2.43386 2.70756 33 - -
737 1.38629 1.38629 1.38629 1.38629
738 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
739 34 2.57915 2.25909 2.64442 0.28946 34 - -
740 1.38629 1.38629 1.38629 1.38629
741 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
742 35 2.81865 0.23582 2.88868 2.35662 35 - -
743 1.38629 1.38629 1.38629 1.38629
744 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
745 36 0.23862 2.84929 2.43386 2.70756 36 - -
746 1.38629 1.38629 1.38629 1.38629
747 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
748 37 2.53331 3.02441 0.20344 2.88069 37 - -
749 1.38629 1.38629 1.38629 1.38629
750 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
751 38 2.57915 2.25909 2.64442 0.28946 38 - -
752 1.38629 1.38629 1.38629 1.38629
753 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
754 39 2.53331 3.02441 0.20344 2.88069 39 - -
755 1.38629 1.38629 1.38629 1.38629
756 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
757 40 2.57915 2.25909 2.64442 0.28946 40 - -
758 1.38629 1.38629 1.38629 1.38629
759 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
760 41 2.81865 0.23582 2.88868 2.35662 41 - -
761 1.38629 1.38629 1.38629 1.38629
762 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
763 42 2.81865 0.23582 2.88868 2.35662 42 - -
764 1.38629 1.38629 1.38629 1.38629
765 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
766 43 0.23862 2.84929 2.43386 2.70756 43 - -
767 1.38629 1.38629 1.38629 1.38629
768 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
769 44 2.81865 0.23582 2.88868 2.35662 44 - -
770 1.38629 1.38629 1.38629 1.38629
771 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
772 45 0.23862 2.84929 2.43386 2.70756 45 - -
773 1.38629 1.38629 1.38629 1.38629
774 0.02469 3.71357 * 1.46634 0.26236 0.00000 *
775 //
776 HMMER3/b [3.0 | March 2010]
777 NAME 3_End_Oomycota_58S_end_fiftyone_long
778 LENG 45
779 ALPH DNA
780 RF no
781 CS no
782 MAP yes
783 DATE Mon Jan 23 23:11:37 2012
784 NSEQ 7
785 EFFN 3.264160
786 CKSUM 713685856
787 STATS LOCAL MSV -8.1498 0.71932
788 STATS LOCAL VITERBI -7.7201 0.71932
789 STATS LOCAL FORWARD -4.3295 0.71932
790 HMM A C G T
791 m->m m->i m->d i->m i->i d->m d->d
792 COMPO 1.55404 1.31478 1.38653 1.30885
793 1.38629 1.38629 1.38629 1.38629
794 0.03729 4.00080 4.00080 1.46634 0.26236 0.00000 *
795 1 3.41129 0.13284 3.46167 2.81309 1 - -
796 1.38629 1.38629 1.38629 1.38629
797 0.03729 4.00080 4.00080 1.46634 0.26236 1.09861 0.40547
798 2 3.41129 0.13284 3.46167 2.81309 2 - -
799 1.38629 1.38629 1.38629 1.38629
800 0.03729 4.00080 4.00080 1.46634 0.26236 1.09861 0.40547
801 3 0.14442 3.36134 2.78962 3.26122 3 - -
802 1.38629 1.38629 1.38629 1.38629
803 0.03729 4.00080 4.00080 1.46634 0.26236 1.09861 0.40547
804 4 3.41129 0.13284 3.46167 2.81309 4 - -
805 1.38629 1.38629 1.38629 1.38629
806 0.03729 4.00080 4.00080 1.46634 0.26236 1.09861 0.40547
807 5 3.41129 0.13284 3.46167 2.81309 5 - -
808 1.38629 1.38629 1.38629 1.38629
809 0.03729 4.00080 4.00080 1.46634 0.26236 1.09861 0.40547
810 6 3.06955 2.58301 3.11843 0.18178 6 - -
811 1.38629 1.38629 1.38629 1.38629
812 0.03729 4.00080 4.00080 1.46634 0.26236 1.09861 0.40547
813 7 0.14442 3.36134 2.78962 3.26122 7 - -
814 1.38629 1.38629 1.38629 1.38629
815 0.03729 4.00080 4.00080 1.46634 0.26236 1.09861 0.40547
816 8 3.06955 2.58301 3.11843 0.18178 8 - -
817 1.38629 1.38629 1.38629 1.38629
818 0.03729 4.00080 4.00080 1.46634 0.26236 1.09861 0.40547
819 9 2.93428 3.56852 0.11929 3.47120 9 - -
820 1.38629 1.38629 1.38629 1.38629
821 0.03729 4.00080 4.00080 1.46634 0.26236 1.09861 0.40547
822 10 3.41129 0.13284 3.46167 2.81309 10 - -
823 1.38629 1.38629 1.38629 1.38629
824 0.03729 4.00080 4.00080 1.46634 0.26236 1.09861 0.40547
825 11 3.06955 2.58301 3.11843 0.18178 11 - -
826 1.38629 1.38629 1.38629 1.38629
827 0.03729 4.00080 4.00080 1.46634 0.26236 1.09861 0.40547
828 12 0.14442 3.36134 2.78962 3.26122 12 - -
829 1.38629 1.38629 1.38629 1.38629
830 0.03729 4.00080 4.00080 1.46634 0.26236 1.09861 0.40547
831 13 3.41129 0.13284 3.46167 2.81309 13 - -
832 1.38629 1.38629 1.38629 1.38629
833 0.03729 4.00080 4.00080 1.46634 0.26236 1.09861 0.40547
834 14 2.93428 3.56852 0.11929 3.47120 14 - -
835 1.38629 1.38629 1.38629 1.38629
836 0.03729 4.00080 4.00080 1.46634 0.26236 1.09861 0.40547
837 15 3.41129 0.13284 3.46167 2.81309 15 - -
838 1.38629 1.38629 1.38629 1.38629
839 0.03729 4.00080 4.00080 1.46634 0.26236 1.09861 0.40547
840 16 3.06955 2.58301 3.11843 0.18178 16 - -
841 1.38629 1.38629 1.38629 1.38629
842 0.03729 4.00080 4.00080 1.46634 0.26236 1.09861 0.40547
843 17 0.14442 3.36134 2.78962 3.26122 17 - -
844 1.38629 1.38629 1.38629 1.38629
845 0.03729 4.00080 4.00080 1.46634 0.26236 1.09861 0.40547
846 18 3.06955 2.58301 3.11843 0.18178 18 - -
847 1.38629 1.38629 1.38629 1.38629
848 0.03729 4.00080 4.00080 1.46634 0.26236 1.09861 0.40547
849 19 2.93428 3.56852 0.11929 3.47120 19 - -
850 1.38629 1.38629 1.38629 1.38629
851 0.03729 4.00080 4.00080 1.46634 0.26236 1.09861 0.40547
852 20 2.93428 3.56852 0.11929 3.47120 20 - -
853 1.38629 1.38629 1.38629 1.38629
854 0.03729 4.00080 4.00080 1.46634 0.26236 1.09861 0.40547
855 21 0.14442 3.36134 2.78962 3.26122 21 - -
856 1.38629 1.38629 1.38629 1.38629
857 0.03729 4.00080 4.00080 1.46634 0.26236 1.09861 0.40547
858 22 2.93428 3.56852 0.11929 3.47120 22 - -
859 1.38629 1.38629 1.38629 1.38629
860 0.03729 4.00080 4.00080 1.46634 0.26236 1.09861 0.40547
861 23 2.93428 3.56852 0.11929 3.47120 23 - -
862 1.38629 1.38629 1.38629 1.38629
863 0.03729 4.00080 4.00080 1.46634 0.26236 1.09861 0.40547
864 24 3.06955 2.58301 3.11843 0.18178 24 - -
865 1.38629 1.38629 1.38629 1.38629
866 0.03729 4.00080 4.00080 1.46634 0.26236 1.09861 0.40547
867 25 0.14442 3.36134 2.78962 3.26122 25 - -
868 1.38629 1.38629 1.38629 1.38629
869 0.03729 4.00080 4.00080 1.46634 0.26236 1.09861 0.40547
870 26 3.06955 2.58301 3.11843 0.18178 26 - -
871 1.38629 1.38629 1.38629 1.38629
872 0.03729 4.00080 4.00080 1.46634 0.26236 1.09861 0.40547
873 27 2.93428 3.56852 0.11929 3.47120 27 - -
874 1.38629 1.38629 1.38629 1.38629
875 0.03729 4.00080 4.00080 1.46634 0.26236 1.09861 0.40547
876 28 3.41129 0.13284 3.46167 2.81309 28 - -
877 1.38629 1.38629 1.38629 1.38629
878 0.03729 4.00080 4.00080 1.46634 0.26236 1.09861 0.40547
879 29 3.41129 0.13284 3.46167 2.81309 29 - -
880 1.38629 1.38629 1.38629 1.38629
881 0.03729 4.00080 4.00080 1.46634 0.26236 1.09861 0.40547
882 30 3.06955 2.58301 3.11843 0.18178 30 - -
883 1.38629 1.38629 1.38629 1.38629
884 0.03729 4.00080 4.00080 1.46634 0.26236 1.09861 0.40547
885 31 2.93428 3.56852 0.11929 3.47120 31 - -
886 1.38629 1.38629 1.38629 1.38629
887 0.03729 4.00080 4.00080 1.46634 0.26236 1.09861 0.40547
888 32 3.06955 2.58301 3.11843 0.18178 32 - -
889 1.38629 1.38629 1.38629 1.38629
890 0.03729 4.00080 4.00080 1.46634 0.26236 1.09861 0.40547
891 33 2.93428 3.56852 0.11929 3.47120 33 - -
892 1.38629 1.38629 1.38629 1.38629
893 0.03729 4.00080 4.00080 1.46634 0.26236 1.09861 0.40547
894 34 3.06955 2.58301 3.11843 0.18178 34 - -
895 1.38629 1.38629 1.38629 1.38629
896 0.03729 4.00080 4.00080 1.46634 0.26236 1.09861 0.40547
897 35 3.41129 0.13284 3.46167 2.81309 35 - -
898 1.38629 1.38629 1.38629 1.38629
899 0.03729 4.00080 4.00080 1.46634 0.26236 1.09861 0.40547
900 36 0.14442 3.36134 2.78962 3.26122 36 - -
901 1.38629 1.38629 1.38629 1.38629
902 0.03729 4.00080 4.00080 1.46634 0.26236 1.09861 0.40547
903 37 2.93428 3.56852 0.11929 3.47120 37 - -
904 1.38629 1.38629 1.38629 1.38629
905 0.03729 4.00080 4.00080 1.46634 0.26236 1.09861 0.40547
906 38 3.06955 2.58301 3.11843 0.18178 38 - -
907 1.38629 1.38629 1.38629 1.38629
908 0.03729 4.00080 4.00080 1.46634 0.26236 1.09861 0.40547
909 39 2.93428 3.56852 0.11929 3.47120 39 - -
910 1.38629 1.38629 1.38629 1.38629
911 0.03729 4.00080 4.00080 1.46634 0.26236 1.09861 0.40547
912 40 3.06955 2.58301 3.11843 0.18178 40 - -
913 1.38629 1.38629 1.38629 1.38629
914 0.03729 4.00080 4.00080 1.46634 0.26236 1.09861 0.40547
915 41 3.06955 2.58301 3.11843 0.18178 41 - -
916 1.38629 1.38629 1.38629 1.38629
917 0.03729 4.00080 4.00080 1.46634 0.26236 1.09861 0.40547
918 42 3.41129 0.13284 3.46167 2.81309 42 - -
919 1.38629 1.38629 1.38629 1.38629
920 0.03729 4.00080 4.00080 1.46634 0.26236 1.09861 0.40547
921 43 3.41129 0.13284 3.46167 2.81309 43 - -
922 1.38629 1.38629 1.38629 1.38629
923 0.03729 4.00080 4.00080 1.46634 0.26236 1.09861 0.40547
924 44 0.14442 3.36134 2.78962 3.26122 44 - -
925 1.38629 1.38629 1.38629 1.38629
926 0.03729 4.00080 4.00080 1.46634 0.26236 1.09861 0.40547
927 45 0.14442 3.36134 2.78962 3.26122 45 - -
928 1.38629 1.38629 1.38629 1.38629
929 0.01882 3.98232 * 1.46634 0.26236 0.00000 *
930 //
931 HMMER3/b [3.0 | March 2010]
932 NAME 3_End_Oomycota_58S_end_five_long
933 LENG 45
934 ALPH DNA
935 RF no
936 CS no
937 MAP yes
938 DATE Mon Jan 23 23:02:23 2012
939 NSEQ 2
940 EFFN 2.000000
941 CKSUM 1892825005
942 STATS LOCAL MSV -7.2444 0.72835
943 STATS LOCAL VITERBI -8.3433 0.72835
944 STATS LOCAL FORWARD -3.3819 0.72835
945 HMM A C G T
946 m->m m->i m->d i->m i->i d->m d->d
947 COMPO 1.73627 1.44157 1.26874 1.18390
948 1.38629 1.38629 1.38629 1.38629
949 0.04879 3.73767 3.73767 1.46634 0.26236 0.00000 *
950 1 2.81865 0.23582 2.88868 2.35662 1 - -
951 1.38629 1.38629 1.38629 1.38629
952 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
953 2 0.23862 2.84929 2.43386 2.70756 2 - -
954 1.38629 1.38629 1.38629 1.38629
955 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
956 3 2.81865 0.23582 2.88868 2.35662 3 - -
957 1.38629 1.38629 1.38629 1.38629
958 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
959 4 2.57915 2.25909 2.64442 0.28946 4 - -
960 1.38629 1.38629 1.38629 1.38629
961 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
962 5 2.57915 2.25909 2.64442 0.28946 5 - -
963 1.38629 1.38629 1.38629 1.38629
964 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
965 6 2.81865 0.23582 2.88868 2.35662 6 - -
966 1.38629 1.38629 1.38629 1.38629
967 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
968 7 2.81865 0.23582 2.88868 2.35662 7 - -
969 1.38629 1.38629 1.38629 1.38629
970 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
971 8 2.53331 3.02441 0.20344 2.88069 8 - -
972 1.38629 1.38629 1.38629 1.38629
973 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
974 9 2.53331 3.02441 0.20344 2.88069 9 - -
975 1.38629 1.38629 1.38629 1.38629
976 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
977 10 2.53331 3.02441 0.20344 2.88069 10 - -
978 1.38629 1.38629 1.38629 1.38629
979 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
980 11 2.57915 2.25909 2.64442 0.28946 11 - -
981 1.38629 1.38629 1.38629 1.38629
982 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
983 12 2.57915 2.25909 2.64442 0.28946 12 - -
984 1.38629 1.38629 1.38629 1.38629
985 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
986 13 0.23862 2.84929 2.43386 2.70756 13 - -
987 1.38629 1.38629 1.38629 1.38629
988 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
989 14 2.53331 3.02441 0.20344 2.88069 14 - -
990 1.38629 1.38629 1.38629 1.38629
991 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
992 15 2.57915 2.25909 2.64442 0.28946 15 - -
993 1.38629 1.38629 1.38629 1.38629
994 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
995 16 2.81865 0.23582 2.88868 2.35662 16 - -
996 1.38629 1.38629 1.38629 1.38629
997 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
998 17 2.81865 0.23582 2.88868 2.35662 17 - -
999 1.38629 1.38629 1.38629 1.38629
1000 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
1001 18 2.57915 2.25909 2.64442 0.28946 18 - -
1002 1.38629 1.38629 1.38629 1.38629
1003 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
1004 19 2.53331 3.02441 0.20344 2.88069 19 - -
1005 1.38629 1.38629 1.38629 1.38629
1006 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
1007 20 2.53331 3.02441 0.20344 2.88069 20 - -
1008 1.38629 1.38629 1.38629 1.38629
1009 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
1010 21 2.53331 3.02441 0.20344 2.88069 21 - -
1011 1.38629 1.38629 1.38629 1.38629
1012 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
1013 22 0.23862 2.84929 2.43386 2.70756 22 - -
1014 1.38629 1.38629 1.38629 1.38629
1015 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
1016 23 2.53331 3.02441 0.20344 2.88069 23 - -
1017 1.38629 1.38629 1.38629 1.38629
1018 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
1019 24 2.57915 2.25909 2.64442 0.28946 24 - -
1020 1.38629 1.38629 1.38629 1.38629
1021 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
1022 25 0.23862 2.84929 2.43386 2.70756 25 - -
1023 1.38629 1.38629 1.38629 1.38629
1024 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
1025 26 2.57915 2.25909 2.64442 0.28946 26 - -
1026 1.38629 1.38629 1.38629 1.38629
1027 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
1028 27 2.53331 3.02441 0.20344 2.88069 27 - -
1029 1.38629 1.38629 1.38629 1.38629
1030 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
1031 28 2.81865 0.23582 2.88868 2.35662 28 - -
1032 1.38629 1.38629 1.38629 1.38629
1033 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
1034 29 2.57915 2.25909 2.64442 0.28946 29 - -
1035 1.38629 1.38629 1.38629 1.38629
1036 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
1037 30 2.57915 2.25909 2.64442 0.28946 30 - -
1038 1.38629 1.38629 1.38629 1.38629
1039 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
1040 31 2.53331 3.02441 0.20344 2.88069 31 - -
1041 1.38629 1.38629 1.38629 1.38629
1042 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
1043 32 2.57915 2.25909 2.64442 0.28946 32 - -
1044 1.38629 1.38629 1.38629 1.38629
1045 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
1046 33 0.23862 2.84929 2.43386 2.70756 33 - -
1047 1.38629 1.38629 1.38629 1.38629
1048 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
1049 34 2.57915 2.25909 2.64442 0.28946 34 - -
1050 1.38629 1.38629 1.38629 1.38629
1051 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
1052 35 2.81865 0.23582 2.88868 2.35662 35 - -
1053 1.38629 1.38629 1.38629 1.38629
1054 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
1055 36 0.23862 2.84929 2.43386 2.70756 36 - -
1056 1.38629 1.38629 1.38629 1.38629
1057 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
1058 37 2.53331 3.02441 0.20344 2.88069 37 - -
1059 1.38629 1.38629 1.38629 1.38629
1060 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
1061 38 2.57915 2.25909 2.64442 0.28946 38 - -
1062 1.38629 1.38629 1.38629 1.38629
1063 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
1064 39 2.53331 3.02441 0.20344 2.88069 39 - -
1065 1.38629 1.38629 1.38629 1.38629
1066 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
1067 40 2.57915 2.25909 2.64442 0.28946 40 - -
1068 1.38629 1.38629 1.38629 1.38629
1069 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
1070 41 2.81865 0.23582 2.88868 2.35662 41 - -
1071 1.38629 1.38629 1.38629 1.38629
1072 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
1073 42 2.81865 0.23582 2.88868 2.35662 42 - -
1074 1.38629 1.38629 1.38629 1.38629
1075 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
1076 43 2.53331 3.02441 0.20344 2.88069 43 - -
1077 1.38629 1.38629 1.38629 1.38629
1078 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
1079 44 2.57915 2.25909 2.64442 0.28946 44 - -
1080 1.38629 1.38629 1.38629 1.38629
1081 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
1082 45 2.57915 2.25909 2.64442 0.28946 45 - -
1083 1.38629 1.38629 1.38629 1.38629
1084 0.02469 3.71357 * 1.46634 0.26236 0.00000 *
1085 //
1086 HMMER3/b [3.0 | March 2010]
1087 NAME 3_End_Oomycota_58S_end_fortyeight_long
1088 LENG 45
1089 ALPH DNA
1090 RF no
1091 CS no
1092 MAP yes
1093 DATE Mon Jan 23 23:11:04 2012
1094 NSEQ 7
1095 EFFN 3.346191
1096 CKSUM 1450221519
1097 STATS LOCAL MSV -8.1812 0.71933
1098 STATS LOCAL VITERBI -7.6059 0.71933
1099 STATS LOCAL FORWARD -4.2073 0.71933
1100 HMM A C G T
1101 m->m m->i m->d i->m i->i d->m d->d
1102 COMPO 1.47372 1.37170 1.38114 1.32441
1103 1.38629 1.38629 1.38629 1.38629
1104 0.03673 4.01570 4.01570 1.46634 0.26236 0.00000 *
1105 1 3.09618 2.59996 3.14405 0.17746 1 - -
1106 1.38629 1.38629 1.38629 1.38629
1107 0.03673 4.01570 4.01570 1.46634 0.26236 1.09861 0.40547
1108 2 0.14091 3.38776 2.80679 3.29014 2 - -
1109 1.38629 1.38629 1.38629 1.38629
1110 0.03673 4.01570 4.01570 1.46634 0.26236 1.09861 0.40547
1111 3 3.44175 0.12918 3.49084 2.83528 3 - -
1112 1.38629 1.38629 1.38629 1.38629
1113 0.03673 4.01570 4.01570 1.46634 0.26236 1.09861 0.40547
1114 4 3.44175 0.12918 3.49084 2.83528 4 - -
1115 1.38629 1.38629 1.38629 1.38629
1116 0.03673 4.01570 4.01570 1.46634 0.26236 1.09861 0.40547
1117 5 2.95275 3.59536 0.11633 3.50082 5 - -
1118 1.38629 1.38629 1.38629 1.38629
1119 0.03673 4.01570 4.01570 1.46634 0.26236 1.09861 0.40547
1120 6 2.95275 3.59536 0.11633 3.50082 6 - -
1121 1.38629 1.38629 1.38629 1.38629
1122 0.03673 4.01570 4.01570 1.46634 0.26236 1.09861 0.40547
1123 7 2.95275 3.59536 0.11633 3.50082 7 - -
1124 1.38629 1.38629 1.38629 1.38629
1125 0.03673 4.01570 4.01570 1.46634 0.26236 1.09861 0.40547
1126 8 2.95275 3.59536 0.11633 3.50082 8 - -
1127 1.38629 1.38629 1.38629 1.38629
1128 0.03673 4.01570 4.01570 1.46634 0.26236 1.09861 0.40547
1129 9 3.44175 0.12918 3.49084 2.83528 9 - -
1130 1.38629 1.38629 1.38629 1.38629
1131 0.03673 4.01570 4.01570 1.46634 0.26236 1.09861 0.40547
1132 10 3.09618 2.59996 3.14405 0.17746 10 - -
1133 1.38629 1.38629 1.38629 1.38629
1134 0.03673 4.01570 4.01570 1.46634 0.26236 1.09861 0.40547
1135 11 0.14091 3.38776 2.80679 3.29014 11 - -
1136 1.38629 1.38629 1.38629 1.38629
1137 0.03673 4.01570 4.01570 1.46634 0.26236 1.09861 0.40547
1138 12 2.95275 3.59536 0.11633 3.50082 12 - -
1139 1.38629 1.38629 1.38629 1.38629
1140 0.03673 4.01570 4.01570 1.46634 0.26236 1.09861 0.40547
1141 13 0.14091 3.38776 2.80679 3.29014 13 - -
1142 1.38629 1.38629 1.38629 1.38629
1143 0.03673 4.01570 4.01570 1.46634 0.26236 1.09861 0.40547
1144 14 3.09618 2.59996 3.14405 0.17746 14 - -
1145 1.38629 1.38629 1.38629 1.38629
1146 0.03673 4.01570 4.01570 1.46634 0.26236 1.09861 0.40547
1147 15 3.44175 0.12918 3.49084 2.83528 15 - -
1148 1.38629 1.38629 1.38629 1.38629
1149 0.03673 4.01570 4.01570 1.46634 0.26236 1.09861 0.40547
1150 16 3.09618 2.59996 3.14405 0.17746 16 - -
1151 1.38629 1.38629 1.38629 1.38629
1152 0.03673 4.01570 4.01570 1.46634 0.26236 1.09861 0.40547
1153 17 3.09618 2.59996 3.14405 0.17746 17 - -
1154 1.38629 1.38629 1.38629 1.38629
1155 0.03673 4.01570 4.01570 1.46634 0.26236 1.09861 0.40547
1156 18 3.44175 0.12918 3.49084 2.83528 18 - -
1157 1.38629 1.38629 1.38629 1.38629
1158 0.03673 4.01570 4.01570 1.46634 0.26236 1.09861 0.40547
1159 19 2.95275 3.59536 0.11633 3.50082 19 - -
1160 1.38629 1.38629 1.38629 1.38629
1161 0.03673 4.01570 4.01570 1.46634 0.26236 1.09861 0.40547
1162 20 2.95275 3.59536 0.11633 3.50082 20 - -
1163 1.38629 1.38629 1.38629 1.38629
1164 0.03673 4.01570 4.01570 1.46634 0.26236 1.09861 0.40547
1165 21 0.14091 3.38776 2.80679 3.29014 21 - -
1166 1.38629 1.38629 1.38629 1.38629
1167 0.03673 4.01570 4.01570 1.46634 0.26236 1.09861 0.40547
1168 22 0.14091 3.38776 2.80679 3.29014 22 - -
1169 1.38629 1.38629 1.38629 1.38629
1170 0.03673 4.01570 4.01570 1.46634 0.26236 1.09861 0.40547
1171 23 2.95275 3.59536 0.11633 3.50082 23 - -
1172 1.38629 1.38629 1.38629 1.38629
1173 0.03673 4.01570 4.01570 1.46634 0.26236 1.09861 0.40547
1174 24 3.09618 2.59996 3.14405 0.17746 24 - -
1175 1.38629 1.38629 1.38629 1.38629
1176 0.03673 4.01570 4.01570 1.46634 0.26236 1.09861 0.40547
1177 25 0.14091 3.38776 2.80679 3.29014 25 - -
1178 1.38629 1.38629 1.38629 1.38629
1179 0.03673 4.01570 4.01570 1.46634 0.26236 1.09861 0.40547
1180 26 3.09618 2.59996 3.14405 0.17746 26 - -
1181 1.38629 1.38629 1.38629 1.38629
1182 0.03673 4.01570 4.01570 1.46634 0.26236 1.09861 0.40547
1183 27 2.95275 3.59536 0.11633 3.50082 27 - -
1184 1.38629 1.38629 1.38629 1.38629
1185 0.03673 4.01570 4.01570 1.46634 0.26236 1.09861 0.40547
1186 28 3.44175 0.12918 3.49084 2.83528 28 - -
1187 1.38629 1.38629 1.38629 1.38629
1188 0.03673 4.01570 4.01570 1.46634 0.26236 1.09861 0.40547
1189 29 3.44175 0.12918 3.49084 2.83528 29 - -
1190 1.38629 1.38629 1.38629 1.38629
1191 0.03673 4.01570 4.01570 1.46634 0.26236 1.09861 0.40547
1192 30 3.09618 2.59996 3.14405 0.17746 30 - -
1193 1.38629 1.38629 1.38629 1.38629
1194 0.03673 4.01570 4.01570 1.46634 0.26236 1.09861 0.40547
1195 31 3.44175 0.12918 3.49084 2.83528 31 - -
1196 1.38629 1.38629 1.38629 1.38629
1197 0.03673 4.01570 4.01570 1.46634 0.26236 1.09861 0.40547
1198 32 3.09618 2.59996 3.14405 0.17746 32 - -
1199 1.38629 1.38629 1.38629 1.38629
1200 0.03673 4.01570 4.01570 1.46634 0.26236 1.09861 0.40547
1201 33 0.14091 3.38776 2.80679 3.29014 33 - -
1202 1.38629 1.38629 1.38629 1.38629
1203 0.03673 4.01570 4.01570 1.46634 0.26236 1.09861 0.40547
1204 34 3.09618 2.59996 3.14405 0.17746 34 - -
1205 1.38629 1.38629 1.38629 1.38629
1206 0.03673 4.01570 4.01570 1.46634 0.26236 1.09861 0.40547
1207 35 3.44175 0.12918 3.49084 2.83528 35 - -
1208 1.38629 1.38629 1.38629 1.38629
1209 0.03673 4.01570 4.01570 1.46634 0.26236 1.09861 0.40547
1210 36 0.14091 3.38776 2.80679 3.29014 36 - -
1211 1.38629 1.38629 1.38629 1.38629
1212 0.03673 4.01570 4.01570 1.46634 0.26236 1.09861 0.40547
1213 37 2.95275 3.59536 0.11633 3.50082 37 - -
1214 1.38629 1.38629 1.38629 1.38629
1215 0.03673 4.01570 4.01570 1.46634 0.26236 1.09861 0.40547
1216 38 3.09618 2.59996 3.14405 0.17746 38 - -
1217 1.38629 1.38629 1.38629 1.38629
1218 0.03673 4.01570 4.01570 1.46634 0.26236 1.09861 0.40547
1219 39 2.95275 3.59536 0.11633 3.50082 39 - -
1220 1.38629 1.38629 1.38629 1.38629
1221 0.03673 4.01570 4.01570 1.46634 0.26236 1.09861 0.40547
1222 40 3.09618 2.59996 3.14405 0.17746 40 - -
1223 1.38629 1.38629 1.38629 1.38629
1224 0.03673 4.01570 4.01570 1.46634 0.26236 1.09861 0.40547
1225 41 3.44175 0.12918 3.49084 2.83528 41 - -
1226 1.38629 1.38629 1.38629 1.38629
1227 0.03673 4.01570 4.01570 1.46634 0.26236 1.09861 0.40547
1228 42 3.44175 0.12918 3.49084 2.83528 42 - -
1229 1.38629 1.38629 1.38629 1.38629
1230 0.03673 4.01570 4.01570 1.46634 0.26236 1.09861 0.40547
1231 43 0.14091 3.38776 2.80679 3.29014 43 - -
1232 1.38629 1.38629 1.38629 1.38629
1233 0.03673 4.01570 4.01570 1.46634 0.26236 1.09861 0.40547
1234 44 2.55815 1.47151 2.62502 0.47717 44 - -
1235 1.38629 1.38629 1.38629 1.38629
1236 0.03673 4.01570 4.01570 1.46634 0.26236 1.09861 0.40547
1237 45 0.14091 3.38776 2.80679 3.29014 45 - -
1238 1.38629 1.38629 1.38629 1.38629
1239 0.01853 3.99750 * 1.46634 0.26236 0.00000 *
1240 //
1241 HMMER3/b [3.0 | March 2010]
1242 NAME 3_End_Oomycota_58S_end_fortyfive_long
1243 LENG 45
1244 ALPH DNA
1245 RF no
1246 CS no
1247 MAP yes
1248 DATE Mon Jan 23 23:10:31 2012
1249 NSEQ 32
1250 EFFN 3.292969
1251 CKSUM 950115204
1252 STATS LOCAL MSV -8.1199 0.71933
1253 STATS LOCAL VITERBI -7.9534 0.71933
1254 STATS LOCAL FORWARD -3.9017 0.71933
1255 HMM A C G T
1256 m->m m->i m->d i->m i->i d->m d->d
1257 COMPO 1.64328 1.19125 1.53972 1.24350
1258 1.38629 1.38629 1.38629 1.38629
1259 0.03709 4.00605 4.00605 1.46634 0.26236 0.00000 *
1260 1 3.42209 0.13153 3.47201 2.82097 1 - -
1261 1.38629 1.38629 1.38629 1.38629
1262 0.03709 4.00605 4.00605 1.46634 0.26236 1.09861 0.40547
1263 2 3.07897 2.58901 3.12749 0.18024 2 - -
1264 1.38629 1.38629 1.38629 1.38629
1265 0.03709 4.00605 4.00605 1.46634 0.26236 1.09861 0.40547
1266 3 3.07897 2.58901 3.12749 0.18024 3 - -
1267 1.38629 1.38629 1.38629 1.38629
1268 0.03709 4.00605 4.00605 1.46634 0.26236 1.09861 0.40547
1269 4 3.42209 0.13153 3.47201 2.82097 4 - -
1270 1.38629 1.38629 1.38629 1.38629
1271 0.03709 4.00605 4.00605 1.46634 0.26236 1.09861 0.40547
1272 5 3.07897 2.58901 3.12749 0.18024 5 - -
1273 1.38629 1.38629 1.38629 1.38629
1274 0.03709 4.00605 4.00605 1.46634 0.26236 1.09861 0.40547
1275 6 3.42209 0.13153 3.47201 2.82097 6 - -
1276 1.38629 1.38629 1.38629 1.38629
1277 0.03709 4.00605 4.00605 1.46634 0.26236 1.09861 0.40547
1278 7 2.94085 3.57805 0.11823 3.48171 7 - -
1279 1.38629 1.38629 1.38629 1.38629
1280 0.03709 4.00605 4.00605 1.46634 0.26236 1.09861 0.40547
1281 8 2.94085 3.57805 0.11823 3.48171 8 - -
1282 1.38629 1.38629 1.38629 1.38629
1283 0.03709 4.00605 4.00605 1.46634 0.26236 1.09861 0.40547
1284 9 2.94085 3.57805 0.11823 3.48171 9 - -
1285 1.38629 1.38629 1.38629 1.38629
1286 0.03709 4.00605 4.00605 1.46634 0.26236 1.09861 0.40547
1287 10 3.42209 0.13153 3.47201 2.82097 10 - -
1288 1.38629 1.38629 1.38629 1.38629
1289 0.03709 4.00605 4.00605 1.46634 0.26236 1.09861 0.40547
1290 11 3.07897 2.58901 3.12749 0.18024 11 - -
1291 1.38629 1.38629 1.38629 1.38629
1292 0.03709 4.00605 4.00605 1.46634 0.26236 1.09861 0.40547
1293 12 0.14316 3.37070 2.79571 3.27146 12 - -
1294 1.38629 1.38629 1.38629 1.38629
1295 0.03709 4.00605 4.00605 1.46634 0.26236 1.09861 0.40547
1296 13 2.94085 3.57805 0.11823 3.48171 13 - -
1297 1.38629 1.38629 1.38629 1.38629
1298 0.03709 4.00605 4.00605 1.46634 0.26236 1.09861 0.40547
1299 14 3.07897 2.58901 3.12749 0.18024 14 - -
1300 1.38629 1.38629 1.38629 1.38629
1301 0.03709 4.00605 4.00605 1.46634 0.26236 1.09861 0.40547
1302 15 3.42209 0.13153 3.47201 2.82097 15 - -
1303 1.38629 1.38629 1.38629 1.38629
1304 0.03709 4.00605 4.00605 1.46634 0.26236 1.09861 0.40547
1305 16 3.07897 2.58901 3.12749 0.18024 16 - -
1306 1.38629 1.38629 1.38629 1.38629
1307 0.03709 4.00605 4.00605 1.46634 0.26236 1.09861 0.40547
1308 17 3.42209 0.13153 3.47201 2.82097 17 - -
1309 1.38629 1.38629 1.38629 1.38629
1310 0.03709 4.00605 4.00605 1.46634 0.26236 1.09861 0.40547
1311 18 3.42209 0.13153 3.47201 2.82097 18 - -
1312 1.38629 1.38629 1.38629 1.38629
1313 0.03709 4.00605 4.00605 1.46634 0.26236 1.09861 0.40547
1314 19 3.07897 2.58901 3.12749 0.18024 19 - -
1315 1.38629 1.38629 1.38629 1.38629
1316 0.03709 4.00605 4.00605 1.46634 0.26236 1.09861 0.40547
1317 20 2.94085 3.57805 0.11823 3.48171 20 - -
1318 1.38629 1.38629 1.38629 1.38629
1319 0.03709 4.00605 4.00605 1.46634 0.26236 1.09861 0.40547
1320 21 0.14316 3.37070 2.79571 3.27146 21 - -
1321 1.38629 1.38629 1.38629 1.38629
1322 0.03709 4.00605 4.00605 1.46634 0.26236 1.09861 0.40547
1323 22 0.14316 3.37070 2.79571 3.27146 22 - -
1324 1.38629 1.38629 1.38629 1.38629
1325 0.03709 4.00605 4.00605 1.46634 0.26236 1.09861 0.40547
1326 23 2.94085 3.57805 0.11823 3.48171 23 - -
1327 1.38629 1.38629 1.38629 1.38629
1328 0.03709 4.00605 4.00605 1.46634 0.26236 1.09861 0.40547
1329 24 3.07897 2.58901 3.12749 0.18024 24 - -
1330 1.38629 1.38629 1.38629 1.38629
1331 0.03709 4.00605 4.00605 1.46634 0.26236 1.09861 0.40547
1332 25 0.14316 3.37070 2.79571 3.27146 25 - -
1333 1.38629 1.38629 1.38629 1.38629
1334 0.03709 4.00605 4.00605 1.46634 0.26236 1.09861 0.40547
1335 26 3.07897 2.58901 3.12749 0.18024 26 - -
1336 1.38629 1.38629 1.38629 1.38629
1337 0.03709 4.00605 4.00605 1.46634 0.26236 1.09861 0.40547
1338 27 2.94085 3.57805 0.11823 3.48171 27 - -
1339 1.38629 1.38629 1.38629 1.38629
1340 0.03709 4.00605 4.00605 1.46634 0.26236 1.09861 0.40547
1341 28 3.42209 0.13153 3.47201 2.82097 28 - -
1342 1.38629 1.38629 1.38629 1.38629
1343 0.03709 4.00605 4.00605 1.46634 0.26236 1.09861 0.40547
1344 29 3.42209 0.13153 3.47201 2.82097 29 - -
1345 1.38629 1.38629 1.38629 1.38629
1346 0.03709 4.00605 4.00605 1.46634 0.26236 1.09861 0.40547
1347 30 3.07897 2.58901 3.12749 0.18024 30 - -
1348 1.38629 1.38629 1.38629 1.38629
1349 0.03709 4.00605 4.00605 1.46634 0.26236 1.09861 0.40547
1350 31 3.42209 0.13153 3.47201 2.82097 31 - -
1351 1.38629 1.38629 1.38629 1.38629
1352 0.03709 4.00605 4.00605 1.46634 0.26236 1.09861 0.40547
1353 32 3.07897 2.58901 3.12749 0.18024 32 - -
1354 1.38629 1.38629 1.38629 1.38629
1355 0.03709 4.00605 4.00605 1.46634 0.26236 1.09861 0.40547
1356 33 0.14316 3.37070 2.79571 3.27146 33 - -
1357 1.38629 1.38629 1.38629 1.38629
1358 0.03709 4.00605 4.00605 1.46634 0.26236 1.09861 0.40547
1359 34 3.07897 2.58901 3.12749 0.18024 34 - -
1360 1.38629 1.38629 1.38629 1.38629
1361 0.03709 4.00605 4.00605 1.46634 0.26236 1.09861 0.40547
1362 35 3.42209 0.13153 3.47201 2.82097 35 - -
1363 1.38629 1.38629 1.38629 1.38629
1364 0.03709 4.00605 4.00605 1.46634 0.26236 1.09861 0.40547
1365 36 0.14316 3.37070 2.79571 3.27146 36 - -
1366 1.38629 1.38629 1.38629 1.38629
1367 0.03709 4.00605 4.00605 1.46634 0.26236 1.09861 0.40547
1368 37 2.94085 3.57805 0.11823 3.48171 37 - -
1369 1.38629 1.38629 1.38629 1.38629
1370 0.03709 4.00605 4.00605 1.46634 0.26236 1.09861 0.40547
1371 38 3.07897 2.58901 3.12749 0.18024 38 - -
1372 1.38629 1.38629 1.38629 1.38629
1373 0.03709 4.00605 4.00605 1.46634 0.26236 1.09861 0.40547
1374 39 2.94085 3.57805 0.11823 3.48171 39 - -
1375 1.38629 1.38629 1.38629 1.38629
1376 0.03709 4.00605 4.00605 1.46634 0.26236 1.09861 0.40547
1377 40 3.07897 2.58901 3.12749 0.18024 40 - -
1378 1.38629 1.38629 1.38629 1.38629
1379 0.03709 4.00605 4.00605 1.46634 0.26236 1.09861 0.40547
1380 41 3.42209 0.13153 3.47201 2.82097 41 - -
1381 1.38629 1.38629 1.38629 1.38629
1382 0.03709 4.00605 4.00605 1.46634 0.26236 1.09861 0.40547
1383 42 3.42209 0.13153 3.47201 2.82097 42 - -
1384 1.38629 1.38629 1.38629 1.38629
1385 0.03709 4.00605 4.00605 1.46634 0.26236 1.09861 0.40547
1386 43 0.14316 3.37070 2.79571 3.27146 43 - -
1387 1.38629 1.38629 1.38629 1.38629
1388 0.03709 4.00605 4.00605 1.46634 0.26236 1.09861 0.40547
1389 44 3.42209 0.13153 3.47201 2.82097 44 - -
1390 1.38629 1.38629 1.38629 1.38629
1391 0.03709 4.00605 4.00605 1.46634 0.26236 1.09861 0.40547
1392 45 0.14316 3.37070 2.79571 3.27146 45 - -
1393 1.38629 1.38629 1.38629 1.38629
1394 0.01872 3.98768 * 1.46634 0.26236 0.00000 *
1395 //
1396 HMMER3/b [3.0 | March 2010]
1397 NAME 3_End_Oomycota_58S_end_fortyfour_long
1398 LENG 45
1399 ALPH DNA
1400 RF no
1401 CS no
1402 MAP yes
1403 DATE Mon Jan 23 23:10:21 2012
1404 NSEQ 10
1405 EFFN 3.266602
1406 CKSUM 1629254486
1407 STATS LOCAL MSV -8.1952 0.71931
1408 STATS LOCAL VITERBI -7.8219 0.71931
1409 STATS LOCAL FORWARD -3.7929 0.71931
1410 HMM A C G T
1411 m->m m->i m->d i->m i->i d->m d->d
1412 COMPO 1.64193 1.19469 1.46172 1.30284
1413 1.38629 1.38629 1.38629 1.38629
1414 0.03727 4.00124 4.00124 1.46634 0.26236 0.00000 *
1415 1 3.41221 0.13273 3.46255 2.81376 1 - -
1416 1.38629 1.38629 1.38629 1.38629
1417 0.03727 4.00124 4.00124 1.46634 0.26236 1.09861 0.40547
1418 2 3.07035 2.58352 3.11920 0.18165 2 - -
1419 1.38629 1.38629 1.38629 1.38629
1420 0.03727 4.00124 4.00124 1.46634 0.26236 1.09861 0.40547
1421 3 3.07035 2.58352 3.11920 0.18165 3 - -
1422 1.38629 1.38629 1.38629 1.38629
1423 0.03727 4.00124 4.00124 1.46634 0.26236 1.09861 0.40547
1424 4 3.41221 0.13273 3.46255 2.81376 4 - -
1425 1.38629 1.38629 1.38629 1.38629
1426 0.03727 4.00124 4.00124 1.46634 0.26236 1.09861 0.40547
1427 5 3.41221 0.13273 3.46255 2.81376 5 - -
1428 1.38629 1.38629 1.38629 1.38629
1429 0.03727 4.00124 4.00124 1.46634 0.26236 1.09861 0.40547
1430 6 3.07035 2.58352 3.11920 0.18165 6 - -
1431 1.38629 1.38629 1.38629 1.38629
1432 0.03727 4.00124 4.00124 1.46634 0.26236 1.09861 0.40547
1433 7 2.93484 3.56933 0.11920 3.47210 7 - -
1434 1.38629 1.38629 1.38629 1.38629
1435 0.03727 4.00124 4.00124 1.46634 0.26236 1.09861 0.40547
1436 8 2.93484 3.56933 0.11920 3.47210 8 - -
1437 1.38629 1.38629 1.38629 1.38629
1438 0.03727 4.00124 4.00124 1.46634 0.26236 1.09861 0.40547
1439 9 2.93484 3.56933 0.11920 3.47210 9 - -
1440 1.38629 1.38629 1.38629 1.38629
1441 0.03727 4.00124 4.00124 1.46634 0.26236 1.09861 0.40547
1442 10 3.41221 0.13273 3.46255 2.81376 10 - -
1443 1.38629 1.38629 1.38629 1.38629
1444 0.03727 4.00124 4.00124 1.46634 0.26236 1.09861 0.40547
1445 11 3.07035 2.58352 3.11920 0.18165 11 - -
1446 1.38629 1.38629 1.38629 1.38629
1447 0.03727 4.00124 4.00124 1.46634 0.26236 1.09861 0.40547
1448 12 0.14431 3.36214 2.79014 3.26209 12 - -
1449 1.38629 1.38629 1.38629 1.38629
1450 0.03727 4.00124 4.00124 1.46634 0.26236 1.09861 0.40547
1451 13 2.93484 3.56933 0.11920 3.47210 13 - -
1452 1.38629 1.38629 1.38629 1.38629
1453 0.03727 4.00124 4.00124 1.46634 0.26236 1.09861 0.40547
1454 14 3.07035 2.58352 3.11920 0.18165 14 - -
1455 1.38629 1.38629 1.38629 1.38629
1456 0.03727 4.00124 4.00124 1.46634 0.26236 1.09861 0.40547
1457 15 3.41221 0.13273 3.46255 2.81376 15 - -
1458 1.38629 1.38629 1.38629 1.38629
1459 0.03727 4.00124 4.00124 1.46634 0.26236 1.09861 0.40547
1460 16 3.07035 2.58352 3.11920 0.18165 16 - -
1461 1.38629 1.38629 1.38629 1.38629
1462 0.03727 4.00124 4.00124 1.46634 0.26236 1.09861 0.40547
1463 17 3.41221 0.13273 3.46255 2.81376 17 - -
1464 1.38629 1.38629 1.38629 1.38629
1465 0.03727 4.00124 4.00124 1.46634 0.26236 1.09861 0.40547
1466 18 3.41221 0.13273 3.46255 2.81376 18 - -
1467 1.38629 1.38629 1.38629 1.38629
1468 0.03727 4.00124 4.00124 1.46634 0.26236 1.09861 0.40547
1469 19 2.93484 3.56933 0.11920 3.47210 19 - -
1470 1.38629 1.38629 1.38629 1.38629
1471 0.03727 4.00124 4.00124 1.46634 0.26236 1.09861 0.40547
1472 20 2.93484 3.56933 0.11920 3.47210 20 - -
1473 1.38629 1.38629 1.38629 1.38629
1474 0.03727 4.00124 4.00124 1.46634 0.26236 1.09861 0.40547
1475 21 0.14431 3.36214 2.79014 3.26209 21 - -
1476 1.38629 1.38629 1.38629 1.38629
1477 0.03727 4.00124 4.00124 1.46634 0.26236 1.09861 0.40547
1478 22 0.14431 3.36214 2.79014 3.26209 22 - -
1479 1.38629 1.38629 1.38629 1.38629
1480 0.03727 4.00124 4.00124 1.46634 0.26236 1.09861 0.40547
1481 23 2.93484 3.56933 0.11920 3.47210 23 - -
1482 1.38629 1.38629 1.38629 1.38629
1483 0.03727 4.00124 4.00124 1.46634 0.26236 1.09861 0.40547
1484 24 3.07035 2.58352 3.11920 0.18165 24 - -
1485 1.38629 1.38629 1.38629 1.38629
1486 0.03727 4.00124 4.00124 1.46634 0.26236 1.09861 0.40547
1487 25 0.14431 3.36214 2.79014 3.26209 25 - -
1488 1.38629 1.38629 1.38629 1.38629
1489 0.03727 4.00124 4.00124 1.46634 0.26236 1.09861 0.40547
1490 26 3.07035 2.58352 3.11920 0.18165 26 - -
1491 1.38629 1.38629 1.38629 1.38629
1492 0.03727 4.00124 4.00124 1.46634 0.26236 1.09861 0.40547
1493 27 2.93484 3.56933 0.11920 3.47210 27 - -
1494 1.38629 1.38629 1.38629 1.38629
1495 0.03727 4.00124 4.00124 1.46634 0.26236 1.09861 0.40547
1496 28 3.41221 0.13273 3.46255 2.81376 28 - -
1497 1.38629 1.38629 1.38629 1.38629
1498 0.03727 4.00124 4.00124 1.46634 0.26236 1.09861 0.40547
1499 29 3.41221 0.13273 3.46255 2.81376 29 - -
1500 1.38629 1.38629 1.38629 1.38629
1501 0.03727 4.00124 4.00124 1.46634 0.26236 1.09861 0.40547
1502 30 3.07035 2.58352 3.11920 0.18165 30 - -
1503 1.38629 1.38629 1.38629 1.38629
1504 0.03727 4.00124 4.00124 1.46634 0.26236 1.09861 0.40547
1505 31 3.41221 0.13273 3.46255 2.81376 31 - -
1506 1.38629 1.38629 1.38629 1.38629
1507 0.03727 4.00124 4.00124 1.46634 0.26236 1.09861 0.40547
1508 32 3.07035 2.58352 3.11920 0.18165 32 - -
1509 1.38629 1.38629 1.38629 1.38629
1510 0.03727 4.00124 4.00124 1.46634 0.26236 1.09861 0.40547
1511 33 0.14431 3.36214 2.79014 3.26209 33 - -
1512 1.38629 1.38629 1.38629 1.38629
1513 0.03727 4.00124 4.00124 1.46634 0.26236 1.09861 0.40547
1514 34 3.07035 2.58352 3.11920 0.18165 34 - -
1515 1.38629 1.38629 1.38629 1.38629
1516 0.03727 4.00124 4.00124 1.46634 0.26236 1.09861 0.40547
1517 35 3.41221 0.13273 3.46255 2.81376 35 - -
1518 1.38629 1.38629 1.38629 1.38629
1519 0.03727 4.00124 4.00124 1.46634 0.26236 1.09861 0.40547
1520 36 0.14431 3.36214 2.79014 3.26209 36 - -
1521 1.38629 1.38629 1.38629 1.38629
1522 0.03727 4.00124 4.00124 1.46634 0.26236 1.09861 0.40547
1523 37 2.93484 3.56933 0.11920 3.47210 37 - -
1524 1.38629 1.38629 1.38629 1.38629
1525 0.03727 4.00124 4.00124 1.46634 0.26236 1.09861 0.40547
1526 38 3.07035 2.58352 3.11920 0.18165 38 - -
1527 1.38629 1.38629 1.38629 1.38629
1528 0.03727 4.00124 4.00124 1.46634 0.26236 1.09861 0.40547
1529 39 2.93484 3.56933 0.11920 3.47210 39 - -
1530 1.38629 1.38629 1.38629 1.38629
1531 0.03727 4.00124 4.00124 1.46634 0.26236 1.09861 0.40547
1532 40 3.07035 2.58352 3.11920 0.18165 40 - -
1533 1.38629 1.38629 1.38629 1.38629
1534 0.03727 4.00124 4.00124 1.46634 0.26236 1.09861 0.40547
1535 41 3.41221 0.13273 3.46255 2.81376 41 - -
1536 1.38629 1.38629 1.38629 1.38629
1537 0.03727 4.00124 4.00124 1.46634 0.26236 1.09861 0.40547
1538 42 3.41221 0.13273 3.46255 2.81376 42 - -
1539 1.38629 1.38629 1.38629 1.38629
1540 0.03727 4.00124 4.00124 1.46634 0.26236 1.09861 0.40547
1541 43 0.14431 3.36214 2.79014 3.26209 43 - -
1542 1.38629 1.38629 1.38629 1.38629
1543 0.03727 4.00124 4.00124 1.46634 0.26236 1.09861 0.40547
1544 44 3.41221 0.13273 3.46255 2.81376 44 - -
1545 1.38629 1.38629 1.38629 1.38629
1546 0.03727 4.00124 4.00124 1.46634 0.26236 1.09861 0.40547
1547 45 0.14431 3.36214 2.79014 3.26209 45 - -
1548 1.38629 1.38629 1.38629 1.38629
1549 0.01881 3.98278 * 1.46634 0.26236 0.00000 *
1550 //
1551 HMMER3/b [3.0 | March 2010]
1552 NAME 3_End_Oomycota_58S_end_fortynine_long
1553 LENG 45
1554 ALPH DNA
1555 RF no
1556 CS no
1557 MAP yes
1558 DATE Mon Jan 23 23:11:14 2012
1559 NSEQ 77
1560 EFFN 3.501282
1561 CKSUM 2729618959
1562 STATS LOCAL MSV -7.5473 0.71934
1563 STATS LOCAL VITERBI -7.7199 0.71934
1564 STATS LOCAL FORWARD -3.9750 0.71934
1565 HMM A C G T
1566 m->m m->i m->d i->m i->i d->m d->d
1567 COMPO 1.55389 1.28430 1.53341 1.21762
1568 1.38629 1.38629 1.38629 1.38629
1569 0.03571 4.04328 4.04328 1.46634 0.26236 0.00000 *
1570 1 3.49696 0.12284 3.54366 2.87525 1 - -
1571 1.38629 1.38629 1.38629 1.38629
1572 0.03571 4.04328 4.04328 1.46634 0.26236 1.09861 0.40547
1573 2 3.14500 2.63096 3.19098 0.16985 2 - -
1574 1.38629 1.38629 1.38629 1.38629
1575 0.03571 4.04328 4.04328 1.46634 0.26236 1.09861 0.40547
1576 3 3.14500 2.63096 3.19098 0.16985 3 - -
1577 1.38629 1.38629 1.38629 1.38629
1578 0.03571 4.04328 4.04328 1.46634 0.26236 1.09861 0.40547
1579 4 3.49696 0.12284 3.54366 2.87525 4 - -
1580 1.38629 1.38629 1.38629 1.38629
1581 0.03571 4.04328 4.04328 1.46634 0.26236 1.09861 0.40547
1582 5 3.14500 2.63096 3.19098 0.16985 5 - -
1583 1.38629 1.38629 1.38629 1.38629
1584 0.03571 4.04328 4.04328 1.46634 0.26236 1.09861 0.40547
1585 6 3.14500 2.63096 3.19098 0.16985 6 - -
1586 1.38629 1.38629 1.38629 1.38629
1587 0.03571 4.04328 4.04328 1.46634 0.26236 1.09861 0.40547
1588 7 2.98586 3.64378 0.11121 3.55433 7 - -
1589 1.38629 1.38629 1.38629 1.38629
1590 0.03571 4.04328 4.04328 1.46634 0.26236 1.09861 0.40547
1591 8 2.98586 3.64378 0.11121 3.55433 8 - -
1592 1.38629 1.38629 1.38629 1.38629
1593 0.03571 4.04328 4.04328 1.46634 0.26236 1.09861 0.40547
1594 9 2.98586 3.64378 0.11121 3.55433 9 - -
1595 1.38629 1.38629 1.38629 1.38629
1596 0.03571 4.04328 4.04328 1.46634 0.26236 1.09861 0.40547
1597 10 2.74372 0.38620 2.81168 1.62999 10 - -
1598 1.38629 1.38629 1.38629 1.38629
1599 0.03571 4.04328 4.04328 1.46634 0.26236 1.09861 0.40547
1600 11 3.14500 2.63096 3.19098 0.16985 11 - -
1601 1.38629 1.38629 1.38629 1.38629
1602 0.03571 4.04328 4.04328 1.46634 0.26236 1.09861 0.40547
1603 12 0.13478 3.43577 2.83786 3.34275 12 - -
1604 1.38629 1.38629 1.38629 1.38629
1605 0.03571 4.04328 4.04328 1.46634 0.26236 1.09861 0.40547
1606 13 2.98586 3.64378 0.11121 3.55433 13 - -
1607 1.38629 1.38629 1.38629 1.38629
1608 0.03571 4.04328 4.04328 1.46634 0.26236 1.09861 0.40547
1609 14 3.14500 2.63096 3.19098 0.16985 14 - -
1610 1.38629 1.38629 1.38629 1.38629
1611 0.03571 4.04328 4.04328 1.46634 0.26236 1.09861 0.40547
1612 15 3.49696 0.12284 3.54366 2.87525 15 - -
1613 1.38629 1.38629 1.38629 1.38629
1614 0.03571 4.04328 4.04328 1.46634 0.26236 1.09861 0.40547
1615 16 3.49696 0.12284 3.54366 2.87525 16 - -
1616 1.38629 1.38629 1.38629 1.38629
1617 0.03571 4.04328 4.04328 1.46634 0.26236 1.09861 0.40547
1618 17 3.14500 2.63096 3.19098 0.16985 17 - -
1619 1.38629 1.38629 1.38629 1.38629
1620 0.03571 4.04328 4.04328 1.46634 0.26236 1.09861 0.40547
1621 18 0.13478 3.43577 2.83786 3.34275 18 - -
1622 1.38629 1.38629 1.38629 1.38629
1623 0.03571 4.04328 4.04328 1.46634 0.26236 1.09861 0.40547
1624 19 3.49696 0.12284 3.54366 2.87525 19 - -
1625 1.38629 1.38629 1.38629 1.38629
1626 0.03571 4.04328 4.04328 1.46634 0.26236 1.09861 0.40547
1627 20 2.98586 3.64378 0.11121 3.55433 20 - -
1628 1.38629 1.38629 1.38629 1.38629
1629 0.03571 4.04328 4.04328 1.46634 0.26236 1.09861 0.40547
1630 21 0.13478 3.43577 2.83786 3.34275 21 - -
1631 1.38629 1.38629 1.38629 1.38629
1632 0.03571 4.04328 4.04328 1.46634 0.26236 1.09861 0.40547
1633 22 0.13478 3.43577 2.83786 3.34275 22 - -
1634 1.38629 1.38629 1.38629 1.38629
1635 0.03571 4.04328 4.04328 1.46634 0.26236 1.09861 0.40547
1636 23 2.98586 3.64378 0.11121 3.55433 23 - -
1637 1.38629 1.38629 1.38629 1.38629
1638 0.03571 4.04328 4.04328 1.46634 0.26236 1.09861 0.40547
1639 24 3.14500 2.63096 3.19098 0.16985 24 - -
1640 1.38629 1.38629 1.38629 1.38629
1641 0.03571 4.04328 4.04328 1.46634 0.26236 1.09861 0.40547
1642 25 0.13478 3.43577 2.83786 3.34275 25 - -
1643 1.38629 1.38629 1.38629 1.38629
1644 0.03571 4.04328 4.04328 1.46634 0.26236 1.09861 0.40547
1645 26 3.14500 2.63096 3.19098 0.16985 26 - -
1646 1.38629 1.38629 1.38629 1.38629
1647 0.03571 4.04328 4.04328 1.46634 0.26236 1.09861 0.40547
1648 27 2.98586 3.64378 0.11121 3.55433 27 - -
1649 1.38629 1.38629 1.38629 1.38629
1650 0.03571 4.04328 4.04328 1.46634 0.26236 1.09861 0.40547
1651 28 3.49696 0.12284 3.54366 2.87525 28 - -
1652 1.38629 1.38629 1.38629 1.38629
1653 0.03571 4.04328 4.04328 1.46634 0.26236 1.09861 0.40547
1654 29 3.49696 0.12284 3.54366 2.87525 29 - -
1655 1.38629 1.38629 1.38629 1.38629
1656 0.03571 4.04328 4.04328 1.46634 0.26236 1.09861 0.40547
1657 30 3.14500 2.63096 3.19098 0.16985 30 - -
1658 1.38629 1.38629 1.38629 1.38629
1659 0.03571 4.04328 4.04328 1.46634 0.26236 1.09861 0.40547
1660 31 3.49696 0.12284 3.54366 2.87525 31 - -
1661 1.38629 1.38629 1.38629 1.38629
1662 0.03571 4.04328 4.04328 1.46634 0.26236 1.09861 0.40547
1663 32 3.14500 2.63096 3.19098 0.16985 32 - -
1664 1.38629 1.38629 1.38629 1.38629
1665 0.03571 4.04328 4.04328 1.46634 0.26236 1.09861 0.40547
1666 33 0.13478 3.43577 2.83786 3.34275 33 - -
1667 1.38629 1.38629 1.38629 1.38629
1668 0.03571 4.04328 4.04328 1.46634 0.26236 1.09861 0.40547
1669 34 3.14500 2.63096 3.19098 0.16985 34 - -
1670 1.38629 1.38629 1.38629 1.38629
1671 0.03571 4.04328 4.04328 1.46634 0.26236 1.09861 0.40547
1672 35 3.49696 0.12284 3.54366 2.87525 35 - -
1673 1.38629 1.38629 1.38629 1.38629
1674 0.03571 4.04328 4.04328 1.46634 0.26236 1.09861 0.40547
1675 36 0.13478 3.43577 2.83786 3.34275 36 - -
1676 1.38629 1.38629 1.38629 1.38629
1677 0.03571 4.04328 4.04328 1.46634 0.26236 1.09861 0.40547
1678 37 2.98586 3.64378 0.11121 3.55433 37 - -
1679 1.38629 1.38629 1.38629 1.38629
1680 0.03571 4.04328 4.04328 1.46634 0.26236 1.09861 0.40547
1681 38 3.14500 2.63096 3.19098 0.16985 38 - -
1682 1.38629 1.38629 1.38629 1.38629
1683 0.03571 4.04328 4.04328 1.46634 0.26236 1.09861 0.40547
1684 39 2.98586 3.64378 0.11121 3.55433 39 - -
1685 1.38629 1.38629 1.38629 1.38629
1686 0.03571 4.04328 4.04328 1.46634 0.26236 1.09861 0.40547
1687 40 3.14500 2.63096 3.19098 0.16985 40 - -
1688 1.38629 1.38629 1.38629 1.38629
1689 0.03571 4.04328 4.04328 1.46634 0.26236 1.09861 0.40547
1690 41 3.49696 0.12284 3.54366 2.87525 41 - -
1691 1.38629 1.38629 1.38629 1.38629
1692 0.03571 4.04328 4.04328 1.46634 0.26236 1.09861 0.40547
1693 42 3.49696 0.12284 3.54366 2.87525 42 - -
1694 1.38629 1.38629 1.38629 1.38629
1695 0.03571 4.04328 4.04328 1.46634 0.26236 1.09861 0.40547
1696 43 0.13478 3.43577 2.83786 3.34275 43 - -
1697 1.38629 1.38629 1.38629 1.38629
1698 0.03571 4.04328 4.04328 1.46634 0.26236 1.09861 0.40547
1699 44 2.58677 0.51901 2.65746 1.34899 44 - -
1700 1.38629 1.38629 1.38629 1.38629
1701 0.03571 4.04328 4.04328 1.46634 0.26236 1.09861 0.40547
1702 45 0.13478 3.43577 2.83786 3.34275 45 - -
1703 1.38629 1.38629 1.38629 1.38629
1704 0.01801 4.02558 * 1.46634 0.26236 0.00000 *
1705 //
1706 HMMER3/b [3.0 | March 2010]
1707 NAME 3_End_Oomycota_58S_end_fortyone_long
1708 LENG 45
1709 ALPH DNA
1710 RF no
1711 CS no
1712 MAP yes
1713 DATE Mon Jan 23 23:09:53 2012
1714 NSEQ 13
1715 EFFN 3.570557
1716 CKSUM 2743763495
1717 STATS LOCAL MSV -7.4127 0.71933
1718 STATS LOCAL VITERBI -7.7019 0.71933
1719 STATS LOCAL FORWARD -3.6164 0.71933
1720 HMM A C G T
1721 m->m m->i m->d i->m i->i d->m d->d
1722 COMPO 1.66856 1.57761 1.29461 1.10561
1723 1.38629 1.38629 1.38629 1.38629
1724 0.03527 4.05535 4.05535 1.46634 0.26236 0.00000 *
1725 1 2.99995 3.66446 0.10910 3.57724 1 - -
1726 1.38629 1.38629 1.38629 1.38629
1727 0.03527 4.05535 4.05535 1.46634 0.26236 1.09861 0.40547
1728 2 3.52065 0.12024 3.56632 2.89230 2 - -
1729 1.38629 1.38629 1.38629 1.38629
1730 0.03527 4.05535 4.05535 1.46634 0.26236 1.09861 0.40547
1731 3 0.13224 3.45644 2.85118 3.36541 3 - -
1732 1.38629 1.38629 1.38629 1.38629
1733 0.03527 4.05535 4.05535 1.46634 0.26236 1.09861 0.40547
1734 4 3.52065 0.12024 3.56632 2.89230 4 - -
1735 1.38629 1.38629 1.38629 1.38629
1736 0.03527 4.05535 4.05535 1.46634 0.26236 1.09861 0.40547
1737 5 3.16617 2.64439 3.21133 0.16666 5 - -
1738 1.38629 1.38629 1.38629 1.38629
1739 0.03527 4.05535 4.05535 1.46634 0.26236 1.09861 0.40547
1740 6 3.16617 2.64439 3.21133 0.16666 6 - -
1741 1.38629 1.38629 1.38629 1.38629
1742 0.03527 4.05535 4.05535 1.46634 0.26236 1.09861 0.40547
1743 7 2.50299 1.21696 2.57233 0.60573 7 - -
1744 1.38629 1.38629 1.38629 1.38629
1745 0.03527 4.05535 4.05535 1.46634 0.26236 1.09861 0.40547
1746 8 3.52065 0.12024 3.56632 2.89230 8 - -
1747 1.38629 1.38629 1.38629 1.38629
1748 0.03527 4.05535 4.05535 1.46634 0.26236 1.09861 0.40547
1749 9 2.99995 3.66446 0.10910 3.57724 9 - -
1750 1.38629 1.38629 1.38629 1.38629
1751 0.03527 4.05535 4.05535 1.46634 0.26236 1.09861 0.40547
1752 10 2.99995 3.66446 0.10910 3.57724 10 - -
1753 1.38629 1.38629 1.38629 1.38629
1754 0.03527 4.05535 4.05535 1.46634 0.26236 1.09861 0.40547
1755 11 2.99995 3.66446 0.10910 3.57724 11 - -
1756 1.38629 1.38629 1.38629 1.38629
1757 0.03527 4.05535 4.05535 1.46634 0.26236 1.09861 0.40547
1758 12 3.16617 2.64439 3.21133 0.16666 12 - -
1759 1.38629 1.38629 1.38629 1.38629
1760 0.03527 4.05535 4.05535 1.46634 0.26236 1.09861 0.40547
1761 13 0.13224 3.45644 2.85118 3.36541 13 - -
1762 1.38629 1.38629 1.38629 1.38629
1763 0.03527 4.05535 4.05535 1.46634 0.26236 1.09861 0.40547
1764 14 3.16617 2.64439 3.21133 0.16666 14 - -
1765 1.38629 1.38629 1.38629 1.38629
1766 0.03527 4.05535 4.05535 1.46634 0.26236 1.09861 0.40547
1767 15 3.16617 2.64439 3.21133 0.16666 15 - -
1768 1.38629 1.38629 1.38629 1.38629
1769 0.03527 4.05535 4.05535 1.46634 0.26236 1.09861 0.40547
1770 16 3.52065 0.12024 3.56632 2.89230 16 - -
1771 1.38629 1.38629 1.38629 1.38629
1772 0.03527 4.05535 4.05535 1.46634 0.26236 1.09861 0.40547
1773 17 3.52065 0.12024 3.56632 2.89230 17 - -
1774 1.38629 1.38629 1.38629 1.38629
1775 0.03527 4.05535 4.05535 1.46634 0.26236 1.09861 0.40547
1776 18 3.16617 2.64439 3.21133 0.16666 18 - -
1777 1.38629 1.38629 1.38629 1.38629
1778 0.03527 4.05535 4.05535 1.46634 0.26236 1.09861 0.40547
1779 19 2.99995 3.66446 0.10910 3.57724 19 - -
1780 1.38629 1.38629 1.38629 1.38629
1781 0.03527 4.05535 4.05535 1.46634 0.26236 1.09861 0.40547
1782 20 2.99995 3.66446 0.10910 3.57724 20 - -
1783 1.38629 1.38629 1.38629 1.38629
1784 0.03527 4.05535 4.05535 1.46634 0.26236 1.09861 0.40547
1785 21 0.60012 2.61486 1.22476 2.47401 21 - -
1786 1.38629 1.38629 1.38629 1.38629
1787 0.03527 4.05535 4.05535 1.46634 0.26236 1.09861 0.40547
1788 22 0.13224 3.45644 2.85118 3.36541 22 - -
1789 1.38629 1.38629 1.38629 1.38629
1790 0.03527 4.05535 4.05535 1.46634 0.26236 1.09861 0.40547
1791 23 2.99995 3.66446 0.10910 3.57724 23 - -
1792 1.38629 1.38629 1.38629 1.38629
1793 0.03527 4.05535 4.05535 1.46634 0.26236 1.09861 0.40547
1794 24 3.16617 2.64439 3.21133 0.16666 24 - -
1795 1.38629 1.38629 1.38629 1.38629
1796 0.03527 4.05535 4.05535 1.46634 0.26236 1.09861 0.40547
1797 25 0.13224 3.45644 2.85118 3.36541 25 - -
1798 1.38629 1.38629 1.38629 1.38629
1799 0.03527 4.05535 4.05535 1.46634 0.26236 1.09861 0.40547
1800 26 3.16617 2.64439 3.21133 0.16666 26 - -
1801 1.38629 1.38629 1.38629 1.38629
1802 0.03527 4.05535 4.05535 1.46634 0.26236 1.09861 0.40547
1803 27 2.99995 3.66446 0.10910 3.57724 27 - -
1804 1.38629 1.38629 1.38629 1.38629
1805 0.03527 4.05535 4.05535 1.46634 0.26236 1.09861 0.40547
1806 28 3.52065 0.12024 3.56632 2.89230 28 - -
1807 1.38629 1.38629 1.38629 1.38629
1808 0.03527 4.05535 4.05535 1.46634 0.26236 1.09861 0.40547
1809 29 3.16617 2.64439 3.21133 0.16666 29 - -
1810 1.38629 1.38629 1.38629 1.38629
1811 0.03527 4.05535 4.05535 1.46634 0.26236 1.09861 0.40547
1812 30 3.16617 2.64439 3.21133 0.16666 30 - -
1813 1.38629 1.38629 1.38629 1.38629
1814 0.03527 4.05535 4.05535 1.46634 0.26236 1.09861 0.40547
1815 31 2.99995 3.66446 0.10910 3.57724 31 - -
1816 1.38629 1.38629 1.38629 1.38629
1817 0.03527 4.05535 4.05535 1.46634 0.26236 1.09861 0.40547
1818 32 3.16617 2.64439 3.21133 0.16666 32 - -
1819 1.38629 1.38629 1.38629 1.38629
1820 0.03527 4.05535 4.05535 1.46634 0.26236 1.09861 0.40547
1821 33 0.13224 3.45644 2.85118 3.36541 33 - -
1822 1.38629 1.38629 1.38629 1.38629
1823 0.03527 4.05535 4.05535 1.46634 0.26236 1.09861 0.40547
1824 34 3.16617 2.64439 3.21133 0.16666 34 - -
1825 1.38629 1.38629 1.38629 1.38629
1826 0.03527 4.05535 4.05535 1.46634 0.26236 1.09861 0.40547
1827 35 3.52065 0.12024 3.56632 2.89230 35 - -
1828 1.38629 1.38629 1.38629 1.38629
1829 0.03527 4.05535 4.05535 1.46634 0.26236 1.09861 0.40547
1830 36 0.13224 3.45644 2.85118 3.36541 36 - -
1831 1.38629 1.38629 1.38629 1.38629
1832 0.03527 4.05535 4.05535 1.46634 0.26236 1.09861 0.40547
1833 37 2.99995 3.66446 0.10910 3.57724 37 - -
1834 1.38629 1.38629 1.38629 1.38629
1835 0.03527 4.05535 4.05535 1.46634 0.26236 1.09861 0.40547
1836 38 3.16617 2.64439 3.21133 0.16666 38 - -
1837 1.38629 1.38629 1.38629 1.38629
1838 0.03527 4.05535 4.05535 1.46634 0.26236 1.09861 0.40547
1839 39 2.99995 3.66446 0.10910 3.57724 39 - -
1840 1.38629 1.38629 1.38629 1.38629
1841 0.03527 4.05535 4.05535 1.46634 0.26236 1.09861 0.40547
1842 40 3.16617 2.64439 3.21133 0.16666 40 - -
1843 1.38629 1.38629 1.38629 1.38629
1844 0.03527 4.05535 4.05535 1.46634 0.26236 1.09861 0.40547
1845 41 3.52065 0.12024 3.56632 2.89230 41 - -
1846 1.38629 1.38629 1.38629 1.38629
1847 0.03527 4.05535 4.05535 1.46634 0.26236 1.09861 0.40547
1848 42 3.16617 2.64439 3.21133 0.16666 42 - -
1849 1.38629 1.38629 1.38629 1.38629
1850 0.03527 4.05535 4.05535 1.46634 0.26236 1.09861 0.40547
1851 43 2.99995 3.66446 0.10910 3.57724 43 - -
1852 1.38629 1.38629 1.38629 1.38629
1853 0.03527 4.05535 4.05535 1.46634 0.26236 1.09861 0.40547
1854 44 3.16617 2.64439 3.21133 0.16666 44 - -
1855 1.38629 1.38629 1.38629 1.38629
1856 0.03527 4.05535 4.05535 1.46634 0.26236 1.09861 0.40547
1857 45 0.13224 3.45644 2.85118 3.36541 45 - -
1858 1.38629 1.38629 1.38629 1.38629
1859 0.01779 4.03787 * 1.46634 0.26236 0.00000 *
1860 //
1861 HMMER3/b [3.0 | March 2010]
1862 NAME 3_End_Oomycota_58S_end_fortyseven_long
1863 LENG 45
1864 ALPH DNA
1865 RF no
1866 CS no
1867 MAP yes
1868 DATE Mon Jan 23 23:10:52 2012
1869 NSEQ 3
1870 EFFN 3.000000
1871 CKSUM 3214309007
1872 STATS LOCAL MSV -7.9945 0.72035
1873 STATS LOCAL VITERBI -7.7983 0.72035
1874 STATS LOCAL FORWARD -3.8773 0.72035
1875 HMM A C G T
1876 m->m m->i m->d i->m i->i d->m d->d
1877 COMPO 1.47802 1.26112 1.45372 1.36699
1878 1.38629 1.38629 1.38629 1.38629
1879 0.03922 3.95124 3.95124 1.46634 0.26236 0.00000 *
1880 1 2.97980 2.52563 3.03204 0.19727 1 - -
1881 1.38629 1.38629 1.38629 1.38629
1882 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
1883 2 2.97980 2.52563 3.03204 0.19727 2 - -
1884 1.38629 1.38629 1.38629 1.38629
1885 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
1886 3 3.30705 0.14631 3.36166 2.73626 3 - -
1887 1.38629 1.38629 1.38629 1.38629
1888 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
1889 4 3.30705 0.14631 3.36166 2.73626 4 - -
1890 1.38629 1.38629 1.38629 1.38629
1891 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
1892 5 2.86982 3.47591 0.13017 3.36931 5 - -
1893 1.38629 1.38629 1.38629 1.38629
1894 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
1895 6 2.86982 3.47591 0.13017 3.36931 6 - -
1896 1.38629 1.38629 1.38629 1.38629
1897 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
1898 7 2.86982 3.47591 0.13017 3.36931 7 - -
1899 1.38629 1.38629 1.38629 1.38629
1900 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
1901 8 2.86982 3.47591 0.13017 3.36931 8 - -
1902 1.38629 1.38629 1.38629 1.38629
1903 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
1904 9 3.30705 0.14631 3.36166 2.73626 9 - -
1905 1.38629 1.38629 1.38629 1.38629
1906 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
1907 10 2.97980 2.52563 3.03204 0.19727 10 - -
1908 1.38629 1.38629 1.38629 1.38629
1909 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
1910 11 0.15719 3.27118 2.73043 3.16274 11 - -
1911 1.38629 1.38629 1.38629 1.38629
1912 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
1913 12 2.86982 3.47591 0.13017 3.36931 12 - -
1914 1.38629 1.38629 1.38629 1.38629
1915 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
1916 13 0.15719 3.27118 2.73043 3.16274 13 - -
1917 1.38629 1.38629 1.38629 1.38629
1918 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
1919 14 2.97980 2.52563 3.03204 0.19727 14 - -
1920 1.38629 1.38629 1.38629 1.38629
1921 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
1922 15 3.30705 0.14631 3.36166 2.73626 15 - -
1923 1.38629 1.38629 1.38629 1.38629
1924 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
1925 16 3.30705 0.14631 3.36166 2.73626 16 - -
1926 1.38629 1.38629 1.38629 1.38629
1927 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
1928 17 2.97980 2.52563 3.03204 0.19727 17 - -
1929 1.38629 1.38629 1.38629 1.38629
1930 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
1931 18 3.30705 0.14631 3.36166 2.73626 18 - -
1932 1.38629 1.38629 1.38629 1.38629
1933 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
1934 19 0.15719 3.27118 2.73043 3.16274 19 - -
1935 1.38629 1.38629 1.38629 1.38629
1936 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
1937 20 2.86982 3.47591 0.13017 3.36931 20 - -
1938 1.38629 1.38629 1.38629 1.38629
1939 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
1940 21 0.15719 3.27118 2.73043 3.16274 21 - -
1941 1.38629 1.38629 1.38629 1.38629
1942 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
1943 22 0.15719 3.27118 2.73043 3.16274 22 - -
1944 1.38629 1.38629 1.38629 1.38629
1945 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
1946 23 2.86982 3.47591 0.13017 3.36931 23 - -
1947 1.38629 1.38629 1.38629 1.38629
1948 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
1949 24 2.97980 2.52563 3.03204 0.19727 24 - -
1950 1.38629 1.38629 1.38629 1.38629
1951 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
1952 25 0.15719 3.27118 2.73043 3.16274 25 - -
1953 1.38629 1.38629 1.38629 1.38629
1954 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
1955 26 2.97980 2.52563 3.03204 0.19727 26 - -
1956 1.38629 1.38629 1.38629 1.38629
1957 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
1958 27 2.86982 3.47591 0.13017 3.36931 27 - -
1959 1.38629 1.38629 1.38629 1.38629
1960 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
1961 28 3.30705 0.14631 3.36166 2.73626 28 - -
1962 1.38629 1.38629 1.38629 1.38629
1963 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
1964 29 3.30705 0.14631 3.36166 2.73626 29 - -
1965 1.38629 1.38629 1.38629 1.38629
1966 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
1967 30 2.97980 2.52563 3.03204 0.19727 30 - -
1968 1.38629 1.38629 1.38629 1.38629
1969 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
1970 31 3.30705 0.14631 3.36166 2.73626 31 - -
1971 1.38629 1.38629 1.38629 1.38629
1972 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
1973 32 2.97980 2.52563 3.03204 0.19727 32 - -
1974 1.38629 1.38629 1.38629 1.38629
1975 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
1976 33 0.15719 3.27118 2.73043 3.16274 33 - -
1977 1.38629 1.38629 1.38629 1.38629
1978 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
1979 34 2.97980 2.52563 3.03204 0.19727 34 - -
1980 1.38629 1.38629 1.38629 1.38629
1981 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
1982 35 3.30705 0.14631 3.36166 2.73626 35 - -
1983 1.38629 1.38629 1.38629 1.38629
1984 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
1985 36 0.15719 3.27118 2.73043 3.16274 36 - -
1986 1.38629 1.38629 1.38629 1.38629
1987 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
1988 37 2.86982 3.47591 0.13017 3.36931 37 - -
1989 1.38629 1.38629 1.38629 1.38629
1990 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
1991 38 2.97980 2.52563 3.03204 0.19727 38 - -
1992 1.38629 1.38629 1.38629 1.38629
1993 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
1994 39 2.86982 3.47591 0.13017 3.36931 39 - -
1995 1.38629 1.38629 1.38629 1.38629
1996 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
1997 40 2.97980 2.52563 3.03204 0.19727 40 - -
1998 1.38629 1.38629 1.38629 1.38629
1999 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
2000 41 3.30705 0.14631 3.36166 2.73626 41 - -
2001 1.38629 1.38629 1.38629 1.38629
2002 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
2003 42 3.30705 0.14631 3.36166 2.73626 42 - -
2004 1.38629 1.38629 1.38629 1.38629
2005 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
2006 43 0.15719 3.27118 2.73043 3.16274 43 - -
2007 1.38629 1.38629 1.38629 1.38629
2008 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
2009 44 3.30705 0.14631 3.36166 2.73626 44 - -
2010 1.38629 1.38629 1.38629 1.38629
2011 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
2012 45 0.15719 3.27118 2.73043 3.16274 45 - -
2013 1.38629 1.38629 1.38629 1.38629
2014 0.01980 3.93183 * 1.46634 0.26236 0.00000 *
2015 //
2016 HMMER3/b [3.0 | March 2010]
2017 NAME 3_End_Oomycota_58S_end_fortysix_long
2018 LENG 45
2019 ALPH DNA
2020 RF no
2021 CS no
2022 MAP yes
2023 DATE Mon Jan 23 23:10:44 2012
2024 NSEQ 7
2025 EFFN 3.284668
2026 CKSUM 3559013258
2027 STATS LOCAL MSV -8.1480 0.71933
2028 STATS LOCAL VITERBI -7.6244 0.71933
2029 STATS LOCAL FORWARD -4.0846 0.71933
2030 HMM A C G T
2031 m->m m->i m->d i->m i->i d->m d->d
2032 COMPO 1.55436 1.38103 1.38462 1.24849
2033 1.38629 1.38629 1.38629 1.38629
2034 0.03715 4.00454 4.00454 1.46634 0.26236 0.00000 *
2035 1 3.07626 2.58729 3.12489 0.18068 1 - -
2036 1.38629 1.38629 1.38629 1.38629
2037 0.03715 4.00454 4.00454 1.46634 0.26236 1.09861 0.40547
2038 2 3.07626 2.58729 3.12489 0.18068 2 - -
2039 1.38629 1.38629 1.38629 1.38629
2040 0.03715 4.00454 4.00454 1.46634 0.26236 1.09861 0.40547
2041 3 3.41899 0.13190 3.46904 2.81871 3 - -
2042 1.38629 1.38629 1.38629 1.38629
2043 0.03715 4.00454 4.00454 1.46634 0.26236 1.09861 0.40547
2044 4 3.41899 0.13190 3.46904 2.81871 4 - -
2045 1.38629 1.38629 1.38629 1.38629
2046 0.03715 4.00454 4.00454 1.46634 0.26236 1.09861 0.40547
2047 5 2.93897 3.57531 0.11853 3.47870 5 - -
2048 1.38629 1.38629 1.38629 1.38629
2049 0.03715 4.00454 4.00454 1.46634 0.26236 1.09861 0.40547
2050 6 2.93897 3.57531 0.11853 3.47870 6 - -
2051 1.38629 1.38629 1.38629 1.38629
2052 0.03715 4.00454 4.00454 1.46634 0.26236 1.09861 0.40547
2053 7 2.93897 3.57531 0.11853 3.47870 7 - -
2054 1.38629 1.38629 1.38629 1.38629
2055 0.03715 4.00454 4.00454 1.46634 0.26236 1.09861 0.40547
2056 8 2.93897 3.57531 0.11853 3.47870 8 - -
2057 1.38629 1.38629 1.38629 1.38629
2058 0.03715 4.00454 4.00454 1.46634 0.26236 1.09861 0.40547
2059 9 3.41899 0.13190 3.46904 2.81871 9 - -
2060 1.38629 1.38629 1.38629 1.38629
2061 0.03715 4.00454 4.00454 1.46634 0.26236 1.09861 0.40547
2062 10 3.07626 2.58729 3.12489 0.18068 10 - -
2063 1.38629 1.38629 1.38629 1.38629
2064 0.03715 4.00454 4.00454 1.46634 0.26236 1.09861 0.40547
2065 11 0.14352 3.36802 2.79396 3.26852 11 - -
2066 1.38629 1.38629 1.38629 1.38629
2067 0.03715 4.00454 4.00454 1.46634 0.26236 1.09861 0.40547
2068 12 2.93897 3.57531 0.11853 3.47870 12 - -
2069 1.38629 1.38629 1.38629 1.38629
2070 0.03715 4.00454 4.00454 1.46634 0.26236 1.09861 0.40547
2071 13 0.14352 3.36802 2.79396 3.26852 13 - -
2072 1.38629 1.38629 1.38629 1.38629
2073 0.03715 4.00454 4.00454 1.46634 0.26236 1.09861 0.40547
2074 14 3.07626 2.58729 3.12489 0.18068 14 - -
2075 1.38629 1.38629 1.38629 1.38629
2076 0.03715 4.00454 4.00454 1.46634 0.26236 1.09861 0.40547
2077 15 3.41899 0.13190 3.46904 2.81871 15 - -
2078 1.38629 1.38629 1.38629 1.38629
2079 0.03715 4.00454 4.00454 1.46634 0.26236 1.09861 0.40547
2080 16 3.07626 2.58729 3.12489 0.18068 16 - -
2081 1.38629 1.38629 1.38629 1.38629
2082 0.03715 4.00454 4.00454 1.46634 0.26236 1.09861 0.40547
2083 17 3.07626 2.58729 3.12489 0.18068 17 - -
2084 1.38629 1.38629 1.38629 1.38629
2085 0.03715 4.00454 4.00454 1.46634 0.26236 1.09861 0.40547
2086 18 3.41899 0.13190 3.46904 2.81871 18 - -
2087 1.38629 1.38629 1.38629 1.38629
2088 0.03715 4.00454 4.00454 1.46634 0.26236 1.09861 0.40547
2089 19 2.93897 3.57531 0.11853 3.47870 19 - -
2090 1.38629 1.38629 1.38629 1.38629
2091 0.03715 4.00454 4.00454 1.46634 0.26236 1.09861 0.40547
2092 20 2.93897 3.57531 0.11853 3.47870 20 - -
2093 1.38629 1.38629 1.38629 1.38629
2094 0.03715 4.00454 4.00454 1.46634 0.26236 1.09861 0.40547
2095 21 0.14352 3.36802 2.79396 3.26852 21 - -
2096 1.38629 1.38629 1.38629 1.38629
2097 0.03715 4.00454 4.00454 1.46634 0.26236 1.09861 0.40547
2098 22 0.14352 3.36802 2.79396 3.26852 22 - -
2099 1.38629 1.38629 1.38629 1.38629
2100 0.03715 4.00454 4.00454 1.46634 0.26236 1.09861 0.40547
2101 23 2.93897 3.57531 0.11853 3.47870 23 - -
2102 1.38629 1.38629 1.38629 1.38629
2103 0.03715 4.00454 4.00454 1.46634 0.26236 1.09861 0.40547
2104 24 3.07626 2.58729 3.12489 0.18068 24 - -
2105 1.38629 1.38629 1.38629 1.38629
2106 0.03715 4.00454 4.00454 1.46634 0.26236 1.09861 0.40547
2107 25 0.14352 3.36802 2.79396 3.26852 25 - -
2108 1.38629 1.38629 1.38629 1.38629
2109 0.03715 4.00454 4.00454 1.46634 0.26236 1.09861 0.40547
2110 26 3.07626 2.58729 3.12489 0.18068 26 - -
2111 1.38629 1.38629 1.38629 1.38629
2112 0.03715 4.00454 4.00454 1.46634 0.26236 1.09861 0.40547
2113 27 2.93897 3.57531 0.11853 3.47870 27 - -
2114 1.38629 1.38629 1.38629 1.38629
2115 0.03715 4.00454 4.00454 1.46634 0.26236 1.09861 0.40547
2116 28 3.41899 0.13190 3.46904 2.81871 28 - -
2117 1.38629 1.38629 1.38629 1.38629
2118 0.03715 4.00454 4.00454 1.46634 0.26236 1.09861 0.40547
2119 29 3.41899 0.13190 3.46904 2.81871 29 - -
2120 1.38629 1.38629 1.38629 1.38629
2121 0.03715 4.00454 4.00454 1.46634 0.26236 1.09861 0.40547
2122 30 3.07626 2.58729 3.12489 0.18068 30 - -
2123 1.38629 1.38629 1.38629 1.38629
2124 0.03715 4.00454 4.00454 1.46634 0.26236 1.09861 0.40547
2125 31 3.41899 0.13190 3.46904 2.81871 31 - -
2126 1.38629 1.38629 1.38629 1.38629
2127 0.03715 4.00454 4.00454 1.46634 0.26236 1.09861 0.40547
2128 32 3.07626 2.58729 3.12489 0.18068 32 - -
2129 1.38629 1.38629 1.38629 1.38629
2130 0.03715 4.00454 4.00454 1.46634 0.26236 1.09861 0.40547
2131 33 0.14352 3.36802 2.79396 3.26852 33 - -
2132 1.38629 1.38629 1.38629 1.38629
2133 0.03715 4.00454 4.00454 1.46634 0.26236 1.09861 0.40547
2134 34 3.07626 2.58729 3.12489 0.18068 34 - -
2135 1.38629 1.38629 1.38629 1.38629
2136 0.03715 4.00454 4.00454 1.46634 0.26236 1.09861 0.40547
2137 35 3.41899 0.13190 3.46904 2.81871 35 - -
2138 1.38629 1.38629 1.38629 1.38629
2139 0.03715 4.00454 4.00454 1.46634 0.26236 1.09861 0.40547
2140 36 0.14352 3.36802 2.79396 3.26852 36 - -
2141 1.38629 1.38629 1.38629 1.38629
2142 0.03715 4.00454 4.00454 1.46634 0.26236 1.09861 0.40547
2143 37 2.93897 3.57531 0.11853 3.47870 37 - -
2144 1.38629 1.38629 1.38629 1.38629
2145 0.03715 4.00454 4.00454 1.46634 0.26236 1.09861 0.40547
2146 38 3.07626 2.58729 3.12489 0.18068 38 - -
2147 1.38629 1.38629 1.38629 1.38629
2148 0.03715 4.00454 4.00454 1.46634 0.26236 1.09861 0.40547
2149 39 2.93897 3.57531 0.11853 3.47870 39 - -
2150 1.38629 1.38629 1.38629 1.38629
2151 0.03715 4.00454 4.00454 1.46634 0.26236 1.09861 0.40547
2152 40 3.07626 2.58729 3.12489 0.18068 40 - -
2153 1.38629 1.38629 1.38629 1.38629
2154 0.03715 4.00454 4.00454 1.46634 0.26236 1.09861 0.40547
2155 41 3.41899 0.13190 3.46904 2.81871 41 - -
2156 1.38629 1.38629 1.38629 1.38629
2157 0.03715 4.00454 4.00454 1.46634 0.26236 1.09861 0.40547
2158 42 3.41899 0.13190 3.46904 2.81871 42 - -
2159 1.38629 1.38629 1.38629 1.38629
2160 0.03715 4.00454 4.00454 1.46634 0.26236 1.09861 0.40547
2161 43 0.14352 3.36802 2.79396 3.26852 43 - -
2162 1.38629 1.38629 1.38629 1.38629
2163 0.03715 4.00454 4.00454 1.46634 0.26236 1.09861 0.40547
2164 44 3.07626 2.58729 3.12489 0.18068 44 - -
2165 1.38629 1.38629 1.38629 1.38629
2166 0.03715 4.00454 4.00454 1.46634 0.26236 1.09861 0.40547
2167 45 0.14352 3.36802 2.79396 3.26852 45 - -
2168 1.38629 1.38629 1.38629 1.38629
2169 0.01875 3.98614 * 1.46634 0.26236 0.00000 *
2170 //
2171 HMMER3/b [3.0 | March 2010]
2172 NAME 3_End_Oomycota_58S_end_fortythree_long
2173 LENG 45
2174 ALPH DNA
2175 RF no
2176 CS no
2177 MAP yes
2178 DATE Mon Jan 23 23:10:12 2012
2179 NSEQ 9
2180 EFFN 3.256348
2181 CKSUM 1671317991
2182 STATS LOCAL MSV -7.9243 0.71931
2183 STATS LOCAL VITERBI -7.6584 0.71931
2184 STATS LOCAL FORWARD -4.1486 0.71931
2185 HMM A C G T
2186 m->m m->i m->d i->m i->i d->m d->d
2187 COMPO 1.48059 1.25640 1.45713 1.36682
2188 1.38629 1.38629 1.38629 1.38629
2189 0.03734 3.99936 3.99936 1.46634 0.26236 0.00000 *
2190 1 3.40835 0.13320 3.45885 2.81094 1 - -
2191 1.38629 1.38629 1.38629 1.38629
2192 0.03734 3.99936 3.99936 1.46634 0.26236 1.09861 0.40547
2193 2 3.06699 2.58138 3.11596 0.18220 2 - -
2194 1.38629 1.38629 1.38629 1.38629
2195 0.03734 3.99936 3.99936 1.46634 0.26236 1.09861 0.40547
2196 3 3.06699 2.58138 3.11596 0.18220 3 - -
2197 1.38629 1.38629 1.38629 1.38629
2198 0.03734 3.99936 3.99936 1.46634 0.26236 1.09861 0.40547
2199 4 3.40835 0.13320 3.45885 2.81094 4 - -
2200 1.38629 1.38629 1.38629 1.38629
2201 0.03734 3.99936 3.99936 1.46634 0.26236 1.09861 0.40547
2202 5 3.40835 0.13320 3.45885 2.81094 5 - -
2203 1.38629 1.38629 1.38629 1.38629
2204 0.03734 3.99936 3.99936 1.46634 0.26236 1.09861 0.40547
2205 6 2.93249 3.56592 0.11958 3.46834 6 - -
2206 1.38629 1.38629 1.38629 1.38629
2207 0.03734 3.99936 3.99936 1.46634 0.26236 1.09861 0.40547
2208 7 2.93249 3.56592 0.11958 3.46834 7 - -
2209 1.38629 1.38629 1.38629 1.38629
2210 0.03734 3.99936 3.99936 1.46634 0.26236 1.09861 0.40547
2211 8 2.93249 3.56592 0.11958 3.46834 8 - -
2212 1.38629 1.38629 1.38629 1.38629
2213 0.03734 3.99936 3.99936 1.46634 0.26236 1.09861 0.40547
2214 9 2.93249 3.56592 0.11958 3.46834 9 - -
2215 1.38629 1.38629 1.38629 1.38629
2216 0.03734 3.99936 3.99936 1.46634 0.26236 1.09861 0.40547
2217 10 3.40835 0.13320 3.45885 2.81094 10 - -
2218 1.38629 1.38629 1.38629 1.38629
2219 0.03734 3.99936 3.99936 1.46634 0.26236 1.09861 0.40547
2220 11 3.06699 2.58138 3.11596 0.18220 11 - -
2221 1.38629 1.38629 1.38629 1.38629
2222 0.03734 3.99936 3.99936 1.46634 0.26236 1.09861 0.40547
2223 12 0.14476 3.35879 2.78795 3.25843 12 - -
2224 1.38629 1.38629 1.38629 1.38629
2225 0.03734 3.99936 3.99936 1.46634 0.26236 1.09861 0.40547
2226 13 2.93249 3.56592 0.11958 3.46834 13 - -
2227 1.38629 1.38629 1.38629 1.38629
2228 0.03734 3.99936 3.99936 1.46634 0.26236 1.09861 0.40547
2229 14 3.06699 2.58138 3.11596 0.18220 14 - -
2230 1.38629 1.38629 1.38629 1.38629
2231 0.03734 3.99936 3.99936 1.46634 0.26236 1.09861 0.40547
2232 15 3.40835 0.13320 3.45885 2.81094 15 - -
2233 1.38629 1.38629 1.38629 1.38629
2234 0.03734 3.99936 3.99936 1.46634 0.26236 1.09861 0.40547
2235 16 3.40835 0.13320 3.45885 2.81094 16 - -
2236 1.38629 1.38629 1.38629 1.38629
2237 0.03734 3.99936 3.99936 1.46634 0.26236 1.09861 0.40547
2238 17 3.06699 2.58138 3.11596 0.18220 17 - -
2239 1.38629 1.38629 1.38629 1.38629
2240 0.03734 3.99936 3.99936 1.46634 0.26236 1.09861 0.40547
2241 18 3.40835 0.13320 3.45885 2.81094 18 - -
2242 1.38629 1.38629 1.38629 1.38629
2243 0.03734 3.99936 3.99936 1.46634 0.26236 1.09861 0.40547
2244 19 0.14476 3.35879 2.78795 3.25843 19 - -
2245 1.38629 1.38629 1.38629 1.38629
2246 0.03734 3.99936 3.99936 1.46634 0.26236 1.09861 0.40547
2247 20 2.93249 3.56592 0.11958 3.46834 20 - -
2248 1.38629 1.38629 1.38629 1.38629
2249 0.03734 3.99936 3.99936 1.46634 0.26236 1.09861 0.40547
2250 21 0.14476 3.35879 2.78795 3.25843 21 - -
2251 1.38629 1.38629 1.38629 1.38629
2252 0.03734 3.99936 3.99936 1.46634 0.26236 1.09861 0.40547
2253 22 0.14476 3.35879 2.78795 3.25843 22 - -
2254 1.38629 1.38629 1.38629 1.38629
2255 0.03734 3.99936 3.99936 1.46634 0.26236 1.09861 0.40547
2256 23 2.93249 3.56592 0.11958 3.46834 23 - -
2257 1.38629 1.38629 1.38629 1.38629
2258 0.03734 3.99936 3.99936 1.46634 0.26236 1.09861 0.40547
2259 24 3.06699 2.58138 3.11596 0.18220 24 - -
2260 1.38629 1.38629 1.38629 1.38629
2261 0.03734 3.99936 3.99936 1.46634 0.26236 1.09861 0.40547
2262 25 0.14476 3.35879 2.78795 3.25843 25 - -
2263 1.38629 1.38629 1.38629 1.38629
2264 0.03734 3.99936 3.99936 1.46634 0.26236 1.09861 0.40547
2265 26 3.06699 2.58138 3.11596 0.18220 26 - -
2266 1.38629 1.38629 1.38629 1.38629
2267 0.03734 3.99936 3.99936 1.46634 0.26236 1.09861 0.40547
2268 27 2.93249 3.56592 0.11958 3.46834 27 - -
2269 1.38629 1.38629 1.38629 1.38629
2270 0.03734 3.99936 3.99936 1.46634 0.26236 1.09861 0.40547
2271 28 3.40835 0.13320 3.45885 2.81094 28 - -
2272 1.38629 1.38629 1.38629 1.38629
2273 0.03734 3.99936 3.99936 1.46634 0.26236 1.09861 0.40547
2274 29 3.40835 0.13320 3.45885 2.81094 29 - -
2275 1.38629 1.38629 1.38629 1.38629
2276 0.03734 3.99936 3.99936 1.46634 0.26236 1.09861 0.40547
2277 30 3.06699 2.58138 3.11596 0.18220 30 - -
2278 1.38629 1.38629 1.38629 1.38629
2279 0.03734 3.99936 3.99936 1.46634 0.26236 1.09861 0.40547
2280 31 0.14476 3.35879 2.78795 3.25843 31 - -
2281 1.38629 1.38629 1.38629 1.38629
2282 0.03734 3.99936 3.99936 1.46634 0.26236 1.09861 0.40547
2283 32 3.06699 2.58138 3.11596 0.18220 32 - -
2284 1.38629 1.38629 1.38629 1.38629
2285 0.03734 3.99936 3.99936 1.46634 0.26236 1.09861 0.40547
2286 33 0.14476 3.35879 2.78795 3.25843 33 - -
2287 1.38629 1.38629 1.38629 1.38629
2288 0.03734 3.99936 3.99936 1.46634 0.26236 1.09861 0.40547
2289 34 3.06699 2.58138 3.11596 0.18220 34 - -
2290 1.38629 1.38629 1.38629 1.38629
2291 0.03734 3.99936 3.99936 1.46634 0.26236 1.09861 0.40547
2292 35 3.40835 0.13320 3.45885 2.81094 35 - -
2293 1.38629 1.38629 1.38629 1.38629
2294 0.03734 3.99936 3.99936 1.46634 0.26236 1.09861 0.40547
2295 36 0.14476 3.35879 2.78795 3.25843 36 - -
2296 1.38629 1.38629 1.38629 1.38629
2297 0.03734 3.99936 3.99936 1.46634 0.26236 1.09861 0.40547
2298 37 2.93249 3.56592 0.11958 3.46834 37 - -
2299 1.38629 1.38629 1.38629 1.38629
2300 0.03734 3.99936 3.99936 1.46634 0.26236 1.09861 0.40547
2301 38 3.06699 2.58138 3.11596 0.18220 38 - -
2302 1.38629 1.38629 1.38629 1.38629
2303 0.03734 3.99936 3.99936 1.46634 0.26236 1.09861 0.40547
2304 39 2.93249 3.56592 0.11958 3.46834 39 - -
2305 1.38629 1.38629 1.38629 1.38629
2306 0.03734 3.99936 3.99936 1.46634 0.26236 1.09861 0.40547
2307 40 3.06699 2.58138 3.11596 0.18220 40 - -
2308 1.38629 1.38629 1.38629 1.38629
2309 0.03734 3.99936 3.99936 1.46634 0.26236 1.09861 0.40547
2310 41 3.40835 0.13320 3.45885 2.81094 41 - -
2311 1.38629 1.38629 1.38629 1.38629
2312 0.03734 3.99936 3.99936 1.46634 0.26236 1.09861 0.40547
2313 42 3.40835 0.13320 3.45885 2.81094 42 - -
2314 1.38629 1.38629 1.38629 1.38629
2315 0.03734 3.99936 3.99936 1.46634 0.26236 1.09861 0.40547
2316 43 0.14476 3.35879 2.78795 3.25843 43 - -
2317 1.38629 1.38629 1.38629 1.38629
2318 0.03734 3.99936 3.99936 1.46634 0.26236 1.09861 0.40547
2319 44 3.40835 0.13320 3.45885 2.81094 44 - -
2320 1.38629 1.38629 1.38629 1.38629
2321 0.03734 3.99936 3.99936 1.46634 0.26236 1.09861 0.40547
2322 45 0.14476 3.35879 2.78795 3.25843 45 - -
2323 1.38629 1.38629 1.38629 1.38629
2324 0.01885 3.98087 * 1.46634 0.26236 0.00000 *
2325 //
2326 HMMER3/b [3.0 | March 2010]
2327 NAME 3_End_Oomycota_58S_end_fortytwo_long
2328 LENG 45
2329 ALPH DNA
2330 RF no
2331 CS no
2332 MAP yes
2333 DATE Mon Jan 23 23:10:02 2012
2334 NSEQ 56
2335 EFFN 3.489746
2336 CKSUM 3007113563
2337 STATS LOCAL MSV -7.3786 0.71931
2338 STATS LOCAL VITERBI -7.7130 0.71931
2339 STATS LOCAL FORWARD -3.9070 0.71931
2340 HMM A C G T
2341 m->m m->i m->d i->m i->i d->m d->d
2342 COMPO 1.57617 1.20386 1.45121 1.35126
2343 1.38629 1.38629 1.38629 1.38629
2344 0.03578 4.04125 4.04125 1.46634 0.26236 0.00000 *
2345 1 3.49296 0.12329 3.53984 2.87236 1 - -
2346 1.38629 1.38629 1.38629 1.38629
2347 0.03578 4.04125 4.04125 1.46634 0.26236 1.09861 0.40547
2348 2 3.00468 2.30260 3.05601 0.21894 2 - -
2349 1.38629 1.38629 1.38629 1.38629
2350 0.03578 4.04125 4.04125 1.46634 0.26236 1.09861 0.40547
2351 3 3.14144 2.62870 3.18756 0.17039 3 - -
2352 1.38629 1.38629 1.38629 1.38629
2353 0.03578 4.04125 4.04125 1.46634 0.26236 1.09861 0.40547
2354 4 3.49296 0.12329 3.53984 2.87236 4 - -
2355 1.38629 1.38629 1.38629 1.38629
2356 0.03578 4.04125 4.04125 1.46634 0.26236 1.09861 0.40547
2357 5 2.19980 0.35082 2.44866 2.31613 5 - -
2358 1.38629 1.38629 1.38629 1.38629
2359 0.03578 4.04125 4.04125 1.46634 0.26236 1.09861 0.40547
2360 6 2.98348 3.64028 0.11157 3.55046 6 - -
2361 1.38629 1.38629 1.38629 1.38629
2362 0.03578 4.04125 4.04125 1.46634 0.26236 1.09861 0.40547
2363 7 2.98348 3.64028 0.11157 3.55046 7 - -
2364 1.38629 1.38629 1.38629 1.38629
2365 0.03578 4.04125 4.04125 1.46634 0.26236 1.09861 0.40547
2366 8 2.98348 3.64028 0.11157 3.55046 8 - -
2367 1.38629 1.38629 1.38629 1.38629
2368 0.03578 4.04125 4.04125 1.46634 0.26236 1.09861 0.40547
2369 9 2.98348 3.64028 0.11157 3.55046 9 - -
2370 1.38629 1.38629 1.38629 1.38629
2371 0.03578 4.04125 4.04125 1.46634 0.26236 1.09861 0.40547
2372 10 3.49296 0.12329 3.53984 2.87236 10 - -
2373 1.38629 1.38629 1.38629 1.38629
2374 0.03578 4.04125 4.04125 1.46634 0.26236 1.09861 0.40547
2375 11 3.14144 2.62870 3.18756 0.17039 11 - -
2376 1.38629 1.38629 1.38629 1.38629
2377 0.03578 4.04125 4.04125 1.46634 0.26236 1.09861 0.40547
2378 12 0.39582 2.58117 2.40355 1.82764 12 - -
2379 1.38629 1.38629 1.38629 1.38629
2380 0.03578 4.04125 4.04125 1.46634 0.26236 1.09861 0.40547
2381 13 2.98348 3.64028 0.11157 3.55046 13 - -
2382 1.38629 1.38629 1.38629 1.38629
2383 0.03578 4.04125 4.04125 1.46634 0.26236 1.09861 0.40547
2384 14 3.14144 2.62870 3.18756 0.17039 14 - -
2385 1.38629 1.38629 1.38629 1.38629
2386 0.03578 4.04125 4.04125 1.46634 0.26236 1.09861 0.40547
2387 15 3.49296 0.12329 3.53984 2.87236 15 - -
2388 1.38629 1.38629 1.38629 1.38629
2389 0.03578 4.04125 4.04125 1.46634 0.26236 1.09861 0.40547
2390 16 3.49296 0.12329 3.53984 2.87236 16 - -
2391 1.38629 1.38629 1.38629 1.38629
2392 0.03578 4.04125 4.04125 1.46634 0.26236 1.09861 0.40547
2393 17 3.14144 2.62870 3.18756 0.17039 17 - -
2394 1.38629 1.38629 1.38629 1.38629
2395 0.03578 4.04125 4.04125 1.46634 0.26236 1.09861 0.40547
2396 18 3.49296 0.12329 3.53984 2.87236 18 - -
2397 1.38629 1.38629 1.38629 1.38629
2398 0.03578 4.04125 4.04125 1.46634 0.26236 1.09861 0.40547
2399 19 0.13521 3.43229 2.83561 3.33893 19 - -
2400 1.38629 1.38629 1.38629 1.38629
2401 0.03578 4.04125 4.04125 1.46634 0.26236 1.09861 0.40547
2402 20 2.98348 3.64028 0.11157 3.55046 20 - -
2403 1.38629 1.38629 1.38629 1.38629
2404 0.03578 4.04125 4.04125 1.46634 0.26236 1.09861 0.40547
2405 21 0.13521 3.43229 2.83561 3.33893 21 - -
2406 1.38629 1.38629 1.38629 1.38629
2407 0.03578 4.04125 4.04125 1.46634 0.26236 1.09861 0.40547
2408 22 0.17762 3.27654 2.48713 3.17414 22 - -
2409 1.38629 1.38629 1.38629 1.38629
2410 0.03578 4.04125 4.04125 1.46634 0.26236 1.09861 0.40547
2411 23 2.98348 3.64028 0.11157 3.55046 23 - -
2412 1.38629 1.38629 1.38629 1.38629
2413 0.03578 4.04125 4.04125 1.46634 0.26236 1.09861 0.40547
2414 24 3.14144 2.62870 3.18756 0.17039 24 - -
2415 1.38629 1.38629 1.38629 1.38629
2416 0.03578 4.04125 4.04125 1.46634 0.26236 1.09861 0.40547
2417 25 0.13521 3.43229 2.83561 3.33893 25 - -
2418 1.38629 1.38629 1.38629 1.38629
2419 0.03578 4.04125 4.04125 1.46634 0.26236 1.09861 0.40547
2420 26 3.14144 2.62870 3.18756 0.17039 26 - -
2421 1.38629 1.38629 1.38629 1.38629
2422 0.03578 4.04125 4.04125 1.46634 0.26236 1.09861 0.40547
2423 27 2.98348 3.64028 0.11157 3.55046 27 - -
2424 1.38629 1.38629 1.38629 1.38629
2425 0.03578 4.04125 4.04125 1.46634 0.26236 1.09861 0.40547
2426 28 3.32147 0.16079 3.37394 2.54878 28 - -
2427 1.38629 1.38629 1.38629 1.38629
2428 0.03578 4.04125 4.04125 1.46634 0.26236 1.09861 0.40547
2429 29 3.49296 0.12329 3.53984 2.87236 29 - -
2430 1.38629 1.38629 1.38629 1.38629
2431 0.03578 4.04125 4.04125 1.46634 0.26236 1.09861 0.40547
2432 30 3.14144 2.62870 3.18756 0.17039 30 - -
2433 1.38629 1.38629 1.38629 1.38629
2434 0.03578 4.04125 4.04125 1.46634 0.26236 1.09861 0.40547
2435 31 3.49296 0.12329 3.53984 2.87236 31 - -
2436 1.38629 1.38629 1.38629 1.38629
2437 0.03578 4.04125 4.04125 1.46634 0.26236 1.09861 0.40547
2438 32 3.14144 2.62870 3.18756 0.17039 32 - -
2439 1.38629 1.38629 1.38629 1.38629
2440 0.03578 4.04125 4.04125 1.46634 0.26236 1.09861 0.40547
2441 33 0.13521 3.43229 2.83561 3.33893 33 - -
2442 1.38629 1.38629 1.38629 1.38629
2443 0.03578 4.04125 4.04125 1.46634 0.26236 1.09861 0.40547
2444 34 3.14144 2.62870 3.18756 0.17039 34 - -
2445 1.38629 1.38629 1.38629 1.38629
2446 0.03578 4.04125 4.04125 1.46634 0.26236 1.09861 0.40547
2447 35 3.49296 0.12329 3.53984 2.87236 35 - -
2448 1.38629 1.38629 1.38629 1.38629
2449 0.03578 4.04125 4.04125 1.46634 0.26236 1.09861 0.40547
2450 36 0.13521 3.43229 2.83561 3.33893 36 - -
2451 1.38629 1.38629 1.38629 1.38629
2452 0.03578 4.04125 4.04125 1.46634 0.26236 1.09861 0.40547
2453 37 2.98348 3.64028 0.11157 3.55046 37 - -
2454 1.38629 1.38629 1.38629 1.38629
2455 0.03578 4.04125 4.04125 1.46634 0.26236 1.09861 0.40547
2456 38 3.14144 2.62870 3.18756 0.17039 38 - -
2457 1.38629 1.38629 1.38629 1.38629
2458 0.03578 4.04125 4.04125 1.46634 0.26236 1.09861 0.40547
2459 39 2.98348 3.64028 0.11157 3.55046 39 - -
2460 1.38629 1.38629 1.38629 1.38629
2461 0.03578 4.04125 4.04125 1.46634 0.26236 1.09861 0.40547
2462 40 3.14144 2.62870 3.18756 0.17039 40 - -
2463 1.38629 1.38629 1.38629 1.38629
2464 0.03578 4.04125 4.04125 1.46634 0.26236 1.09861 0.40547
2465 41 3.49296 0.12329 3.53984 2.87236 41 - -
2466 1.38629 1.38629 1.38629 1.38629
2467 0.03578 4.04125 4.04125 1.46634 0.26236 1.09861 0.40547
2468 42 3.49296 0.12329 3.53984 2.87236 42 - -
2469 1.38629 1.38629 1.38629 1.38629
2470 0.03578 4.04125 4.04125 1.46634 0.26236 1.09861 0.40547
2471 43 0.13521 3.43229 2.83561 3.33893 43 - -
2472 1.38629 1.38629 1.38629 1.38629
2473 0.03578 4.04125 4.04125 1.46634 0.26236 1.09861 0.40547
2474 44 3.49296 0.12329 3.53984 2.87236 44 - -
2475 1.38629 1.38629 1.38629 1.38629
2476 0.03578 4.04125 4.04125 1.46634 0.26236 1.09861 0.40547
2477 45 0.13521 3.43229 2.83561 3.33893 45 - -
2478 1.38629 1.38629 1.38629 1.38629
2479 0.01805 4.02352 * 1.46634 0.26236 0.00000 *
2480 //
2481 HMMER3/b [3.0 | March 2010]
2482 NAME 3_End_Oomycota_58S_end_four_long
2483 LENG 45
2484 ALPH DNA
2485 RF no
2486 CS no
2487 MAP yes
2488 DATE Mon Jan 23 23:02:15 2012
2489 NSEQ 4
2490 EFFN 3.433594
2491 CKSUM 2731903192
2492 STATS LOCAL MSV -7.2109 0.71932
2493 STATS LOCAL VITERBI -7.7901 0.71932
2494 STATS LOCAL FORWARD -4.0025 0.71932
2495 HMM A C G T
2496 m->m m->i m->d i->m i->i d->m d->d
2497 COMPO 1.82067 1.48906 1.25448 1.11695
2498 1.38629 1.38629 1.38629 1.38629
2499 0.03615 4.03133 4.03133 1.46634 0.26236 0.00000 *
2500 1 3.47324 0.12552 3.52097 2.85812 1 - -
2501 1.38629 1.38629 1.38629 1.38629
2502 0.03615 4.03133 4.03133 1.46634 0.26236 1.09861 0.40547
2503 2 0.13738 3.41512 2.82452 3.32011 2 - -
2504 1.38629 1.38629 1.38629 1.38629
2505 0.03615 4.03133 4.03133 1.46634 0.26236 1.09861 0.40547
2506 3 3.47324 0.12552 3.52097 2.85812 3 - -
2507 1.38629 1.38629 1.38629 1.38629
2508 0.03615 4.03133 4.03133 1.46634 0.26236 1.09861 0.40547
2509 4 3.12394 2.61759 3.17074 0.17309 4 - -
2510 1.38629 1.38629 1.38629 1.38629
2511 0.03615 4.03133 4.03133 1.46634 0.26236 1.09861 0.40547
2512 5 3.12394 2.61759 3.17074 0.17309 5 - -
2513 1.38629 1.38629 1.38629 1.38629
2514 0.03615 4.03133 4.03133 1.46634 0.26236 1.09861 0.40547
2515 6 3.47324 0.12552 3.52097 2.85812 6 - -
2516 1.38629 1.38629 1.38629 1.38629
2517 0.03615 4.03133 4.03133 1.46634 0.26236 1.09861 0.40547
2518 7 3.47324 0.12552 3.52097 2.85812 7 - -
2519 1.38629 1.38629 1.38629 1.38629
2520 0.03615 4.03133 4.03133 1.46634 0.26236 1.09861 0.40547
2521 8 3.12394 2.61759 3.17074 0.17309 8 - -
2522 1.38629 1.38629 1.38629 1.38629
2523 0.03615 4.03133 4.03133 1.46634 0.26236 1.09861 0.40547
2524 9 2.97169 3.62301 0.11337 3.53137 9 - -
2525 1.38629 1.38629 1.38629 1.38629
2526 0.03615 4.03133 4.03133 1.46634 0.26236 1.09861 0.40547
2527 10 2.97169 3.62301 0.11337 3.53137 10 - -
2528 1.38629 1.38629 1.38629 1.38629
2529 0.03615 4.03133 4.03133 1.46634 0.26236 1.09861 0.40547
2530 11 3.12394 2.61759 3.17074 0.17309 11 - -
2531 1.38629 1.38629 1.38629 1.38629
2532 0.03615 4.03133 4.03133 1.46634 0.26236 1.09861 0.40547
2533 12 3.12394 2.61759 3.17074 0.17309 12 - -
2534 1.38629 1.38629 1.38629 1.38629
2535 0.03615 4.03133 4.03133 1.46634 0.26236 1.09861 0.40547
2536 13 0.13738 3.41512 2.82452 3.32011 13 - -
2537 1.38629 1.38629 1.38629 1.38629
2538 0.03615 4.03133 4.03133 1.46634 0.26236 1.09861 0.40547
2539 14 2.97169 3.62301 0.11337 3.53137 14 - -
2540 1.38629 1.38629 1.38629 1.38629
2541 0.03615 4.03133 4.03133 1.46634 0.26236 1.09861 0.40547
2542 15 3.12394 2.61759 3.17074 0.17309 15 - -
2543 1.38629 1.38629 1.38629 1.38629
2544 0.03615 4.03133 4.03133 1.46634 0.26236 1.09861 0.40547
2545 16 3.47324 0.12552 3.52097 2.85812 16 - -
2546 1.38629 1.38629 1.38629 1.38629
2547 0.03615 4.03133 4.03133 1.46634 0.26236 1.09861 0.40547
2548 17 3.47324 0.12552 3.52097 2.85812 17 - -
2549 1.38629 1.38629 1.38629 1.38629
2550 0.03615 4.03133 4.03133 1.46634 0.26236 1.09861 0.40547
2551 18 2.97169 3.62301 0.11337 3.53137 18 - -
2552 1.38629 1.38629 1.38629 1.38629
2553 0.03615 4.03133 4.03133 1.46634 0.26236 1.09861 0.40547
2554 19 2.97169 3.62301 0.11337 3.53137 19 - -
2555 1.38629 1.38629 1.38629 1.38629
2556 0.03615 4.03133 4.03133 1.46634 0.26236 1.09861 0.40547
2557 20 2.97169 3.62301 0.11337 3.53137 20 - -
2558 1.38629 1.38629 1.38629 1.38629
2559 0.03615 4.03133 4.03133 1.46634 0.26236 1.09861 0.40547
2560 21 2.97169 3.62301 0.11337 3.53137 21 - -
2561 1.38629 1.38629 1.38629 1.38629
2562 0.03615 4.03133 4.03133 1.46634 0.26236 1.09861 0.40547
2563 22 0.13738 3.41512 2.82452 3.32011 22 - -
2564 1.38629 1.38629 1.38629 1.38629
2565 0.03615 4.03133 4.03133 1.46634 0.26236 1.09861 0.40547
2566 23 2.97169 3.62301 0.11337 3.53137 23 - -
2567 1.38629 1.38629 1.38629 1.38629
2568 0.03615 4.03133 4.03133 1.46634 0.26236 1.09861 0.40547
2569 24 3.12394 2.61759 3.17074 0.17309 24 - -
2570 1.38629 1.38629 1.38629 1.38629
2571 0.03615 4.03133 4.03133 1.46634 0.26236 1.09861 0.40547
2572 25 0.13738 3.41512 2.82452 3.32011 25 - -
2573 1.38629 1.38629 1.38629 1.38629
2574 0.03615 4.03133 4.03133 1.46634 0.26236 1.09861 0.40547
2575 26 3.12394 2.61759 3.17074 0.17309 26 - -
2576 1.38629 1.38629 1.38629 1.38629
2577 0.03615 4.03133 4.03133 1.46634 0.26236 1.09861 0.40547
2578 27 2.97169 3.62301 0.11337 3.53137 27 - -
2579 1.38629 1.38629 1.38629 1.38629
2580 0.03615 4.03133 4.03133 1.46634 0.26236 1.09861 0.40547
2581 28 3.12394 2.61759 3.17074 0.17309 28 - -
2582 1.38629 1.38629 1.38629 1.38629
2583 0.03615 4.03133 4.03133 1.46634 0.26236 1.09861 0.40547
2584 29 3.12394 2.61759 3.17074 0.17309 29 - -
2585 1.38629 1.38629 1.38629 1.38629
2586 0.03615 4.03133 4.03133 1.46634 0.26236 1.09861 0.40547
2587 30 3.12394 2.61759 3.17074 0.17309 30 - -
2588 1.38629 1.38629 1.38629 1.38629
2589 0.03615 4.03133 4.03133 1.46634 0.26236 1.09861 0.40547
2590 31 2.97169 3.62301 0.11337 3.53137 31 - -
2591 1.38629 1.38629 1.38629 1.38629
2592 0.03615 4.03133 4.03133 1.46634 0.26236 1.09861 0.40547
2593 32 3.12394 2.61759 3.17074 0.17309 32 - -
2594 1.38629 1.38629 1.38629 1.38629
2595 0.03615 4.03133 4.03133 1.46634 0.26236 1.09861 0.40547
2596 33 0.13738 3.41512 2.82452 3.32011 33 - -
2597 1.38629 1.38629 1.38629 1.38629
2598 0.03615 4.03133 4.03133 1.46634 0.26236 1.09861 0.40547
2599 34 3.12394 2.61759 3.17074 0.17309 34 - -
2600 1.38629 1.38629 1.38629 1.38629
2601 0.03615 4.03133 4.03133 1.46634 0.26236 1.09861 0.40547
2602 35 3.47324 0.12552 3.52097 2.85812 35 - -
2603 1.38629 1.38629 1.38629 1.38629
2604 0.03615 4.03133 4.03133 1.46634 0.26236 1.09861 0.40547
2605 36 0.13738 3.41512 2.82452 3.32011 36 - -
2606 1.38629 1.38629 1.38629 1.38629
2607 0.03615 4.03133 4.03133 1.46634 0.26236 1.09861 0.40547
2608 37 2.97169 3.62301 0.11337 3.53137 37 - -
2609 1.38629 1.38629 1.38629 1.38629
2610 0.03615 4.03133 4.03133 1.46634 0.26236 1.09861 0.40547
2611 38 3.12394 2.61759 3.17074 0.17309 38 - -
2612 1.38629 1.38629 1.38629 1.38629
2613 0.03615 4.03133 4.03133 1.46634 0.26236 1.09861 0.40547
2614 39 2.97169 3.62301 0.11337 3.53137 39 - -
2615 1.38629 1.38629 1.38629 1.38629
2616 0.03615 4.03133 4.03133 1.46634 0.26236 1.09861 0.40547
2617 40 3.12394 2.61759 3.17074 0.17309 40 - -
2618 1.38629 1.38629 1.38629 1.38629
2619 0.03615 4.03133 4.03133 1.46634 0.26236 1.09861 0.40547
2620 41 3.47324 0.12552 3.52097 2.85812 41 - -
2621 1.38629 1.38629 1.38629 1.38629
2622 0.03615 4.03133 4.03133 1.46634 0.26236 1.09861 0.40547
2623 42 3.47324 0.12552 3.52097 2.85812 42 - -
2624 1.38629 1.38629 1.38629 1.38629
2625 0.03615 4.03133 4.03133 1.46634 0.26236 1.09861 0.40547
2626 43 2.97169 3.62301 0.11337 3.53137 43 - -
2627 1.38629 1.38629 1.38629 1.38629
2628 0.03615 4.03133 4.03133 1.46634 0.26236 1.09861 0.40547
2629 44 3.12394 2.61759 3.17074 0.17309 44 - -
2630 1.38629 1.38629 1.38629 1.38629
2631 0.03615 4.03133 4.03133 1.46634 0.26236 1.09861 0.40547
2632 45 2.42512 0.95399 2.49696 0.81193 45 - -
2633 1.38629 1.38629 1.38629 1.38629
2634 0.01824 4.01342 * 1.46634 0.26236 0.00000 *
2635 //
2636 HMMER3/b [3.0 | March 2010]
2637 NAME 3_End_Oomycota_58S_end_fourteen_long
2638 LENG 45
2639 ALPH DNA
2640 RF no
2641 CS no
2642 MAP yes
2643 DATE Mon Jan 23 23:04:22 2012
2644 NSEQ 666
2645 EFFN 3.600014
2646 CKSUM 1820694249
2647 STATS LOCAL MSV -7.3998 0.71932
2648 STATS LOCAL VITERBI -7.7922 0.71932
2649 STATS LOCAL FORWARD -3.9353 0.71932
2650 HMM A C G T
2651 m->m m->i m->d i->m i->i d->m d->d
2652 COMPO 1.62347 1.49044 1.32069 1.16937
2653 1.38629 1.38629 1.38629 1.38629
2654 0.03509 4.06044 4.06044 1.46634 0.26236 0.00000 *
2655 1 3.53055 0.11916 3.57577 2.89941 1 - -
2656 1.38629 1.38629 1.38629 1.38629
2657 0.03509 4.06044 4.06044 1.46634 0.26236 1.09861 0.40547
2658 2 0.13119 3.46507 2.85675 3.37489 2 - -
2659 1.38629 1.38629 1.38629 1.38629
2660 0.03509 4.06044 4.06044 1.46634 0.26236 1.09861 0.40547
2661 3 3.53055 0.11916 3.57577 2.89941 3 - -
2662 1.38629 1.38629 1.38629 1.38629
2663 0.03509 4.06044 4.06044 1.46634 0.26236 1.09861 0.40547
2664 4 3.17506 2.65002 3.21987 0.16535 4 - -
2665 1.38629 1.38629 1.38629 1.38629
2666 0.03509 4.06044 4.06044 1.46634 0.26236 1.09861 0.40547
2667 5 3.17506 2.65002 3.21987 0.16535 5 - -
2668 1.38629 1.38629 1.38629 1.38629
2669 0.03509 4.06044 4.06044 1.46634 0.26236 1.09861 0.40547
2670 6 2.68873 1.62150 2.75212 0.39953 6 - -
2671 1.38629 1.38629 1.38629 1.38629
2672 0.03509 4.06044 4.06044 1.46634 0.26236 1.09861 0.40547
2673 7 3.53055 0.11916 3.57577 2.89941 7 - -
2674 1.38629 1.38629 1.38629 1.38629
2675 0.03509 4.06044 4.06044 1.46634 0.26236 1.09861 0.40547
2676 8 3.00580 3.67309 0.10824 3.58679 8 - -
2677 1.38629 1.38629 1.38629 1.38629
2678 0.03509 4.06044 4.06044 1.46634 0.26236 1.09861 0.40547
2679 9 3.00580 3.67309 0.10824 3.58679 9 - -
2680 1.38629 1.38629 1.38629 1.38629
2681 0.03509 4.06044 4.06044 1.46634 0.26236 1.09861 0.40547
2682 10 3.00580 3.67309 0.10824 3.58679 10 - -
2683 1.38629 1.38629 1.38629 1.38629
2684 0.03509 4.06044 4.06044 1.46634 0.26236 1.09861 0.40547
2685 11 3.17506 2.65002 3.21987 0.16535 11 - -
2686 1.38629 1.38629 1.38629 1.38629
2687 0.03509 4.06044 4.06044 1.46634 0.26236 1.09861 0.40547
2688 12 3.17506 2.65002 3.21987 0.16535 12 - -
2689 1.38629 1.38629 1.38629 1.38629
2690 0.03509 4.06044 4.06044 1.46634 0.26236 1.09861 0.40547
2691 13 0.13119 3.46507 2.85675 3.37489 13 - -
2692 1.38629 1.38629 1.38629 1.38629
2693 0.03509 4.06044 4.06044 1.46634 0.26236 1.09861 0.40547
2694 14 3.17506 2.65002 3.21987 0.16535 14 - -
2695 1.38629 1.38629 1.38629 1.38629
2696 0.03509 4.06044 4.06044 1.46634 0.26236 1.09861 0.40547
2697 15 2.14190 3.19865 0.22835 3.08110 15 - -
2698 1.38629 1.38629 1.38629 1.38629
2699 0.03509 4.06044 4.06044 1.46634 0.26236 1.09861 0.40547
2700 16 3.53055 0.11916 3.57577 2.89941 16 - -
2701 1.38629 1.38629 1.38629 1.38629
2702 0.03509 4.06044 4.06044 1.46634 0.26236 1.09861 0.40547
2703 17 3.53055 0.11916 3.57577 2.89941 17 - -
2704 1.38629 1.38629 1.38629 1.38629
2705 0.03509 4.06044 4.06044 1.46634 0.26236 1.09861 0.40547
2706 18 3.17506 2.65002 3.21987 0.16535 18 - -
2707 1.38629 1.38629 1.38629 1.38629
2708 0.03509 4.06044 4.06044 1.46634 0.26236 1.09861 0.40547
2709 19 3.00580 3.67309 0.10824 3.58679 19 - -
2710 1.38629 1.38629 1.38629 1.38629
2711 0.03509 4.06044 4.06044 1.46634 0.26236 1.09861 0.40547
2712 20 3.00580 3.67309 0.10824 3.58679 20 - -
2713 1.38629 1.38629 1.38629 1.38629
2714 0.03509 4.06044 4.06044 1.46634 0.26236 1.09861 0.40547
2715 21 0.13119 3.46507 2.85675 3.37489 21 - -
2716 1.38629 1.38629 1.38629 1.38629
2717 0.03509 4.06044 4.06044 1.46634 0.26236 1.09861 0.40547
2718 22 0.13119 3.46507 2.85675 3.37489 22 - -
2719 1.38629 1.38629 1.38629 1.38629
2720 0.03509 4.06044 4.06044 1.46634 0.26236 1.09861 0.40547
2721 23 3.00580 3.67309 0.10824 3.58679 23 - -
2722 1.38629 1.38629 1.38629 1.38629
2723 0.03509 4.06044 4.06044 1.46634 0.26236 1.09861 0.40547
2724 24 3.17506 2.65002 3.21987 0.16535 24 - -
2725 1.38629 1.38629 1.38629 1.38629
2726 0.03509 4.06044 4.06044 1.46634 0.26236 1.09861 0.40547
2727 25 0.13119 3.46507 2.85675 3.37489 25 - -
2728 1.38629 1.38629 1.38629 1.38629
2729 0.03509 4.06044 4.06044 1.46634 0.26236 1.09861 0.40547
2730 26 3.17506 2.65002 3.21987 0.16535 26 - -
2731 1.38629 1.38629 1.38629 1.38629
2732 0.03509 4.06044 4.06044 1.46634 0.26236 1.09861 0.40547
2733 27 3.00580 3.67309 0.10824 3.58679 27 - -
2734 1.38629 1.38629 1.38629 1.38629
2735 0.03509 4.06044 4.06044 1.46634 0.26236 1.09861 0.40547
2736 28 2.47202 1.08199 2.54257 0.69716 28 - -
2737 1.38629 1.38629 1.38629 1.38629
2738 0.03509 4.06044 4.06044 1.46634 0.26236 1.09861 0.40547
2739 29 3.23344 0.18765 3.28879 2.36046 29 - -
2740 1.38629 1.38629 1.38629 1.38629
2741 0.03509 4.06044 4.06044 1.46634 0.26236 1.09861 0.40547
2742 30 3.17506 2.65002 3.21987 0.16535 30 - -
2743 1.38629 1.38629 1.38629 1.38629
2744 0.03509 4.06044 4.06044 1.46634 0.26236 1.09861 0.40547
2745 31 3.00580 3.67309 0.10824 3.58679 31 - -
2746 1.38629 1.38629 1.38629 1.38629
2747 0.03509 4.06044 4.06044 1.46634 0.26236 1.09861 0.40547
2748 32 3.17506 2.65002 3.21987 0.16535 32 - -
2749 1.38629 1.38629 1.38629 1.38629
2750 0.03509 4.06044 4.06044 1.46634 0.26236 1.09861 0.40547
2751 33 0.13119 3.46507 2.85675 3.37489 33 - -
2752 1.38629 1.38629 1.38629 1.38629
2753 0.03509 4.06044 4.06044 1.46634 0.26236 1.09861 0.40547
2754 34 3.17506 2.65002 3.21987 0.16535 34 - -
2755 1.38629 1.38629 1.38629 1.38629
2756 0.03509 4.06044 4.06044 1.46634 0.26236 1.09861 0.40547
2757 35 3.53055 0.11916 3.57577 2.89941 35 - -
2758 1.38629 1.38629 1.38629 1.38629
2759 0.03509 4.06044 4.06044 1.46634 0.26236 1.09861 0.40547
2760 36 0.13119 3.46507 2.85675 3.37489 36 - -
2761 1.38629 1.38629 1.38629 1.38629
2762 0.03509 4.06044 4.06044 1.46634 0.26236 1.09861 0.40547
2763 37 3.00580 3.67309 0.10824 3.58679 37 - -
2764 1.38629 1.38629 1.38629 1.38629
2765 0.03509 4.06044 4.06044 1.46634 0.26236 1.09861 0.40547
2766 38 3.17506 2.65002 3.21987 0.16535 38 - -
2767 1.38629 1.38629 1.38629 1.38629
2768 0.03509 4.06044 4.06044 1.46634 0.26236 1.09861 0.40547
2769 39 3.00580 3.67309 0.10824 3.58679 39 - -
2770 1.38629 1.38629 1.38629 1.38629
2771 0.03509 4.06044 4.06044 1.46634 0.26236 1.09861 0.40547
2772 40 3.17506 2.65002 3.21987 0.16535 40 - -
2773 1.38629 1.38629 1.38629 1.38629
2774 0.03509 4.06044 4.06044 1.46634 0.26236 1.09861 0.40547
2775 41 3.53055 0.11916 3.57577 2.89941 41 - -
2776 1.38629 1.38629 1.38629 1.38629
2777 0.03509 4.06044 4.06044 1.46634 0.26236 1.09861 0.40547
2778 42 3.53055 0.11916 3.57577 2.89941 42 - -
2779 1.38629 1.38629 1.38629 1.38629
2780 0.03509 4.06044 4.06044 1.46634 0.26236 1.09861 0.40547
2781 43 3.00580 3.67309 0.10824 3.58679 43 - -
2782 1.38629 1.38629 1.38629 1.38629
2783 0.03509 4.06044 4.06044 1.46634 0.26236 1.09861 0.40547
2784 44 3.17506 2.65002 3.21987 0.16535 44 - -
2785 1.38629 1.38629 1.38629 1.38629
2786 0.03509 4.06044 4.06044 1.46634 0.26236 1.09861 0.40547
2787 45 0.13119 3.46507 2.85675 3.37489 45 - -
2788 1.38629 1.38629 1.38629 1.38629
2789 0.01770 4.04305 * 1.46634 0.26236 0.00000 *
2790 //
2791 HMMER3/b [3.0 | March 2010]
2792 NAME 3_End_Oomycota_58S_end_nine_long
2793 LENG 45
2794 ALPH DNA
2795 RF no
2796 CS no
2797 MAP yes
2798 DATE Mon Jan 23 23:03:24 2012
2799 NSEQ 2
2800 EFFN 2.000000
2801 CKSUM 954821854
2802 STATS LOCAL MSV -7.3654 0.72822
2803 STATS LOCAL VITERBI -8.3615 0.72822
2804 STATS LOCAL FORWARD -3.4843 0.72822
2805 HMM A C G T
2806 m->m m->i m->d i->m i->i d->m d->d
2807 COMPO 1.51878 1.44901 1.31953 1.27670
2808 1.38629 1.38629 1.38629 1.38629
2809 0.04879 3.73767 3.73767 1.46634 0.26236 0.00000 *
2810 1 2.81865 0.23582 2.88868 2.35662 1 - -
2811 1.38629 1.38629 1.38629 1.38629
2812 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
2813 2 0.23862 2.84929 2.43386 2.70756 2 - -
2814 1.38629 1.38629 1.38629 1.38629
2815 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
2816 3 2.81865 0.23582 2.88868 2.35662 3 - -
2817 1.38629 1.38629 1.38629 1.38629
2818 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
2819 4 2.57915 2.25909 2.64442 0.28946 4 - -
2820 1.38629 1.38629 1.38629 1.38629
2821 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
2822 5 2.57915 2.25909 2.64442 0.28946 5 - -
2823 1.38629 1.38629 1.38629 1.38629
2824 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
2825 6 0.23862 2.84929 2.43386 2.70756 6 - -
2826 1.38629 1.38629 1.38629 1.38629
2827 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
2828 7 2.81865 0.23582 2.88868 2.35662 7 - -
2829 1.38629 1.38629 1.38629 1.38629
2830 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
2831 8 2.53331 3.02441 0.20344 2.88069 8 - -
2832 1.38629 1.38629 1.38629 1.38629
2833 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
2834 9 2.53331 3.02441 0.20344 2.88069 9 - -
2835 1.38629 1.38629 1.38629 1.38629
2836 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
2837 10 2.53331 3.02441 0.20344 2.88069 10 - -
2838 1.38629 1.38629 1.38629 1.38629
2839 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
2840 11 2.57915 2.25909 2.64442 0.28946 11 - -
2841 1.38629 1.38629 1.38629 1.38629
2842 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
2843 12 2.57915 2.25909 2.64442 0.28946 12 - -
2844 1.38629 1.38629 1.38629 1.38629
2845 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
2846 13 0.23862 2.84929 2.43386 2.70756 13 - -
2847 1.38629 1.38629 1.38629 1.38629
2848 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
2849 14 2.53331 3.02441 0.20344 2.88069 14 - -
2850 1.38629 1.38629 1.38629 1.38629
2851 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
2852 15 2.57915 2.25909 2.64442 0.28946 15 - -
2853 1.38629 1.38629 1.38629 1.38629
2854 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
2855 16 2.81865 0.23582 2.88868 2.35662 16 - -
2856 1.38629 1.38629 1.38629 1.38629
2857 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
2858 17 2.81865 0.23582 2.88868 2.35662 17 - -
2859 1.38629 1.38629 1.38629 1.38629
2860 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
2861 18 2.57915 2.25909 2.64442 0.28946 18 - -
2862 1.38629 1.38629 1.38629 1.38629
2863 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
2864 19 2.53331 3.02441 0.20344 2.88069 19 - -
2865 1.38629 1.38629 1.38629 1.38629
2866 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
2867 20 2.53331 3.02441 0.20344 2.88069 20 - -
2868 1.38629 1.38629 1.38629 1.38629
2869 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
2870 21 0.23862 2.84929 2.43386 2.70756 21 - -
2871 1.38629 1.38629 1.38629 1.38629
2872 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
2873 22 0.23862 2.84929 2.43386 2.70756 22 - -
2874 1.38629 1.38629 1.38629 1.38629
2875 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
2876 23 2.53331 3.02441 0.20344 2.88069 23 - -
2877 1.38629 1.38629 1.38629 1.38629
2878 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
2879 24 2.57915 2.25909 2.64442 0.28946 24 - -
2880 1.38629 1.38629 1.38629 1.38629
2881 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
2882 25 0.23862 2.84929 2.43386 2.70756 25 - -
2883 1.38629 1.38629 1.38629 1.38629
2884 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
2885 26 2.57915 2.25909 2.64442 0.28946 26 - -
2886 1.38629 1.38629 1.38629 1.38629
2887 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
2888 27 2.53331 3.02441 0.20344 2.88069 27 - -
2889 1.38629 1.38629 1.38629 1.38629
2890 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
2891 28 2.81865 0.23582 2.88868 2.35662 28 - -
2892 1.38629 1.38629 1.38629 1.38629
2893 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
2894 29 2.81865 0.23582 2.88868 2.35662 29 - -
2895 1.38629 1.38629 1.38629 1.38629
2896 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
2897 30 2.57915 2.25909 2.64442 0.28946 30 - -
2898 1.38629 1.38629 1.38629 1.38629
2899 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
2900 31 2.53331 3.02441 0.20344 2.88069 31 - -
2901 1.38629 1.38629 1.38629 1.38629
2902 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
2903 32 2.57915 2.25909 2.64442 0.28946 32 - -
2904 1.38629 1.38629 1.38629 1.38629
2905 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
2906 33 0.23862 2.84929 2.43386 2.70756 33 - -
2907 1.38629 1.38629 1.38629 1.38629
2908 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
2909 34 2.57915 2.25909 2.64442 0.28946 34 - -
2910 1.38629 1.38629 1.38629 1.38629
2911 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
2912 35 2.81865 0.23582 2.88868 2.35662 35 - -
2913 1.38629 1.38629 1.38629 1.38629
2914 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
2915 36 0.23862 2.84929 2.43386 2.70756 36 - -
2916 1.38629 1.38629 1.38629 1.38629
2917 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
2918 37 2.53331 3.02441 0.20344 2.88069 37 - -
2919 1.38629 1.38629 1.38629 1.38629
2920 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
2921 38 2.57915 2.25909 2.64442 0.28946 38 - -
2922 1.38629 1.38629 1.38629 1.38629
2923 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
2924 39 2.53331 3.02441 0.20344 2.88069 39 - -
2925 1.38629 1.38629 1.38629 1.38629
2926 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
2927 40 2.57915 2.25909 2.64442 0.28946 40 - -
2928 1.38629 1.38629 1.38629 1.38629
2929 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
2930 41 2.81865 0.23582 2.88868 2.35662 41 - -
2931 1.38629 1.38629 1.38629 1.38629
2932 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
2933 42 2.81865 0.23582 2.88868 2.35662 42 - -
2934 1.38629 1.38629 1.38629 1.38629
2935 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
2936 43 2.53331 3.02441 0.20344 2.88069 43 - -
2937 1.38629 1.38629 1.38629 1.38629
2938 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
2939 44 2.57915 2.25909 2.64442 0.28946 44 - -
2940 1.38629 1.38629 1.38629 1.38629
2941 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
2942 45 0.23862 2.84929 2.43386 2.70756 45 - -
2943 1.38629 1.38629 1.38629 1.38629
2944 0.02469 3.71357 * 1.46634 0.26236 0.00000 *
2945 //
2946 HMMER3/b [3.0 | March 2010]
2947 NAME 3_End_Oomycota_58S_end_nineteena_long
2948 LENG 45
2949 ALPH DNA
2950 RF no
2951 CS no
2952 MAP yes
2953 DATE Mon Jan 23 23:05:33 2012
2954 NSEQ 2
2955 EFFN 2.000000
2956 CKSUM 583905888
2957 STATS LOCAL MSV -7.3831 0.72833
2958 STATS LOCAL VITERBI -8.4145 0.72833
2959 STATS LOCAL FORWARD -3.4031 0.72833
2960 HMM A C G T
2961 m->m m->i m->d i->m i->i d->m d->d
2962 COMPO 1.58651 1.44473 1.32079 1.22885
2963 1.38629 1.38629 1.38629 1.38629
2964 0.04879 3.73767 3.73767 1.46634 0.26236 0.00000 *
2965 1 2.81865 0.23582 2.88868 2.35662 1 - -
2966 1.38629 1.38629 1.38629 1.38629
2967 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
2968 2 0.23862 2.84929 2.43386 2.70756 2 - -
2969 1.38629 1.38629 1.38629 1.38629
2970 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
2971 3 2.81865 0.23582 2.88868 2.35662 3 - -
2972 1.38629 1.38629 1.38629 1.38629
2973 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
2974 4 2.57915 2.25909 2.64442 0.28946 4 - -
2975 1.38629 1.38629 1.38629 1.38629
2976 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
2977 5 2.57915 2.25909 2.64442 0.28946 5 - -
2978 1.38629 1.38629 1.38629 1.38629
2979 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
2980 6 2.81865 0.23582 2.88868 2.35662 6 - -
2981 1.38629 1.38629 1.38629 1.38629
2982 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
2983 7 2.81865 0.23582 2.88868 2.35662 7 - -
2984 1.38629 1.38629 1.38629 1.38629
2985 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
2986 8 2.53331 3.02441 0.20344 2.88069 8 - -
2987 1.38629 1.38629 1.38629 1.38629
2988 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
2989 9 2.53331 3.02441 0.20344 2.88069 9 - -
2990 1.38629 1.38629 1.38629 1.38629
2991 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
2992 10 2.53331 3.02441 0.20344 2.88069 10 - -
2993 1.38629 1.38629 1.38629 1.38629
2994 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
2995 11 2.57915 2.25909 2.64442 0.28946 11 - -
2996 1.38629 1.38629 1.38629 1.38629
2997 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
2998 12 2.57915 2.25909 2.64442 0.28946 12 - -
2999 1.38629 1.38629 1.38629 1.38629
3000 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
3001 13 0.23862 2.84929 2.43386 2.70756 13 - -
3002 1.38629 1.38629 1.38629 1.38629
3003 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
3004 14 2.57915 2.25909 2.64442 0.28946 14 - -
3005 1.38629 1.38629 1.38629 1.38629
3006 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
3007 15 2.53331 3.02441 0.20344 2.88069 15 - -
3008 1.38629 1.38629 1.38629 1.38629
3009 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
3010 16 2.81865 0.23582 2.88868 2.35662 16 - -
3011 1.38629 1.38629 1.38629 1.38629
3012 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
3013 17 2.81865 0.23582 2.88868 2.35662 17 - -
3014 1.38629 1.38629 1.38629 1.38629
3015 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
3016 18 2.57915 2.25909 2.64442 0.28946 18 - -
3017 1.38629 1.38629 1.38629 1.38629
3018 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
3019 19 2.53331 3.02441 0.20344 2.88069 19 - -
3020 1.38629 1.38629 1.38629 1.38629
3021 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
3022 20 2.53331 3.02441 0.20344 2.88069 20 - -
3023 1.38629 1.38629 1.38629 1.38629
3024 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
3025 21 0.23862 2.84929 2.43386 2.70756 21 - -
3026 1.38629 1.38629 1.38629 1.38629
3027 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
3028 22 0.23862 2.84929 2.43386 2.70756 22 - -
3029 1.38629 1.38629 1.38629 1.38629
3030 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
3031 23 2.53331 3.02441 0.20344 2.88069 23 - -
3032 1.38629 1.38629 1.38629 1.38629
3033 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
3034 24 2.57915 2.25909 2.64442 0.28946 24 - -
3035 1.38629 1.38629 1.38629 1.38629
3036 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
3037 25 0.23862 2.84929 2.43386 2.70756 25 - -
3038 1.38629 1.38629 1.38629 1.38629
3039 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
3040 26 2.57915 2.25909 2.64442 0.28946 26 - -
3041 1.38629 1.38629 1.38629 1.38629
3042 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
3043 27 2.53331 3.02441 0.20344 2.88069 27 - -
3044 1.38629 1.38629 1.38629 1.38629
3045 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
3046 28 2.57915 2.25909 2.64442 0.28946 28 - -
3047 1.38629 1.38629 1.38629 1.38629
3048 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
3049 29 2.81865 0.23582 2.88868 2.35662 29 - -
3050 1.38629 1.38629 1.38629 1.38629
3051 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
3052 30 2.57915 2.25909 2.64442 0.28946 30 - -
3053 1.38629 1.38629 1.38629 1.38629
3054 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
3055 31 2.53331 3.02441 0.20344 2.88069 31 - -
3056 1.38629 1.38629 1.38629 1.38629
3057 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
3058 32 2.57915 2.25909 2.64442 0.28946 32 - -
3059 1.38629 1.38629 1.38629 1.38629
3060 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
3061 33 0.23862 2.84929 2.43386 2.70756 33 - -
3062 1.38629 1.38629 1.38629 1.38629
3063 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
3064 34 2.57915 2.25909 2.64442 0.28946 34 - -
3065 1.38629 1.38629 1.38629 1.38629
3066 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
3067 35 2.81865 0.23582 2.88868 2.35662 35 - -
3068 1.38629 1.38629 1.38629 1.38629
3069 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
3070 36 0.23862 2.84929 2.43386 2.70756 36 - -
3071 1.38629 1.38629 1.38629 1.38629
3072 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
3073 37 2.53331 3.02441 0.20344 2.88069 37 - -
3074 1.38629 1.38629 1.38629 1.38629
3075 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
3076 38 2.57915 2.25909 2.64442 0.28946 38 - -
3077 1.38629 1.38629 1.38629 1.38629
3078 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
3079 39 2.53331 3.02441 0.20344 2.88069 39 - -
3080 1.38629 1.38629 1.38629 1.38629
3081 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
3082 40 2.57915 2.25909 2.64442 0.28946 40 - -
3083 1.38629 1.38629 1.38629 1.38629
3084 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
3085 41 2.81865 0.23582 2.88868 2.35662 41 - -
3086 1.38629 1.38629 1.38629 1.38629
3087 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
3088 42 2.81865 0.23582 2.88868 2.35662 42 - -
3089 1.38629 1.38629 1.38629 1.38629
3090 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
3091 43 2.53331 3.02441 0.20344 2.88069 43 - -
3092 1.38629 1.38629 1.38629 1.38629
3093 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
3094 44 2.57915 2.25909 2.64442 0.28946 44 - -
3095 1.38629 1.38629 1.38629 1.38629
3096 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
3097 45 0.23862 2.84929 2.43386 2.70756 45 - -
3098 1.38629 1.38629 1.38629 1.38629
3099 0.02469 3.71357 * 1.46634 0.26236 0.00000 *
3100 //
3101 HMMER3/b [3.0 | March 2010]
3102 NAME 3_End_Oomycota_58S_end_nineteenb_long
3103 LENG 45
3104 ALPH DNA
3105 RF no
3106 CS no
3107 MAP yes
3108 DATE Mon Jan 23 23:05:40 2012
3109 NSEQ 2
3110 EFFN 2.000000
3111 CKSUM 3878979993
3112 STATS LOCAL MSV -7.4408 0.72801
3113 STATS LOCAL VITERBI -8.1409 0.72801
3114 STATS LOCAL FORWARD -3.5288 0.72801
3115 HMM A C G T
3116 m->m m->i m->d i->m i->i d->m d->d
3117 COMPO 1.58775 1.39261 1.26747 1.32560
3118 1.38629 1.38629 1.38629 1.38629
3119 0.04879 3.73767 3.73767 1.46634 0.26236 0.00000 *
3120 1 2.81865 0.23582 2.88868 2.35662 1 - -
3121 1.38629 1.38629 1.38629 1.38629
3122 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
3123 2 0.23862 2.84929 2.43386 2.70756 2 - -
3124 1.38629 1.38629 1.38629 1.38629
3125 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
3126 3 2.81865 0.23582 2.88868 2.35662 3 - -
3127 1.38629 1.38629 1.38629 1.38629
3128 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
3129 4 2.57915 2.25909 2.64442 0.28946 4 - -
3130 1.38629 1.38629 1.38629 1.38629
3131 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
3132 5 2.57915 2.25909 2.64442 0.28946 5 - -
3133 1.38629 1.38629 1.38629 1.38629
3134 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
3135 6 2.81865 0.23582 2.88868 2.35662 6 - -
3136 1.38629 1.38629 1.38629 1.38629
3137 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
3138 7 2.81865 0.23582 2.88868 2.35662 7 - -
3139 1.38629 1.38629 1.38629 1.38629
3140 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
3141 8 2.53331 3.02441 0.20344 2.88069 8 - -
3142 1.38629 1.38629 1.38629 1.38629
3143 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
3144 9 2.53331 3.02441 0.20344 2.88069 9 - -
3145 1.38629 1.38629 1.38629 1.38629
3146 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
3147 10 2.53331 3.02441 0.20344 2.88069 10 - -
3148 1.38629 1.38629 1.38629 1.38629
3149 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
3150 11 2.57915 2.25909 2.64442 0.28946 11 - -
3151 1.38629 1.38629 1.38629 1.38629
3152 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
3153 12 2.57915 2.25909 2.64442 0.28946 12 - -
3154 1.38629 1.38629 1.38629 1.38629
3155 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
3156 13 0.23862 2.84929 2.43386 2.70756 13 - -
3157 1.38629 1.38629 1.38629 1.38629
3158 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
3159 14 2.57915 2.25909 2.64442 0.28946 14 - -
3160 1.38629 1.38629 1.38629 1.38629
3161 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
3162 15 2.53331 3.02441 0.20344 2.88069 15 - -
3163 1.38629 1.38629 1.38629 1.38629
3164 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
3165 16 2.81865 0.23582 2.88868 2.35662 16 - -
3166 1.38629 1.38629 1.38629 1.38629
3167 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
3168 17 2.81865 0.23582 2.88868 2.35662 17 - -
3169 1.38629 1.38629 1.38629 1.38629
3170 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
3171 18 2.57915 2.25909 2.64442 0.28946 18 - -
3172 1.38629 1.38629 1.38629 1.38629
3173 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
3174 19 2.53331 3.02441 0.20344 2.88069 19 - -
3175 1.38629 1.38629 1.38629 1.38629
3176 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
3177 20 2.53331 3.02441 0.20344 2.88069 20 - -
3178 1.38629 1.38629 1.38629 1.38629
3179 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
3180 21 2.53331 3.02441 0.20344 2.88069 21 - -
3181 1.38629 1.38629 1.38629 1.38629
3182 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
3183 22 0.23862 2.84929 2.43386 2.70756 22 - -
3184 1.38629 1.38629 1.38629 1.38629
3185 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
3186 23 2.53331 3.02441 0.20344 2.88069 23 - -
3187 1.38629 1.38629 1.38629 1.38629
3188 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
3189 24 2.57915 2.25909 2.64442 0.28946 24 - -
3190 1.38629 1.38629 1.38629 1.38629
3191 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
3192 25 0.23862 2.84929 2.43386 2.70756 25 - -
3193 1.38629 1.38629 1.38629 1.38629
3194 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
3195 26 2.57915 2.25909 2.64442 0.28946 26 - -
3196 1.38629 1.38629 1.38629 1.38629
3197 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
3198 27 2.53331 3.02441 0.20344 2.88069 27 - -
3199 1.38629 1.38629 1.38629 1.38629
3200 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
3201 28 2.81865 0.23582 2.88868 2.35662 28 - -
3202 1.38629 1.38629 1.38629 1.38629
3203 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
3204 29 2.81865 0.23582 2.88868 2.35662 29 - -
3205 1.38629 1.38629 1.38629 1.38629
3206 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
3207 30 2.57915 2.25909 2.64442 0.28946 30 - -
3208 1.38629 1.38629 1.38629 1.38629
3209 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
3210 31 2.53331 3.02441 0.20344 2.88069 31 - -
3211 1.38629 1.38629 1.38629 1.38629
3212 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
3213 32 2.57915 2.25909 2.64442 0.28946 32 - -
3214 1.38629 1.38629 1.38629 1.38629
3215 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
3216 33 0.23862 2.84929 2.43386 2.70756 33 - -
3217 1.38629 1.38629 1.38629 1.38629
3218 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
3219 34 2.57915 2.25909 2.64442 0.28946 34 - -
3220 1.38629 1.38629 1.38629 1.38629
3221 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
3222 35 2.81865 0.23582 2.88868 2.35662 35 - -
3223 1.38629 1.38629 1.38629 1.38629
3224 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
3225 36 0.23862 2.84929 2.43386 2.70756 36 - -
3226 1.38629 1.38629 1.38629 1.38629
3227 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
3228 37 2.53331 3.02441 0.20344 2.88069 37 - -
3229 1.38629 1.38629 1.38629 1.38629
3230 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
3231 38 2.57915 2.25909 2.64442 0.28946 38 - -
3232 1.38629 1.38629 1.38629 1.38629
3233 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
3234 39 2.53331 3.02441 0.20344 2.88069 39 - -
3235 1.38629 1.38629 1.38629 1.38629
3236 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
3237 40 2.57915 2.25909 2.64442 0.28946 40 - -
3238 1.38629 1.38629 1.38629 1.38629
3239 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
3240 41 2.81865 0.23582 2.88868 2.35662 41 - -
3241 1.38629 1.38629 1.38629 1.38629
3242 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
3243 42 2.81865 0.23582 2.88868 2.35662 42 - -
3244 1.38629 1.38629 1.38629 1.38629
3245 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
3246 43 2.53331 3.02441 0.20344 2.88069 43 - -
3247 1.38629 1.38629 1.38629 1.38629
3248 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
3249 44 0.23862 2.84929 2.43386 2.70756 44 - -
3250 1.38629 1.38629 1.38629 1.38629
3251 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
3252 45 0.23862 2.84929 2.43386 2.70756 45 - -
3253 1.38629 1.38629 1.38629 1.38629
3254 0.02469 3.71357 * 1.46634 0.26236 0.00000 *
3255 //
3256 HMMER3/b [3.0 | March 2010]
3257 NAME 3_End_Oomycota_58S_end_one_long
3258 LENG 45
3259 ALPH DNA
3260 RF no
3261 CS no
3262 MAP yes
3263 DATE Mon Jan 23 23:01:47 2012
3264 NSEQ 54
3265 EFFN 3.529907
3266 CKSUM 4149572995
3267 STATS LOCAL MSV -7.2722 0.71932
3268 STATS LOCAL VITERBI -7.7867 0.71932
3269 STATS LOCAL FORWARD -3.8680 0.71932
3270 HMM A C G T
3271 m->m m->i m->d i->m i->i d->m d->d
3272 COMPO 1.81840 1.55884 1.25178 1.07488
3273 1.38629 1.38629 1.38629 1.38629
3274 0.03553 4.04828 4.04828 1.46634 0.26236 0.00000 *
3275 1 3.50682 0.12175 3.55309 2.88235 1 - -
3276 1.38629 1.38629 1.38629 1.38629
3277 0.03553 4.04828 4.04828 1.46634 0.26236 1.09861 0.40547
3278 2 0.13371 3.44437 2.84341 3.35218 2 - -
3279 1.38629 1.38629 1.38629 1.38629
3280 0.03553 4.04828 4.04828 1.46634 0.26236 1.09861 0.40547
3281 3 3.50682 0.12175 3.55309 2.88235 3 - -
3282 1.38629 1.38629 1.38629 1.38629
3283 0.03553 4.04828 4.04828 1.46634 0.26236 1.09861 0.40547
3284 4 3.15380 2.63654 3.19944 0.16852 4 - -
3285 1.38629 1.38629 1.38629 1.38629
3286 0.03553 4.04828 4.04828 1.46634 0.26236 1.09861 0.40547
3287 5 3.15380 2.63654 3.19944 0.16852 5 - -
3288 1.38629 1.38629 1.38629 1.38629
3289 0.03553 4.04828 4.04828 1.46634 0.26236 1.09861 0.40547
3290 6 2.44135 0.91372 2.51314 0.84185 6 - -
3291 1.38629 1.38629 1.38629 1.38629
3292 0.03553 4.04828 4.04828 1.46634 0.26236 1.09861 0.40547
3293 7 3.50682 0.12175 3.55309 2.88235 7 - -
3294 1.38629 1.38629 1.38629 1.38629
3295 0.03553 4.04828 4.04828 1.46634 0.26236 1.09861 0.40547
3296 8 2.99173 3.65239 0.11033 3.56387 8 - -
3297 1.38629 1.38629 1.38629 1.38629
3298 0.03553 4.04828 4.04828 1.46634 0.26236 1.09861 0.40547
3299 9 2.99173 3.65239 0.11033 3.56387 9 - -
3300 1.38629 1.38629 1.38629 1.38629
3301 0.03553 4.04828 4.04828 1.46634 0.26236 1.09861 0.40547
3302 10 2.99173 3.65239 0.11033 3.56387 10 - -
3303 1.38629 1.38629 1.38629 1.38629
3304 0.03553 4.04828 4.04828 1.46634 0.26236 1.09861 0.40547
3305 11 3.15380 2.63654 3.19944 0.16852 11 - -
3306 1.38629 1.38629 1.38629 1.38629
3307 0.03553 4.04828 4.04828 1.46634 0.26236 1.09861 0.40547
3308 12 3.15380 2.63654 3.19944 0.16852 12 - -
3309 1.38629 1.38629 1.38629 1.38629
3310 0.03553 4.04828 4.04828 1.46634 0.26236 1.09861 0.40547
3311 13 0.13371 3.44437 2.84341 3.35218 13 - -
3312 1.38629 1.38629 1.38629 1.38629
3313 0.03553 4.04828 4.04828 1.46634 0.26236 1.09861 0.40547
3314 14 2.99173 3.65239 0.11033 3.56387 14 - -
3315 1.38629 1.38629 1.38629 1.38629
3316 0.03553 4.04828 4.04828 1.46634 0.26236 1.09861 0.40547
3317 15 3.15380 2.63654 3.19944 0.16852 15 - -
3318 1.38629 1.38629 1.38629 1.38629
3319 0.03553 4.04828 4.04828 1.46634 0.26236 1.09861 0.40547
3320 16 3.50682 0.12175 3.55309 2.88235 16 - -
3321 1.38629 1.38629 1.38629 1.38629
3322 0.03553 4.04828 4.04828 1.46634 0.26236 1.09861 0.40547
3323 17 3.50682 0.12175 3.55309 2.88235 17 - -
3324 1.38629 1.38629 1.38629 1.38629
3325 0.03553 4.04828 4.04828 1.46634 0.26236 1.09861 0.40547
3326 18 3.15380 2.63654 3.19944 0.16852 18 - -
3327 1.38629 1.38629 1.38629 1.38629
3328 0.03553 4.04828 4.04828 1.46634 0.26236 1.09861 0.40547
3329 19 2.99173 3.65239 0.11033 3.56387 19 - -
3330 1.38629 1.38629 1.38629 1.38629
3331 0.03553 4.04828 4.04828 1.46634 0.26236 1.09861 0.40547
3332 20 2.99173 3.65239 0.11033 3.56387 20 - -
3333 1.38629 1.38629 1.38629 1.38629
3334 0.03553 4.04828 4.04828 1.46634 0.26236 1.09861 0.40547
3335 21 2.99173 3.65239 0.11033 3.56387 21 - -
3336 1.38629 1.38629 1.38629 1.38629
3337 0.03553 4.04828 4.04828 1.46634 0.26236 1.09861 0.40547
3338 22 0.13371 3.44437 2.84341 3.35218 22 - -
3339 1.38629 1.38629 1.38629 1.38629
3340 0.03553 4.04828 4.04828 1.46634 0.26236 1.09861 0.40547
3341 23 2.99173 3.65239 0.11033 3.56387 23 - -
3342 1.38629 1.38629 1.38629 1.38629
3343 0.03553 4.04828 4.04828 1.46634 0.26236 1.09861 0.40547
3344 24 3.15380 2.63654 3.19944 0.16852 24 - -
3345 1.38629 1.38629 1.38629 1.38629
3346 0.03553 4.04828 4.04828 1.46634 0.26236 1.09861 0.40547
3347 25 0.13371 3.44437 2.84341 3.35218 25 - -
3348 1.38629 1.38629 1.38629 1.38629
3349 0.03553 4.04828 4.04828 1.46634 0.26236 1.09861 0.40547
3350 26 3.15380 2.63654 3.19944 0.16852 26 - -
3351 1.38629 1.38629 1.38629 1.38629
3352 0.03553 4.04828 4.04828 1.46634 0.26236 1.09861 0.40547
3353 27 2.99173 3.65239 0.11033 3.56387 27 - -
3354 1.38629 1.38629 1.38629 1.38629
3355 0.03553 4.04828 4.04828 1.46634 0.26236 1.09861 0.40547
3356 28 3.03664 2.35237 3.08677 0.20923 28 - -
3357 1.38629 1.38629 1.38629 1.38629
3358 0.03553 4.04828 4.04828 1.46634 0.26236 1.09861 0.40547
3359 29 3.15380 2.63654 3.19944 0.16852 29 - -
3360 1.38629 1.38629 1.38629 1.38629
3361 0.03553 4.04828 4.04828 1.46634 0.26236 1.09861 0.40547
3362 30 3.15380 2.63654 3.19944 0.16852 30 - -
3363 1.38629 1.38629 1.38629 1.38629
3364 0.03553 4.04828 4.04828 1.46634 0.26236 1.09861 0.40547
3365 31 2.99173 3.65239 0.11033 3.56387 31 - -
3366 1.38629 1.38629 1.38629 1.38629
3367 0.03553 4.04828 4.04828 1.46634 0.26236 1.09861 0.40547
3368 32 3.15380 2.63654 3.19944 0.16852 32 - -
3369 1.38629 1.38629 1.38629 1.38629
3370 0.03553 4.04828 4.04828 1.46634 0.26236 1.09861 0.40547
3371 33 0.13371 3.44437 2.84341 3.35218 33 - -
3372 1.38629 1.38629 1.38629 1.38629
3373 0.03553 4.04828 4.04828 1.46634 0.26236 1.09861 0.40547
3374 34 3.15380 2.63654 3.19944 0.16852 34 - -
3375 1.38629 1.38629 1.38629 1.38629
3376 0.03553 4.04828 4.04828 1.46634 0.26236 1.09861 0.40547
3377 35 3.50682 0.12175 3.55309 2.88235 35 - -
3378 1.38629 1.38629 1.38629 1.38629
3379 0.03553 4.04828 4.04828 1.46634 0.26236 1.09861 0.40547
3380 36 0.13371 3.44437 2.84341 3.35218 36 - -
3381 1.38629 1.38629 1.38629 1.38629
3382 0.03553 4.04828 4.04828 1.46634 0.26236 1.09861 0.40547
3383 37 2.99173 3.65239 0.11033 3.56387 37 - -
3384 1.38629 1.38629 1.38629 1.38629
3385 0.03553 4.04828 4.04828 1.46634 0.26236 1.09861 0.40547
3386 38 3.15380 2.63654 3.19944 0.16852 38 - -
3387 1.38629 1.38629 1.38629 1.38629
3388 0.03553 4.04828 4.04828 1.46634 0.26236 1.09861 0.40547
3389 39 2.99173 3.65239 0.11033 3.56387 39 - -
3390 1.38629 1.38629 1.38629 1.38629
3391 0.03553 4.04828 4.04828 1.46634 0.26236 1.09861 0.40547
3392 40 2.75202 2.56380 3.02067 0.21020 40 - -
3393 1.38629 1.38629 1.38629 1.38629
3394 0.03553 4.04828 4.04828 1.46634 0.26236 1.09861 0.40547
3395 41 3.50682 0.12175 3.55309 2.88235 41 - -
3396 1.38629 1.38629 1.38629 1.38629
3397 0.03553 4.04828 4.04828 1.46634 0.26236 1.09861 0.40547
3398 42 3.50682 0.12175 3.55309 2.88235 42 - -
3399 1.38629 1.38629 1.38629 1.38629
3400 0.03553 4.04828 4.04828 1.46634 0.26236 1.09861 0.40547
3401 43 2.99173 3.65239 0.11033 3.56387 43 - -
3402 1.38629 1.38629 1.38629 1.38629
3403 0.03553 4.04828 4.04828 1.46634 0.26236 1.09861 0.40547
3404 44 3.15380 2.63654 3.19944 0.16852 44 - -
3405 1.38629 1.38629 1.38629 1.38629
3406 0.03553 4.04828 4.04828 1.46634 0.26236 1.09861 0.40547
3407 45 2.95621 2.17827 3.00957 0.24152 45 - -
3408 1.38629 1.38629 1.38629 1.38629
3409 0.01792 4.03068 * 1.46634 0.26236 0.00000 *
3410 //
3411 HMMER3/b [3.0 | March 2010]
3412 NAME 3_End_Oomycota_58S_end_seven_long
3413 LENG 45
3414 ALPH DNA
3415 RF no
3416 CS no
3417 MAP yes
3418 DATE Mon Jan 23 23:03:02 2012
3419 NSEQ 7
3420 EFFN 3.421387
3421 CKSUM 3206112293
3422 STATS LOCAL MSV -7.2541 0.71932
3423 STATS LOCAL VITERBI -7.7079 0.71932
3424 STATS LOCAL FORWARD -3.8333 0.71932
3425 HMM A C G T
3426 m->m m->i m->d i->m i->i d->m d->d
3427 COMPO 1.62856 1.44393 1.29816 1.22161
3428 1.38629 1.38629 1.38629 1.38629
3429 0.03623 4.02916 4.02916 1.46634 0.26236 0.00000 *
3430 1 3.46890 0.12602 3.51682 2.85498 1 - -
3431 1.38629 1.38629 1.38629 1.38629
3432 0.03623 4.02916 4.02916 1.46634 0.26236 1.09861 0.40547
3433 2 0.13786 3.41135 2.82208 3.31597 2 - -
3434 1.38629 1.38629 1.38629 1.38629
3435 0.03623 4.02916 4.02916 1.46634 0.26236 1.09861 0.40547
3436 3 3.46890 0.12602 3.51682 2.85498 3 - -
3437 1.38629 1.38629 1.38629 1.38629
3438 0.03623 4.02916 4.02916 1.46634 0.26236 1.09861 0.40547
3439 4 3.12010 2.61515 3.16705 0.17368 4 - -
3440 1.38629 1.38629 1.38629 1.38629
3441 0.03623 4.02916 4.02916 1.46634 0.26236 1.09861 0.40547
3442 5 3.12010 2.61515 3.16705 0.17368 5 - -
3443 1.38629 1.38629 1.38629 1.38629
3444 0.03623 4.02916 4.02916 1.46634 0.26236 1.09861 0.40547
3445 6 3.46890 0.12602 3.51682 2.85498 6 - -
3446 1.38629 1.38629 1.38629 1.38629
3447 0.03623 4.02916 4.02916 1.46634 0.26236 1.09861 0.40547
3448 7 3.46890 0.12602 3.51682 2.85498 7 - -
3449 1.38629 1.38629 1.38629 1.38629
3450 0.03623 4.02916 4.02916 1.46634 0.26236 1.09861 0.40547
3451 8 2.96909 3.61920 0.11378 3.52716 8 - -
3452 1.38629 1.38629 1.38629 1.38629
3453 0.03623 4.02916 4.02916 1.46634 0.26236 1.09861 0.40547
3454 9 2.96909 3.61920 0.11378 3.52716 9 - -
3455 1.38629 1.38629 1.38629 1.38629
3456 0.03623 4.02916 4.02916 1.46634 0.26236 1.09861 0.40547
3457 10 2.96909 3.61920 0.11378 3.52716 10 - -
3458 1.38629 1.38629 1.38629 1.38629
3459 0.03623 4.02916 4.02916 1.46634 0.26236 1.09861 0.40547
3460 11 3.12010 2.61515 3.16705 0.17368 11 - -
3461 1.38629 1.38629 1.38629 1.38629
3462 0.03623 4.02916 4.02916 1.46634 0.26236 1.09861 0.40547
3463 12 3.12010 2.61515 3.16705 0.17368 12 - -
3464 1.38629 1.38629 1.38629 1.38629
3465 0.03623 4.02916 4.02916 1.46634 0.26236 1.09861 0.40547
3466 13 0.13786 3.41135 2.82208 3.31597 13 - -
3467 1.38629 1.38629 1.38629 1.38629
3468 0.03623 4.02916 4.02916 1.46634 0.26236 1.09861 0.40547
3469 14 2.96909 3.61920 0.11378 3.52716 14 - -
3470 1.38629 1.38629 1.38629 1.38629
3471 0.03623 4.02916 4.02916 1.46634 0.26236 1.09861 0.40547
3472 15 3.12010 2.61515 3.16705 0.17368 15 - -
3473 1.38629 1.38629 1.38629 1.38629
3474 0.03623 4.02916 4.02916 1.46634 0.26236 1.09861 0.40547
3475 16 3.46890 0.12602 3.51682 2.85498 16 - -
3476 1.38629 1.38629 1.38629 1.38629
3477 0.03623 4.02916 4.02916 1.46634 0.26236 1.09861 0.40547
3478 17 3.46890 0.12602 3.51682 2.85498 17 - -
3479 1.38629 1.38629 1.38629 1.38629
3480 0.03623 4.02916 4.02916 1.46634 0.26236 1.09861 0.40547
3481 18 3.12010 2.61515 3.16705 0.17368 18 - -
3482 1.38629 1.38629 1.38629 1.38629
3483 0.03623 4.02916 4.02916 1.46634 0.26236 1.09861 0.40547
3484 19 2.96909 3.61920 0.11378 3.52716 19 - -
3485 1.38629 1.38629 1.38629 1.38629
3486 0.03623 4.02916 4.02916 1.46634 0.26236 1.09861 0.40547
3487 20 2.96909 3.61920 0.11378 3.52716 20 - -
3488 1.38629 1.38629 1.38629 1.38629
3489 0.03623 4.02916 4.02916 1.46634 0.26236 1.09861 0.40547
3490 21 0.13786 3.41135 2.82208 3.31597 21 - -
3491 1.38629 1.38629 1.38629 1.38629
3492 0.03623 4.02916 4.02916 1.46634 0.26236 1.09861 0.40547
3493 22 0.13786 3.41135 2.82208 3.31597 22 - -
3494 1.38629 1.38629 1.38629 1.38629
3495 0.03623 4.02916 4.02916 1.46634 0.26236 1.09861 0.40547
3496 23 2.96909 3.61920 0.11378 3.52716 23 - -
3497 1.38629 1.38629 1.38629 1.38629
3498 0.03623 4.02916 4.02916 1.46634 0.26236 1.09861 0.40547
3499 24 3.12010 2.61515 3.16705 0.17368 24 - -
3500 1.38629 1.38629 1.38629 1.38629
3501 0.03623 4.02916 4.02916 1.46634 0.26236 1.09861 0.40547
3502 25 0.13786 3.41135 2.82208 3.31597 25 - -
3503 1.38629 1.38629 1.38629 1.38629
3504 0.03623 4.02916 4.02916 1.46634 0.26236 1.09861 0.40547
3505 26 3.12010 2.61515 3.16705 0.17368 26 - -
3506 1.38629 1.38629 1.38629 1.38629
3507 0.03623 4.02916 4.02916 1.46634 0.26236 1.09861 0.40547
3508 27 2.96909 3.61920 0.11378 3.52716 27 - -
3509 1.38629 1.38629 1.38629 1.38629
3510 0.03623 4.02916 4.02916 1.46634 0.26236 1.09861 0.40547
3511 28 3.46890 0.12602 3.51682 2.85498 28 - -
3512 1.38629 1.38629 1.38629 1.38629
3513 0.03623 4.02916 4.02916 1.46634 0.26236 1.09861 0.40547
3514 29 3.46890 0.12602 3.51682 2.85498 29 - -
3515 1.38629 1.38629 1.38629 1.38629
3516 0.03623 4.02916 4.02916 1.46634 0.26236 1.09861 0.40547
3517 30 3.12010 2.61515 3.16705 0.17368 30 - -
3518 1.38629 1.38629 1.38629 1.38629
3519 0.03623 4.02916 4.02916 1.46634 0.26236 1.09861 0.40547
3520 31 2.96909 3.61920 0.11378 3.52716 31 - -
3521 1.38629 1.38629 1.38629 1.38629
3522 0.03623 4.02916 4.02916 1.46634 0.26236 1.09861 0.40547
3523 32 3.12010 2.61515 3.16705 0.17368 32 - -
3524 1.38629 1.38629 1.38629 1.38629
3525 0.03623 4.02916 4.02916 1.46634 0.26236 1.09861 0.40547
3526 33 0.13786 3.41135 2.82208 3.31597 33 - -
3527 1.38629 1.38629 1.38629 1.38629
3528 0.03623 4.02916 4.02916 1.46634 0.26236 1.09861 0.40547
3529 34 3.12010 2.61515 3.16705 0.17368 34 - -
3530 1.38629 1.38629 1.38629 1.38629
3531 0.03623 4.02916 4.02916 1.46634 0.26236 1.09861 0.40547
3532 35 3.46890 0.12602 3.51682 2.85498 35 - -
3533 1.38629 1.38629 1.38629 1.38629
3534 0.03623 4.02916 4.02916 1.46634 0.26236 1.09861 0.40547
3535 36 0.13786 3.41135 2.82208 3.31597 36 - -
3536 1.38629 1.38629 1.38629 1.38629
3537 0.03623 4.02916 4.02916 1.46634 0.26236 1.09861 0.40547
3538 37 2.96909 3.61920 0.11378 3.52716 37 - -
3539 1.38629 1.38629 1.38629 1.38629
3540 0.03623 4.02916 4.02916 1.46634 0.26236 1.09861 0.40547
3541 38 3.12010 2.61515 3.16705 0.17368 38 - -
3542 1.38629 1.38629 1.38629 1.38629
3543 0.03623 4.02916 4.02916 1.46634 0.26236 1.09861 0.40547
3544 39 2.96909 3.61920 0.11378 3.52716 39 - -
3545 1.38629 1.38629 1.38629 1.38629
3546 0.03623 4.02916 4.02916 1.46634 0.26236 1.09861 0.40547
3547 40 3.12010 2.61515 3.16705 0.17368 40 - -
3548 1.38629 1.38629 1.38629 1.38629
3549 0.03623 4.02916 4.02916 1.46634 0.26236 1.09861 0.40547
3550 41 3.46890 0.12602 3.51682 2.85498 41 - -
3551 1.38629 1.38629 1.38629 1.38629
3552 0.03623 4.02916 4.02916 1.46634 0.26236 1.09861 0.40547
3553 42 2.96909 3.61920 0.11378 3.52716 42 - -
3554 1.38629 1.38629 1.38629 1.38629
3555 0.03623 4.02916 4.02916 1.46634 0.26236 1.09861 0.40547
3556 43 2.12530 2.15195 1.15062 0.80318 43 - -
3557 1.38629 1.38629 1.38629 1.38629
3558 0.03623 4.02916 4.02916 1.46634 0.26236 1.09861 0.40547
3559 44 3.12010 2.61515 3.16705 0.17368 44 - -
3560 1.38629 1.38629 1.38629 1.38629
3561 0.03623 4.02916 4.02916 1.46634 0.26236 1.09861 0.40547
3562 45 0.13786 3.41135 2.82208 3.31597 45 - -
3563 1.38629 1.38629 1.38629 1.38629
3564 0.01828 4.01121 * 1.46634 0.26236 0.00000 *
3565 //
3566 HMMER3/b [3.0 | March 2010]
3567 NAME 3_End_Oomycota_58S_end_seventeen_long
3568 LENG 45
3569 ALPH DNA
3570 RF no
3571 CS no
3572 MAP yes
3573 DATE Mon Jan 23 23:05:06 2012
3574 NSEQ 7
3575 EFFN 3.325684
3576 CKSUM 4279403002
3577 STATS LOCAL MSV -8.1353 0.71933
3578 STATS LOCAL VITERBI -7.7508 0.71933
3579 STATS LOCAL FORWARD -4.0417 0.71933
3580 HMM A C G T
3581 m->m m->i m->d i->m i->i d->m d->d
3582 COMPO 1.63501 1.44343 1.38603 1.14298
3583 1.38629 1.38629 1.38629 1.38629
3584 0.03687 4.01199 4.01199 1.46634 0.26236 0.00000 *
3585 1 3.43422 0.13008 3.48363 2.82980 1 - -
3586 1.38629 1.38629 1.38629 1.38629
3587 0.03687 4.01199 4.01199 1.46634 0.26236 1.09861 0.40547
3588 2 0.14177 3.38122 2.80255 3.28298 2 - -
3589 1.38629 1.38629 1.38629 1.38629
3590 0.03687 4.01199 4.01199 1.46634 0.26236 1.09861 0.40547
3591 3 3.43422 0.13008 3.48363 2.82980 3 - -
3592 1.38629 1.38629 1.38629 1.38629
3593 0.03687 4.01199 4.01199 1.46634 0.26236 1.09861 0.40547
3594 4 3.08958 2.59576 3.13770 0.17852 4 - -
3595 1.38629 1.38629 1.38629 1.38629
3596 0.03687 4.01199 4.01199 1.46634 0.26236 1.09861 0.40547
3597 5 3.08958 2.59576 3.13770 0.17852 5 - -
3598 1.38629 1.38629 1.38629 1.38629
3599 0.03687 4.01199 4.01199 1.46634 0.26236 1.09861 0.40547
3600 6 3.08958 2.59576 3.13770 0.17852 6 - -
3601 1.38629 1.38629 1.38629 1.38629
3602 0.03687 4.01199 4.01199 1.46634 0.26236 1.09861 0.40547
3603 7 3.43422 0.13008 3.48363 2.82980 7 - -
3604 1.38629 1.38629 1.38629 1.38629
3605 0.03687 4.01199 4.01199 1.46634 0.26236 1.09861 0.40547
3606 8 2.94820 3.58873 0.11705 3.49350 8 - -
3607 1.38629 1.38629 1.38629 1.38629
3608 0.03687 4.01199 4.01199 1.46634 0.26236 1.09861 0.40547
3609 9 2.94820 3.58873 0.11705 3.49350 9 - -
3610 1.38629 1.38629 1.38629 1.38629
3611 0.03687 4.01199 4.01199 1.46634 0.26236 1.09861 0.40547
3612 10 2.94820 3.58873 0.11705 3.49350 10 - -
3613 1.38629 1.38629 1.38629 1.38629
3614 0.03687 4.01199 4.01199 1.46634 0.26236 1.09861 0.40547
3615 11 3.08958 2.59576 3.13770 0.17852 11 - -
3616 1.38629 1.38629 1.38629 1.38629
3617 0.03687 4.01199 4.01199 1.46634 0.26236 1.09861 0.40547
3618 12 3.08958 2.59576 3.13770 0.17852 12 - -
3619 1.38629 1.38629 1.38629 1.38629
3620 0.03687 4.01199 4.01199 1.46634 0.26236 1.09861 0.40547
3621 13 3.43422 0.13008 3.48363 2.82980 13 - -
3622 1.38629 1.38629 1.38629 1.38629
3623 0.03687 4.01199 4.01199 1.46634 0.26236 1.09861 0.40547
3624 14 3.08958 2.59576 3.13770 0.17852 14 - -
3625 1.38629 1.38629 1.38629 1.38629
3626 0.03687 4.01199 4.01199 1.46634 0.26236 1.09861 0.40547
3627 15 0.14177 3.38122 2.80255 3.28298 15 - -
3628 1.38629 1.38629 1.38629 1.38629
3629 0.03687 4.01199 4.01199 1.46634 0.26236 1.09861 0.40547
3630 16 3.43422 0.13008 3.48363 2.82980 16 - -
3631 1.38629 1.38629 1.38629 1.38629
3632 0.03687 4.01199 4.01199 1.46634 0.26236 1.09861 0.40547
3633 17 3.43422 0.13008 3.48363 2.82980 17 - -
3634 1.38629 1.38629 1.38629 1.38629
3635 0.03687 4.01199 4.01199 1.46634 0.26236 1.09861 0.40547
3636 18 3.08958 2.59576 3.13770 0.17852 18 - -
3637 1.38629 1.38629 1.38629 1.38629
3638 0.03687 4.01199 4.01199 1.46634 0.26236 1.09861 0.40547
3639 19 2.94820 3.58873 0.11705 3.49350 19 - -
3640 1.38629 1.38629 1.38629 1.38629
3641 0.03687 4.01199 4.01199 1.46634 0.26236 1.09861 0.40547
3642 20 2.94820 3.58873 0.11705 3.49350 20 - -
3643 1.38629 1.38629 1.38629 1.38629
3644 0.03687 4.01199 4.01199 1.46634 0.26236 1.09861 0.40547
3645 21 0.14177 3.38122 2.80255 3.28298 21 - -
3646 1.38629 1.38629 1.38629 1.38629
3647 0.03687 4.01199 4.01199 1.46634 0.26236 1.09861 0.40547
3648 22 0.14177 3.38122 2.80255 3.28298 22 - -
3649 1.38629 1.38629 1.38629 1.38629
3650 0.03687 4.01199 4.01199 1.46634 0.26236 1.09861 0.40547
3651 23 2.94820 3.58873 0.11705 3.49350 23 - -
3652 1.38629 1.38629 1.38629 1.38629
3653 0.03687 4.01199 4.01199 1.46634 0.26236 1.09861 0.40547
3654 24 3.08958 2.59576 3.13770 0.17852 24 - -
3655 1.38629 1.38629 1.38629 1.38629
3656 0.03687 4.01199 4.01199 1.46634 0.26236 1.09861 0.40547
3657 25 0.14177 3.38122 2.80255 3.28298 25 - -
3658 1.38629 1.38629 1.38629 1.38629
3659 0.03687 4.01199 4.01199 1.46634 0.26236 1.09861 0.40547
3660 26 3.08958 2.59576 3.13770 0.17852 26 - -
3661 1.38629 1.38629 1.38629 1.38629
3662 0.03687 4.01199 4.01199 1.46634 0.26236 1.09861 0.40547
3663 27 2.94820 3.58873 0.11705 3.49350 27 - -
3664 1.38629 1.38629 1.38629 1.38629
3665 0.03687 4.01199 4.01199 1.46634 0.26236 1.09861 0.40547
3666 28 3.08958 2.59576 3.13770 0.17852 28 - -
3667 1.38629 1.38629 1.38629 1.38629
3668 0.03687 4.01199 4.01199 1.46634 0.26236 1.09861 0.40547
3669 29 3.43422 0.13008 3.48363 2.82980 29 - -
3670 1.38629 1.38629 1.38629 1.38629
3671 0.03687 4.01199 4.01199 1.46634 0.26236 1.09861 0.40547
3672 30 3.08958 2.59576 3.13770 0.17852 30 - -
3673 1.38629 1.38629 1.38629 1.38629
3674 0.03687 4.01199 4.01199 1.46634 0.26236 1.09861 0.40547
3675 31 2.94820 3.58873 0.11705 3.49350 31 - -
3676 1.38629 1.38629 1.38629 1.38629
3677 0.03687 4.01199 4.01199 1.46634 0.26236 1.09861 0.40547
3678 32 3.08958 2.59576 3.13770 0.17852 32 - -
3679 1.38629 1.38629 1.38629 1.38629
3680 0.03687 4.01199 4.01199 1.46634 0.26236 1.09861 0.40547
3681 33 0.14177 3.38122 2.80255 3.28298 33 - -
3682 1.38629 1.38629 1.38629 1.38629
3683 0.03687 4.01199 4.01199 1.46634 0.26236 1.09861 0.40547
3684 34 3.08958 2.59576 3.13770 0.17852 34 - -
3685 1.38629 1.38629 1.38629 1.38629
3686 0.03687 4.01199 4.01199 1.46634 0.26236 1.09861 0.40547
3687 35 3.43422 0.13008 3.48363 2.82980 35 - -
3688 1.38629 1.38629 1.38629 1.38629
3689 0.03687 4.01199 4.01199 1.46634 0.26236 1.09861 0.40547
3690 36 0.14177 3.38122 2.80255 3.28298 36 - -
3691 1.38629 1.38629 1.38629 1.38629
3692 0.03687 4.01199 4.01199 1.46634 0.26236 1.09861 0.40547
3693 37 2.94820 3.58873 0.11705 3.49350 37 - -
3694 1.38629 1.38629 1.38629 1.38629
3695 0.03687 4.01199 4.01199 1.46634 0.26236 1.09861 0.40547
3696 38 3.08958 2.59576 3.13770 0.17852 38 - -
3697 1.38629 1.38629 1.38629 1.38629
3698 0.03687 4.01199 4.01199 1.46634 0.26236 1.09861 0.40547
3699 39 2.94820 3.58873 0.11705 3.49350 39 - -
3700 1.38629 1.38629 1.38629 1.38629
3701 0.03687 4.01199 4.01199 1.46634 0.26236 1.09861 0.40547
3702 40 3.08958 2.59576 3.13770 0.17852 40 - -
3703 1.38629 1.38629 1.38629 1.38629
3704 0.03687 4.01199 4.01199 1.46634 0.26236 1.09861 0.40547
3705 41 3.43422 0.13008 3.48363 2.82980 41 - -
3706 1.38629 1.38629 1.38629 1.38629
3707 0.03687 4.01199 4.01199 1.46634 0.26236 1.09861 0.40547
3708 42 3.43422 0.13008 3.48363 2.82980 42 - -
3709 1.38629 1.38629 1.38629 1.38629
3710 0.03687 4.01199 4.01199 1.46634 0.26236 1.09861 0.40547
3711 43 2.94820 3.58873 0.11705 3.49350 43 - -
3712 1.38629 1.38629 1.38629 1.38629
3713 0.03687 4.01199 4.01199 1.46634 0.26236 1.09861 0.40547
3714 44 3.08958 2.59576 3.13770 0.17852 44 - -
3715 1.38629 1.38629 1.38629 1.38629
3716 0.03687 4.01199 4.01199 1.46634 0.26236 1.09861 0.40547
3717 45 0.14177 3.38122 2.80255 3.28298 45 - -
3718 1.38629 1.38629 1.38629 1.38629
3719 0.01860 3.99373 * 1.46634 0.26236 0.00000 *
3720 //
3721 HMMER3/b [3.0 | March 2010]
3722 NAME 3_End_Oomycota_58S_end_sixa_long
3723 LENG 45
3724 ALPH DNA
3725 RF no
3726 CS no
3727 MAP yes
3728 DATE Mon Jan 23 23:02:43 2012
3729 NSEQ 61
3730 EFFN 3.503479
3731 CKSUM 1654444282
3732 STATS LOCAL MSV -7.3075 0.71932
3733 STATS LOCAL VITERBI -7.9016 0.71932
3734 STATS LOCAL FORWARD -3.9539 0.71932
3735 HMM A C G T
3736 m->m m->i m->d i->m i->i d->m d->d
3737 COMPO 1.71253 1.45084 1.31464 1.14997
3738 1.38629 1.38629 1.38629 1.38629
3739 0.03570 4.04366 4.04366 1.46634 0.26236 0.00000 *
3740 1 3.49772 0.12276 3.54439 2.87580 1 - -
3741 1.38629 1.38629 1.38629 1.38629
3742 0.03570 4.04366 4.04366 1.46634 0.26236 1.09861 0.40547
3743 2 0.13470 3.43644 2.83829 3.34348 2 - -
3744 1.38629 1.38629 1.38629 1.38629
3745 0.03570 4.04366 4.04366 1.46634 0.26236 1.09861 0.40547
3746 3 3.49772 0.12276 3.54439 2.87580 3 - -
3747 1.38629 1.38629 1.38629 1.38629
3748 0.03570 4.04366 4.04366 1.46634 0.26236 1.09861 0.40547
3749 4 3.14568 2.63139 3.19163 0.16975 4 - -
3750 1.38629 1.38629 1.38629 1.38629
3751 0.03570 4.04366 4.04366 1.46634 0.26236 1.09861 0.40547
3752 5 3.14568 2.63139 3.19163 0.16975 5 - -
3753 1.38629 1.38629 1.38629 1.38629
3754 0.03570 4.04366 4.04366 1.46634 0.26236 1.09861 0.40547
3755 6 3.14568 2.63139 3.19163 0.16975 6 - -
3756 1.38629 1.38629 1.38629 1.38629
3757 0.03570 4.04366 4.04366 1.46634 0.26236 1.09861 0.40547
3758 7 3.49772 0.12276 3.54439 2.87580 7 - -
3759 1.38629 1.38629 1.38629 1.38629
3760 0.03570 4.04366 4.04366 1.46634 0.26236 1.09861 0.40547
3761 8 2.98632 3.64444 0.11114 3.55507 8 - -
3762 1.38629 1.38629 1.38629 1.38629
3763 0.03570 4.04366 4.04366 1.46634 0.26236 1.09861 0.40547
3764 9 2.98632 3.64444 0.11114 3.55507 9 - -
3765 1.38629 1.38629 1.38629 1.38629
3766 0.03570 4.04366 4.04366 1.46634 0.26236 1.09861 0.40547
3767 10 2.98632 3.64444 0.11114 3.55507 10 - -
3768 1.38629 1.38629 1.38629 1.38629
3769 0.03570 4.04366 4.04366 1.46634 0.26236 1.09861 0.40547
3770 11 3.14568 2.63139 3.19163 0.16975 11 - -
3771 1.38629 1.38629 1.38629 1.38629
3772 0.03570 4.04366 4.04366 1.46634 0.26236 1.09861 0.40547
3773 12 3.14568 2.63139 3.19163 0.16975 12 - -
3774 1.38629 1.38629 1.38629 1.38629
3775 0.03570 4.04366 4.04366 1.46634 0.26236 1.09861 0.40547
3776 13 0.13470 3.43644 2.83829 3.34348 13 - -
3777 1.38629 1.38629 1.38629 1.38629
3778 0.03570 4.04366 4.04366 1.46634 0.26236 1.09861 0.40547
3779 14 2.98632 3.64444 0.11114 3.55507 14 - -
3780 1.38629 1.38629 1.38629 1.38629
3781 0.03570 4.04366 4.04366 1.46634 0.26236 1.09861 0.40547
3782 15 3.14568 2.63139 3.19163 0.16975 15 - -
3783 1.38629 1.38629 1.38629 1.38629
3784 0.03570 4.04366 4.04366 1.46634 0.26236 1.09861 0.40547
3785 16 3.49772 0.12276 3.54439 2.87580 16 - -
3786 1.38629 1.38629 1.38629 1.38629
3787 0.03570 4.04366 4.04366 1.46634 0.26236 1.09861 0.40547
3788 17 3.49772 0.12276 3.54439 2.87580 17 - -
3789 1.38629 1.38629 1.38629 1.38629
3790 0.03570 4.04366 4.04366 1.46634 0.26236 1.09861 0.40547
3791 18 3.14568 2.63139 3.19163 0.16975 18 - -
3792 1.38629 1.38629 1.38629 1.38629
3793 0.03570 4.04366 4.04366 1.46634 0.26236 1.09861 0.40547
3794 19 2.98632 3.64444 0.11114 3.55507 19 - -
3795 1.38629 1.38629 1.38629 1.38629
3796 0.03570 4.04366 4.04366 1.46634 0.26236 1.09861 0.40547
3797 20 2.98632 3.64444 0.11114 3.55507 20 - -
3798 1.38629 1.38629 1.38629 1.38629
3799 0.03570 4.04366 4.04366 1.46634 0.26236 1.09861 0.40547
3800 21 0.13470 3.43644 2.83829 3.34348 21 - -
3801 1.38629 1.38629 1.38629 1.38629
3802 0.03570 4.04366 4.04366 1.46634 0.26236 1.09861 0.40547
3803 22 0.13470 3.43644 2.83829 3.34348 22 - -
3804 1.38629 1.38629 1.38629 1.38629
3805 0.03570 4.04366 4.04366 1.46634 0.26236 1.09861 0.40547
3806 23 2.98632 3.64444 0.11114 3.55507 23 - -
3807 1.38629 1.38629 1.38629 1.38629
3808 0.03570 4.04366 4.04366 1.46634 0.26236 1.09861 0.40547
3809 24 3.14568 2.63139 3.19163 0.16975 24 - -
3810 1.38629 1.38629 1.38629 1.38629
3811 0.03570 4.04366 4.04366 1.46634 0.26236 1.09861 0.40547
3812 25 0.13470 3.43644 2.83829 3.34348 25 - -
3813 1.38629 1.38629 1.38629 1.38629
3814 0.03570 4.04366 4.04366 1.46634 0.26236 1.09861 0.40547
3815 26 3.14568 2.63139 3.19163 0.16975 26 - -
3816 1.38629 1.38629 1.38629 1.38629
3817 0.03570 4.04366 4.04366 1.46634 0.26236 1.09861 0.40547
3818 27 2.98632 3.64444 0.11114 3.55507 27 - -
3819 1.38629 1.38629 1.38629 1.38629
3820 0.03570 4.04366 4.04366 1.46634 0.26236 1.09861 0.40547
3821 28 2.60573 1.49842 2.67155 0.45646 28 - -
3822 1.38629 1.38629 1.38629 1.38629
3823 0.03570 4.04366 4.04366 1.46634 0.26236 1.09861 0.40547
3824 29 3.49772 0.12276 3.54439 2.87580 29 - -
3825 1.38629 1.38629 1.38629 1.38629
3826 0.03570 4.04366 4.04366 1.46634 0.26236 1.09861 0.40547
3827 30 3.14568 2.63139 3.19163 0.16975 30 - -
3828 1.38629 1.38629 1.38629 1.38629
3829 0.03570 4.04366 4.04366 1.46634 0.26236 1.09861 0.40547
3830 31 2.98632 3.64444 0.11114 3.55507 31 - -
3831 1.38629 1.38629 1.38629 1.38629
3832 0.03570 4.04366 4.04366 1.46634 0.26236 1.09861 0.40547
3833 32 3.14568 2.63139 3.19163 0.16975 32 - -
3834 1.38629 1.38629 1.38629 1.38629
3835 0.03570 4.04366 4.04366 1.46634 0.26236 1.09861 0.40547
3836 33 0.13470 3.43644 2.83829 3.34348 33 - -
3837 1.38629 1.38629 1.38629 1.38629
3838 0.03570 4.04366 4.04366 1.46634 0.26236 1.09861 0.40547
3839 34 3.14568 2.63139 3.19163 0.16975 34 - -
3840 1.38629 1.38629 1.38629 1.38629
3841 0.03570 4.04366 4.04366 1.46634 0.26236 1.09861 0.40547
3842 35 3.49772 0.12276 3.54439 2.87580 35 - -
3843 1.38629 1.38629 1.38629 1.38629
3844 0.03570 4.04366 4.04366 1.46634 0.26236 1.09861 0.40547
3845 36 0.13470 3.43644 2.83829 3.34348 36 - -
3846 1.38629 1.38629 1.38629 1.38629
3847 0.03570 4.04366 4.04366 1.46634 0.26236 1.09861 0.40547
3848 37 2.98632 3.64444 0.11114 3.55507 37 - -
3849 1.38629 1.38629 1.38629 1.38629
3850 0.03570 4.04366 4.04366 1.46634 0.26236 1.09861 0.40547
3851 38 3.14568 2.63139 3.19163 0.16975 38 - -
3852 1.38629 1.38629 1.38629 1.38629
3853 0.03570 4.04366 4.04366 1.46634 0.26236 1.09861 0.40547
3854 39 2.98632 3.64444 0.11114 3.55507 39 - -
3855 1.38629 1.38629 1.38629 1.38629
3856 0.03570 4.04366 4.04366 1.46634 0.26236 1.09861 0.40547
3857 40 3.14568 2.63139 3.19163 0.16975 40 - -
3858 1.38629 1.38629 1.38629 1.38629
3859 0.03570 4.04366 4.04366 1.46634 0.26236 1.09861 0.40547
3860 41 3.49772 0.12276 3.54439 2.87580 41 - -
3861 1.38629 1.38629 1.38629 1.38629
3862 0.03570 4.04366 4.04366 1.46634 0.26236 1.09861 0.40547
3863 42 3.49772 0.12276 3.54439 2.87580 42 - -
3864 1.38629 1.38629 1.38629 1.38629
3865 0.03570 4.04366 4.04366 1.46634 0.26236 1.09861 0.40547
3866 43 2.98632 3.64444 0.11114 3.55507 43 - -
3867 1.38629 1.38629 1.38629 1.38629
3868 0.03570 4.04366 4.04366 1.46634 0.26236 1.09861 0.40547
3869 44 3.14568 2.63139 3.19163 0.16975 44 - -
3870 1.38629 1.38629 1.38629 1.38629
3871 0.03570 4.04366 4.04366 1.46634 0.26236 1.09861 0.40547
3872 45 1.86867 0.40815 2.56286 2.26621 45 - -
3873 1.38629 1.38629 1.38629 1.38629
3874 0.01801 4.02597 * 1.46634 0.26236 0.00000 *
3875 //
3876 HMMER3/b [3.0 | March 2010]
3877 NAME 3_End_Oomycota_58S_end_sixb_long
3878 LENG 45
3879 ALPH DNA
3880 RF no
3881 CS no
3882 MAP yes
3883 DATE Mon Jan 23 23:02:50 2012
3884 NSEQ 102
3885 EFFN 3.296448
3886 CKSUM 2052102467
3887 STATS LOCAL MSV -8.0385 0.71933
3888 STATS LOCAL VITERBI -7.7229 0.71933
3889 STATS LOCAL FORWARD -3.9548 0.71933
3890 HMM A C G T
3891 m->m m->i m->d i->m i->i d->m d->d
3892 COMPO 1.72566 1.31760 1.32137 1.24689
3893 1.38629 1.38629 1.38629 1.38629
3894 0.03707 4.00669 4.00669 1.46634 0.26236 0.00000 *
3895 1 3.42339 0.13137 3.47326 2.82191 1 - -
3896 1.38629 1.38629 1.38629 1.38629
3897 0.03707 4.00669 4.00669 1.46634 0.26236 1.09861 0.40547
3898 2 0.14301 3.37183 2.79644 3.27269 2 - -
3899 1.38629 1.38629 1.38629 1.38629
3900 0.03707 4.00669 4.00669 1.46634 0.26236 1.09861 0.40547
3901 3 3.42339 0.13137 3.47326 2.82191 3 - -
3902 1.38629 1.38629 1.38629 1.38629
3903 0.03707 4.00669 4.00669 1.46634 0.26236 1.09861 0.40547
3904 4 3.08010 2.58973 3.12858 0.18005 4 - -
3905 1.38629 1.38629 1.38629 1.38629
3906 0.03707 4.00669 4.00669 1.46634 0.26236 1.09861 0.40547
3907 5 3.08010 2.58973 3.12858 0.18005 5 - -
3908 1.38629 1.38629 1.38629 1.38629
3909 0.03707 4.00669 4.00669 1.46634 0.26236 1.09861 0.40547
3910 6 3.42339 0.13137 3.47326 2.82191 6 - -
3911 1.38629 1.38629 1.38629 1.38629
3912 0.03707 4.00669 4.00669 1.46634 0.26236 1.09861 0.40547
3913 7 3.42339 0.13137 3.47326 2.82191 7 - -
3914 1.38629 1.38629 1.38629 1.38629
3915 0.03707 4.00669 4.00669 1.46634 0.26236 1.09861 0.40547
3916 8 2.94164 3.57919 0.11810 3.48297 8 - -
3917 1.38629 1.38629 1.38629 1.38629
3918 0.03707 4.00669 4.00669 1.46634 0.26236 1.09861 0.40547
3919 9 2.94164 3.57919 0.11810 3.48297 9 - -
3920 1.38629 1.38629 1.38629 1.38629
3921 0.03707 4.00669 4.00669 1.46634 0.26236 1.09861 0.40547
3922 10 2.94164 3.57919 0.11810 3.48297 10 - -
3923 1.38629 1.38629 1.38629 1.38629
3924 0.03707 4.00669 4.00669 1.46634 0.26236 1.09861 0.40547
3925 11 3.08010 2.58973 3.12858 0.18005 11 - -
3926 1.38629 1.38629 1.38629 1.38629
3927 0.03707 4.00669 4.00669 1.46634 0.26236 1.09861 0.40547
3928 12 3.08010 2.58973 3.12858 0.18005 12 - -
3929 1.38629 1.38629 1.38629 1.38629
3930 0.03707 4.00669 4.00669 1.46634 0.26236 1.09861 0.40547
3931 13 3.42339 0.13137 3.47326 2.82191 13 - -
3932 1.38629 1.38629 1.38629 1.38629
3933 0.03707 4.00669 4.00669 1.46634 0.26236 1.09861 0.40547
3934 14 2.94164 3.57919 0.11810 3.48297 14 - -
3935 1.38629 1.38629 1.38629 1.38629
3936 0.03707 4.00669 4.00669 1.46634 0.26236 1.09861 0.40547
3937 15 3.08010 2.58973 3.12858 0.18005 15 - -
3938 1.38629 1.38629 1.38629 1.38629
3939 0.03707 4.00669 4.00669 1.46634 0.26236 1.09861 0.40547
3940 16 3.42339 0.13137 3.47326 2.82191 16 - -
3941 1.38629 1.38629 1.38629 1.38629
3942 0.03707 4.00669 4.00669 1.46634 0.26236 1.09861 0.40547
3943 17 3.42339 0.13137 3.47326 2.82191 17 - -
3944 1.38629 1.38629 1.38629 1.38629
3945 0.03707 4.00669 4.00669 1.46634 0.26236 1.09861 0.40547
3946 18 3.08010 2.58973 3.12858 0.18005 18 - -
3947 1.38629 1.38629 1.38629 1.38629
3948 0.03707 4.00669 4.00669 1.46634 0.26236 1.09861 0.40547
3949 19 2.94164 3.57919 0.11810 3.48297 19 - -
3950 1.38629 1.38629 1.38629 1.38629
3951 0.03707 4.00669 4.00669 1.46634 0.26236 1.09861 0.40547
3952 20 2.94164 3.57919 0.11810 3.48297 20 - -
3953 1.38629 1.38629 1.38629 1.38629
3954 0.03707 4.00669 4.00669 1.46634 0.26236 1.09861 0.40547
3955 21 0.14301 3.37183 2.79644 3.27269 21 - -
3956 1.38629 1.38629 1.38629 1.38629
3957 0.03707 4.00669 4.00669 1.46634 0.26236 1.09861 0.40547
3958 22 0.14301 3.37183 2.79644 3.27269 22 - -
3959 1.38629 1.38629 1.38629 1.38629
3960 0.03707 4.00669 4.00669 1.46634 0.26236 1.09861 0.40547
3961 23 2.94164 3.57919 0.11810 3.48297 23 - -
3962 1.38629 1.38629 1.38629 1.38629
3963 0.03707 4.00669 4.00669 1.46634 0.26236 1.09861 0.40547
3964 24 3.08010 2.58973 3.12858 0.18005 24 - -
3965 1.38629 1.38629 1.38629 1.38629
3966 0.03707 4.00669 4.00669 1.46634 0.26236 1.09861 0.40547
3967 25 0.14301 3.37183 2.79644 3.27269 25 - -
3968 1.38629 1.38629 1.38629 1.38629
3969 0.03707 4.00669 4.00669 1.46634 0.26236 1.09861 0.40547
3970 26 3.08010 2.58973 3.12858 0.18005 26 - -
3971 1.38629 1.38629 1.38629 1.38629
3972 0.03707 4.00669 4.00669 1.46634 0.26236 1.09861 0.40547
3973 27 2.94164 3.57919 0.11810 3.48297 27 - -
3974 1.38629 1.38629 1.38629 1.38629
3975 0.03707 4.00669 4.00669 1.46634 0.26236 1.09861 0.40547
3976 28 3.30844 0.15686 3.36163 2.60466 28 - -
3977 1.38629 1.38629 1.38629 1.38629
3978 0.03707 4.00669 4.00669 1.46634 0.26236 1.09861 0.40547
3979 29 3.23739 0.17438 3.29275 2.48169 29 - -
3980 1.38629 1.38629 1.38629 1.38629
3981 0.03707 4.00669 4.00669 1.46634 0.26236 1.09861 0.40547
3982 30 3.08010 2.58973 3.12858 0.18005 30 - -
3983 1.38629 1.38629 1.38629 1.38629
3984 0.03707 4.00669 4.00669 1.46634 0.26236 1.09861 0.40547
3985 31 2.94164 3.57919 0.11810 3.48297 31 - -
3986 1.38629 1.38629 1.38629 1.38629
3987 0.03707 4.00669 4.00669 1.46634 0.26236 1.09861 0.40547
3988 32 3.08010 2.58973 3.12858 0.18005 32 - -
3989 1.38629 1.38629 1.38629 1.38629
3990 0.03707 4.00669 4.00669 1.46634 0.26236 1.09861 0.40547
3991 33 0.14301 3.37183 2.79644 3.27269 33 - -
3992 1.38629 1.38629 1.38629 1.38629
3993 0.03707 4.00669 4.00669 1.46634 0.26236 1.09861 0.40547
3994 34 3.08010 2.58973 3.12858 0.18005 34 - -
3995 1.38629 1.38629 1.38629 1.38629
3996 0.03707 4.00669 4.00669 1.46634 0.26236 1.09861 0.40547
3997 35 3.42339 0.13137 3.47326 2.82191 35 - -
3998 1.38629 1.38629 1.38629 1.38629
3999 0.03707 4.00669 4.00669 1.46634 0.26236 1.09861 0.40547
4000 36 0.14301 3.37183 2.79644 3.27269 36 - -
4001 1.38629 1.38629 1.38629 1.38629
4002 0.03707 4.00669 4.00669 1.46634 0.26236 1.09861 0.40547
4003 37 2.94164 3.57919 0.11810 3.48297 37 - -
4004 1.38629 1.38629 1.38629 1.38629
4005 0.03707 4.00669 4.00669 1.46634 0.26236 1.09861 0.40547
4006 38 3.08010 2.58973 3.12858 0.18005 38 - -
4007 1.38629 1.38629 1.38629 1.38629
4008 0.03707 4.00669 4.00669 1.46634 0.26236 1.09861 0.40547
4009 39 2.94164 3.57919 0.11810 3.48297 39 - -
4010 1.38629 1.38629 1.38629 1.38629
4011 0.03707 4.00669 4.00669 1.46634 0.26236 1.09861 0.40547
4012 40 3.08010 2.58973 3.12858 0.18005 40 - -
4013 1.38629 1.38629 1.38629 1.38629
4014 0.03707 4.00669 4.00669 1.46634 0.26236 1.09861 0.40547
4015 41 3.42339 0.13137 3.47326 2.82191 41 - -
4016 1.38629 1.38629 1.38629 1.38629
4017 0.03707 4.00669 4.00669 1.46634 0.26236 1.09861 0.40547
4018 42 3.42339 0.13137 3.47326 2.82191 42 - -
4019 1.38629 1.38629 1.38629 1.38629
4020 0.03707 4.00669 4.00669 1.46634 0.26236 1.09861 0.40547
4021 43 2.94164 3.57919 0.11810 3.48297 43 - -
4022 1.38629 1.38629 1.38629 1.38629
4023 0.03707 4.00669 4.00669 1.46634 0.26236 1.09861 0.40547
4024 44 3.08010 2.58973 3.12858 0.18005 44 - -
4025 1.38629 1.38629 1.38629 1.38629
4026 0.03707 4.00669 4.00669 1.46634 0.26236 1.09861 0.40547
4027 45 0.14301 3.37183 2.79644 3.27269 45 - -
4028 1.38629 1.38629 1.38629 1.38629
4029 0.01870 3.98833 * 1.46634 0.26236 0.00000 *
4030 //
4031 HMMER3/b [3.0 | March 2010]
4032 NAME 3_End_Oomycota_58S_end_sixteen_long
4033 LENG 45
4034 ALPH DNA
4035 RF no
4036 CS no
4037 MAP yes
4038 DATE Mon Jan 23 23:04:49 2012
4039 NSEQ 142
4040 EFFN 3.436462
4041 CKSUM 3135158707
4042 STATS LOCAL MSV -7.3205 0.71932
4043 STATS LOCAL VITERBI -7.7781 0.71932
4044 STATS LOCAL FORWARD -3.9816 0.71932
4045 HMM A C G T
4046 m->m m->i m->d i->m i->i d->m d->d
4047 COMPO 1.65337 1.32188 1.37654 1.23956
4048 1.38629 1.38629 1.38629 1.38629
4049 0.03613 4.03184 4.03184 1.46634 0.26236 0.00000 *
4050 1 3.47425 0.12541 3.52195 2.85885 1 - -
4051 1.38629 1.38629 1.38629 1.38629
4052 0.03613 4.03184 4.03184 1.46634 0.26236 1.09861 0.40547
4053 2 0.13726 3.41601 2.82509 3.32108 2 - -
4054 1.38629 1.38629 1.38629 1.38629
4055 0.03613 4.03184 4.03184 1.46634 0.26236 1.09861 0.40547
4056 3 3.47425 0.12541 3.52195 2.85885 3 - -
4057 1.38629 1.38629 1.38629 1.38629
4058 0.03613 4.03184 4.03184 1.46634 0.26236 1.09861 0.40547
4059 4 3.12484 2.61816 3.17160 0.17295 4 - -
4060 1.38629 1.38629 1.38629 1.38629
4061 0.03613 4.03184 4.03184 1.46634 0.26236 1.09861 0.40547
4062 5 3.12484 2.61816 3.17160 0.17295 5 - -
4063 1.38629 1.38629 1.38629 1.38629
4064 0.03613 4.03184 4.03184 1.46634 0.26236 1.09861 0.40547
4065 6 3.28557 0.16759 3.33927 2.50815 6 - -
4066 1.38629 1.38629 1.38629 1.38629
4067 0.03613 4.03184 4.03184 1.46634 0.26236 1.09861 0.40547
4068 7 3.47425 0.12541 3.52195 2.85885 7 - -
4069 1.38629 1.38629 1.38629 1.38629
4070 0.03613 4.03184 4.03184 1.46634 0.26236 1.09861 0.40547
4071 8 2.97230 3.62390 0.11328 3.53235 8 - -
4072 1.38629 1.38629 1.38629 1.38629
4073 0.03613 4.03184 4.03184 1.46634 0.26236 1.09861 0.40547
4074 9 2.97230 3.62390 0.11328 3.53235 9 - -
4075 1.38629 1.38629 1.38629 1.38629
4076 0.03613 4.03184 4.03184 1.46634 0.26236 1.09861 0.40547
4077 10 2.97230 3.62390 0.11328 3.53235 10 - -
4078 1.38629 1.38629 1.38629 1.38629
4079 0.03613 4.03184 4.03184 1.46634 0.26236 1.09861 0.40547
4080 11 3.12484 2.61816 3.17160 0.17295 11 - -
4081 1.38629 1.38629 1.38629 1.38629
4082 0.03613 4.03184 4.03184 1.46634 0.26236 1.09861 0.40547
4083 12 3.12484 2.61816 3.17160 0.17295 12 - -
4084 1.38629 1.38629 1.38629 1.38629
4085 0.03613 4.03184 4.03184 1.46634 0.26236 1.09861 0.40547
4086 13 0.13726 3.41601 2.82509 3.32108 13 - -
4087 1.38629 1.38629 1.38629 1.38629
4088 0.03613 4.03184 4.03184 1.46634 0.26236 1.09861 0.40547
4089 14 3.12484 2.61816 3.17160 0.17295 14 - -
4090 1.38629 1.38629 1.38629 1.38629
4091 0.03613 4.03184 4.03184 1.46634 0.26236 1.09861 0.40547
4092 15 2.98834 0.22123 2.76748 2.46186 15 - -
4093 1.38629 1.38629 1.38629 1.38629
4094 0.03613 4.03184 4.03184 1.46634 0.26236 1.09861 0.40547
4095 16 3.47425 0.12541 3.52195 2.85885 16 - -
4096 1.38629 1.38629 1.38629 1.38629
4097 0.03613 4.03184 4.03184 1.46634 0.26236 1.09861 0.40547
4098 17 3.47425 0.12541 3.52195 2.85885 17 - -
4099 1.38629 1.38629 1.38629 1.38629
4100 0.03613 4.03184 4.03184 1.46634 0.26236 1.09861 0.40547
4101 18 3.12484 2.61816 3.17160 0.17295 18 - -
4102 1.38629 1.38629 1.38629 1.38629
4103 0.03613 4.03184 4.03184 1.46634 0.26236 1.09861 0.40547
4104 19 2.97230 3.62390 0.11328 3.53235 19 - -
4105 1.38629 1.38629 1.38629 1.38629
4106 0.03613 4.03184 4.03184 1.46634 0.26236 1.09861 0.40547
4107 20 2.97230 3.62390 0.11328 3.53235 20 - -
4108 1.38629 1.38629 1.38629 1.38629
4109 0.03613 4.03184 4.03184 1.46634 0.26236 1.09861 0.40547
4110 21 0.33248 2.88183 1.81285 2.75452 21 - -
4111 1.38629 1.38629 1.38629 1.38629
4112 0.03613 4.03184 4.03184 1.46634 0.26236 1.09861 0.40547
4113 22 0.13726 3.41601 2.82509 3.32108 22 - -
4114 1.38629 1.38629 1.38629 1.38629
4115 0.03613 4.03184 4.03184 1.46634 0.26236 1.09861 0.40547
4116 23 2.97230 3.62390 0.11328 3.53235 23 - -
4117 1.38629 1.38629 1.38629 1.38629
4118 0.03613 4.03184 4.03184 1.46634 0.26236 1.09861 0.40547
4119 24 3.12484 2.61816 3.17160 0.17295 24 - -
4120 1.38629 1.38629 1.38629 1.38629
4121 0.03613 4.03184 4.03184 1.46634 0.26236 1.09861 0.40547
4122 25 0.13726 3.41601 2.82509 3.32108 25 - -
4123 1.38629 1.38629 1.38629 1.38629
4124 0.03613 4.03184 4.03184 1.46634 0.26236 1.09861 0.40547
4125 26 3.12484 2.61816 3.17160 0.17295 26 - -
4126 1.38629 1.38629 1.38629 1.38629
4127 0.03613 4.03184 4.03184 1.46634 0.26236 1.09861 0.40547
4128 27 2.97230 3.62390 0.11328 3.53235 27 - -
4129 1.38629 1.38629 1.38629 1.38629
4130 0.03613 4.03184 4.03184 1.46634 0.26236 1.09861 0.40547
4131 28 3.28557 0.16759 3.33927 2.50815 28 - -
4132 1.38629 1.38629 1.38629 1.38629
4133 0.03613 4.03184 4.03184 1.46634 0.26236 1.09861 0.40547
4134 29 3.47425 0.12541 3.52195 2.85885 29 - -
4135 1.38629 1.38629 1.38629 1.38629
4136 0.03613 4.03184 4.03184 1.46634 0.26236 1.09861 0.40547
4137 30 3.12484 2.61816 3.17160 0.17295 30 - -
4138 1.38629 1.38629 1.38629 1.38629
4139 0.03613 4.03184 4.03184 1.46634 0.26236 1.09861 0.40547
4140 31 2.97230 3.62390 0.11328 3.53235 31 - -
4141 1.38629 1.38629 1.38629 1.38629
4142 0.03613 4.03184 4.03184 1.46634 0.26236 1.09861 0.40547
4143 32 3.12484 2.61816 3.17160 0.17295 32 - -
4144 1.38629 1.38629 1.38629 1.38629
4145 0.03613 4.03184 4.03184 1.46634 0.26236 1.09861 0.40547
4146 33 0.13726 3.41601 2.82509 3.32108 33 - -
4147 1.38629 1.38629 1.38629 1.38629
4148 0.03613 4.03184 4.03184 1.46634 0.26236 1.09861 0.40547
4149 34 3.12484 2.61816 3.17160 0.17295 34 - -
4150 1.38629 1.38629 1.38629 1.38629
4151 0.03613 4.03184 4.03184 1.46634 0.26236 1.09861 0.40547
4152 35 3.47425 0.12541 3.52195 2.85885 35 - -
4153 1.38629 1.38629 1.38629 1.38629
4154 0.03613 4.03184 4.03184 1.46634 0.26236 1.09861 0.40547
4155 36 0.13726 3.41601 2.82509 3.32108 36 - -
4156 1.38629 1.38629 1.38629 1.38629
4157 0.03613 4.03184 4.03184 1.46634 0.26236 1.09861 0.40547
4158 37 2.97230 3.62390 0.11328 3.53235 37 - -
4159 1.38629 1.38629 1.38629 1.38629
4160 0.03613 4.03184 4.03184 1.46634 0.26236 1.09861 0.40547
4161 38 3.12484 2.61816 3.17160 0.17295 38 - -
4162 1.38629 1.38629 1.38629 1.38629
4163 0.03613 4.03184 4.03184 1.46634 0.26236 1.09861 0.40547
4164 39 2.97230 3.62390 0.11328 3.53235 39 - -
4165 1.38629 1.38629 1.38629 1.38629
4166 0.03613 4.03184 4.03184 1.46634 0.26236 1.09861 0.40547
4167 40 3.12484 2.61816 3.17160 0.17295 40 - -
4168 1.38629 1.38629 1.38629 1.38629
4169 0.03613 4.03184 4.03184 1.46634 0.26236 1.09861 0.40547
4170 41 3.47425 0.12541 3.52195 2.85885 41 - -
4171 1.38629 1.38629 1.38629 1.38629
4172 0.03613 4.03184 4.03184 1.46634 0.26236 1.09861 0.40547
4173 42 3.47425 0.12541 3.52195 2.85885 42 - -
4174 1.38629 1.38629 1.38629 1.38629
4175 0.03613 4.03184 4.03184 1.46634 0.26236 1.09861 0.40547
4176 43 2.97230 3.62390 0.11328 3.53235 43 - -
4177 1.38629 1.38629 1.38629 1.38629
4178 0.03613 4.03184 4.03184 1.46634 0.26236 1.09861 0.40547
4179 44 3.12484 2.61816 3.17160 0.17295 44 - -
4180 1.38629 1.38629 1.38629 1.38629
4181 0.03613 4.03184 4.03184 1.46634 0.26236 1.09861 0.40547
4182 45 0.13726 3.41601 2.82509 3.32108 45 - -
4183 1.38629 1.38629 1.38629 1.38629
4184 0.01823 4.01394 * 1.46634 0.26236 0.00000 *
4185 //
4186 HMMER3/b [3.0 | March 2010]
4187 NAME 3_End_Oomycota_58S_end_ten_long
4188 LENG 45
4189 ALPH DNA
4190 RF no
4191 CS no
4192 MAP yes
4193 DATE Mon Jan 23 23:03:33 2012
4194 NSEQ 54
4195 EFFN 3.470581
4196 CKSUM 1760084942
4197 STATS LOCAL MSV -7.4293 0.71931
4198 STATS LOCAL VITERBI -7.7359 0.71931
4199 STATS LOCAL FORWARD -3.9826 0.71931
4200 HMM A C G T
4201 m->m m->i m->d i->m i->i d->m d->d
4202 COMPO 1.71129 1.36466 1.27266 1.25944
4203 1.38629 1.38629 1.38629 1.38629
4204 0.03591 4.03788 4.03788 1.46634 0.26236 0.00000 *
4205 1 3.48627 0.12404 3.53344 2.86754 1 - -
4206 1.38629 1.38629 1.38629 1.38629
4207 0.03591 4.03788 4.03788 1.46634 0.26236 1.09861 0.40547
4208 2 0.13594 3.42647 2.83185 3.33254 2 - -
4209 1.38629 1.38629 1.38629 1.38629
4210 0.03591 4.03788 4.03788 1.46634 0.26236 1.09861 0.40547
4211 3 3.48627 0.12404 3.53344 2.86754 3 - -
4212 1.38629 1.38629 1.38629 1.38629
4213 0.03591 4.03788 4.03788 1.46634 0.26236 1.09861 0.40547
4214 4 3.13549 2.62492 3.18184 0.17130 4 - -
4215 1.38629 1.38629 1.38629 1.38629
4216 0.03591 4.03788 4.03788 1.46634 0.26236 1.09861 0.40547
4217 5 2.60551 1.51324 2.67124 0.45134 5 - -
4218 1.38629 1.38629 1.38629 1.38629
4219 0.03591 4.03788 4.03788 1.46634 0.26236 1.09861 0.40547
4220 6 3.48627 0.12404 3.53344 2.86754 6 - -
4221 1.38629 1.38629 1.38629 1.38629
4222 0.03591 4.03788 4.03788 1.46634 0.26236 1.09861 0.40547
4223 7 3.48627 0.12404 3.53344 2.86754 7 - -
4224 1.38629 1.38629 1.38629 1.38629
4225 0.03591 4.03788 4.03788 1.46634 0.26236 1.09861 0.40547
4226 8 2.97949 3.63442 0.11218 3.54399 8 - -
4227 1.38629 1.38629 1.38629 1.38629
4228 0.03591 4.03788 4.03788 1.46634 0.26236 1.09861 0.40547
4229 9 2.97949 3.63442 0.11218 3.54399 9 - -
4230 1.38629 1.38629 1.38629 1.38629
4231 0.03591 4.03788 4.03788 1.46634 0.26236 1.09861 0.40547
4232 10 2.97949 3.63442 0.11218 3.54399 10 - -
4233 1.38629 1.38629 1.38629 1.38629
4234 0.03591 4.03788 4.03788 1.46634 0.26236 1.09861 0.40547
4235 11 3.13549 2.62492 3.18184 0.17130 11 - -
4236 1.38629 1.38629 1.38629 1.38629
4237 0.03591 4.03788 4.03788 1.46634 0.26236 1.09861 0.40547
4238 12 3.13549 2.62492 3.18184 0.17130 12 - -
4239 1.38629 1.38629 1.38629 1.38629
4240 0.03591 4.03788 4.03788 1.46634 0.26236 1.09861 0.40547
4241 13 0.13594 3.42647 2.83185 3.33254 13 - -
4242 1.38629 1.38629 1.38629 1.38629
4243 0.03591 4.03788 4.03788 1.46634 0.26236 1.09861 0.40547
4244 14 2.97949 3.63442 0.11218 3.54399 14 - -
4245 1.38629 1.38629 1.38629 1.38629
4246 0.03591 4.03788 4.03788 1.46634 0.26236 1.09861 0.40547
4247 15 3.13549 2.62492 3.18184 0.17130 15 - -
4248 1.38629 1.38629 1.38629 1.38629
4249 0.03591 4.03788 4.03788 1.46634 0.26236 1.09861 0.40547
4250 16 3.48627 0.12404 3.53344 2.86754 16 - -
4251 1.38629 1.38629 1.38629 1.38629
4252 0.03591 4.03788 4.03788 1.46634 0.26236 1.09861 0.40547
4253 17 3.48627 0.12404 3.53344 2.86754 17 - -
4254 1.38629 1.38629 1.38629 1.38629
4255 0.03591 4.03788 4.03788 1.46634 0.26236 1.09861 0.40547
4256 18 3.13549 2.62492 3.18184 0.17130 18 - -
4257 1.38629 1.38629 1.38629 1.38629
4258 0.03591 4.03788 4.03788 1.46634 0.26236 1.09861 0.40547
4259 19 2.97949 3.63442 0.11218 3.54399 19 - -
4260 1.38629 1.38629 1.38629 1.38629
4261 0.03591 4.03788 4.03788 1.46634 0.26236 1.09861 0.40547
4262 20 2.97949 3.63442 0.11218 3.54399 20 - -
4263 1.38629 1.38629 1.38629 1.38629
4264 0.03591 4.03788 4.03788 1.46634 0.26236 1.09861 0.40547
4265 21 2.10332 3.14365 0.24059 3.02289 21 - -
4266 1.38629 1.38629 1.38629 1.38629
4267 0.03591 4.03788 4.03788 1.46634 0.26236 1.09861 0.40547
4268 22 0.13594 3.42647 2.83185 3.33254 22 - -
4269 1.38629 1.38629 1.38629 1.38629
4270 0.03591 4.03788 4.03788 1.46634 0.26236 1.09861 0.40547
4271 23 2.27347 3.25435 0.20437 3.14004 23 - -
4272 1.38629 1.38629 1.38629 1.38629
4273 0.03591 4.03788 4.03788 1.46634 0.26236 1.09861 0.40547
4274 24 3.13549 2.62492 3.18184 0.17130 24 - -
4275 1.38629 1.38629 1.38629 1.38629
4276 0.03591 4.03788 4.03788 1.46634 0.26236 1.09861 0.40547
4277 25 0.13594 3.42647 2.83185 3.33254 25 - -
4278 1.38629 1.38629 1.38629 1.38629
4279 0.03591 4.03788 4.03788 1.46634 0.26236 1.09861 0.40547
4280 26 3.13549 2.62492 3.18184 0.17130 26 - -
4281 1.38629 1.38629 1.38629 1.38629
4282 0.03591 4.03788 4.03788 1.46634 0.26236 1.09861 0.40547
4283 27 2.97949 3.63442 0.11218 3.54399 27 - -
4284 1.38629 1.38629 1.38629 1.38629
4285 0.03591 4.03788 4.03788 1.46634 0.26236 1.09861 0.40547
4286 28 3.48627 0.12404 3.53344 2.86754 28 - -
4287 1.38629 1.38629 1.38629 1.38629
4288 0.03591 4.03788 4.03788 1.46634 0.26236 1.09861 0.40547
4289 29 3.48627 0.12404 3.53344 2.86754 29 - -
4290 1.38629 1.38629 1.38629 1.38629
4291 0.03591 4.03788 4.03788 1.46634 0.26236 1.09861 0.40547
4292 30 3.13549 2.62492 3.18184 0.17130 30 - -
4293 1.38629 1.38629 1.38629 1.38629
4294 0.03591 4.03788 4.03788 1.46634 0.26236 1.09861 0.40547
4295 31 2.97949 3.63442 0.11218 3.54399 31 - -
4296 1.38629 1.38629 1.38629 1.38629
4297 0.03591 4.03788 4.03788 1.46634 0.26236 1.09861 0.40547
4298 32 3.13549 2.62492 3.18184 0.17130 32 - -
4299 1.38629 1.38629 1.38629 1.38629
4300 0.03591 4.03788 4.03788 1.46634 0.26236 1.09861 0.40547
4301 33 0.13594 3.42647 2.83185 3.33254 33 - -
4302 1.38629 1.38629 1.38629 1.38629
4303 0.03591 4.03788 4.03788 1.46634 0.26236 1.09861 0.40547
4304 34 3.13549 2.62492 3.18184 0.17130 34 - -
4305 1.38629 1.38629 1.38629 1.38629
4306 0.03591 4.03788 4.03788 1.46634 0.26236 1.09861 0.40547
4307 35 3.48627 0.12404 3.53344 2.86754 35 - -
4308 1.38629 1.38629 1.38629 1.38629
4309 0.03591 4.03788 4.03788 1.46634 0.26236 1.09861 0.40547
4310 36 0.13594 3.42647 2.83185 3.33254 36 - -
4311 1.38629 1.38629 1.38629 1.38629
4312 0.03591 4.03788 4.03788 1.46634 0.26236 1.09861 0.40547
4313 37 2.81765 3.31135 0.16502 2.88403 37 - -
4314 1.38629 1.38629 1.38629 1.38629
4315 0.03591 4.03788 4.03788 1.46634 0.26236 1.09861 0.40547
4316 38 3.13549 2.62492 3.18184 0.17130 38 - -
4317 1.38629 1.38629 1.38629 1.38629
4318 0.03591 4.03788 4.03788 1.46634 0.26236 1.09861 0.40547
4319 39 2.97949 3.63442 0.11218 3.54399 39 - -
4320 1.38629 1.38629 1.38629 1.38629
4321 0.03591 4.03788 4.03788 1.46634 0.26236 1.09861 0.40547
4322 40 3.13549 2.62492 3.18184 0.17130 40 - -
4323 1.38629 1.38629 1.38629 1.38629
4324 0.03591 4.03788 4.03788 1.46634 0.26236 1.09861 0.40547
4325 41 3.48627 0.12404 3.53344 2.86754 41 - -
4326 1.38629 1.38629 1.38629 1.38629
4327 0.03591 4.03788 4.03788 1.46634 0.26236 1.09861 0.40547
4328 42 3.48627 0.12404 3.53344 2.86754 42 - -
4329 1.38629 1.38629 1.38629 1.38629
4330 0.03591 4.03788 4.03788 1.46634 0.26236 1.09861 0.40547
4331 43 2.97949 3.63442 0.11218 3.54399 43 - -
4332 1.38629 1.38629 1.38629 1.38629
4333 0.03591 4.03788 4.03788 1.46634 0.26236 1.09861 0.40547
4334 44 3.13549 2.62492 3.18184 0.17130 44 - -
4335 1.38629 1.38629 1.38629 1.38629
4336 0.03591 4.03788 4.03788 1.46634 0.26236 1.09861 0.40547
4337 45 0.13594 3.42647 2.83185 3.33254 45 - -
4338 1.38629 1.38629 1.38629 1.38629
4339 0.01811 4.02008 * 1.46634 0.26236 0.00000 *
4340 //
4341 HMMER3/b [3.0 | March 2010]
4342 NAME 3_End_Oomycota_58S_end_thirteen_long
4343 LENG 45
4344 ALPH DNA
4345 RF no
4346 CS no
4347 MAP yes
4348 DATE Mon Jan 23 23:04:10 2012
4349 NSEQ 81
4350 EFFN 3.267883
4351 CKSUM 2455870292
4352 STATS LOCAL MSV -8.1309 0.71934
4353 STATS LOCAL VITERBI -7.7106 0.71934
4354 STATS LOCAL FORWARD -4.0603 0.71934
4355 HMM A C G T
4356 m->m m->i m->d i->m i->i d->m d->d
4357 COMPO 1.72312 1.37867 1.25801 1.25400
4358 1.38629 1.38629 1.38629 1.38629
4359 0.03726 4.00148 4.00148 1.46634 0.26236 0.00000 *
4360 1 3.41270 0.13267 3.46301 2.81411 1 - -
4361 1.38629 1.38629 1.38629 1.38629
4362 0.03726 4.00148 4.00148 1.46634 0.26236 1.09861 0.40547
4363 2 0.14426 3.36256 2.79041 3.26255 2 - -
4364 1.38629 1.38629 1.38629 1.38629
4365 0.03726 4.00148 4.00148 1.46634 0.26236 1.09861 0.40547
4366 3 3.41270 0.13267 3.46301 2.81411 3 - -
4367 1.38629 1.38629 1.38629 1.38629
4368 0.03726 4.00148 4.00148 1.46634 0.26236 1.09861 0.40547
4369 4 3.07077 2.58379 3.11961 0.18158 4 - -
4370 1.38629 1.38629 1.38629 1.38629
4371 0.03726 4.00148 4.00148 1.46634 0.26236 1.09861 0.40547
4372 5 3.07077 2.58379 3.11961 0.18158 5 - -
4373 1.38629 1.38629 1.38629 1.38629
4374 0.03726 4.00148 4.00148 1.46634 0.26236 1.09861 0.40547
4375 6 3.41270 0.13267 3.46301 2.81411 6 - -
4376 1.38629 1.38629 1.38629 1.38629
4377 0.03726 4.00148 4.00148 1.46634 0.26236 1.09861 0.40547
4378 7 3.41270 0.13267 3.46301 2.81411 7 - -
4379 1.38629 1.38629 1.38629 1.38629
4380 0.03726 4.00148 4.00148 1.46634 0.26236 1.09861 0.40547
4381 8 2.93514 3.56976 0.11915 3.47257 8 - -
4382 1.38629 1.38629 1.38629 1.38629
4383 0.03726 4.00148 4.00148 1.46634 0.26236 1.09861 0.40547
4384 9 2.93514 3.56976 0.11915 3.47257 9 - -
4385 1.38629 1.38629 1.38629 1.38629
4386 0.03726 4.00148 4.00148 1.46634 0.26236 1.09861 0.40547
4387 10 2.93514 3.56976 0.11915 3.47257 10 - -
4388 1.38629 1.38629 1.38629 1.38629
4389 0.03726 4.00148 4.00148 1.46634 0.26236 1.09861 0.40547
4390 11 3.07077 2.58379 3.11961 0.18158 11 - -
4391 1.38629 1.38629 1.38629 1.38629
4392 0.03726 4.00148 4.00148 1.46634 0.26236 1.09861 0.40547
4393 12 3.07077 2.58379 3.11961 0.18158 12 - -
4394 1.38629 1.38629 1.38629 1.38629
4395 0.03726 4.00148 4.00148 1.46634 0.26236 1.09861 0.40547
4396 13 0.14426 3.36256 2.79041 3.26255 13 - -
4397 1.38629 1.38629 1.38629 1.38629
4398 0.03726 4.00148 4.00148 1.46634 0.26236 1.09861 0.40547
4399 14 2.98399 2.37647 3.03577 0.21258 14 - -
4400 1.38629 1.38629 1.38629 1.38629
4401 0.03726 4.00148 4.00148 1.46634 0.26236 1.09861 0.40547
4402 15 2.93514 3.56976 0.11915 3.47257 15 - -
4403 1.38629 1.38629 1.38629 1.38629
4404 0.03726 4.00148 4.00148 1.46634 0.26236 1.09861 0.40547
4405 16 3.41270 0.13267 3.46301 2.81411 16 - -
4406 1.38629 1.38629 1.38629 1.38629
4407 0.03726 4.00148 4.00148 1.46634 0.26236 1.09861 0.40547
4408 17 3.41270 0.13267 3.46301 2.81411 17 - -
4409 1.38629 1.38629 1.38629 1.38629
4410 0.03726 4.00148 4.00148 1.46634 0.26236 1.09861 0.40547
4411 18 3.07077 2.58379 3.11961 0.18158 18 - -
4412 1.38629 1.38629 1.38629 1.38629
4413 0.03726 4.00148 4.00148 1.46634 0.26236 1.09861 0.40547
4414 19 2.93514 3.56976 0.11915 3.47257 19 - -
4415 1.38629 1.38629 1.38629 1.38629
4416 0.03726 4.00148 4.00148 1.46634 0.26236 1.09861 0.40547
4417 20 2.93514 3.56976 0.11915 3.47257 20 - -
4418 1.38629 1.38629 1.38629 1.38629
4419 0.03726 4.00148 4.00148 1.46634 0.26236 1.09861 0.40547
4420 21 2.93514 3.56976 0.11915 3.47257 21 - -
4421 1.38629 1.38629 1.38629 1.38629
4422 0.03726 4.00148 4.00148 1.46634 0.26236 1.09861 0.40547
4423 22 0.14426 3.36256 2.79041 3.26255 22 - -
4424 1.38629 1.38629 1.38629 1.38629
4425 0.03726 4.00148 4.00148 1.46634 0.26236 1.09861 0.40547
4426 23 2.93514 3.56976 0.11915 3.47257 23 - -
4427 1.38629 1.38629 1.38629 1.38629
4428 0.03726 4.00148 4.00148 1.46634 0.26236 1.09861 0.40547
4429 24 3.07077 2.58379 3.11961 0.18158 24 - -
4430 1.38629 1.38629 1.38629 1.38629
4431 0.03726 4.00148 4.00148 1.46634 0.26236 1.09861 0.40547
4432 25 0.14426 3.36256 2.79041 3.26255 25 - -
4433 1.38629 1.38629 1.38629 1.38629
4434 0.03726 4.00148 4.00148 1.46634 0.26236 1.09861 0.40547
4435 26 3.07077 2.58379 3.11961 0.18158 26 - -
4436 1.38629 1.38629 1.38629 1.38629
4437 0.03726 4.00148 4.00148 1.46634 0.26236 1.09861 0.40547
4438 27 2.93514 3.56976 0.11915 3.47257 27 - -
4439 1.38629 1.38629 1.38629 1.38629
4440 0.03726 4.00148 4.00148 1.46634 0.26236 1.09861 0.40547
4441 28 3.41270 0.13267 3.46301 2.81411 28 - -
4442 1.38629 1.38629 1.38629 1.38629
4443 0.03726 4.00148 4.00148 1.46634 0.26236 1.09861 0.40547
4444 29 3.41270 0.13267 3.46301 2.81411 29 - -
4445 1.38629 1.38629 1.38629 1.38629
4446 0.03726 4.00148 4.00148 1.46634 0.26236 1.09861 0.40547
4447 30 3.07077 2.58379 3.11961 0.18158 30 - -
4448 1.38629 1.38629 1.38629 1.38629
4449 0.03726 4.00148 4.00148 1.46634 0.26236 1.09861 0.40547
4450 31 2.93514 3.56976 0.11915 3.47257 31 - -
4451 1.38629 1.38629 1.38629 1.38629
4452 0.03726 4.00148 4.00148 1.46634 0.26236 1.09861 0.40547
4453 32 3.07077 2.58379 3.11961 0.18158 32 - -
4454 1.38629 1.38629 1.38629 1.38629
4455 0.03726 4.00148 4.00148 1.46634 0.26236 1.09861 0.40547
4456 33 0.14426 3.36256 2.79041 3.26255 33 - -
4457 1.38629 1.38629 1.38629 1.38629
4458 0.03726 4.00148 4.00148 1.46634 0.26236 1.09861 0.40547
4459 34 3.07077 2.58379 3.11961 0.18158 34 - -
4460 1.38629 1.38629 1.38629 1.38629
4461 0.03726 4.00148 4.00148 1.46634 0.26236 1.09861 0.40547
4462 35 3.41270 0.13267 3.46301 2.81411 35 - -
4463 1.38629 1.38629 1.38629 1.38629
4464 0.03726 4.00148 4.00148 1.46634 0.26236 1.09861 0.40547
4465 36 0.14426 3.36256 2.79041 3.26255 36 - -
4466 1.38629 1.38629 1.38629 1.38629
4467 0.03726 4.00148 4.00148 1.46634 0.26236 1.09861 0.40547
4468 37 2.93514 3.56976 0.11915 3.47257 37 - -
4469 1.38629 1.38629 1.38629 1.38629
4470 0.03726 4.00148 4.00148 1.46634 0.26236 1.09861 0.40547
4471 38 3.07077 2.58379 3.11961 0.18158 38 - -
4472 1.38629 1.38629 1.38629 1.38629
4473 0.03726 4.00148 4.00148 1.46634 0.26236 1.09861 0.40547
4474 39 2.93514 3.56976 0.11915 3.47257 39 - -
4475 1.38629 1.38629 1.38629 1.38629
4476 0.03726 4.00148 4.00148 1.46634 0.26236 1.09861 0.40547
4477 40 3.07077 2.58379 3.11961 0.18158 40 - -
4478 1.38629 1.38629 1.38629 1.38629
4479 0.03726 4.00148 4.00148 1.46634 0.26236 1.09861 0.40547
4480 41 3.41270 0.13267 3.46301 2.81411 41 - -
4481 1.38629 1.38629 1.38629 1.38629
4482 0.03726 4.00148 4.00148 1.46634 0.26236 1.09861 0.40547
4483 42 3.41270 0.13267 3.46301 2.81411 42 - -
4484 1.38629 1.38629 1.38629 1.38629
4485 0.03726 4.00148 4.00148 1.46634 0.26236 1.09861 0.40547
4486 43 2.93514 3.56976 0.11915 3.47257 43 - -
4487 1.38629 1.38629 1.38629 1.38629
4488 0.03726 4.00148 4.00148 1.46634 0.26236 1.09861 0.40547
4489 44 3.07077 2.58379 3.11961 0.18158 44 - -
4490 1.38629 1.38629 1.38629 1.38629
4491 0.03726 4.00148 4.00148 1.46634 0.26236 1.09861 0.40547
4492 45 0.14426 3.36256 2.79041 3.26255 45 - -
4493 1.38629 1.38629 1.38629 1.38629
4494 0.01881 3.98302 * 1.46634 0.26236 0.00000 *
4495 //
4496 HMMER3/b [3.0 | March 2010]
4497 NAME 3_End_Oomycota_58S_end_thirty_long
4498 LENG 45
4499 ALPH DNA
4500 RF no
4501 CS no
4502 MAP yes
4503 DATE Mon Jan 23 23:08:07 2012
4504 NSEQ 15
4505 EFFN 3.299561
4506 CKSUM 1307625746
4507 STATS LOCAL MSV -8.0463 0.71932
4508 STATS LOCAL VITERBI -7.8277 0.71932
4509 STATS LOCAL FORWARD -4.0097 0.71932
4510 HMM A C G T
4511 m->m m->i m->d i->m i->i d->m d->d
4512 COMPO 1.75107 1.25569 1.24967 1.36676
4513 1.38629 1.38629 1.38629 1.38629
4514 0.03704 4.00725 4.00725 1.46634 0.26236 0.00000 *
4515 1 0.14288 3.37283 2.79710 3.27379 1 - -
4516 1.38629 1.38629 1.38629 1.38629
4517 0.03704 4.00725 4.00725 1.46634 0.26236 1.09861 0.40547
4518 2 3.42454 0.13123 3.47436 2.82276 2 - -
4519 1.38629 1.38629 1.38629 1.38629
4520 0.03704 4.00725 4.00725 1.46634 0.26236 1.09861 0.40547
4521 3 3.08112 2.59037 3.12956 0.17989 3 - -
4522 1.38629 1.38629 1.38629 1.38629
4523 0.03704 4.00725 4.00725 1.46634 0.26236 1.09861 0.40547
4524 4 3.42454 0.13123 3.47436 2.82276 4 - -
4525 1.38629 1.38629 1.38629 1.38629
4526 0.03704 4.00725 4.00725 1.46634 0.26236 1.09861 0.40547
4527 5 3.42454 0.13123 3.47436 2.82276 5 - -
4528 1.38629 1.38629 1.38629 1.38629
4529 0.03704 4.00725 4.00725 1.46634 0.26236 1.09861 0.40547
4530 6 3.42454 0.13123 3.47436 2.82276 6 - -
4531 1.38629 1.38629 1.38629 1.38629
4532 0.03704 4.00725 4.00725 1.46634 0.26236 1.09861 0.40547
4533 7 2.94234 3.58021 0.11799 3.48410 7 - -
4534 1.38629 1.38629 1.38629 1.38629
4535 0.03704 4.00725 4.00725 1.46634 0.26236 1.09861 0.40547
4536 8 2.94234 3.58021 0.11799 3.48410 8 - -
4537 1.38629 1.38629 1.38629 1.38629
4538 0.03704 4.00725 4.00725 1.46634 0.26236 1.09861 0.40547
4539 9 2.94234 3.58021 0.11799 3.48410 9 - -
4540 1.38629 1.38629 1.38629 1.38629
4541 0.03704 4.00725 4.00725 1.46634 0.26236 1.09861 0.40547
4542 10 3.08112 2.59037 3.12956 0.17989 10 - -
4543 1.38629 1.38629 1.38629 1.38629
4544 0.03704 4.00725 4.00725 1.46634 0.26236 1.09861 0.40547
4545 11 3.08112 2.59037 3.12956 0.17989 11 - -
4546 1.38629 1.38629 1.38629 1.38629
4547 0.03704 4.00725 4.00725 1.46634 0.26236 1.09861 0.40547
4548 12 3.42454 0.13123 3.47436 2.82276 12 - -
4549 1.38629 1.38629 1.38629 1.38629
4550 0.03704 4.00725 4.00725 1.46634 0.26236 1.09861 0.40547
4551 13 0.42062 2.72717 1.59408 2.59210 13 - -
4552 1.38629 1.38629 1.38629 1.38629
4553 0.03704 4.00725 4.00725 1.46634 0.26236 1.09861 0.40547
4554 14 2.94234 3.58021 0.11799 3.48410 14 - -
4555 1.38629 1.38629 1.38629 1.38629
4556 0.03704 4.00725 4.00725 1.46634 0.26236 1.09861 0.40547
4557 15 3.42454 0.13123 3.47436 2.82276 15 - -
4558 1.38629 1.38629 1.38629 1.38629
4559 0.03704 4.00725 4.00725 1.46634 0.26236 1.09861 0.40547
4560 16 3.42454 0.13123 3.47436 2.82276 16 - -
4561 1.38629 1.38629 1.38629 1.38629
4562 0.03704 4.00725 4.00725 1.46634 0.26236 1.09861 0.40547
4563 17 3.08112 2.59037 3.12956 0.17989 17 - -
4564 1.38629 1.38629 1.38629 1.38629
4565 0.03704 4.00725 4.00725 1.46634 0.26236 1.09861 0.40547
4566 18 3.42454 0.13123 3.47436 2.82276 18 - -
4567 1.38629 1.38629 1.38629 1.38629
4568 0.03704 4.00725 4.00725 1.46634 0.26236 1.09861 0.40547
4569 19 2.94234 3.58021 0.11799 3.48410 19 - -
4570 1.38629 1.38629 1.38629 1.38629
4571 0.03704 4.00725 4.00725 1.46634 0.26236 1.09861 0.40547
4572 20 2.94234 3.58021 0.11799 3.48410 20 - -
4573 1.38629 1.38629 1.38629 1.38629
4574 0.03704 4.00725 4.00725 1.46634 0.26236 1.09861 0.40547
4575 21 2.94234 3.58021 0.11799 3.48410 21 - -
4576 1.38629 1.38629 1.38629 1.38629
4577 0.03704 4.00725 4.00725 1.46634 0.26236 1.09861 0.40547
4578 22 0.14288 3.37283 2.79710 3.27379 22 - -
4579 1.38629 1.38629 1.38629 1.38629
4580 0.03704 4.00725 4.00725 1.46634 0.26236 1.09861 0.40547
4581 23 2.94234 3.58021 0.11799 3.48410 23 - -
4582 1.38629 1.38629 1.38629 1.38629
4583 0.03704 4.00725 4.00725 1.46634 0.26236 1.09861 0.40547
4584 24 3.08112 2.59037 3.12956 0.17989 24 - -
4585 1.38629 1.38629 1.38629 1.38629
4586 0.03704 4.00725 4.00725 1.46634 0.26236 1.09861 0.40547
4587 25 0.14288 3.37283 2.79710 3.27379 25 - -
4588 1.38629 1.38629 1.38629 1.38629
4589 0.03704 4.00725 4.00725 1.46634 0.26236 1.09861 0.40547
4590 26 3.08112 2.59037 3.12956 0.17989 26 - -
4591 1.38629 1.38629 1.38629 1.38629
4592 0.03704 4.00725 4.00725 1.46634 0.26236 1.09861 0.40547
4593 27 2.94234 3.58021 0.11799 3.48410 27 - -
4594 1.38629 1.38629 1.38629 1.38629
4595 0.03704 4.00725 4.00725 1.46634 0.26236 1.09861 0.40547
4596 28 3.42454 0.13123 3.47436 2.82276 28 - -
4597 1.38629 1.38629 1.38629 1.38629
4598 0.03704 4.00725 4.00725 1.46634 0.26236 1.09861 0.40547
4599 29 3.42454 0.13123 3.47436 2.82276 29 - -
4600 1.38629 1.38629 1.38629 1.38629
4601 0.03704 4.00725 4.00725 1.46634 0.26236 1.09861 0.40547
4602 30 3.08112 2.59037 3.12956 0.17989 30 - -
4603 1.38629 1.38629 1.38629 1.38629
4604 0.03704 4.00725 4.00725 1.46634 0.26236 1.09861 0.40547
4605 31 2.94234 3.58021 0.11799 3.48410 31 - -
4606 1.38629 1.38629 1.38629 1.38629
4607 0.03704 4.00725 4.00725 1.46634 0.26236 1.09861 0.40547
4608 32 3.08112 2.59037 3.12956 0.17989 32 - -
4609 1.38629 1.38629 1.38629 1.38629
4610 0.03704 4.00725 4.00725 1.46634 0.26236 1.09861 0.40547
4611 33 0.14288 3.37283 2.79710 3.27379 33 - -
4612 1.38629 1.38629 1.38629 1.38629
4613 0.03704 4.00725 4.00725 1.46634 0.26236 1.09861 0.40547
4614 34 3.08112 2.59037 3.12956 0.17989 34 - -
4615 1.38629 1.38629 1.38629 1.38629
4616 0.03704 4.00725 4.00725 1.46634 0.26236 1.09861 0.40547
4617 35 3.42454 0.13123 3.47436 2.82276 35 - -
4618 1.38629 1.38629 1.38629 1.38629
4619 0.03704 4.00725 4.00725 1.46634 0.26236 1.09861 0.40547
4620 36 0.14288 3.37283 2.79710 3.27379 36 - -
4621 1.38629 1.38629 1.38629 1.38629
4622 0.03704 4.00725 4.00725 1.46634 0.26236 1.09861 0.40547
4623 37 2.94234 3.58021 0.11799 3.48410 37 - -
4624 1.38629 1.38629 1.38629 1.38629
4625 0.03704 4.00725 4.00725 1.46634 0.26236 1.09861 0.40547
4626 38 3.08112 2.59037 3.12956 0.17989 38 - -
4627 1.38629 1.38629 1.38629 1.38629
4628 0.03704 4.00725 4.00725 1.46634 0.26236 1.09861 0.40547
4629 39 2.94234 3.58021 0.11799 3.48410 39 - -
4630 1.38629 1.38629 1.38629 1.38629
4631 0.03704 4.00725 4.00725 1.46634 0.26236 1.09861 0.40547
4632 40 3.08112 2.59037 3.12956 0.17989 40 - -
4633 1.38629 1.38629 1.38629 1.38629
4634 0.03704 4.00725 4.00725 1.46634 0.26236 1.09861 0.40547
4635 41 3.42454 0.13123 3.47436 2.82276 41 - -
4636 1.38629 1.38629 1.38629 1.38629
4637 0.03704 4.00725 4.00725 1.46634 0.26236 1.09861 0.40547
4638 42 3.42454 0.13123 3.47436 2.82276 42 - -
4639 1.38629 1.38629 1.38629 1.38629
4640 0.03704 4.00725 4.00725 1.46634 0.26236 1.09861 0.40547
4641 43 2.94234 3.58021 0.11799 3.48410 43 - -
4642 1.38629 1.38629 1.38629 1.38629
4643 0.03704 4.00725 4.00725 1.46634 0.26236 1.09861 0.40547
4644 44 3.08112 2.59037 3.12956 0.17989 44 - -
4645 1.38629 1.38629 1.38629 1.38629
4646 0.03704 4.00725 4.00725 1.46634 0.26236 1.09861 0.40547
4647 45 0.14288 3.37283 2.79710 3.27379 45 - -
4648 1.38629 1.38629 1.38629 1.38629
4649 0.01869 3.98890 * 1.46634 0.26236 0.00000 *
4650 //
4651 HMMER3/b [3.0 | March 2010]
4652 NAME 3_End_Oomycota_58S_end_thirtyeight_long
4653 LENG 45
4654 ALPH DNA
4655 RF no
4656 CS no
4657 MAP yes
4658 DATE Mon Jan 23 23:09:27 2012
4659 NSEQ 32
4660 EFFN 3.347656
4661 CKSUM 3610209238
4662 STATS LOCAL MSV -8.0410 0.71931
4663 STATS LOCAL VITERBI -7.5823 0.71931
4664 STATS LOCAL FORWARD -4.2622 0.71931
4665 HMM A C G T
4666 m->m m->i m->d i->m i->i d->m d->d
4667 COMPO 1.82826 1.23825 1.32178 1.26317
4668 1.38629 1.38629 1.38629 1.38629
4669 0.03672 4.01596 4.01596 1.46634 0.26236 0.00000 *
4670 1 3.44228 0.12912 3.49135 2.83567 1 - -
4671 1.38629 1.38629 1.38629 1.38629
4672 0.03672 4.01596 4.01596 1.46634 0.26236 1.09861 0.40547
4673 2 3.09665 2.60026 3.14450 0.17739 2 - -
4674 1.38629 1.38629 1.38629 1.38629
4675 0.03672 4.01596 4.01596 1.46634 0.26236 1.09861 0.40547
4676 3 3.09665 2.60026 3.14450 0.17739 3 - -
4677 1.38629 1.38629 1.38629 1.38629
4678 0.03672 4.01596 4.01596 1.46634 0.26236 1.09861 0.40547
4679 4 3.44228 0.12912 3.49135 2.83567 4 - -
4680 1.38629 1.38629 1.38629 1.38629
4681 0.03672 4.01596 4.01596 1.46634 0.26236 1.09861 0.40547
4682 5 3.44228 0.12912 3.49135 2.83567 5 - -
4683 1.38629 1.38629 1.38629 1.38629
4684 0.03672 4.01596 4.01596 1.46634 0.26236 1.09861 0.40547
4685 6 2.95307 3.59583 0.11628 3.50134 6 - -
4686 1.38629 1.38629 1.38629 1.38629
4687 0.03672 4.01596 4.01596 1.46634 0.26236 1.09861 0.40547
4688 7 2.95307 3.59583 0.11628 3.50134 7 - -
4689 1.38629 1.38629 1.38629 1.38629
4690 0.03672 4.01596 4.01596 1.46634 0.26236 1.09861 0.40547
4691 8 2.95307 3.59583 0.11628 3.50134 8 - -
4692 1.38629 1.38629 1.38629 1.38629
4693 0.03672 4.01596 4.01596 1.46634 0.26236 1.09861 0.40547
4694 9 3.44228 0.12912 3.49135 2.83567 9 - -
4695 1.38629 1.38629 1.38629 1.38629
4696 0.03672 4.01596 4.01596 1.46634 0.26236 1.09861 0.40547
4697 10 3.09665 2.60026 3.14450 0.17739 10 - -
4698 1.38629 1.38629 1.38629 1.38629
4699 0.03672 4.01596 4.01596 1.46634 0.26236 1.09861 0.40547
4700 11 3.44228 0.12912 3.49135 2.83567 11 - -
4701 1.38629 1.38629 1.38629 1.38629
4702 0.03672 4.01596 4.01596 1.46634 0.26236 1.09861 0.40547
4703 12 3.09665 2.60026 3.14450 0.17739 12 - -
4704 1.38629 1.38629 1.38629 1.38629
4705 0.03672 4.01596 4.01596 1.46634 0.26236 1.09861 0.40547
4706 13 3.44228 0.12912 3.49135 2.83567 13 - -
4707 1.38629 1.38629 1.38629 1.38629
4708 0.03672 4.01596 4.01596 1.46634 0.26236 1.09861 0.40547
4709 14 3.09665 2.60026 3.14450 0.17739 14 - -
4710 1.38629 1.38629 1.38629 1.38629
4711 0.03672 4.01596 4.01596 1.46634 0.26236 1.09861 0.40547
4712 15 0.14085 3.38823 2.80709 3.29064 15 - -
4713 1.38629 1.38629 1.38629 1.38629
4714 0.03672 4.01596 4.01596 1.46634 0.26236 1.09861 0.40547
4715 16 3.44228 0.12912 3.49135 2.83567 16 - -
4716 1.38629 1.38629 1.38629 1.38629
4717 0.03672 4.01596 4.01596 1.46634 0.26236 1.09861 0.40547
4718 17 2.52787 1.40265 2.59570 0.51144 17 - -
4719 1.38629 1.38629 1.38629 1.38629
4720 0.03672 4.01596 4.01596 1.46634 0.26236 1.09861 0.40547
4721 18 3.44228 0.12912 3.49135 2.83567 18 - -
4722 1.38629 1.38629 1.38629 1.38629
4723 0.03672 4.01596 4.01596 1.46634 0.26236 1.09861 0.40547
4724 19 2.95307 3.59583 0.11628 3.50134 19 - -
4725 1.38629 1.38629 1.38629 1.38629
4726 0.03672 4.01596 4.01596 1.46634 0.26236 1.09861 0.40547
4727 20 2.95307 3.59583 0.11628 3.50134 20 - -
4728 1.38629 1.38629 1.38629 1.38629
4729 0.03672 4.01596 4.01596 1.46634 0.26236 1.09861 0.40547
4730 21 2.95307 3.59583 0.11628 3.50134 21 - -
4731 1.38629 1.38629 1.38629 1.38629
4732 0.03672 4.01596 4.01596 1.46634 0.26236 1.09861 0.40547
4733 22 0.14085 3.38823 2.80709 3.29064 22 - -
4734 1.38629 1.38629 1.38629 1.38629
4735 0.03672 4.01596 4.01596 1.46634 0.26236 1.09861 0.40547
4736 23 2.95307 3.59583 0.11628 3.50134 23 - -
4737 1.38629 1.38629 1.38629 1.38629
4738 0.03672 4.01596 4.01596 1.46634 0.26236 1.09861 0.40547
4739 24 3.09665 2.60026 3.14450 0.17739 24 - -
4740 1.38629 1.38629 1.38629 1.38629
4741 0.03672 4.01596 4.01596 1.46634 0.26236 1.09861 0.40547
4742 25 0.14085 3.38823 2.80709 3.29064 25 - -
4743 1.38629 1.38629 1.38629 1.38629
4744 0.03672 4.01596 4.01596 1.46634 0.26236 1.09861 0.40547
4745 26 3.09665 2.60026 3.14450 0.17739 26 - -
4746 1.38629 1.38629 1.38629 1.38629
4747 0.03672 4.01596 4.01596 1.46634 0.26236 1.09861 0.40547
4748 27 2.95307 3.59583 0.11628 3.50134 27 - -
4749 1.38629 1.38629 1.38629 1.38629
4750 0.03672 4.01596 4.01596 1.46634 0.26236 1.09861 0.40547
4751 28 3.44228 0.12912 3.49135 2.83567 28 - -
4752 1.38629 1.38629 1.38629 1.38629
4753 0.03672 4.01596 4.01596 1.46634 0.26236 1.09861 0.40547
4754 29 3.44228 0.12912 3.49135 2.83567 29 - -
4755 1.38629 1.38629 1.38629 1.38629
4756 0.03672 4.01596 4.01596 1.46634 0.26236 1.09861 0.40547
4757 30 3.09665 2.60026 3.14450 0.17739 30 - -
4758 1.38629 1.38629 1.38629 1.38629
4759 0.03672 4.01596 4.01596 1.46634 0.26236 1.09861 0.40547
4760 31 2.95307 3.59583 0.11628 3.50134 31 - -
4761 1.38629 1.38629 1.38629 1.38629
4762 0.03672 4.01596 4.01596 1.46634 0.26236 1.09861 0.40547
4763 32 3.09665 2.60026 3.14450 0.17739 32 - -
4764 1.38629 1.38629 1.38629 1.38629
4765 0.03672 4.01596 4.01596 1.46634 0.26236 1.09861 0.40547
4766 33 0.14085 3.38823 2.80709 3.29064 33 - -
4767 1.38629 1.38629 1.38629 1.38629
4768 0.03672 4.01596 4.01596 1.46634 0.26236 1.09861 0.40547
4769 34 3.09665 2.60026 3.14450 0.17739 34 - -
4770 1.38629 1.38629 1.38629 1.38629
4771 0.03672 4.01596 4.01596 1.46634 0.26236 1.09861 0.40547
4772 35 3.44228 0.12912 3.49135 2.83567 35 - -
4773 1.38629 1.38629 1.38629 1.38629
4774 0.03672 4.01596 4.01596 1.46634 0.26236 1.09861 0.40547
4775 36 0.14085 3.38823 2.80709 3.29064 36 - -
4776 1.38629 1.38629 1.38629 1.38629
4777 0.03672 4.01596 4.01596 1.46634 0.26236 1.09861 0.40547
4778 37 2.95307 3.59583 0.11628 3.50134 37 - -
4779 1.38629 1.38629 1.38629 1.38629
4780 0.03672 4.01596 4.01596 1.46634 0.26236 1.09861 0.40547
4781 38 3.09665 2.60026 3.14450 0.17739 38 - -
4782 1.38629 1.38629 1.38629 1.38629
4783 0.03672 4.01596 4.01596 1.46634 0.26236 1.09861 0.40547
4784 39 2.95307 3.59583 0.11628 3.50134 39 - -
4785 1.38629 1.38629 1.38629 1.38629
4786 0.03672 4.01596 4.01596 1.46634 0.26236 1.09861 0.40547
4787 40 3.09665 2.60026 3.14450 0.17739 40 - -
4788 1.38629 1.38629 1.38629 1.38629
4789 0.03672 4.01596 4.01596 1.46634 0.26236 1.09861 0.40547
4790 41 3.44228 0.12912 3.49135 2.83567 41 - -
4791 1.38629 1.38629 1.38629 1.38629
4792 0.03672 4.01596 4.01596 1.46634 0.26236 1.09861 0.40547
4793 42 3.44228 0.12912 3.49135 2.83567 42 - -
4794 1.38629 1.38629 1.38629 1.38629
4795 0.03672 4.01596 4.01596 1.46634 0.26236 1.09861 0.40547
4796 43 2.95307 3.59583 0.11628 3.50134 43 - -
4797 1.38629 1.38629 1.38629 1.38629
4798 0.03672 4.01596 4.01596 1.46634 0.26236 1.09861 0.40547
4799 44 3.09665 2.60026 3.14450 0.17739 44 - -
4800 1.38629 1.38629 1.38629 1.38629
4801 0.03672 4.01596 4.01596 1.46634 0.26236 1.09861 0.40547
4802 45 0.14085 3.38823 2.80709 3.29064 45 - -
4803 1.38629 1.38629 1.38629 1.38629
4804 0.01853 3.99777 * 1.46634 0.26236 0.00000 *
4805 //
4806 HMMER3/b [3.0 | March 2010]
4807 NAME 3_End_Oomycota_58S_end_thirtyfive_long
4808 LENG 45
4809 ALPH DNA
4810 RF no
4811 CS no
4812 MAP yes
4813 DATE Mon Jan 23 23:08:49 2012
4814 NSEQ 2
4815 EFFN 2.000000
4816 CKSUM 2498029638
4817 STATS LOCAL MSV -7.4409 0.72903
4818 STATS LOCAL VITERBI -8.4009 0.72903
4819 STATS LOCAL FORWARD -3.3767 0.72903
4820 HMM A C G T
4821 m->m m->i m->d i->m i->i d->m d->d
4822 COMPO 1.51428 1.48093 1.37290 1.20652
4823 1.38629 1.38629 1.38629 1.38629
4824 0.04879 3.73767 3.73767 1.46634 0.26236 0.00000 *
4825 1 2.81865 0.23582 2.88868 2.35662 1 - -
4826 1.38629 1.38629 1.38629 1.38629
4827 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
4828 2 0.23862 2.84929 2.43386 2.70756 2 - -
4829 1.38629 1.38629 1.38629 1.38629
4830 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
4831 3 2.81865 0.23582 2.88868 2.35662 3 - -
4832 1.38629 1.38629 1.38629 1.38629
4833 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
4834 4 2.57915 2.25909 2.64442 0.28946 4 - -
4835 1.38629 1.38629 1.38629 1.38629
4836 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
4837 5 2.57915 2.25909 2.64442 0.28946 5 - -
4838 1.38629 1.38629 1.38629 1.38629
4839 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
4840 6 2.15554 1.00938 2.23102 0.88601 6 - -
4841 1.38629 1.38629 1.38629 1.38629
4842 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
4843 7 2.81865 0.23582 2.88868 2.35662 7 - -
4844 1.38629 1.38629 1.38629 1.38629
4845 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
4846 8 2.53331 3.02441 0.20344 2.88069 8 - -
4847 1.38629 1.38629 1.38629 1.38629
4848 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
4849 9 2.53331 3.02441 0.20344 2.88069 9 - -
4850 1.38629 1.38629 1.38629 1.38629
4851 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
4852 10 2.53331 3.02441 0.20344 2.88069 10 - -
4853 1.38629 1.38629 1.38629 1.38629
4854 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
4855 11 2.57915 2.25909 2.64442 0.28946 11 - -
4856 1.38629 1.38629 1.38629 1.38629
4857 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
4858 12 2.57915 2.25909 2.64442 0.28946 12 - -
4859 1.38629 1.38629 1.38629 1.38629
4860 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
4861 13 0.23862 2.84929 2.43386 2.70756 13 - -
4862 1.38629 1.38629 1.38629 1.38629
4863 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
4864 14 2.57915 2.25909 2.64442 0.28946 14 - -
4865 1.38629 1.38629 1.38629 1.38629
4866 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
4867 15 0.23862 2.84929 2.43386 2.70756 15 - -
4868 1.38629 1.38629 1.38629 1.38629
4869 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
4870 16 2.81865 0.23582 2.88868 2.35662 16 - -
4871 1.38629 1.38629 1.38629 1.38629
4872 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
4873 17 2.81865 0.23582 2.88868 2.35662 17 - -
4874 1.38629 1.38629 1.38629 1.38629
4875 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
4876 18 2.57915 2.25909 2.64442 0.28946 18 - -
4877 1.38629 1.38629 1.38629 1.38629
4878 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
4879 19 2.53331 3.02441 0.20344 2.88069 19 - -
4880 1.38629 1.38629 1.38629 1.38629
4881 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
4882 20 2.53331 3.02441 0.20344 2.88069 20 - -
4883 1.38629 1.38629 1.38629 1.38629
4884 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
4885 21 0.23862 2.84929 2.43386 2.70756 21 - -
4886 1.38629 1.38629 1.38629 1.38629
4887 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
4888 22 0.23862 2.84929 2.43386 2.70756 22 - -
4889 1.38629 1.38629 1.38629 1.38629
4890 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
4891 23 2.53331 3.02441 0.20344 2.88069 23 - -
4892 1.38629 1.38629 1.38629 1.38629
4893 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
4894 24 2.57915 2.25909 2.64442 0.28946 24 - -
4895 1.38629 1.38629 1.38629 1.38629
4896 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
4897 25 0.23862 2.84929 2.43386 2.70756 25 - -
4898 1.38629 1.38629 1.38629 1.38629
4899 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
4900 26 2.57915 2.25909 2.64442 0.28946 26 - -
4901 1.38629 1.38629 1.38629 1.38629
4902 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
4903 27 2.53331 3.02441 0.20344 2.88069 27 - -
4904 1.38629 1.38629 1.38629 1.38629
4905 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
4906 28 2.57915 2.25909 2.64442 0.28946 28 - -
4907 1.38629 1.38629 1.38629 1.38629
4908 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
4909 29 2.81865 0.23582 2.88868 2.35662 29 - -
4910 1.38629 1.38629 1.38629 1.38629
4911 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
4912 30 2.57915 2.25909 2.64442 0.28946 30 - -
4913 1.38629 1.38629 1.38629 1.38629
4914 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
4915 31 2.53331 3.02441 0.20344 2.88069 31 - -
4916 1.38629 1.38629 1.38629 1.38629
4917 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
4918 32 2.57915 2.25909 2.64442 0.28946 32 - -
4919 1.38629 1.38629 1.38629 1.38629
4920 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
4921 33 0.23862 2.84929 2.43386 2.70756 33 - -
4922 1.38629 1.38629 1.38629 1.38629
4923 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
4924 34 2.57915 2.25909 2.64442 0.28946 34 - -
4925 1.38629 1.38629 1.38629 1.38629
4926 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
4927 35 2.81865 0.23582 2.88868 2.35662 35 - -
4928 1.38629 1.38629 1.38629 1.38629
4929 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
4930 36 0.23862 2.84929 2.43386 2.70756 36 - -
4931 1.38629 1.38629 1.38629 1.38629
4932 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
4933 37 2.53331 3.02441 0.20344 2.88069 37 - -
4934 1.38629 1.38629 1.38629 1.38629
4935 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
4936 38 2.57915 2.25909 2.64442 0.28946 38 - -
4937 1.38629 1.38629 1.38629 1.38629
4938 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
4939 39 2.53331 3.02441 0.20344 2.88069 39 - -
4940 1.38629 1.38629 1.38629 1.38629
4941 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
4942 40 2.57915 2.25909 2.64442 0.28946 40 - -
4943 1.38629 1.38629 1.38629 1.38629
4944 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
4945 41 2.81865 0.23582 2.88868 2.35662 41 - -
4946 1.38629 1.38629 1.38629 1.38629
4947 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
4948 42 2.81865 0.23582 2.88868 2.35662 42 - -
4949 1.38629 1.38629 1.38629 1.38629
4950 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
4951 43 2.53331 3.02441 0.20344 2.88069 43 - -
4952 1.38629 1.38629 1.38629 1.38629
4953 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
4954 44 2.57915 2.25909 2.64442 0.28946 44 - -
4955 1.38629 1.38629 1.38629 1.38629
4956 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
4957 45 0.23862 2.84929 2.43386 2.70756 45 - -
4958 1.38629 1.38629 1.38629 1.38629
4959 0.02469 3.71357 * 1.46634 0.26236 0.00000 *
4960 //
4961 HMMER3/b [3.0 | March 2010]
4962 NAME 3_End_Oomycota_58S_end_thirtyfour_long
4963 LENG 45
4964 ALPH DNA
4965 RF no
4966 CS no
4967 MAP yes
4968 DATE Mon Jan 23 23:08:38 2012
4969 NSEQ 2
4970 EFFN 2.000000
4971 CKSUM 3688506537
4972 STATS LOCAL MSV -7.4526 0.72833
4973 STATS LOCAL VITERBI -8.4105 0.72833
4974 STATS LOCAL FORWARD -3.4748 0.72833
4975 HMM A C G T
4976 m->m m->i m->d i->m i->i d->m d->d
4977 COMPO 1.58650 1.44503 1.32078 1.22863
4978 1.38629 1.38629 1.38629 1.38629
4979 0.04879 3.73767 3.73767 1.46634 0.26236 0.00000 *
4980 1 2.81865 0.23582 2.88868 2.35662 1 - -
4981 1.38629 1.38629 1.38629 1.38629
4982 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
4983 2 0.23862 2.84929 2.43386 2.70756 2 - -
4984 1.38629 1.38629 1.38629 1.38629
4985 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
4986 3 2.81865 0.23582 2.88868 2.35662 3 - -
4987 1.38629 1.38629 1.38629 1.38629
4988 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
4989 4 2.57915 2.25909 2.64442 0.28946 4 - -
4990 1.38629 1.38629 1.38629 1.38629
4991 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
4992 5 2.57915 2.25909 2.64442 0.28946 5 - -
4993 1.38629 1.38629 1.38629 1.38629
4994 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
4995 6 2.57915 2.25909 2.64442 0.28946 6 - -
4996 1.38629 1.38629 1.38629 1.38629
4997 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
4998 7 2.81865 0.23582 2.88868 2.35662 7 - -
4999 1.38629 1.38629 1.38629 1.38629
5000 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
5001 8 2.53331 3.02441 0.20344 2.88069 8 - -
5002 1.38629 1.38629 1.38629 1.38629
5003 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
5004 9 2.53331 3.02441 0.20344 2.88069 9 - -
5005 1.38629 1.38629 1.38629 1.38629
5006 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
5007 10 2.53331 3.02441 0.20344 2.88069 10 - -
5008 1.38629 1.38629 1.38629 1.38629
5009 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
5010 11 2.57915 2.25909 2.64442 0.28946 11 - -
5011 1.38629 1.38629 1.38629 1.38629
5012 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
5013 12 2.57915 2.25909 2.64442 0.28946 12 - -
5014 1.38629 1.38629 1.38629 1.38629
5015 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
5016 13 0.23862 2.84929 2.43386 2.70756 13 - -
5017 1.38629 1.38629 1.38629 1.38629
5018 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
5019 14 2.57915 2.25909 2.64442 0.28946 14 - -
5020 1.38629 1.38629 1.38629 1.38629
5021 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
5022 15 2.53331 3.02441 0.20344 2.88069 15 - -
5023 1.38629 1.38629 1.38629 1.38629
5024 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
5025 16 2.81865 0.23582 2.88868 2.35662 16 - -
5026 1.38629 1.38629 1.38629 1.38629
5027 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
5028 17 2.81865 0.23582 2.88868 2.35662 17 - -
5029 1.38629 1.38629 1.38629 1.38629
5030 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
5031 18 2.57915 2.25909 2.64442 0.28946 18 - -
5032 1.38629 1.38629 1.38629 1.38629
5033 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
5034 19 2.53331 3.02441 0.20344 2.88069 19 - -
5035 1.38629 1.38629 1.38629 1.38629
5036 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
5037 20 2.53331 3.02441 0.20344 2.88069 20 - -
5038 1.38629 1.38629 1.38629 1.38629
5039 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
5040 21 0.23862 2.84929 2.43386 2.70756 21 - -
5041 1.38629 1.38629 1.38629 1.38629
5042 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
5043 22 0.23862 2.84929 2.43386 2.70756 22 - -
5044 1.38629 1.38629 1.38629 1.38629
5045 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
5046 23 2.53331 3.02441 0.20344 2.88069 23 - -
5047 1.38629 1.38629 1.38629 1.38629
5048 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
5049 24 2.57915 2.25909 2.64442 0.28946 24 - -
5050 1.38629 1.38629 1.38629 1.38629
5051 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
5052 25 0.23862 2.84929 2.43386 2.70756 25 - -
5053 1.38629 1.38629 1.38629 1.38629
5054 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
5055 26 2.57915 2.25909 2.64442 0.28946 26 - -
5056 1.38629 1.38629 1.38629 1.38629
5057 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
5058 27 2.53331 3.02441 0.20344 2.88069 27 - -
5059 1.38629 1.38629 1.38629 1.38629
5060 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
5061 28 2.81865 0.23582 2.88868 2.35662 28 - -
5062 1.38629 1.38629 1.38629 1.38629
5063 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
5064 29 2.81865 0.23582 2.88868 2.35662 29 - -
5065 1.38629 1.38629 1.38629 1.38629
5066 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
5067 30 2.57915 2.25909 2.64442 0.28946 30 - -
5068 1.38629 1.38629 1.38629 1.38629
5069 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
5070 31 2.53331 3.02441 0.20344 2.88069 31 - -
5071 1.38629 1.38629 1.38629 1.38629
5072 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
5073 32 2.57915 2.25909 2.64442 0.28946 32 - -
5074 1.38629 1.38629 1.38629 1.38629
5075 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
5076 33 0.23862 2.84929 2.43386 2.70756 33 - -
5077 1.38629 1.38629 1.38629 1.38629
5078 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
5079 34 2.57915 2.25909 2.64442 0.28946 34 - -
5080 1.38629 1.38629 1.38629 1.38629
5081 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
5082 35 2.81865 0.23582 2.88868 2.35662 35 - -
5083 1.38629 1.38629 1.38629 1.38629
5084 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
5085 36 0.23862 2.84929 2.43386 2.70756 36 - -
5086 1.38629 1.38629 1.38629 1.38629
5087 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
5088 37 2.53331 3.02441 0.20344 2.88069 37 - -
5089 1.38629 1.38629 1.38629 1.38629
5090 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
5091 38 2.57915 2.25909 2.64442 0.28946 38 - -
5092 1.38629 1.38629 1.38629 1.38629
5093 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
5094 39 2.53331 3.02441 0.20344 2.88069 39 - -
5095 1.38629 1.38629 1.38629 1.38629
5096 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
5097 40 2.57915 2.25909 2.64442 0.28946 40 - -
5098 1.38629 1.38629 1.38629 1.38629
5099 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
5100 41 2.81865 0.23582 2.88868 2.35662 41 - -
5101 1.38629 1.38629 1.38629 1.38629
5102 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
5103 42 2.81865 0.23582 2.88868 2.35662 42 - -
5104 1.38629 1.38629 1.38629 1.38629
5105 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
5106 43 2.53331 3.02441 0.20344 2.88069 43 - -
5107 1.38629 1.38629 1.38629 1.38629
5108 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
5109 44 2.57915 2.25909 2.64442 0.28946 44 - -
5110 1.38629 1.38629 1.38629 1.38629
5111 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
5112 45 0.23862 2.84929 2.43386 2.70756 45 - -
5113 1.38629 1.38629 1.38629 1.38629
5114 0.02469 3.71357 * 1.46634 0.26236 0.00000 *
5115 //
5116 HMMER3/b [3.0 | March 2010]
5117 NAME 3_End_Oomycota_58S_end_thirtynine_long
5118 LENG 45
5119 ALPH DNA
5120 RF no
5121 CS no
5122 MAP yes
5123 DATE Mon Jan 23 23:09:38 2012
5124 NSEQ 9
5125 EFFN 3.370605
5126 CKSUM 1650032649
5127 STATS LOCAL MSV -7.2507 0.71932
5128 STATS LOCAL VITERBI -7.7539 0.71932
5129 STATS LOCAL FORWARD -4.0767 0.71932
5130 HMM A C G T
5131 m->m m->i m->d i->m i->i d->m d->d
5132 COMPO 1.50750 1.27850 1.23306 1.56693
5133 1.38629 1.38629 1.38629 1.38629
5134 0.03656 4.02009 4.02009 1.46634 0.26236 0.00000 *
5135 1 0.13990 3.39548 2.81180 3.29859 1 - -
5136 1.38629 1.38629 1.38629 1.38629
5137 0.03656 4.02009 4.02009 1.46634 0.26236 1.09861 0.40547
5138 2 3.45064 0.12814 3.49935 2.84174 2 - -
5139 1.38629 1.38629 1.38629 1.38629
5140 0.03656 4.02009 4.02009 1.46634 0.26236 1.09861 0.40547
5141 3 0.72078 2.53778 1.06916 2.39374 3 - -
5142 1.38629 1.38629 1.38629 1.38629
5143 0.03656 4.02009 4.02009 1.46634 0.26236 1.09861 0.40547
5144 4 0.13990 3.39548 2.81180 3.29859 4 - -
5145 1.38629 1.38629 1.38629 1.38629
5146 0.03656 4.02009 4.02009 1.46634 0.26236 1.09861 0.40547
5147 5 3.45064 0.12814 3.49935 2.84174 5 - -
5148 1.38629 1.38629 1.38629 1.38629
5149 0.03656 4.02009 4.02009 1.46634 0.26236 1.09861 0.40547
5150 6 3.45064 0.12814 3.49935 2.84174 6 - -
5151 1.38629 1.38629 1.38629 1.38629
5152 0.03656 4.02009 4.02009 1.46634 0.26236 1.09861 0.40547
5153 7 2.95812 3.60318 0.11549 3.50945 7 - -
5154 1.38629 1.38629 1.38629 1.38629
5155 0.03656 4.02009 4.02009 1.46634 0.26236 1.09861 0.40547
5156 8 2.95812 3.60318 0.11549 3.50945 8 - -
5157 1.38629 1.38629 1.38629 1.38629
5158 0.03656 4.02009 4.02009 1.46634 0.26236 1.09861 0.40547
5159 9 2.95812 3.60318 0.11549 3.50945 9 - -
5160 1.38629 1.38629 1.38629 1.38629
5161 0.03656 4.02009 4.02009 1.46634 0.26236 1.09861 0.40547
5162 10 2.95812 3.60318 0.11549 3.50945 10 - -
5163 1.38629 1.38629 1.38629 1.38629
5164 0.03656 4.02009 4.02009 1.46634 0.26236 1.09861 0.40547
5165 11 0.13990 3.39548 2.81180 3.29859 11 - -
5166 1.38629 1.38629 1.38629 1.38629
5167 0.03656 4.02009 4.02009 1.46634 0.26236 1.09861 0.40547
5168 12 2.70591 0.39851 2.77457 1.61197 12 - -
5169 1.38629 1.38629 1.38629 1.38629
5170 0.03656 4.02009 4.02009 1.46634 0.26236 1.09861 0.40547
5171 13 3.45064 0.12814 3.49935 2.84174 13 - -
5172 1.38629 1.38629 1.38629 1.38629
5173 0.03656 4.02009 4.02009 1.46634 0.26236 1.09861 0.40547
5174 14 0.13990 3.39548 2.81180 3.29859 14 - -
5175 1.38629 1.38629 1.38629 1.38629
5176 0.03656 4.02009 4.02009 1.46634 0.26236 1.09861 0.40547
5177 15 3.10400 2.60493 3.15157 0.17622 15 - -
5178 1.38629 1.38629 1.38629 1.38629
5179 0.03656 4.02009 4.02009 1.46634 0.26236 1.09861 0.40547
5180 16 3.45064 0.12814 3.49935 2.84174 16 - -
5181 1.38629 1.38629 1.38629 1.38629
5182 0.03656 4.02009 4.02009 1.46634 0.26236 1.09861 0.40547
5183 17 3.45064 0.12814 3.49935 2.84174 17 - -
5184 1.38629 1.38629 1.38629 1.38629
5185 0.03656 4.02009 4.02009 1.46634 0.26236 1.09861 0.40547
5186 18 3.45064 0.12814 3.49935 2.84174 18 - -
5187 1.38629 1.38629 1.38629 1.38629
5188 0.03656 4.02009 4.02009 1.46634 0.26236 1.09861 0.40547
5189 19 2.95812 3.60318 0.11549 3.50945 19 - -
5190 1.38629 1.38629 1.38629 1.38629
5191 0.03656 4.02009 4.02009 1.46634 0.26236 1.09861 0.40547
5192 20 2.95812 3.60318 0.11549 3.50945 20 - -
5193 1.38629 1.38629 1.38629 1.38629
5194 0.03656 4.02009 4.02009 1.46634 0.26236 1.09861 0.40547
5195 21 2.95812 3.60318 0.11549 3.50945 21 - -
5196 1.38629 1.38629 1.38629 1.38629
5197 0.03656 4.02009 4.02009 1.46634 0.26236 1.09861 0.40547
5198 22 0.13990 3.39548 2.81180 3.29859 22 - -
5199 1.38629 1.38629 1.38629 1.38629
5200 0.03656 4.02009 4.02009 1.46634 0.26236 1.09861 0.40547
5201 23 2.95812 3.60318 0.11549 3.50945 23 - -
5202 1.38629 1.38629 1.38629 1.38629
5203 0.03656 4.02009 4.02009 1.46634 0.26236 1.09861 0.40547
5204 24 3.10400 2.60493 3.15157 0.17622 24 - -
5205 1.38629 1.38629 1.38629 1.38629
5206 0.03656 4.02009 4.02009 1.46634 0.26236 1.09861 0.40547
5207 25 0.13990 3.39548 2.81180 3.29859 25 - -
5208 1.38629 1.38629 1.38629 1.38629
5209 0.03656 4.02009 4.02009 1.46634 0.26236 1.09861 0.40547
5210 26 3.10400 2.60493 3.15157 0.17622 26 - -
5211 1.38629 1.38629 1.38629 1.38629
5212 0.03656 4.02009 4.02009 1.46634 0.26236 1.09861 0.40547
5213 27 2.95812 3.60318 0.11549 3.50945 27 - -
5214 1.38629 1.38629 1.38629 1.38629
5215 0.03656 4.02009 4.02009 1.46634 0.26236 1.09861 0.40547
5216 28 3.45064 0.12814 3.49935 2.84174 28 - -
5217 1.38629 1.38629 1.38629 1.38629
5218 0.03656 4.02009 4.02009 1.46634 0.26236 1.09861 0.40547
5219 29 3.45064 0.12814 3.49935 2.84174 29 - -
5220 1.38629 1.38629 1.38629 1.38629
5221 0.03656 4.02009 4.02009 1.46634 0.26236 1.09861 0.40547
5222 30 3.10400 2.60493 3.15157 0.17622 30 - -
5223 1.38629 1.38629 1.38629 1.38629
5224 0.03656 4.02009 4.02009 1.46634 0.26236 1.09861 0.40547
5225 31 2.95812 3.60318 0.11549 3.50945 31 - -
5226 1.38629 1.38629 1.38629 1.38629
5227 0.03656 4.02009 4.02009 1.46634 0.26236 1.09861 0.40547
5228 32 3.10400 2.60493 3.15157 0.17622 32 - -
5229 1.38629 1.38629 1.38629 1.38629
5230 0.03656 4.02009 4.02009 1.46634 0.26236 1.09861 0.40547
5231 33 0.13990 3.39548 2.81180 3.29859 33 - -
5232 1.38629 1.38629 1.38629 1.38629
5233 0.03656 4.02009 4.02009 1.46634 0.26236 1.09861 0.40547
5234 34 3.10400 2.60493 3.15157 0.17622 34 - -
5235 1.38629 1.38629 1.38629 1.38629
5236 0.03656 4.02009 4.02009 1.46634 0.26236 1.09861 0.40547
5237 35 3.45064 0.12814 3.49935 2.84174 35 - -
5238 1.38629 1.38629 1.38629 1.38629
5239 0.03656 4.02009 4.02009 1.46634 0.26236 1.09861 0.40547
5240 36 0.13990 3.39548 2.81180 3.29859 36 - -
5241 1.38629 1.38629 1.38629 1.38629
5242 0.03656 4.02009 4.02009 1.46634 0.26236 1.09861 0.40547
5243 37 2.95812 3.60318 0.11549 3.50945 37 - -
5244 1.38629 1.38629 1.38629 1.38629
5245 0.03656 4.02009 4.02009 1.46634 0.26236 1.09861 0.40547
5246 38 3.10400 2.60493 3.15157 0.17622 38 - -
5247 1.38629 1.38629 1.38629 1.38629
5248 0.03656 4.02009 4.02009 1.46634 0.26236 1.09861 0.40547
5249 39 2.95812 3.60318 0.11549 3.50945 39 - -
5250 1.38629 1.38629 1.38629 1.38629
5251 0.03656 4.02009 4.02009 1.46634 0.26236 1.09861 0.40547
5252 40 3.10400 2.60493 3.15157 0.17622 40 - -
5253 1.38629 1.38629 1.38629 1.38629
5254 0.03656 4.02009 4.02009 1.46634 0.26236 1.09861 0.40547
5255 41 3.45064 0.12814 3.49935 2.84174 41 - -
5256 1.38629 1.38629 1.38629 1.38629
5257 0.03656 4.02009 4.02009 1.46634 0.26236 1.09861 0.40547
5258 42 3.45064 0.12814 3.49935 2.84174 42 - -
5259 1.38629 1.38629 1.38629 1.38629
5260 0.03656 4.02009 4.02009 1.46634 0.26236 1.09861 0.40547
5261 43 2.95812 3.60318 0.11549 3.50945 43 - -
5262 1.38629 1.38629 1.38629 1.38629
5263 0.03656 4.02009 4.02009 1.46634 0.26236 1.09861 0.40547
5264 44 3.10400 2.60493 3.15157 0.17622 44 - -
5265 1.38629 1.38629 1.38629 1.38629
5266 0.03656 4.02009 4.02009 1.46634 0.26236 1.09861 0.40547
5267 45 0.13990 3.39548 2.81180 3.29859 45 - -
5268 1.38629 1.38629 1.38629 1.38629
5269 0.01845 4.00197 * 1.46634 0.26236 0.00000 *
5270 //
5271 HMMER3/b [3.0 | March 2010]
5272 NAME 3_End_Oomycota_58S_end_thirtyseven_long
5273 LENG 45
5274 ALPH DNA
5275 RF no
5276 CS no
5277 MAP yes
5278 DATE Mon Jan 23 23:09:16 2012
5279 NSEQ 7
5280 EFFN 3.298340
5281 CKSUM 3156643514
5282 STATS LOCAL MSV -7.8856 0.71932
5283 STATS LOCAL VITERBI -7.8119 0.71932
5284 STATS LOCAL FORWARD -4.3505 0.71932
5285 HMM A C G T
5286 m->m m->i m->d i->m i->i d->m d->d
5287 COMPO 1.72989 1.31007 1.38906 1.19210
5288 1.38629 1.38629 1.38629 1.38629
5289 0.03705 4.00703 4.00703 1.46634 0.26236 0.00000 *
5290 1 3.42409 0.13129 3.47393 2.82243 1 - -
5291 1.38629 1.38629 1.38629 1.38629
5292 0.03705 4.00703 4.00703 1.46634 0.26236 1.09861 0.40547
5293 2 3.08072 2.59012 3.12917 0.17995 2 - -
5294 1.38629 1.38629 1.38629 1.38629
5295 0.03705 4.00703 4.00703 1.46634 0.26236 1.09861 0.40547
5296 3 3.08072 2.59012 3.12917 0.17995 3 - -
5297 1.38629 1.38629 1.38629 1.38629
5298 0.03705 4.00703 4.00703 1.46634 0.26236 1.09861 0.40547
5299 4 3.42409 0.13129 3.47393 2.82243 4 - -
5300 1.38629 1.38629 1.38629 1.38629
5301 0.03705 4.00703 4.00703 1.46634 0.26236 1.09861 0.40547
5302 5 3.08072 2.59012 3.12917 0.17995 5 - -
5303 1.38629 1.38629 1.38629 1.38629
5304 0.03705 4.00703 4.00703 1.46634 0.26236 1.09861 0.40547
5305 6 2.94206 3.57981 0.11803 3.48366 6 - -
5306 1.38629 1.38629 1.38629 1.38629
5307 0.03705 4.00703 4.00703 1.46634 0.26236 1.09861 0.40547
5308 7 2.94206 3.57981 0.11803 3.48366 7 - -
5309 1.38629 1.38629 1.38629 1.38629
5310 0.03705 4.00703 4.00703 1.46634 0.26236 1.09861 0.40547
5311 8 2.94206 3.57981 0.11803 3.48366 8 - -
5312 1.38629 1.38629 1.38629 1.38629
5313 0.03705 4.00703 4.00703 1.46634 0.26236 1.09861 0.40547
5314 9 3.42409 0.13129 3.47393 2.82243 9 - -
5315 1.38629 1.38629 1.38629 1.38629
5316 0.03705 4.00703 4.00703 1.46634 0.26236 1.09861 0.40547
5317 10 3.08072 2.59012 3.12917 0.17995 10 - -
5318 1.38629 1.38629 1.38629 1.38629
5319 0.03705 4.00703 4.00703 1.46634 0.26236 1.09861 0.40547
5320 11 3.42409 0.13129 3.47393 2.82243 11 - -
5321 1.38629 1.38629 1.38629 1.38629
5322 0.03705 4.00703 4.00703 1.46634 0.26236 1.09861 0.40547
5323 12 3.08072 2.59012 3.12917 0.17995 12 - -
5324 1.38629 1.38629 1.38629 1.38629
5325 0.03705 4.00703 4.00703 1.46634 0.26236 1.09861 0.40547
5326 13 3.42409 0.13129 3.47393 2.82243 13 - -
5327 1.38629 1.38629 1.38629 1.38629
5328 0.03705 4.00703 4.00703 1.46634 0.26236 1.09861 0.40547
5329 14 3.08072 2.59012 3.12917 0.17995 14 - -
5330 1.38629 1.38629 1.38629 1.38629
5331 0.03705 4.00703 4.00703 1.46634 0.26236 1.09861 0.40547
5332 15 0.14293 3.37244 2.79684 3.27336 15 - -
5333 1.38629 1.38629 1.38629 1.38629
5334 0.03705 4.00703 4.00703 1.46634 0.26236 1.09861 0.40547
5335 16 3.42409 0.13129 3.47393 2.82243 16 - -
5336 1.38629 1.38629 1.38629 1.38629
5337 0.03705 4.00703 4.00703 1.46634 0.26236 1.09861 0.40547
5338 17 3.08072 2.59012 3.12917 0.17995 17 - -
5339 1.38629 1.38629 1.38629 1.38629
5340 0.03705 4.00703 4.00703 1.46634 0.26236 1.09861 0.40547
5341 18 3.42409 0.13129 3.47393 2.82243 18 - -
5342 1.38629 1.38629 1.38629 1.38629
5343 0.03705 4.00703 4.00703 1.46634 0.26236 1.09861 0.40547
5344 19 0.14293 3.37244 2.79684 3.27336 19 - -
5345 1.38629 1.38629 1.38629 1.38629
5346 0.03705 4.00703 4.00703 1.46634 0.26236 1.09861 0.40547
5347 20 2.94206 3.57981 0.11803 3.48366 20 - -
5348 1.38629 1.38629 1.38629 1.38629
5349 0.03705 4.00703 4.00703 1.46634 0.26236 1.09861 0.40547
5350 21 2.94206 3.57981 0.11803 3.48366 21 - -
5351 1.38629 1.38629 1.38629 1.38629
5352 0.03705 4.00703 4.00703 1.46634 0.26236 1.09861 0.40547
5353 22 0.14293 3.37244 2.79684 3.27336 22 - -
5354 1.38629 1.38629 1.38629 1.38629
5355 0.03705 4.00703 4.00703 1.46634 0.26236 1.09861 0.40547
5356 23 2.94206 3.57981 0.11803 3.48366 23 - -
5357 1.38629 1.38629 1.38629 1.38629
5358 0.03705 4.00703 4.00703 1.46634 0.26236 1.09861 0.40547
5359 24 3.08072 2.59012 3.12917 0.17995 24 - -
5360 1.38629 1.38629 1.38629 1.38629
5361 0.03705 4.00703 4.00703 1.46634 0.26236 1.09861 0.40547
5362 25 0.14293 3.37244 2.79684 3.27336 25 - -
5363 1.38629 1.38629 1.38629 1.38629
5364 0.03705 4.00703 4.00703 1.46634 0.26236 1.09861 0.40547
5365 26 3.08072 2.59012 3.12917 0.17995 26 - -
5366 1.38629 1.38629 1.38629 1.38629
5367 0.03705 4.00703 4.00703 1.46634 0.26236 1.09861 0.40547
5368 27 2.94206 3.57981 0.11803 3.48366 27 - -
5369 1.38629 1.38629 1.38629 1.38629
5370 0.03705 4.00703 4.00703 1.46634 0.26236 1.09861 0.40547
5371 28 3.42409 0.13129 3.47393 2.82243 28 - -
5372 1.38629 1.38629 1.38629 1.38629
5373 0.03705 4.00703 4.00703 1.46634 0.26236 1.09861 0.40547
5374 29 3.42409 0.13129 3.47393 2.82243 29 - -
5375 1.38629 1.38629 1.38629 1.38629
5376 0.03705 4.00703 4.00703 1.46634 0.26236 1.09861 0.40547
5377 30 3.08072 2.59012 3.12917 0.17995 30 - -
5378 1.38629 1.38629 1.38629 1.38629
5379 0.03705 4.00703 4.00703 1.46634 0.26236 1.09861 0.40547
5380 31 2.94206 3.57981 0.11803 3.48366 31 - -
5381 1.38629 1.38629 1.38629 1.38629
5382 0.03705 4.00703 4.00703 1.46634 0.26236 1.09861 0.40547
5383 32 3.08072 2.59012 3.12917 0.17995 32 - -
5384 1.38629 1.38629 1.38629 1.38629
5385 0.03705 4.00703 4.00703 1.46634 0.26236 1.09861 0.40547
5386 33 0.14293 3.37244 2.79684 3.27336 33 - -
5387 1.38629 1.38629 1.38629 1.38629
5388 0.03705 4.00703 4.00703 1.46634 0.26236 1.09861 0.40547
5389 34 3.08072 2.59012 3.12917 0.17995 34 - -
5390 1.38629 1.38629 1.38629 1.38629
5391 0.03705 4.00703 4.00703 1.46634 0.26236 1.09861 0.40547
5392 35 3.42409 0.13129 3.47393 2.82243 35 - -
5393 1.38629 1.38629 1.38629 1.38629
5394 0.03705 4.00703 4.00703 1.46634 0.26236 1.09861 0.40547
5395 36 0.14293 3.37244 2.79684 3.27336 36 - -
5396 1.38629 1.38629 1.38629 1.38629
5397 0.03705 4.00703 4.00703 1.46634 0.26236 1.09861 0.40547
5398 37 2.94206 3.57981 0.11803 3.48366 37 - -
5399 1.38629 1.38629 1.38629 1.38629
5400 0.03705 4.00703 4.00703 1.46634 0.26236 1.09861 0.40547
5401 38 3.08072 2.59012 3.12917 0.17995 38 - -
5402 1.38629 1.38629 1.38629 1.38629
5403 0.03705 4.00703 4.00703 1.46634 0.26236 1.09861 0.40547
5404 39 2.94206 3.57981 0.11803 3.48366 39 - -
5405 1.38629 1.38629 1.38629 1.38629
5406 0.03705 4.00703 4.00703 1.46634 0.26236 1.09861 0.40547
5407 40 3.08072 2.59012 3.12917 0.17995 40 - -
5408 1.38629 1.38629 1.38629 1.38629
5409 0.03705 4.00703 4.00703 1.46634 0.26236 1.09861 0.40547
5410 41 3.42409 0.13129 3.47393 2.82243 41 - -
5411 1.38629 1.38629 1.38629 1.38629
5412 0.03705 4.00703 4.00703 1.46634 0.26236 1.09861 0.40547
5413 42 3.42409 0.13129 3.47393 2.82243 42 - -
5414 1.38629 1.38629 1.38629 1.38629
5415 0.03705 4.00703 4.00703 1.46634 0.26236 1.09861 0.40547
5416 43 2.94206 3.57981 0.11803 3.48366 43 - -
5417 1.38629 1.38629 1.38629 1.38629
5418 0.03705 4.00703 4.00703 1.46634 0.26236 1.09861 0.40547
5419 44 3.08072 2.59012 3.12917 0.17995 44 - -
5420 1.38629 1.38629 1.38629 1.38629
5421 0.03705 4.00703 4.00703 1.46634 0.26236 1.09861 0.40547
5422 45 0.14293 3.37244 2.79684 3.27336 45 - -
5423 1.38629 1.38629 1.38629 1.38629
5424 0.01870 3.98868 * 1.46634 0.26236 0.00000 *
5425 //
5426 HMMER3/b [3.0 | March 2010]
5427 NAME 3_End_Oomycota_58S_end_thirtysix_long
5428 LENG 45
5429 ALPH DNA
5430 RF no
5431 CS no
5432 MAP yes
5433 DATE Mon Jan 23 23:09:02 2012
5434 NSEQ 5
5435 EFFN 3.325195
5436 CKSUM 2741607073
5437 STATS LOCAL MSV -8.1122 0.71933
5438 STATS LOCAL VITERBI -7.8558 0.71933
5439 STATS LOCAL FORWARD -4.0391 0.71933
5440 HMM A C G T
5441 m->m m->i m->d i->m i->i d->m d->d
5442 COMPO 1.54604 1.35561 1.25272 1.41307
5443 1.38629 1.38629 1.38629 1.38629
5444 0.03687 4.01190 4.01190 1.46634 0.26236 0.00000 *
5445 1 0.14179 3.38107 2.80245 3.28281 1 - -
5446 1.38629 1.38629 1.38629 1.38629
5447 0.03687 4.01190 4.01190 1.46634 0.26236 1.09861 0.40547
5448 2 3.43404 0.13010 3.48346 2.82967 2 - -
5449 1.38629 1.38629 1.38629 1.38629
5450 0.03687 4.01190 4.01190 1.46634 0.26236 1.09861 0.40547
5451 3 3.08942 2.59566 3.13755 0.17855 3 - -
5452 1.38629 1.38629 1.38629 1.38629
5453 0.03687 4.01190 4.01190 1.46634 0.26236 1.09861 0.40547
5454 4 0.14179 3.38107 2.80245 3.28281 4 - -
5455 1.38629 1.38629 1.38629 1.38629
5456 0.03687 4.01190 4.01190 1.46634 0.26236 1.09861 0.40547
5457 5 3.43404 0.13010 3.48346 2.82967 5 - -
5458 1.38629 1.38629 1.38629 1.38629
5459 0.03687 4.01190 4.01190 1.46634 0.26236 1.09861 0.40547
5460 6 3.43404 0.13010 3.48346 2.82967 6 - -
5461 1.38629 1.38629 1.38629 1.38629
5462 0.03687 4.01190 4.01190 1.46634 0.26236 1.09861 0.40547
5463 7 2.94809 3.58857 0.11707 3.49333 7 - -
5464 1.38629 1.38629 1.38629 1.38629
5465 0.03687 4.01190 4.01190 1.46634 0.26236 1.09861 0.40547
5466 8 2.94809 3.58857 0.11707 3.49333 8 - -
5467 1.38629 1.38629 1.38629 1.38629
5468 0.03687 4.01190 4.01190 1.46634 0.26236 1.09861 0.40547
5469 9 2.94809 3.58857 0.11707 3.49333 9 - -
5470 1.38629 1.38629 1.38629 1.38629
5471 0.03687 4.01190 4.01190 1.46634 0.26236 1.09861 0.40547
5472 10 3.08942 2.59566 3.13755 0.17855 10 - -
5473 1.38629 1.38629 1.38629 1.38629
5474 0.03687 4.01190 4.01190 1.46634 0.26236 1.09861 0.40547
5475 11 3.08942 2.59566 3.13755 0.17855 11 - -
5476 1.38629 1.38629 1.38629 1.38629
5477 0.03687 4.01190 4.01190 1.46634 0.26236 1.09861 0.40547
5478 12 0.14179 3.38107 2.80245 3.28281 12 - -
5479 1.38629 1.38629 1.38629 1.38629
5480 0.03687 4.01190 4.01190 1.46634 0.26236 1.09861 0.40547
5481 13 3.43404 0.13010 3.48346 2.82967 13 - -
5482 1.38629 1.38629 1.38629 1.38629
5483 0.03687 4.01190 4.01190 1.46634 0.26236 1.09861 0.40547
5484 14 0.14179 3.38107 2.80245 3.28281 14 - -
5485 1.38629 1.38629 1.38629 1.38629
5486 0.03687 4.01190 4.01190 1.46634 0.26236 1.09861 0.40547
5487 15 2.94809 3.58857 0.11707 3.49333 15 - -
5488 1.38629 1.38629 1.38629 1.38629
5489 0.03687 4.01190 4.01190 1.46634 0.26236 1.09861 0.40547
5490 16 3.43404 0.13010 3.48346 2.82967 16 - -
5491 1.38629 1.38629 1.38629 1.38629
5492 0.03687 4.01190 4.01190 1.46634 0.26236 1.09861 0.40547
5493 17 2.43340 0.73754 2.50592 1.04307 17 - -
5494 1.38629 1.38629 1.38629 1.38629
5495 0.03687 4.01190 4.01190 1.46634 0.26236 1.09861 0.40547
5496 18 3.43404 0.13010 3.48346 2.82967 18 - -
5497 1.38629 1.38629 1.38629 1.38629
5498 0.03687 4.01190 4.01190 1.46634 0.26236 1.09861 0.40547
5499 19 2.94809 3.58857 0.11707 3.49333 19 - -
5500 1.38629 1.38629 1.38629 1.38629
5501 0.03687 4.01190 4.01190 1.46634 0.26236 1.09861 0.40547
5502 20 2.94809 3.58857 0.11707 3.49333 20 - -
5503 1.38629 1.38629 1.38629 1.38629
5504 0.03687 4.01190 4.01190 1.46634 0.26236 1.09861 0.40547
5505 21 2.94809 3.58857 0.11707 3.49333 21 - -
5506 1.38629 1.38629 1.38629 1.38629
5507 0.03687 4.01190 4.01190 1.46634 0.26236 1.09861 0.40547
5508 22 0.14179 3.38107 2.80245 3.28281 22 - -
5509 1.38629 1.38629 1.38629 1.38629
5510 0.03687 4.01190 4.01190 1.46634 0.26236 1.09861 0.40547
5511 23 2.94809 3.58857 0.11707 3.49333 23 - -
5512 1.38629 1.38629 1.38629 1.38629
5513 0.03687 4.01190 4.01190 1.46634 0.26236 1.09861 0.40547
5514 24 3.08942 2.59566 3.13755 0.17855 24 - -
5515 1.38629 1.38629 1.38629 1.38629
5516 0.03687 4.01190 4.01190 1.46634 0.26236 1.09861 0.40547
5517 25 0.14179 3.38107 2.80245 3.28281 25 - -
5518 1.38629 1.38629 1.38629 1.38629
5519 0.03687 4.01190 4.01190 1.46634 0.26236 1.09861 0.40547
5520 26 3.08942 2.59566 3.13755 0.17855 26 - -
5521 1.38629 1.38629 1.38629 1.38629
5522 0.03687 4.01190 4.01190 1.46634 0.26236 1.09861 0.40547
5523 27 2.94809 3.58857 0.11707 3.49333 27 - -
5524 1.38629 1.38629 1.38629 1.38629
5525 0.03687 4.01190 4.01190 1.46634 0.26236 1.09861 0.40547
5526 28 3.43404 0.13010 3.48346 2.82967 28 - -
5527 1.38629 1.38629 1.38629 1.38629
5528 0.03687 4.01190 4.01190 1.46634 0.26236 1.09861 0.40547
5529 29 3.43404 0.13010 3.48346 2.82967 29 - -
5530 1.38629 1.38629 1.38629 1.38629
5531 0.03687 4.01190 4.01190 1.46634 0.26236 1.09861 0.40547
5532 30 3.08942 2.59566 3.13755 0.17855 30 - -
5533 1.38629 1.38629 1.38629 1.38629
5534 0.03687 4.01190 4.01190 1.46634 0.26236 1.09861 0.40547
5535 31 2.94809 3.58857 0.11707 3.49333 31 - -
5536 1.38629 1.38629 1.38629 1.38629
5537 0.03687 4.01190 4.01190 1.46634 0.26236 1.09861 0.40547
5538 32 3.08942 2.59566 3.13755 0.17855 32 - -
5539 1.38629 1.38629 1.38629 1.38629
5540 0.03687 4.01190 4.01190 1.46634 0.26236 1.09861 0.40547
5541 33 0.14179 3.38107 2.80245 3.28281 33 - -
5542 1.38629 1.38629 1.38629 1.38629
5543 0.03687 4.01190 4.01190 1.46634 0.26236 1.09861 0.40547
5544 34 3.08942 2.59566 3.13755 0.17855 34 - -
5545 1.38629 1.38629 1.38629 1.38629
5546 0.03687 4.01190 4.01190 1.46634 0.26236 1.09861 0.40547
5547 35 3.43404 0.13010 3.48346 2.82967 35 - -
5548 1.38629 1.38629 1.38629 1.38629
5549 0.03687 4.01190 4.01190 1.46634 0.26236 1.09861 0.40547
5550 36 0.14179 3.38107 2.80245 3.28281 36 - -
5551 1.38629 1.38629 1.38629 1.38629
5552 0.03687 4.01190 4.01190 1.46634 0.26236 1.09861 0.40547
5553 37 2.94809 3.58857 0.11707 3.49333 37 - -
5554 1.38629 1.38629 1.38629 1.38629
5555 0.03687 4.01190 4.01190 1.46634 0.26236 1.09861 0.40547
5556 38 3.08942 2.59566 3.13755 0.17855 38 - -
5557 1.38629 1.38629 1.38629 1.38629
5558 0.03687 4.01190 4.01190 1.46634 0.26236 1.09861 0.40547
5559 39 2.94809 3.58857 0.11707 3.49333 39 - -
5560 1.38629 1.38629 1.38629 1.38629
5561 0.03687 4.01190 4.01190 1.46634 0.26236 1.09861 0.40547
5562 40 3.08942 2.59566 3.13755 0.17855 40 - -
5563 1.38629 1.38629 1.38629 1.38629
5564 0.03687 4.01190 4.01190 1.46634 0.26236 1.09861 0.40547
5565 41 3.43404 0.13010 3.48346 2.82967 41 - -
5566 1.38629 1.38629 1.38629 1.38629
5567 0.03687 4.01190 4.01190 1.46634 0.26236 1.09861 0.40547
5568 42 3.43404 0.13010 3.48346 2.82967 42 - -
5569 1.38629 1.38629 1.38629 1.38629
5570 0.03687 4.01190 4.01190 1.46634 0.26236 1.09861 0.40547
5571 43 2.94809 3.58857 0.11707 3.49333 43 - -
5572 1.38629 1.38629 1.38629 1.38629
5573 0.03687 4.01190 4.01190 1.46634 0.26236 1.09861 0.40547
5574 44 3.08942 2.59566 3.13755 0.17855 44 - -
5575 1.38629 1.38629 1.38629 1.38629
5576 0.03687 4.01190 4.01190 1.46634 0.26236 1.09861 0.40547
5577 45 0.14179 3.38107 2.80245 3.28281 45 - -
5578 1.38629 1.38629 1.38629 1.38629
5579 0.01860 3.99364 * 1.46634 0.26236 0.00000 *
5580 //
5581 HMMER3/b [3.0 | March 2010]
5582 NAME 3_End_Oomycota_58S_end_thirtythree_long
5583 LENG 45
5584 ALPH DNA
5585 RF no
5586 CS no
5587 MAP yes
5588 DATE Mon Jan 23 23:08:25 2012
5589 NSEQ 6
5590 EFFN 3.377930
5591 CKSUM 3964629881
5592 STATS LOCAL MSV -7.3148 0.71932
5593 STATS LOCAL VITERBI -7.7351 0.71932
5594 STATS LOCAL FORWARD -3.9782 0.71932
5595 HMM A C G T
5596 m->m m->i m->d i->m i->i d->m d->d
5597 COMPO 1.70369 1.37651 1.27975 1.24680
5598 1.38629 1.38629 1.38629 1.38629
5599 0.03651 4.02140 4.02140 1.46634 0.26236 0.00000 *
5600 1 3.45329 0.12783 3.50189 2.84367 1 - -
5601 1.38629 1.38629 1.38629 1.38629
5602 0.03651 4.02140 4.02140 1.46634 0.26236 1.09861 0.40547
5603 2 0.13960 3.39779 2.81330 3.30112 2 - -
5604 1.38629 1.38629 1.38629 1.38629
5605 0.03651 4.02140 4.02140 1.46634 0.26236 1.09861 0.40547
5606 3 3.45329 0.12783 3.50189 2.84367 3 - -
5607 1.38629 1.38629 1.38629 1.38629
5608 0.03651 4.02140 4.02140 1.46634 0.26236 1.09861 0.40547
5609 4 3.10634 2.60641 3.15381 0.17585 4 - -
5610 1.38629 1.38629 1.38629 1.38629
5611 0.03651 4.02140 4.02140 1.46634 0.26236 1.09861 0.40547
5612 5 3.10634 2.60641 3.15381 0.17585 5 - -
5613 1.38629 1.38629 1.38629 1.38629
5614 0.03651 4.02140 4.02140 1.46634 0.26236 1.09861 0.40547
5615 6 3.45329 0.12783 3.50189 2.84367 6 - -
5616 1.38629 1.38629 1.38629 1.38629
5617 0.03651 4.02140 4.02140 1.46634 0.26236 1.09861 0.40547
5618 7 3.45329 0.12783 3.50189 2.84367 7 - -
5619 1.38629 1.38629 1.38629 1.38629
5620 0.03651 4.02140 4.02140 1.46634 0.26236 1.09861 0.40547
5621 8 2.95971 3.60551 0.11524 3.51203 8 - -
5622 1.38629 1.38629 1.38629 1.38629
5623 0.03651 4.02140 4.02140 1.46634 0.26236 1.09861 0.40547
5624 9 2.95971 3.60551 0.11524 3.51203 9 - -
5625 1.38629 1.38629 1.38629 1.38629
5626 0.03651 4.02140 4.02140 1.46634 0.26236 1.09861 0.40547
5627 10 2.95971 3.60551 0.11524 3.51203 10 - -
5628 1.38629 1.38629 1.38629 1.38629
5629 0.03651 4.02140 4.02140 1.46634 0.26236 1.09861 0.40547
5630 11 3.10634 2.60641 3.15381 0.17585 11 - -
5631 1.38629 1.38629 1.38629 1.38629
5632 0.03651 4.02140 4.02140 1.46634 0.26236 1.09861 0.40547
5633 12 3.10634 2.60641 3.15381 0.17585 12 - -
5634 1.38629 1.38629 1.38629 1.38629
5635 0.03651 4.02140 4.02140 1.46634 0.26236 1.09861 0.40547
5636 13 0.13960 3.39779 2.81330 3.30112 13 - -
5637 1.38629 1.38629 1.38629 1.38629
5638 0.03651 4.02140 4.02140 1.46634 0.26236 1.09861 0.40547
5639 14 2.95971 3.60551 0.11524 3.51203 14 - -
5640 1.38629 1.38629 1.38629 1.38629
5641 0.03651 4.02140 4.02140 1.46634 0.26236 1.09861 0.40547
5642 15 3.10634 2.60641 3.15381 0.17585 15 - -
5643 1.38629 1.38629 1.38629 1.38629
5644 0.03651 4.02140 4.02140 1.46634 0.26236 1.09861 0.40547
5645 16 3.45329 0.12783 3.50189 2.84367 16 - -
5646 1.38629 1.38629 1.38629 1.38629
5647 0.03651 4.02140 4.02140 1.46634 0.26236 1.09861 0.40547
5648 17 3.45329 0.12783 3.50189 2.84367 17 - -
5649 1.38629 1.38629 1.38629 1.38629
5650 0.03651 4.02140 4.02140 1.46634 0.26236 1.09861 0.40547
5651 18 3.10634 2.60641 3.15381 0.17585 18 - -
5652 1.38629 1.38629 1.38629 1.38629
5653 0.03651 4.02140 4.02140 1.46634 0.26236 1.09861 0.40547
5654 19 2.95971 3.60551 0.11524 3.51203 19 - -
5655 1.38629 1.38629 1.38629 1.38629
5656 0.03651 4.02140 4.02140 1.46634 0.26236 1.09861 0.40547
5657 20 2.95971 3.60551 0.11524 3.51203 20 - -
5658 1.38629 1.38629 1.38629 1.38629
5659 0.03651 4.02140 4.02140 1.46634 0.26236 1.09861 0.40547
5660 21 1.35702 2.66681 0.52246 2.52523 21 - -
5661 1.38629 1.38629 1.38629 1.38629
5662 0.03651 4.02140 4.02140 1.46634 0.26236 1.09861 0.40547
5663 22 0.13960 3.39779 2.81330 3.30112 22 - -
5664 1.38629 1.38629 1.38629 1.38629
5665 0.03651 4.02140 4.02140 1.46634 0.26236 1.09861 0.40547
5666 23 2.95971 3.60551 0.11524 3.51203 23 - -
5667 1.38629 1.38629 1.38629 1.38629
5668 0.03651 4.02140 4.02140 1.46634 0.26236 1.09861 0.40547
5669 24 3.10634 2.60641 3.15381 0.17585 24 - -
5670 1.38629 1.38629 1.38629 1.38629
5671 0.03651 4.02140 4.02140 1.46634 0.26236 1.09861 0.40547
5672 25 0.13960 3.39779 2.81330 3.30112 25 - -
5673 1.38629 1.38629 1.38629 1.38629
5674 0.03651 4.02140 4.02140 1.46634 0.26236 1.09861 0.40547
5675 26 3.10634 2.60641 3.15381 0.17585 26 - -
5676 1.38629 1.38629 1.38629 1.38629
5677 0.03651 4.02140 4.02140 1.46634 0.26236 1.09861 0.40547
5678 27 2.95971 3.60551 0.11524 3.51203 27 - -
5679 1.38629 1.38629 1.38629 1.38629
5680 0.03651 4.02140 4.02140 1.46634 0.26236 1.09861 0.40547
5681 28 3.45329 0.12783 3.50189 2.84367 28 - -
5682 1.38629 1.38629 1.38629 1.38629
5683 0.03651 4.02140 4.02140 1.46634 0.26236 1.09861 0.40547
5684 29 3.45329 0.12783 3.50189 2.84367 29 - -
5685 1.38629 1.38629 1.38629 1.38629
5686 0.03651 4.02140 4.02140 1.46634 0.26236 1.09861 0.40547
5687 30 3.10634 2.60641 3.15381 0.17585 30 - -
5688 1.38629 1.38629 1.38629 1.38629
5689 0.03651 4.02140 4.02140 1.46634 0.26236 1.09861 0.40547
5690 31 2.95971 3.60551 0.11524 3.51203 31 - -
5691 1.38629 1.38629 1.38629 1.38629
5692 0.03651 4.02140 4.02140 1.46634 0.26236 1.09861 0.40547
5693 32 3.10634 2.60641 3.15381 0.17585 32 - -
5694 1.38629 1.38629 1.38629 1.38629
5695 0.03651 4.02140 4.02140 1.46634 0.26236 1.09861 0.40547
5696 33 0.13960 3.39779 2.81330 3.30112 33 - -
5697 1.38629 1.38629 1.38629 1.38629
5698 0.03651 4.02140 4.02140 1.46634 0.26236 1.09861 0.40547
5699 34 3.10634 2.60641 3.15381 0.17585 34 - -
5700 1.38629 1.38629 1.38629 1.38629
5701 0.03651 4.02140 4.02140 1.46634 0.26236 1.09861 0.40547
5702 35 3.45329 0.12783 3.50189 2.84367 35 - -
5703 1.38629 1.38629 1.38629 1.38629
5704 0.03651 4.02140 4.02140 1.46634 0.26236 1.09861 0.40547
5705 36 0.13960 3.39779 2.81330 3.30112 36 - -
5706 1.38629 1.38629 1.38629 1.38629
5707 0.03651 4.02140 4.02140 1.46634 0.26236 1.09861 0.40547
5708 37 2.95971 3.60551 0.11524 3.51203 37 - -
5709 1.38629 1.38629 1.38629 1.38629
5710 0.03651 4.02140 4.02140 1.46634 0.26236 1.09861 0.40547
5711 38 3.10634 2.60641 3.15381 0.17585 38 - -
5712 1.38629 1.38629 1.38629 1.38629
5713 0.03651 4.02140 4.02140 1.46634 0.26236 1.09861 0.40547
5714 39 2.95971 3.60551 0.11524 3.51203 39 - -
5715 1.38629 1.38629 1.38629 1.38629
5716 0.03651 4.02140 4.02140 1.46634 0.26236 1.09861 0.40547
5717 40 3.10634 2.60641 3.15381 0.17585 40 - -
5718 1.38629 1.38629 1.38629 1.38629
5719 0.03651 4.02140 4.02140 1.46634 0.26236 1.09861 0.40547
5720 41 3.45329 0.12783 3.50189 2.84367 41 - -
5721 1.38629 1.38629 1.38629 1.38629
5722 0.03651 4.02140 4.02140 1.46634 0.26236 1.09861 0.40547
5723 42 3.45329 0.12783 3.50189 2.84367 42 - -
5724 1.38629 1.38629 1.38629 1.38629
5725 0.03651 4.02140 4.02140 1.46634 0.26236 1.09861 0.40547
5726 43 2.95971 3.60551 0.11524 3.51203 43 - -
5727 1.38629 1.38629 1.38629 1.38629
5728 0.03651 4.02140 4.02140 1.46634 0.26236 1.09861 0.40547
5729 44 3.10634 2.60641 3.15381 0.17585 44 - -
5730 1.38629 1.38629 1.38629 1.38629
5731 0.03651 4.02140 4.02140 1.46634 0.26236 1.09861 0.40547
5732 45 0.13960 3.39779 2.81330 3.30112 45 - -
5733 1.38629 1.38629 1.38629 1.38629
5734 0.01842 4.00331 * 1.46634 0.26236 0.00000 *
5735 //
5736 HMMER3/b [3.0 | March 2010]
5737 NAME 3_End_Oomycota_58S_end_thirtytwo_long
5738 LENG 45
5739 ALPH DNA
5740 RF no
5741 CS no
5742 MAP yes
5743 DATE Mon Jan 23 23:08:16 2012
5744 NSEQ 3
5745 EFFN 3.000000
5746 CKSUM 674843736
5747 STATS LOCAL MSV -8.1333 0.72019
5748 STATS LOCAL VITERBI -7.8697 0.72019
5749 STATS LOCAL FORWARD -3.9771 0.72019
5750 HMM A C G T
5751 m->m m->i m->d i->m i->i d->m d->d
5752 COMPO 1.71592 1.26204 1.26107 1.37130
5753 1.38629 1.38629 1.38629 1.38629
5754 0.03922 3.95124 3.95124 1.46634 0.26236 0.00000 *
5755 1 0.15719 3.27118 2.73043 3.16274 1 - -
5756 1.38629 1.38629 1.38629 1.38629
5757 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
5758 2 3.30705 0.14631 3.36166 2.73626 2 - -
5759 1.38629 1.38629 1.38629 1.38629
5760 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
5761 3 2.97980 2.52563 3.03204 0.19727 3 - -
5762 1.38629 1.38629 1.38629 1.38629
5763 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
5764 4 3.30705 0.14631 3.36166 2.73626 4 - -
5765 1.38629 1.38629 1.38629 1.38629
5766 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
5767 5 2.97980 2.52563 3.03204 0.19727 5 - -
5768 1.38629 1.38629 1.38629 1.38629
5769 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
5770 6 3.30705 0.14631 3.36166 2.73626 6 - -
5771 1.38629 1.38629 1.38629 1.38629
5772 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
5773 7 2.86982 3.47591 0.13017 3.36931 7 - -
5774 1.38629 1.38629 1.38629 1.38629
5775 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
5776 8 2.86982 3.47591 0.13017 3.36931 8 - -
5777 1.38629 1.38629 1.38629 1.38629
5778 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
5779 9 2.86982 3.47591 0.13017 3.36931 9 - -
5780 1.38629 1.38629 1.38629 1.38629
5781 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
5782 10 2.97980 2.52563 3.03204 0.19727 10 - -
5783 1.38629 1.38629 1.38629 1.38629
5784 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
5785 11 2.97980 2.52563 3.03204 0.19727 11 - -
5786 1.38629 1.38629 1.38629 1.38629
5787 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
5788 12 3.30705 0.14631 3.36166 2.73626 12 - -
5789 1.38629 1.38629 1.38629 1.38629
5790 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
5791 13 0.15719 3.27118 2.73043 3.16274 13 - -
5792 1.38629 1.38629 1.38629 1.38629
5793 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
5794 14 2.86982 3.47591 0.13017 3.36931 14 - -
5795 1.38629 1.38629 1.38629 1.38629
5796 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
5797 15 3.30705 0.14631 3.36166 2.73626 15 - -
5798 1.38629 1.38629 1.38629 1.38629
5799 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
5800 16 3.30705 0.14631 3.36166 2.73626 16 - -
5801 1.38629 1.38629 1.38629 1.38629
5802 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
5803 17 3.30705 0.14631 3.36166 2.73626 17 - -
5804 1.38629 1.38629 1.38629 1.38629
5805 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
5806 18 3.30705 0.14631 3.36166 2.73626 18 - -
5807 1.38629 1.38629 1.38629 1.38629
5808 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
5809 19 2.86982 3.47591 0.13017 3.36931 19 - -
5810 1.38629 1.38629 1.38629 1.38629
5811 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
5812 20 2.86982 3.47591 0.13017 3.36931 20 - -
5813 1.38629 1.38629 1.38629 1.38629
5814 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
5815 21 2.86982 3.47591 0.13017 3.36931 21 - -
5816 1.38629 1.38629 1.38629 1.38629
5817 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
5818 22 0.15719 3.27118 2.73043 3.16274 22 - -
5819 1.38629 1.38629 1.38629 1.38629
5820 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
5821 23 2.86982 3.47591 0.13017 3.36931 23 - -
5822 1.38629 1.38629 1.38629 1.38629
5823 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
5824 24 2.97980 2.52563 3.03204 0.19727 24 - -
5825 1.38629 1.38629 1.38629 1.38629
5826 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
5827 25 0.15719 3.27118 2.73043 3.16274 25 - -
5828 1.38629 1.38629 1.38629 1.38629
5829 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
5830 26 2.97980 2.52563 3.03204 0.19727 26 - -
5831 1.38629 1.38629 1.38629 1.38629
5832 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
5833 27 2.86982 3.47591 0.13017 3.36931 27 - -
5834 1.38629 1.38629 1.38629 1.38629
5835 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
5836 28 3.30705 0.14631 3.36166 2.73626 28 - -
5837 1.38629 1.38629 1.38629 1.38629
5838 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
5839 29 3.30705 0.14631 3.36166 2.73626 29 - -
5840 1.38629 1.38629 1.38629 1.38629
5841 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
5842 30 2.97980 2.52563 3.03204 0.19727 30 - -
5843 1.38629 1.38629 1.38629 1.38629
5844 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
5845 31 2.86982 3.47591 0.13017 3.36931 31 - -
5846 1.38629 1.38629 1.38629 1.38629
5847 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
5848 32 2.97980 2.52563 3.03204 0.19727 32 - -
5849 1.38629 1.38629 1.38629 1.38629
5850 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
5851 33 0.15719 3.27118 2.73043 3.16274 33 - -
5852 1.38629 1.38629 1.38629 1.38629
5853 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
5854 34 2.97980 2.52563 3.03204 0.19727 34 - -
5855 1.38629 1.38629 1.38629 1.38629
5856 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
5857 35 3.30705 0.14631 3.36166 2.73626 35 - -
5858 1.38629 1.38629 1.38629 1.38629
5859 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
5860 36 0.15719 3.27118 2.73043 3.16274 36 - -
5861 1.38629 1.38629 1.38629 1.38629
5862 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
5863 37 2.86982 3.47591 0.13017 3.36931 37 - -
5864 1.38629 1.38629 1.38629 1.38629
5865 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
5866 38 2.97980 2.52563 3.03204 0.19727 38 - -
5867 1.38629 1.38629 1.38629 1.38629
5868 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
5869 39 2.86982 3.47591 0.13017 3.36931 39 - -
5870 1.38629 1.38629 1.38629 1.38629
5871 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
5872 40 2.97980 2.52563 3.03204 0.19727 40 - -
5873 1.38629 1.38629 1.38629 1.38629
5874 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
5875 41 3.30705 0.14631 3.36166 2.73626 41 - -
5876 1.38629 1.38629 1.38629 1.38629
5877 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
5878 42 3.30705 0.14631 3.36166 2.73626 42 - -
5879 1.38629 1.38629 1.38629 1.38629
5880 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
5881 43 2.86982 3.47591 0.13017 3.36931 43 - -
5882 1.38629 1.38629 1.38629 1.38629
5883 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
5884 44 2.97980 2.52563 3.03204 0.19727 44 - -
5885 1.38629 1.38629 1.38629 1.38629
5886 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
5887 45 0.15719 3.27118 2.73043 3.16274 45 - -
5888 1.38629 1.38629 1.38629 1.38629
5889 0.01980 3.93183 * 1.46634 0.26236 0.00000 *
5890 //
5891 HMMER3/b [3.0 | March 2010]
5892 NAME 3_End_Oomycota_58S_end_three_long
5893 LENG 45
5894 ALPH DNA
5895 RF no
5896 CS no
5897 MAP yes
5898 DATE Mon Jan 23 23:02:06 2012
5899 NSEQ 183
5900 EFFN 3.308945
5901 CKSUM 3389557377
5902 STATS LOCAL MSV -7.9922 0.71932
5903 STATS LOCAL VITERBI -7.8208 0.71932
5904 STATS LOCAL FORWARD -3.8675 0.71932
5905 HMM A C G T
5906 m->m m->i m->d i->m i->i d->m d->d
5907 COMPO 1.81846 1.51995 1.19935 1.14693
5908 1.38629 1.38629 1.38629 1.38629
5909 0.03698 4.00896 4.00896 1.46634 0.26236 0.00000 *
5910 1 3.42803 0.13081 3.47770 2.82530 1 - -
5911 1.38629 1.38629 1.38629 1.38629
5912 0.03698 4.00896 4.00896 1.46634 0.26236 1.09861 0.40547
5913 2 0.14248 3.37586 2.79906 3.27710 2 - -
5914 1.38629 1.38629 1.38629 1.38629
5915 0.03698 4.00896 4.00896 1.46634 0.26236 1.09861 0.40547
5916 3 3.42803 0.13081 3.47770 2.82530 3 - -
5917 1.38629 1.38629 1.38629 1.38629
5918 0.03698 4.00896 4.00896 1.46634 0.26236 1.09861 0.40547
5919 4 3.08416 2.59231 3.13249 0.17939 4 - -
5920 1.38629 1.38629 1.38629 1.38629
5921 0.03698 4.00896 4.00896 1.46634 0.26236 1.09861 0.40547
5922 5 3.04267 2.48950 3.09234 0.19365 5 - -
5923 1.38629 1.38629 1.38629 1.38629
5924 0.03698 4.00896 4.00896 1.46634 0.26236 1.09861 0.40547
5925 6 3.42803 0.13081 3.47770 2.82530 6 - -
5926 1.38629 1.38629 1.38629 1.38629
5927 0.03698 4.00896 4.00896 1.46634 0.26236 1.09861 0.40547
5928 7 3.42803 0.13081 3.47770 2.82530 7 - -
5929 1.38629 1.38629 1.38629 1.38629
5930 0.03698 4.00896 4.00896 1.46634 0.26236 1.09861 0.40547
5931 8 2.94445 3.58328 0.11765 3.48749 8 - -
5932 1.38629 1.38629 1.38629 1.38629
5933 0.03698 4.00896 4.00896 1.46634 0.26236 1.09861 0.40547
5934 9 2.94445 3.58328 0.11765 3.48749 9 - -
5935 1.38629 1.38629 1.38629 1.38629
5936 0.03698 4.00896 4.00896 1.46634 0.26236 1.09861 0.40547
5937 10 2.94445 3.58328 0.11765 3.48749 10 - -
5938 1.38629 1.38629 1.38629 1.38629
5939 0.03698 4.00896 4.00896 1.46634 0.26236 1.09861 0.40547
5940 11 3.08416 2.59231 3.13249 0.17939 11 - -
5941 1.38629 1.38629 1.38629 1.38629
5942 0.03698 4.00896 4.00896 1.46634 0.26236 1.09861 0.40547
5943 12 3.08416 2.59231 3.13249 0.17939 12 - -
5944 1.38629 1.38629 1.38629 1.38629
5945 0.03698 4.00896 4.00896 1.46634 0.26236 1.09861 0.40547
5946 13 0.14248 3.37586 2.79906 3.27710 13 - -
5947 1.38629 1.38629 1.38629 1.38629
5948 0.03698 4.00896 4.00896 1.46634 0.26236 1.09861 0.40547
5949 14 2.94445 3.58328 0.11765 3.48749 14 - -
5950 1.38629 1.38629 1.38629 1.38629
5951 0.03698 4.00896 4.00896 1.46634 0.26236 1.09861 0.40547
5952 15 3.08416 2.59231 3.13249 0.17939 15 - -
5953 1.38629 1.38629 1.38629 1.38629
5954 0.03698 4.00896 4.00896 1.46634 0.26236 1.09861 0.40547
5955 16 3.42803 0.13081 3.47770 2.82530 16 - -
5956 1.38629 1.38629 1.38629 1.38629
5957 0.03698 4.00896 4.00896 1.46634 0.26236 1.09861 0.40547
5958 17 3.42803 0.13081 3.47770 2.82530 17 - -
5959 1.38629 1.38629 1.38629 1.38629
5960 0.03698 4.00896 4.00896 1.46634 0.26236 1.09861 0.40547
5961 18 3.08416 2.59231 3.13249 0.17939 18 - -
5962 1.38629 1.38629 1.38629 1.38629
5963 0.03698 4.00896 4.00896 1.46634 0.26236 1.09861 0.40547
5964 19 2.94445 3.58328 0.11765 3.48749 19 - -
5965 1.38629 1.38629 1.38629 1.38629
5966 0.03698 4.00896 4.00896 1.46634 0.26236 1.09861 0.40547
5967 20 2.94445 3.58328 0.11765 3.48749 20 - -
5968 1.38629 1.38629 1.38629 1.38629
5969 0.03698 4.00896 4.00896 1.46634 0.26236 1.09861 0.40547
5970 21 2.94445 3.58328 0.11765 3.48749 21 - -
5971 1.38629 1.38629 1.38629 1.38629
5972 0.03698 4.00896 4.00896 1.46634 0.26236 1.09861 0.40547
5973 22 0.14248 3.37586 2.79906 3.27710 22 - -
5974 1.38629 1.38629 1.38629 1.38629
5975 0.03698 4.00896 4.00896 1.46634 0.26236 1.09861 0.40547
5976 23 2.94445 3.58328 0.11765 3.48749 23 - -
5977 1.38629 1.38629 1.38629 1.38629
5978 0.03698 4.00896 4.00896 1.46634 0.26236 1.09861 0.40547
5979 24 3.08416 2.59231 3.13249 0.17939 24 - -
5980 1.38629 1.38629 1.38629 1.38629
5981 0.03698 4.00896 4.00896 1.46634 0.26236 1.09861 0.40547
5982 25 0.14248 3.37586 2.79906 3.27710 25 - -
5983 1.38629 1.38629 1.38629 1.38629
5984 0.03698 4.00896 4.00896 1.46634 0.26236 1.09861 0.40547
5985 26 3.08416 2.59231 3.13249 0.17939 26 - -
5986 1.38629 1.38629 1.38629 1.38629
5987 0.03698 4.00896 4.00896 1.46634 0.26236 1.09861 0.40547
5988 27 2.94445 3.58328 0.11765 3.48749 27 - -
5989 1.38629 1.38629 1.38629 1.38629
5990 0.03698 4.00896 4.00896 1.46634 0.26236 1.09861 0.40547
5991 28 3.08416 2.59231 3.13249 0.17939 28 - -
5992 1.38629 1.38629 1.38629 1.38629
5993 0.03698 4.00896 4.00896 1.46634 0.26236 1.09861 0.40547
5994 29 3.08416 2.59231 3.13249 0.17939 29 - -
5995 1.38629 1.38629 1.38629 1.38629
5996 0.03698 4.00896 4.00896 1.46634 0.26236 1.09861 0.40547
5997 30 3.08416 2.59231 3.13249 0.17939 30 - -
5998 1.38629 1.38629 1.38629 1.38629
5999 0.03698 4.00896 4.00896 1.46634 0.26236 1.09861 0.40547
6000 31 2.94445 3.58328 0.11765 3.48749 31 - -
6001 1.38629 1.38629 1.38629 1.38629
6002 0.03698 4.00896 4.00896 1.46634 0.26236 1.09861 0.40547
6003 32 3.08416 2.59231 3.13249 0.17939 32 - -
6004 1.38629 1.38629 1.38629 1.38629
6005 0.03698 4.00896 4.00896 1.46634 0.26236 1.09861 0.40547
6006 33 0.14248 3.37586 2.79906 3.27710 33 - -
6007 1.38629 1.38629 1.38629 1.38629
6008 0.03698 4.00896 4.00896 1.46634 0.26236 1.09861 0.40547
6009 34 3.08416 2.59231 3.13249 0.17939 34 - -
6010 1.38629 1.38629 1.38629 1.38629
6011 0.03698 4.00896 4.00896 1.46634 0.26236 1.09861 0.40547
6012 35 3.42803 0.13081 3.47770 2.82530 35 - -
6013 1.38629 1.38629 1.38629 1.38629
6014 0.03698 4.00896 4.00896 1.46634 0.26236 1.09861 0.40547
6015 36 0.14248 3.37586 2.79906 3.27710 36 - -
6016 1.38629 1.38629 1.38629 1.38629
6017 0.03698 4.00896 4.00896 1.46634 0.26236 1.09861 0.40547
6018 37 2.94445 3.58328 0.11765 3.48749 37 - -
6019 1.38629 1.38629 1.38629 1.38629
6020 0.03698 4.00896 4.00896 1.46634 0.26236 1.09861 0.40547
6021 38 3.08416 2.59231 3.13249 0.17939 38 - -
6022 1.38629 1.38629 1.38629 1.38629
6023 0.03698 4.00896 4.00896 1.46634 0.26236 1.09861 0.40547
6024 39 2.94445 3.58328 0.11765 3.48749 39 - -
6025 1.38629 1.38629 1.38629 1.38629
6026 0.03698 4.00896 4.00896 1.46634 0.26236 1.09861 0.40547
6027 40 3.08416 2.59231 3.13249 0.17939 40 - -
6028 1.38629 1.38629 1.38629 1.38629
6029 0.03698 4.00896 4.00896 1.46634 0.26236 1.09861 0.40547
6030 41 3.42803 0.13081 3.47770 2.82530 41 - -
6031 1.38629 1.38629 1.38629 1.38629
6032 0.03698 4.00896 4.00896 1.46634 0.26236 1.09861 0.40547
6033 42 3.42803 0.13081 3.47770 2.82530 42 - -
6034 1.38629 1.38629 1.38629 1.38629
6035 0.03698 4.00896 4.00896 1.46634 0.26236 1.09861 0.40547
6036 43 2.94445 3.58328 0.11765 3.48749 43 - -
6037 1.38629 1.38629 1.38629 1.38629
6038 0.03698 4.00896 4.00896 1.46634 0.26236 1.09861 0.40547
6039 44 3.08416 2.59231 3.13249 0.17939 44 - -
6040 1.38629 1.38629 1.38629 1.38629
6041 0.03698 4.00896 4.00896 1.46634 0.26236 1.09861 0.40547
6042 45 2.75674 3.49488 0.13627 3.39495 45 - -
6043 1.38629 1.38629 1.38629 1.38629
6044 0.01866 3.99064 * 1.46634 0.26236 0.00000 *
6045 //
6046 HMMER3/b [3.0 | March 2010]
6047 NAME 3_End_Oomycota_58S_end_twelve_long
6048 LENG 45
6049 ALPH DNA
6050 RF no
6051 CS no
6052 MAP yes
6053 DATE Mon Jan 23 23:03:56 2012
6054 NSEQ 26
6055 EFFN 3.322998
6056 CKSUM 3952686333
6057 STATS LOCAL MSV -8.0163 0.71932
6058 STATS LOCAL VITERBI -7.8252 0.71932
6059 STATS LOCAL FORWARD -4.0212 0.71932
6060 HMM A C G T
6061 m->m m->i m->d i->m i->i d->m d->d
6062 COMPO 1.63370 1.38786 1.31856 1.24596
6063 1.38629 1.38629 1.38629 1.38629
6064 0.03688 4.01151 4.01151 1.46634 0.26236 0.00000 *
6065 1 3.43323 0.13019 3.48268 2.82908 1 - -
6066 1.38629 1.38629 1.38629 1.38629
6067 0.03688 4.01151 4.01151 1.46634 0.26236 1.09861 0.40547
6068 2 0.14188 3.38036 2.80199 3.28204 2 - -
6069 1.38629 1.38629 1.38629 1.38629
6070 0.03688 4.01151 4.01151 1.46634 0.26236 1.09861 0.40547
6071 3 3.43323 0.13019 3.48268 2.82908 3 - -
6072 1.38629 1.38629 1.38629 1.38629
6073 0.03688 4.01151 4.01151 1.46634 0.26236 1.09861 0.40547
6074 4 3.08871 2.59521 3.13686 0.17866 4 - -
6075 1.38629 1.38629 1.38629 1.38629
6076 0.03688 4.01151 4.01151 1.46634 0.26236 1.09861 0.40547
6077 5 3.08871 2.59521 3.13686 0.17866 5 - -
6078 1.38629 1.38629 1.38629 1.38629
6079 0.03688 4.01151 4.01151 1.46634 0.26236 1.09861 0.40547
6080 6 3.43323 0.13019 3.48268 2.82908 6 - -
6081 1.38629 1.38629 1.38629 1.38629
6082 0.03688 4.01151 4.01151 1.46634 0.26236 1.09861 0.40547
6083 7 3.43323 0.13019 3.48268 2.82908 7 - -
6084 1.38629 1.38629 1.38629 1.38629
6085 0.03688 4.01151 4.01151 1.46634 0.26236 1.09861 0.40547
6086 8 2.94760 3.58786 0.11715 3.49254 8 - -
6087 1.38629 1.38629 1.38629 1.38629
6088 0.03688 4.01151 4.01151 1.46634 0.26236 1.09861 0.40547
6089 9 2.94760 3.58786 0.11715 3.49254 9 - -
6090 1.38629 1.38629 1.38629 1.38629
6091 0.03688 4.01151 4.01151 1.46634 0.26236 1.09861 0.40547
6092 10 2.94760 3.58786 0.11715 3.49254 10 - -
6093 1.38629 1.38629 1.38629 1.38629
6094 0.03688 4.01151 4.01151 1.46634 0.26236 1.09861 0.40547
6095 11 3.08871 2.59521 3.13686 0.17866 11 - -
6096 1.38629 1.38629 1.38629 1.38629
6097 0.03688 4.01151 4.01151 1.46634 0.26236 1.09861 0.40547
6098 12 3.08871 2.59521 3.13686 0.17866 12 - -
6099 1.38629 1.38629 1.38629 1.38629
6100 0.03688 4.01151 4.01151 1.46634 0.26236 1.09861 0.40547
6101 13 0.14188 3.38036 2.80199 3.28204 13 - -
6102 1.38629 1.38629 1.38629 1.38629
6103 0.03688 4.01151 4.01151 1.46634 0.26236 1.09861 0.40547
6104 14 3.08871 2.59521 3.13686 0.17866 14 - -
6105 1.38629 1.38629 1.38629 1.38629
6106 0.03688 4.01151 4.01151 1.46634 0.26236 1.09861 0.40547
6107 15 2.94760 3.58786 0.11715 3.49254 15 - -
6108 1.38629 1.38629 1.38629 1.38629
6109 0.03688 4.01151 4.01151 1.46634 0.26236 1.09861 0.40547
6110 16 3.43323 0.13019 3.48268 2.82908 16 - -
6111 1.38629 1.38629 1.38629 1.38629
6112 0.03688 4.01151 4.01151 1.46634 0.26236 1.09861 0.40547
6113 17 3.43323 0.13019 3.48268 2.82908 17 - -
6114 1.38629 1.38629 1.38629 1.38629
6115 0.03688 4.01151 4.01151 1.46634 0.26236 1.09861 0.40547
6116 18 3.08871 2.59521 3.13686 0.17866 18 - -
6117 1.38629 1.38629 1.38629 1.38629
6118 0.03688 4.01151 4.01151 1.46634 0.26236 1.09861 0.40547
6119 19 2.94760 3.58786 0.11715 3.49254 19 - -
6120 1.38629 1.38629 1.38629 1.38629
6121 0.03688 4.01151 4.01151 1.46634 0.26236 1.09861 0.40547
6122 20 2.94760 3.58786 0.11715 3.49254 20 - -
6123 1.38629 1.38629 1.38629 1.38629
6124 0.03688 4.01151 4.01151 1.46634 0.26236 1.09861 0.40547
6125 21 0.14188 3.38036 2.80199 3.28204 21 - -
6126 1.38629 1.38629 1.38629 1.38629
6127 0.03688 4.01151 4.01151 1.46634 0.26236 1.09861 0.40547
6128 22 0.14188 3.38036 2.80199 3.28204 22 - -
6129 1.38629 1.38629 1.38629 1.38629
6130 0.03688 4.01151 4.01151 1.46634 0.26236 1.09861 0.40547
6131 23 2.94760 3.58786 0.11715 3.49254 23 - -
6132 1.38629 1.38629 1.38629 1.38629
6133 0.03688 4.01151 4.01151 1.46634 0.26236 1.09861 0.40547
6134 24 3.08871 2.59521 3.13686 0.17866 24 - -
6135 1.38629 1.38629 1.38629 1.38629
6136 0.03688 4.01151 4.01151 1.46634 0.26236 1.09861 0.40547
6137 25 0.14188 3.38036 2.80199 3.28204 25 - -
6138 1.38629 1.38629 1.38629 1.38629
6139 0.03688 4.01151 4.01151 1.46634 0.26236 1.09861 0.40547
6140 26 3.08871 2.59521 3.13686 0.17866 26 - -
6141 1.38629 1.38629 1.38629 1.38629
6142 0.03688 4.01151 4.01151 1.46634 0.26236 1.09861 0.40547
6143 27 2.94760 3.58786 0.11715 3.49254 27 - -
6144 1.38629 1.38629 1.38629 1.38629
6145 0.03688 4.01151 4.01151 1.46634 0.26236 1.09861 0.40547
6146 28 2.98523 0.25393 3.04770 2.06940 28 - -
6147 1.38629 1.38629 1.38629 1.38629
6148 0.03688 4.01151 4.01151 1.46634 0.26236 1.09861 0.40547
6149 29 3.43323 0.13019 3.48268 2.82908 29 - -
6150 1.38629 1.38629 1.38629 1.38629
6151 0.03688 4.01151 4.01151 1.46634 0.26236 1.09861 0.40547
6152 30 3.08871 2.59521 3.13686 0.17866 30 - -
6153 1.38629 1.38629 1.38629 1.38629
6154 0.03688 4.01151 4.01151 1.46634 0.26236 1.09861 0.40547
6155 31 2.94760 3.58786 0.11715 3.49254 31 - -
6156 1.38629 1.38629 1.38629 1.38629
6157 0.03688 4.01151 4.01151 1.46634 0.26236 1.09861 0.40547
6158 32 3.08871 2.59521 3.13686 0.17866 32 - -
6159 1.38629 1.38629 1.38629 1.38629
6160 0.03688 4.01151 4.01151 1.46634 0.26236 1.09861 0.40547
6161 33 0.14188 3.38036 2.80199 3.28204 33 - -
6162 1.38629 1.38629 1.38629 1.38629
6163 0.03688 4.01151 4.01151 1.46634 0.26236 1.09861 0.40547
6164 34 3.08871 2.59521 3.13686 0.17866 34 - -
6165 1.38629 1.38629 1.38629 1.38629
6166 0.03688 4.01151 4.01151 1.46634 0.26236 1.09861 0.40547
6167 35 3.43323 0.13019 3.48268 2.82908 35 - -
6168 1.38629 1.38629 1.38629 1.38629
6169 0.03688 4.01151 4.01151 1.46634 0.26236 1.09861 0.40547
6170 36 0.14188 3.38036 2.80199 3.28204 36 - -
6171 1.38629 1.38629 1.38629 1.38629
6172 0.03688 4.01151 4.01151 1.46634 0.26236 1.09861 0.40547
6173 37 2.94760 3.58786 0.11715 3.49254 37 - -
6174 1.38629 1.38629 1.38629 1.38629
6175 0.03688 4.01151 4.01151 1.46634 0.26236 1.09861 0.40547
6176 38 3.08871 2.59521 3.13686 0.17866 38 - -
6177 1.38629 1.38629 1.38629 1.38629
6178 0.03688 4.01151 4.01151 1.46634 0.26236 1.09861 0.40547
6179 39 2.94760 3.58786 0.11715 3.49254 39 - -
6180 1.38629 1.38629 1.38629 1.38629
6181 0.03688 4.01151 4.01151 1.46634 0.26236 1.09861 0.40547
6182 40 3.08871 2.59521 3.13686 0.17866 40 - -
6183 1.38629 1.38629 1.38629 1.38629
6184 0.03688 4.01151 4.01151 1.46634 0.26236 1.09861 0.40547
6185 41 3.43323 0.13019 3.48268 2.82908 41 - -
6186 1.38629 1.38629 1.38629 1.38629
6187 0.03688 4.01151 4.01151 1.46634 0.26236 1.09861 0.40547
6188 42 3.43323 0.13019 3.48268 2.82908 42 - -
6189 1.38629 1.38629 1.38629 1.38629
6190 0.03688 4.01151 4.01151 1.46634 0.26236 1.09861 0.40547
6191 43 2.94760 3.58786 0.11715 3.49254 43 - -
6192 1.38629 1.38629 1.38629 1.38629
6193 0.03688 4.01151 4.01151 1.46634 0.26236 1.09861 0.40547
6194 44 3.08871 2.59521 3.13686 0.17866 44 - -
6195 1.38629 1.38629 1.38629 1.38629
6196 0.03688 4.01151 4.01151 1.46634 0.26236 1.09861 0.40547
6197 45 0.14188 3.38036 2.80199 3.28204 45 - -
6198 1.38629 1.38629 1.38629 1.38629
6199 0.01861 3.99323 * 1.46634 0.26236 0.00000 *
6200 //
6201 HMMER3/b [3.0 | March 2010]
6202 NAME 3_End_Oomycota_58S_end_twenty_long
6203 LENG 45
6204 ALPH DNA
6205 RF no
6206 CS no
6207 MAP yes
6208 DATE Mon Jan 23 23:05:57 2012
6209 NSEQ 11
6210 EFFN 3.305908
6211 CKSUM 4182302186
6212 STATS LOCAL MSV -8.0713 0.71931
6213 STATS LOCAL VITERBI -7.8599 0.71931
6214 STATS LOCAL FORWARD -4.0666 0.71931
6215 HMM A C G T
6216 m->m m->i m->d i->m i->i d->m d->d
6217 COMPO 1.54970 1.52385 1.31655 1.19813
6218 1.38629 1.38629 1.38629 1.38629
6219 0.03700 4.00841 4.00841 1.46634 0.26236 0.00000 *
6220 1 3.42690 0.13095 3.47662 2.82448 1 - -
6221 1.38629 1.38629 1.38629 1.38629
6222 0.03700 4.00841 4.00841 1.46634 0.26236 1.09861 0.40547
6223 2 0.14261 3.37488 2.79843 3.27603 2 - -
6224 1.38629 1.38629 1.38629 1.38629
6225 0.03700 4.00841 4.00841 1.46634 0.26236 1.09861 0.40547
6226 3 3.42690 0.13095 3.47662 2.82448 3 - -
6227 1.38629 1.38629 1.38629 1.38629
6228 0.03700 4.00841 4.00841 1.46634 0.26236 1.09861 0.40547
6229 4 3.08318 2.59169 3.13154 0.17955 4 - -
6230 1.38629 1.38629 1.38629 1.38629
6231 0.03700 4.00841 4.00841 1.46634 0.26236 1.09861 0.40547
6232 5 3.08318 2.59169 3.13154 0.17955 5 - -
6233 1.38629 1.38629 1.38629 1.38629
6234 0.03700 4.00841 4.00841 1.46634 0.26236 1.09861 0.40547
6235 6 3.08318 2.59169 3.13154 0.17955 6 - -
6236 1.38629 1.38629 1.38629 1.38629
6237 0.03700 4.00841 4.00841 1.46634 0.26236 1.09861 0.40547
6238 7 3.42690 0.13095 3.47662 2.82448 7 - -
6239 1.38629 1.38629 1.38629 1.38629
6240 0.03700 4.00841 4.00841 1.46634 0.26236 1.09861 0.40547
6241 8 2.94377 3.58229 0.11776 3.48639 8 - -
6242 1.38629 1.38629 1.38629 1.38629
6243 0.03700 4.00841 4.00841 1.46634 0.26236 1.09861 0.40547
6244 9 2.94377 3.58229 0.11776 3.48639 9 - -
6245 1.38629 1.38629 1.38629 1.38629
6246 0.03700 4.00841 4.00841 1.46634 0.26236 1.09861 0.40547
6247 10 2.94377 3.58229 0.11776 3.48639 10 - -
6248 1.38629 1.38629 1.38629 1.38629
6249 0.03700 4.00841 4.00841 1.46634 0.26236 1.09861 0.40547
6250 11 3.08318 2.59169 3.13154 0.17955 11 - -
6251 1.38629 1.38629 1.38629 1.38629
6252 0.03700 4.00841 4.00841 1.46634 0.26236 1.09861 0.40547
6253 12 3.08318 2.59169 3.13154 0.17955 12 - -
6254 1.38629 1.38629 1.38629 1.38629
6255 0.03700 4.00841 4.00841 1.46634 0.26236 1.09861 0.40547
6256 13 0.14261 3.37488 2.79843 3.27603 13 - -
6257 1.38629 1.38629 1.38629 1.38629
6258 0.03700 4.00841 4.00841 1.46634 0.26236 1.09861 0.40547
6259 14 2.94377 3.58229 0.11776 3.48639 14 - -
6260 1.38629 1.38629 1.38629 1.38629
6261 0.03700 4.00841 4.00841 1.46634 0.26236 1.09861 0.40547
6262 15 0.14261 3.37488 2.79843 3.27603 15 - -
6263 1.38629 1.38629 1.38629 1.38629
6264 0.03700 4.00841 4.00841 1.46634 0.26236 1.09861 0.40547
6265 16 3.42690 0.13095 3.47662 2.82448 16 - -
6266 1.38629 1.38629 1.38629 1.38629
6267 0.03700 4.00841 4.00841 1.46634 0.26236 1.09861 0.40547
6268 17 3.42690 0.13095 3.47662 2.82448 17 - -
6269 1.38629 1.38629 1.38629 1.38629
6270 0.03700 4.00841 4.00841 1.46634 0.26236 1.09861 0.40547
6271 18 3.08318 2.59169 3.13154 0.17955 18 - -
6272 1.38629 1.38629 1.38629 1.38629
6273 0.03700 4.00841 4.00841 1.46634 0.26236 1.09861 0.40547
6274 19 2.94377 3.58229 0.11776 3.48639 19 - -
6275 1.38629 1.38629 1.38629 1.38629
6276 0.03700 4.00841 4.00841 1.46634 0.26236 1.09861 0.40547
6277 20 2.94377 3.58229 0.11776 3.48639 20 - -
6278 1.38629 1.38629 1.38629 1.38629
6279 0.03700 4.00841 4.00841 1.46634 0.26236 1.09861 0.40547
6280 21 0.14261 3.37488 2.79843 3.27603 21 - -
6281 1.38629 1.38629 1.38629 1.38629
6282 0.03700 4.00841 4.00841 1.46634 0.26236 1.09861 0.40547
6283 22 0.14261 3.37488 2.79843 3.27603 22 - -
6284 1.38629 1.38629 1.38629 1.38629
6285 0.03700 4.00841 4.00841 1.46634 0.26236 1.09861 0.40547
6286 23 2.94377 3.58229 0.11776 3.48639 23 - -
6287 1.38629 1.38629 1.38629 1.38629
6288 0.03700 4.00841 4.00841 1.46634 0.26236 1.09861 0.40547
6289 24 3.08318 2.59169 3.13154 0.17955 24 - -
6290 1.38629 1.38629 1.38629 1.38629
6291 0.03700 4.00841 4.00841 1.46634 0.26236 1.09861 0.40547
6292 25 0.14261 3.37488 2.79843 3.27603 25 - -
6293 1.38629 1.38629 1.38629 1.38629
6294 0.03700 4.00841 4.00841 1.46634 0.26236 1.09861 0.40547
6295 26 3.08318 2.59169 3.13154 0.17955 26 - -
6296 1.38629 1.38629 1.38629 1.38629
6297 0.03700 4.00841 4.00841 1.46634 0.26236 1.09861 0.40547
6298 27 2.94377 3.58229 0.11776 3.48639 27 - -
6299 1.38629 1.38629 1.38629 1.38629
6300 0.03700 4.00841 4.00841 1.46634 0.26236 1.09861 0.40547
6301 28 3.08318 2.59169 3.13154 0.17955 28 - -
6302 1.38629 1.38629 1.38629 1.38629
6303 0.03700 4.00841 4.00841 1.46634 0.26236 1.09861 0.40547
6304 29 3.42690 0.13095 3.47662 2.82448 29 - -
6305 1.38629 1.38629 1.38629 1.38629
6306 0.03700 4.00841 4.00841 1.46634 0.26236 1.09861 0.40547
6307 30 3.08318 2.59169 3.13154 0.17955 30 - -
6308 1.38629 1.38629 1.38629 1.38629
6309 0.03700 4.00841 4.00841 1.46634 0.26236 1.09861 0.40547
6310 31 2.94377 3.58229 0.11776 3.48639 31 - -
6311 1.38629 1.38629 1.38629 1.38629
6312 0.03700 4.00841 4.00841 1.46634 0.26236 1.09861 0.40547
6313 32 3.08318 2.59169 3.13154 0.17955 32 - -
6314 1.38629 1.38629 1.38629 1.38629
6315 0.03700 4.00841 4.00841 1.46634 0.26236 1.09861 0.40547
6316 33 0.14261 3.37488 2.79843 3.27603 33 - -
6317 1.38629 1.38629 1.38629 1.38629
6318 0.03700 4.00841 4.00841 1.46634 0.26236 1.09861 0.40547
6319 34 3.08318 2.59169 3.13154 0.17955 34 - -
6320 1.38629 1.38629 1.38629 1.38629
6321 0.03700 4.00841 4.00841 1.46634 0.26236 1.09861 0.40547
6322 35 3.42690 0.13095 3.47662 2.82448 35 - -
6323 1.38629 1.38629 1.38629 1.38629
6324 0.03700 4.00841 4.00841 1.46634 0.26236 1.09861 0.40547
6325 36 0.14261 3.37488 2.79843 3.27603 36 - -
6326 1.38629 1.38629 1.38629 1.38629
6327 0.03700 4.00841 4.00841 1.46634 0.26236 1.09861 0.40547
6328 37 2.94377 3.58229 0.11776 3.48639 37 - -
6329 1.38629 1.38629 1.38629 1.38629
6330 0.03700 4.00841 4.00841 1.46634 0.26236 1.09861 0.40547
6331 38 3.08318 2.59169 3.13154 0.17955 38 - -
6332 1.38629 1.38629 1.38629 1.38629
6333 0.03700 4.00841 4.00841 1.46634 0.26236 1.09861 0.40547
6334 39 2.94377 3.58229 0.11776 3.48639 39 - -
6335 1.38629 1.38629 1.38629 1.38629
6336 0.03700 4.00841 4.00841 1.46634 0.26236 1.09861 0.40547
6337 40 3.08318 2.59169 3.13154 0.17955 40 - -
6338 1.38629 1.38629 1.38629 1.38629
6339 0.03700 4.00841 4.00841 1.46634 0.26236 1.09861 0.40547
6340 41 3.42690 0.13095 3.47662 2.82448 41 - -
6341 1.38629 1.38629 1.38629 1.38629
6342 0.03700 4.00841 4.00841 1.46634 0.26236 1.09861 0.40547
6343 42 3.42690 0.13095 3.47662 2.82448 42 - -
6344 1.38629 1.38629 1.38629 1.38629
6345 0.03700 4.00841 4.00841 1.46634 0.26236 1.09861 0.40547
6346 43 2.94377 3.58229 0.11776 3.48639 43 - -
6347 1.38629 1.38629 1.38629 1.38629
6348 0.03700 4.00841 4.00841 1.46634 0.26236 1.09861 0.40547
6349 44 3.08318 2.59169 3.13154 0.17955 44 - -
6350 1.38629 1.38629 1.38629 1.38629
6351 0.03700 4.00841 4.00841 1.46634 0.26236 1.09861 0.40547
6352 45 0.14261 3.37488 2.79843 3.27603 45 - -
6353 1.38629 1.38629 1.38629 1.38629
6354 0.01867 3.99008 * 1.46634 0.26236 0.00000 *
6355 //
6356 HMMER3/b [3.0 | March 2010]
6357 NAME 3_End_Oomycota_58S_end_twentyeight_long
6358 LENG 45
6359 ALPH DNA
6360 RF no
6361 CS no
6362 MAP yes
6363 DATE Mon Jan 23 23:07:41 2012
6364 NSEQ 14
6365 EFFN 3.394043
6366 CKSUM 293271894
6367 STATS LOCAL MSV -7.3677 0.71932
6368 STATS LOCAL VITERBI -7.7536 0.71932
6369 STATS LOCAL FORWARD -3.9629 0.71932
6370 HMM A C G T
6371 m->m m->i m->d i->m i->i d->m d->d
6372 COMPO 1.69978 1.37432 1.28686 1.24435
6373 1.38629 1.38629 1.38629 1.38629
6374 0.03641 4.02429 4.02429 1.46634 0.26236 0.00000 *
6375 1 3.45911 0.12715 3.50746 2.84789 1 - -
6376 1.38629 1.38629 1.38629 1.38629
6377 0.03641 4.02429 4.02429 1.46634 0.26236 1.09861 0.40547
6378 2 0.13895 3.40284 2.81657 3.30665 2 - -
6379 1.38629 1.38629 1.38629 1.38629
6380 0.03641 4.02429 4.02429 1.46634 0.26236 1.09861 0.40547
6381 3 3.45911 0.12715 3.50746 2.84789 3 - -
6382 1.38629 1.38629 1.38629 1.38629
6383 0.03641 4.02429 4.02429 1.46634 0.26236 1.09861 0.40547
6384 4 3.11146 2.60966 3.15874 0.17504 4 - -
6385 1.38629 1.38629 1.38629 1.38629
6386 0.03641 4.02429 4.02429 1.46634 0.26236 1.09861 0.40547
6387 5 3.11146 2.60966 3.15874 0.17504 5 - -
6388 1.38629 1.38629 1.38629 1.38629
6389 0.03641 4.02429 4.02429 1.46634 0.26236 1.09861 0.40547
6390 6 3.45911 0.12715 3.50746 2.84789 6 - -
6391 1.38629 1.38629 1.38629 1.38629
6392 0.03641 4.02429 4.02429 1.46634 0.26236 1.09861 0.40547
6393 7 3.45911 0.12715 3.50746 2.84789 7 - -
6394 1.38629 1.38629 1.38629 1.38629
6395 0.03641 4.02429 4.02429 1.46634 0.26236 1.09861 0.40547
6396 8 2.96321 3.61061 0.11469 3.51767 8 - -
6397 1.38629 1.38629 1.38629 1.38629
6398 0.12979 4.02429 2.26489 1.46634 0.26236 1.09861 0.40547
6399 9 2.84680 3.44327 0.13428 3.33352 9 - -
6400 1.38629 1.38629 1.38629 1.38629
6401 0.03990 3.93440 3.93440 1.46634 0.26236 0.29587 1.36212
6402 10 2.96321 3.61061 0.11469 3.51767 10 - -
6403 1.38629 1.38629 1.38629 1.38629
6404 0.03641 4.02429 4.02429 1.46634 0.26236 1.09861 0.40547
6405 11 3.11146 2.60966 3.15874 0.17504 11 - -
6406 1.38629 1.38629 1.38629 1.38629
6407 0.03641 4.02429 4.02429 1.46634 0.26236 1.09861 0.40547
6408 12 3.11146 2.60966 3.15874 0.17504 12 - -
6409 1.38629 1.38629 1.38629 1.38629
6410 0.03641 4.02429 4.02429 1.46634 0.26236 1.09861 0.40547
6411 13 0.13895 3.40284 2.81657 3.30665 13 - -
6412 1.38629 1.38629 1.38629 1.38629
6413 0.03641 4.02429 4.02429 1.46634 0.26236 1.09861 0.40547
6414 14 2.96321 3.61061 0.11469 3.51767 14 - -
6415 1.38629 1.38629 1.38629 1.38629
6416 0.03641 4.02429 4.02429 1.46634 0.26236 1.09861 0.40547
6417 15 3.11146 2.60966 3.15874 0.17504 15 - -
6418 1.38629 1.38629 1.38629 1.38629
6419 0.03641 4.02429 4.02429 1.46634 0.26236 1.09861 0.40547
6420 16 3.45911 0.12715 3.50746 2.84789 16 - -
6421 1.38629 1.38629 1.38629 1.38629
6422 0.03641 4.02429 4.02429 1.46634 0.26236 1.09861 0.40547
6423 17 3.45911 0.12715 3.50746 2.84789 17 - -
6424 1.38629 1.38629 1.38629 1.38629
6425 0.03641 4.02429 4.02429 1.46634 0.26236 1.09861 0.40547
6426 18 3.11146 2.60966 3.15874 0.17504 18 - -
6427 1.38629 1.38629 1.38629 1.38629
6428 0.03641 4.02429 4.02429 1.46634 0.26236 1.09861 0.40547
6429 19 2.96321 3.61061 0.11469 3.51767 19 - -
6430 1.38629 1.38629 1.38629 1.38629
6431 0.03641 4.02429 4.02429 1.46634 0.26236 1.09861 0.40547
6432 20 2.96321 3.61061 0.11469 3.51767 20 - -
6433 1.38629 1.38629 1.38629 1.38629
6434 0.03641 4.02429 4.02429 1.46634 0.26236 1.09861 0.40547
6435 21 1.27629 2.63263 0.56893 2.49000 21 - -
6436 1.38629 1.38629 1.38629 1.38629
6437 0.03641 4.02429 4.02429 1.46634 0.26236 1.09861 0.40547
6438 22 0.13895 3.40284 2.81657 3.30665 22 - -
6439 1.38629 1.38629 1.38629 1.38629
6440 0.03641 4.02429 4.02429 1.46634 0.26236 1.09861 0.40547
6441 23 2.96321 3.61061 0.11469 3.51767 23 - -
6442 1.38629 1.38629 1.38629 1.38629
6443 0.03641 4.02429 4.02429 1.46634 0.26236 1.09861 0.40547
6444 24 3.11146 2.60966 3.15874 0.17504 24 - -
6445 1.38629 1.38629 1.38629 1.38629
6446 0.03641 4.02429 4.02429 1.46634 0.26236 1.09861 0.40547
6447 25 0.13895 3.40284 2.81657 3.30665 25 - -
6448 1.38629 1.38629 1.38629 1.38629
6449 0.03641 4.02429 4.02429 1.46634 0.26236 1.09861 0.40547
6450 26 3.11146 2.60966 3.15874 0.17504 26 - -
6451 1.38629 1.38629 1.38629 1.38629
6452 0.03641 4.02429 4.02429 1.46634 0.26236 1.09861 0.40547
6453 27 2.96321 3.61061 0.11469 3.51767 27 - -
6454 1.38629 1.38629 1.38629 1.38629
6455 0.03641 4.02429 4.02429 1.46634 0.26236 1.09861 0.40547
6456 28 3.45911 0.12715 3.50746 2.84789 28 - -
6457 1.38629 1.38629 1.38629 1.38629
6458 0.03641 4.02429 4.02429 1.46634 0.26236 1.09861 0.40547
6459 29 3.45911 0.12715 3.50746 2.84789 29 - -
6460 1.38629 1.38629 1.38629 1.38629
6461 0.03641 4.02429 4.02429 1.46634 0.26236 1.09861 0.40547
6462 30 3.11146 2.60966 3.15874 0.17504 30 - -
6463 1.38629 1.38629 1.38629 1.38629
6464 0.03641 4.02429 4.02429 1.46634 0.26236 1.09861 0.40547
6465 31 2.96321 3.61061 0.11469 3.51767 31 - -
6466 1.38629 1.38629 1.38629 1.38629
6467 0.03641 4.02429 4.02429 1.46634 0.26236 1.09861 0.40547
6468 32 3.11146 2.60966 3.15874 0.17504 32 - -
6469 1.38629 1.38629 1.38629 1.38629
6470 0.03641 4.02429 4.02429 1.46634 0.26236 1.09861 0.40547
6471 33 0.13895 3.40284 2.81657 3.30665 33 - -
6472 1.38629 1.38629 1.38629 1.38629
6473 0.03641 4.02429 4.02429 1.46634 0.26236 1.09861 0.40547
6474 34 3.11146 2.60966 3.15874 0.17504 34 - -
6475 1.38629 1.38629 1.38629 1.38629
6476 0.03641 4.02429 4.02429 1.46634 0.26236 1.09861 0.40547
6477 35 3.45911 0.12715 3.50746 2.84789 35 - -
6478 1.38629 1.38629 1.38629 1.38629
6479 0.03641 4.02429 4.02429 1.46634 0.26236 1.09861 0.40547
6480 36 0.13895 3.40284 2.81657 3.30665 36 - -
6481 1.38629 1.38629 1.38629 1.38629
6482 0.03641 4.02429 4.02429 1.46634 0.26236 1.09861 0.40547
6483 37 2.96321 3.61061 0.11469 3.51767 37 - -
6484 1.38629 1.38629 1.38629 1.38629
6485 0.03641 4.02429 4.02429 1.46634 0.26236 1.09861 0.40547
6486 38 3.11146 2.60966 3.15874 0.17504 38 - -
6487 1.38629 1.38629 1.38629 1.38629
6488 0.03641 4.02429 4.02429 1.46634 0.26236 1.09861 0.40547
6489 39 2.96321 3.61061 0.11469 3.51767 39 - -
6490 1.38629 1.38629 1.38629 1.38629
6491 0.03641 4.02429 4.02429 1.46634 0.26236 1.09861 0.40547
6492 40 3.11146 2.60966 3.15874 0.17504 40 - -
6493 1.38629 1.38629 1.38629 1.38629
6494 0.03641 4.02429 4.02429 1.46634 0.26236 1.09861 0.40547
6495 41 3.45911 0.12715 3.50746 2.84789 41 - -
6496 1.38629 1.38629 1.38629 1.38629
6497 0.03641 4.02429 4.02429 1.46634 0.26236 1.09861 0.40547
6498 42 3.45911 0.12715 3.50746 2.84789 42 - -
6499 1.38629 1.38629 1.38629 1.38629
6500 0.03641 4.02429 4.02429 1.46634 0.26236 1.09861 0.40547
6501 43 2.96321 3.61061 0.11469 3.51767 43 - -
6502 1.38629 1.38629 1.38629 1.38629
6503 0.03641 4.02429 4.02429 1.46634 0.26236 1.09861 0.40547
6504 44 3.11146 2.60966 3.15874 0.17504 44 - -
6505 1.38629 1.38629 1.38629 1.38629
6506 0.03641 4.02429 4.02429 1.46634 0.26236 1.09861 0.40547
6507 45 0.13895 3.40284 2.81657 3.30665 45 - -
6508 1.38629 1.38629 1.38629 1.38629
6509 0.01837 4.00625 * 1.46634 0.26236 0.00000 *
6510 //
6511 HMMER3/b [3.0 | March 2010]
6512 NAME 3_End_Oomycota_58S_end_twentyfive_long
6513 LENG 45
6514 ALPH DNA
6515 RF no
6516 CS no
6517 MAP yes
6518 DATE Mon Jan 23 23:07:06 2012
6519 NSEQ 75
6520 EFFN 3.364563
6521 CKSUM 324606330
6522 STATS LOCAL MSV -8.1203 0.71931
6523 STATS LOCAL VITERBI -7.8811 0.71931
6524 STATS LOCAL FORWARD -4.0462 0.71931
6525 HMM A C G T
6526 m->m m->i m->d i->m i->i d->m d->d
6527 COMPO 1.55089 1.44302 1.39216 1.19340
6528 1.38629 1.38629 1.38629 1.38629
6529 0.03660 4.01900 4.01900 1.46634 0.26236 0.00000 *
6530 1 3.44845 0.12839 3.49725 2.84015 1 - -
6531 1.38629 1.38629 1.38629 1.38629
6532 0.03660 4.01900 4.01900 1.46634 0.26236 1.09861 0.40547
6533 2 0.14015 3.39358 2.81057 3.29651 2 - -
6534 1.38629 1.38629 1.38629 1.38629
6535 0.03660 4.01900 4.01900 1.46634 0.26236 1.09861 0.40547
6536 3 3.44845 0.12839 3.49725 2.84015 3 - -
6537 1.38629 1.38629 1.38629 1.38629
6538 0.03660 4.01900 4.01900 1.46634 0.26236 1.09861 0.40547
6539 4 3.10207 2.60370 3.14971 0.17652 4 - -
6540 1.38629 1.38629 1.38629 1.38629
6541 0.03660 4.01900 4.01900 1.46634 0.26236 1.09861 0.40547
6542 5 3.10207 2.60370 3.14971 0.17652 5 - -
6543 1.38629 1.38629 1.38629 1.38629
6544 0.03660 4.01900 4.01900 1.46634 0.26236 1.09861 0.40547
6545 6 3.10207 2.60370 3.14971 0.17652 6 - -
6546 1.38629 1.38629 1.38629 1.38629
6547 0.03660 4.01900 4.01900 1.46634 0.26236 1.09861 0.40547
6548 7 3.44845 0.12839 3.49725 2.84015 7 - -
6549 1.38629 1.38629 1.38629 1.38629
6550 0.03660 4.01900 4.01900 1.46634 0.26236 1.09861 0.40547
6551 8 2.95679 3.60125 0.11569 3.50732 8 - -
6552 1.38629 1.38629 1.38629 1.38629
6553 0.03660 4.01900 4.01900 1.46634 0.26236 1.09861 0.40547
6554 9 2.95679 3.60125 0.11569 3.50732 9 - -
6555 1.38629 1.38629 1.38629 1.38629
6556 0.03660 4.01900 4.01900 1.46634 0.26236 1.09861 0.40547
6557 10 2.95679 3.60125 0.11569 3.50732 10 - -
6558 1.38629 1.38629 1.38629 1.38629
6559 0.03660 4.01900 4.01900 1.46634 0.26236 1.09861 0.40547
6560 11 3.10207 2.60370 3.14971 0.17652 11 - -
6561 1.38629 1.38629 1.38629 1.38629
6562 0.03660 4.01900 4.01900 1.46634 0.26236 1.09861 0.40547
6563 12 3.10207 2.60370 3.14971 0.17652 12 - -
6564 1.38629 1.38629 1.38629 1.38629
6565 0.03660 4.01900 4.01900 1.46634 0.26236 1.09861 0.40547
6566 13 0.14015 3.39358 2.81057 3.29651 13 - -
6567 1.38629 1.38629 1.38629 1.38629
6568 0.03660 4.01900 4.01900 1.46634 0.26236 1.09861 0.40547
6569 14 3.10207 2.60370 3.14971 0.17652 14 - -
6570 1.38629 1.38629 1.38629 1.38629
6571 0.03660 4.01900 4.01900 1.46634 0.26236 1.09861 0.40547
6572 15 2.66646 2.59325 0.22085 2.92086 15 - -
6573 1.38629 1.38629 1.38629 1.38629
6574 0.03660 4.01900 4.01900 1.46634 0.26236 1.09861 0.40547
6575 16 3.44845 0.12839 3.49725 2.84015 16 - -
6576 1.38629 1.38629 1.38629 1.38629
6577 0.03660 4.01900 4.01900 1.46634 0.26236 1.09861 0.40547
6578 17 3.44845 0.12839 3.49725 2.84015 17 - -
6579 1.38629 1.38629 1.38629 1.38629
6580 0.03660 4.01900 4.01900 1.46634 0.26236 1.09861 0.40547
6581 18 3.10207 2.60370 3.14971 0.17652 18 - -
6582 1.38629 1.38629 1.38629 1.38629
6583 0.03660 4.01900 4.01900 1.46634 0.26236 1.09861 0.40547
6584 19 2.95679 3.60125 0.11569 3.50732 19 - -
6585 1.38629 1.38629 1.38629 1.38629
6586 0.03660 4.01900 4.01900 1.46634 0.26236 1.09861 0.40547
6587 20 2.95679 3.60125 0.11569 3.50732 20 - -
6588 1.38629 1.38629 1.38629 1.38629
6589 0.03660 4.01900 4.01900 1.46634 0.26236 1.09861 0.40547
6590 21 0.14015 3.39358 2.81057 3.29651 21 - -
6591 1.38629 1.38629 1.38629 1.38629
6592 0.03660 4.01900 4.01900 1.46634 0.26236 1.09861 0.40547
6593 22 0.14015 3.39358 2.81057 3.29651 22 - -
6594 1.38629 1.38629 1.38629 1.38629
6595 0.03660 4.01900 4.01900 1.46634 0.26236 1.09861 0.40547
6596 23 2.95679 3.60125 0.11569 3.50732 23 - -
6597 1.38629 1.38629 1.38629 1.38629
6598 0.03660 4.01900 4.01900 1.46634 0.26236 1.09861 0.40547
6599 24 3.10207 2.60370 3.14971 0.17652 24 - -
6600 1.38629 1.38629 1.38629 1.38629
6601 0.03660 4.01900 4.01900 1.46634 0.26236 1.09861 0.40547
6602 25 0.14015 3.39358 2.81057 3.29651 25 - -
6603 1.38629 1.38629 1.38629 1.38629
6604 0.03660 4.01900 4.01900 1.46634 0.26236 1.09861 0.40547
6605 26 3.10207 2.60370 3.14971 0.17652 26 - -
6606 1.38629 1.38629 1.38629 1.38629
6607 0.03660 4.01900 4.01900 1.46634 0.26236 1.09861 0.40547
6608 27 2.95679 3.60125 0.11569 3.50732 27 - -
6609 1.38629 1.38629 1.38629 1.38629
6610 0.03660 4.01900 4.01900 1.46634 0.26236 1.09861 0.40547
6611 28 3.44845 0.12839 3.49725 2.84015 28 - -
6612 1.38629 1.38629 1.38629 1.38629
6613 0.03660 4.01900 4.01900 1.46634 0.26236 1.09861 0.40547
6614 29 3.44845 0.12839 3.49725 2.84015 29 - -
6615 1.38629 1.38629 1.38629 1.38629
6616 0.03660 4.01900 4.01900 1.46634 0.26236 1.09861 0.40547
6617 30 3.10207 2.60370 3.14971 0.17652 30 - -
6618 1.38629 1.38629 1.38629 1.38629
6619 0.03660 4.01900 4.01900 1.46634 0.26236 1.09861 0.40547
6620 31 2.95679 3.60125 0.11569 3.50732 31 - -
6621 1.38629 1.38629 1.38629 1.38629
6622 0.03660 4.01900 4.01900 1.46634 0.26236 1.09861 0.40547
6623 32 3.10207 2.60370 3.14971 0.17652 32 - -
6624 1.38629 1.38629 1.38629 1.38629
6625 0.03660 4.01900 4.01900 1.46634 0.26236 1.09861 0.40547
6626 33 0.14015 3.39358 2.81057 3.29651 33 - -
6627 1.38629 1.38629 1.38629 1.38629
6628 0.03660 4.01900 4.01900 1.46634 0.26236 1.09861 0.40547
6629 34 3.10207 2.60370 3.14971 0.17652 34 - -
6630 1.38629 1.38629 1.38629 1.38629
6631 0.03660 4.01900 4.01900 1.46634 0.26236 1.09861 0.40547
6632 35 3.44845 0.12839 3.49725 2.84015 35 - -
6633 1.38629 1.38629 1.38629 1.38629
6634 0.03660 4.01900 4.01900 1.46634 0.26236 1.09861 0.40547
6635 36 0.14015 3.39358 2.81057 3.29651 36 - -
6636 1.38629 1.38629 1.38629 1.38629
6637 0.03660 4.01900 4.01900 1.46634 0.26236 1.09861 0.40547
6638 37 2.95679 3.60125 0.11569 3.50732 37 - -
6639 1.38629 1.38629 1.38629 1.38629
6640 0.03660 4.01900 4.01900 1.46634 0.26236 1.09861 0.40547
6641 38 3.10207 2.60370 3.14971 0.17652 38 - -
6642 1.38629 1.38629 1.38629 1.38629
6643 0.03660 4.01900 4.01900 1.46634 0.26236 1.09861 0.40547
6644 39 2.95679 3.60125 0.11569 3.50732 39 - -
6645 1.38629 1.38629 1.38629 1.38629
6646 0.03660 4.01900 4.01900 1.46634 0.26236 1.09861 0.40547
6647 40 3.10207 2.60370 3.14971 0.17652 40 - -
6648 1.38629 1.38629 1.38629 1.38629
6649 0.03660 4.01900 4.01900 1.46634 0.26236 1.09861 0.40547
6650 41 3.44845 0.12839 3.49725 2.84015 41 - -
6651 1.38629 1.38629 1.38629 1.38629
6652 0.03660 4.01900 4.01900 1.46634 0.26236 1.09861 0.40547
6653 42 3.44845 0.12839 3.49725 2.84015 42 - -
6654 1.38629 1.38629 1.38629 1.38629
6655 0.03660 4.01900 4.01900 1.46634 0.26236 1.09861 0.40547
6656 43 0.14015 3.39358 2.81057 3.29651 43 - -
6657 1.38629 1.38629 1.38629 1.38629
6658 0.03660 4.01900 4.01900 1.46634 0.26236 1.09861 0.40547
6659 44 3.10207 2.60370 3.14971 0.17652 44 - -
6660 1.38629 1.38629 1.38629 1.38629
6661 0.03660 4.01900 4.01900 1.46634 0.26236 1.09861 0.40547
6662 45 0.14015 3.39358 2.81057 3.29651 45 - -
6663 1.38629 1.38629 1.38629 1.38629
6664 0.01847 4.00087 * 1.46634 0.26236 0.00000 *
6665 //
6666 HMMER3/b [3.0 | March 2010]
6667 NAME 3_End_Oomycota_58S_end_twentyfour_long
6668 LENG 45
6669 ALPH DNA
6670 RF no
6671 CS no
6672 MAP yes
6673 DATE Mon Jan 23 23:06:56 2012
6674 NSEQ 21
6675 EFFN 3.299194
6676 CKSUM 3016585621
6677 STATS LOCAL MSV -8.1081 0.71931
6678 STATS LOCAL VITERBI -7.7712 0.71931
6679 STATS LOCAL FORWARD -4.2342 0.71931
6680 HMM A C G T
6681 m->m m->i m->d i->m i->i d->m d->d
6682 COMPO 1.63365 1.44741 1.31884 1.19680
6683 1.38629 1.38629 1.38629 1.38629
6684 0.03705 4.00719 4.00719 1.46634 0.26236 0.00000 *
6685 1 3.42441 0.13125 3.47423 2.82266 1 - -
6686 1.38629 1.38629 1.38629 1.38629
6687 0.03705 4.00719 4.00719 1.46634 0.26236 1.09861 0.40547
6688 2 0.14290 3.37271 2.79702 3.27366 2 - -
6689 1.38629 1.38629 1.38629 1.38629
6690 0.03705 4.00719 4.00719 1.46634 0.26236 1.09861 0.40547
6691 3 3.42441 0.13125 3.47423 2.82266 3 - -
6692 1.38629 1.38629 1.38629 1.38629
6693 0.03705 4.00719 4.00719 1.46634 0.26236 1.09861 0.40547
6694 4 3.08100 2.59030 3.12944 0.17991 4 - -
6695 1.38629 1.38629 1.38629 1.38629
6696 0.03705 4.00719 4.00719 1.46634 0.26236 1.09861 0.40547
6697 5 3.08100 2.59030 3.12944 0.17991 5 - -
6698 1.38629 1.38629 1.38629 1.38629
6699 0.03705 4.00719 4.00719 1.46634 0.26236 1.09861 0.40547
6700 6 3.08100 2.59030 3.12944 0.17991 6 - -
6701 1.38629 1.38629 1.38629 1.38629
6702 0.03705 4.00719 4.00719 1.46634 0.26236 1.09861 0.40547
6703 7 3.42441 0.13125 3.47423 2.82266 7 - -
6704 1.38629 1.38629 1.38629 1.38629
6705 0.03705 4.00719 4.00719 1.46634 0.26236 1.09861 0.40547
6706 8 2.94226 3.58009 0.11800 3.48397 8 - -
6707 1.38629 1.38629 1.38629 1.38629
6708 0.03705 4.00719 4.00719 1.46634 0.26236 1.09861 0.40547
6709 9 2.94226 3.58009 0.11800 3.48397 9 - -
6710 1.38629 1.38629 1.38629 1.38629
6711 0.03705 4.00719 4.00719 1.46634 0.26236 1.09861 0.40547
6712 10 2.94226 3.58009 0.11800 3.48397 10 - -
6713 1.38629 1.38629 1.38629 1.38629
6714 0.03705 4.00719 4.00719 1.46634 0.26236 1.09861 0.40547
6715 11 3.08100 2.59030 3.12944 0.17991 11 - -
6716 1.38629 1.38629 1.38629 1.38629
6717 0.03705 4.00719 4.00719 1.46634 0.26236 1.09861 0.40547
6718 12 3.08100 2.59030 3.12944 0.17991 12 - -
6719 1.38629 1.38629 1.38629 1.38629
6720 0.03705 4.00719 4.00719 1.46634 0.26236 1.09861 0.40547
6721 13 0.14290 3.37271 2.79702 3.27366 13 - -
6722 1.38629 1.38629 1.38629 1.38629
6723 0.03705 4.00719 4.00719 1.46634 0.26236 1.09861 0.40547
6724 14 3.42441 0.13125 3.47423 2.82266 14 - -
6725 1.38629 1.38629 1.38629 1.38629
6726 0.03705 4.00719 4.00719 1.46634 0.26236 1.09861 0.40547
6727 15 2.94226 3.58009 0.11800 3.48397 15 - -
6728 1.38629 1.38629 1.38629 1.38629
6729 0.03705 4.00719 4.00719 1.46634 0.26236 1.09861 0.40547
6730 16 3.42441 0.13125 3.47423 2.82266 16 - -
6731 1.38629 1.38629 1.38629 1.38629
6732 0.03705 4.00719 4.00719 1.46634 0.26236 1.09861 0.40547
6733 17 3.42441 0.13125 3.47423 2.82266 17 - -
6734 1.38629 1.38629 1.38629 1.38629
6735 0.03705 4.00719 4.00719 1.46634 0.26236 1.09861 0.40547
6736 18 3.08100 2.59030 3.12944 0.17991 18 - -
6737 1.38629 1.38629 1.38629 1.38629
6738 0.03705 4.00719 4.00719 1.46634 0.26236 1.09861 0.40547
6739 19 2.94226 3.58009 0.11800 3.48397 19 - -
6740 1.38629 1.38629 1.38629 1.38629
6741 0.03705 4.00719 4.00719 1.46634 0.26236 1.09861 0.40547
6742 20 2.94226 3.58009 0.11800 3.48397 20 - -
6743 1.38629 1.38629 1.38629 1.38629
6744 0.03705 4.00719 4.00719 1.46634 0.26236 1.09861 0.40547
6745 21 0.14290 3.37271 2.79702 3.27366 21 - -
6746 1.38629 1.38629 1.38629 1.38629
6747 0.03705 4.00719 4.00719 1.46634 0.26236 1.09861 0.40547
6748 22 0.14290 3.37271 2.79702 3.27366 22 - -
6749 1.38629 1.38629 1.38629 1.38629
6750 0.03705 4.00719 4.00719 1.46634 0.26236 1.09861 0.40547
6751 23 2.94226 3.58009 0.11800 3.48397 23 - -
6752 1.38629 1.38629 1.38629 1.38629
6753 0.03705 4.00719 4.00719 1.46634 0.26236 1.09861 0.40547
6754 24 3.08100 2.59030 3.12944 0.17991 24 - -
6755 1.38629 1.38629 1.38629 1.38629
6756 0.03705 4.00719 4.00719 1.46634 0.26236 1.09861 0.40547
6757 25 0.14290 3.37271 2.79702 3.27366 25 - -
6758 1.38629 1.38629 1.38629 1.38629
6759 0.03705 4.00719 4.00719 1.46634 0.26236 1.09861 0.40547
6760 26 3.08100 2.59030 3.12944 0.17991 26 - -
6761 1.38629 1.38629 1.38629 1.38629
6762 0.03705 4.00719 4.00719 1.46634 0.26236 1.09861 0.40547
6763 27 2.94226 3.58009 0.11800 3.48397 27 - -
6764 1.38629 1.38629 1.38629 1.38629
6765 0.03705 4.00719 4.00719 1.46634 0.26236 1.09861 0.40547
6766 28 3.08100 2.59030 3.12944 0.17991 28 - -
6767 1.38629 1.38629 1.38629 1.38629
6768 0.03705 4.00719 4.00719 1.46634 0.26236 1.09861 0.40547
6769 29 3.42441 0.13125 3.47423 2.82266 29 - -
6770 1.38629 1.38629 1.38629 1.38629
6771 0.03705 4.00719 4.00719 1.46634 0.26236 1.09861 0.40547
6772 30 3.08100 2.59030 3.12944 0.17991 30 - -
6773 1.38629 1.38629 1.38629 1.38629
6774 0.03705 4.00719 4.00719 1.46634 0.26236 1.09861 0.40547
6775 31 2.94226 3.58009 0.11800 3.48397 31 - -
6776 1.38629 1.38629 1.38629 1.38629
6777 0.03705 4.00719 4.00719 1.46634 0.26236 1.09861 0.40547
6778 32 3.08100 2.59030 3.12944 0.17991 32 - -
6779 1.38629 1.38629 1.38629 1.38629
6780 0.03705 4.00719 4.00719 1.46634 0.26236 1.09861 0.40547
6781 33 0.14290 3.37271 2.79702 3.27366 33 - -
6782 1.38629 1.38629 1.38629 1.38629
6783 0.03705 4.00719 4.00719 1.46634 0.26236 1.09861 0.40547
6784 34 3.08100 2.59030 3.12944 0.17991 34 - -
6785 1.38629 1.38629 1.38629 1.38629
6786 0.03705 4.00719 4.00719 1.46634 0.26236 1.09861 0.40547
6787 35 3.42441 0.13125 3.47423 2.82266 35 - -
6788 1.38629 1.38629 1.38629 1.38629
6789 0.03705 4.00719 4.00719 1.46634 0.26236 1.09861 0.40547
6790 36 0.14290 3.37271 2.79702 3.27366 36 - -
6791 1.38629 1.38629 1.38629 1.38629
6792 0.03705 4.00719 4.00719 1.46634 0.26236 1.09861 0.40547
6793 37 2.94226 3.58009 0.11800 3.48397 37 - -
6794 1.38629 1.38629 1.38629 1.38629
6795 0.03705 4.00719 4.00719 1.46634 0.26236 1.09861 0.40547
6796 38 3.08100 2.59030 3.12944 0.17991 38 - -
6797 1.38629 1.38629 1.38629 1.38629
6798 0.03705 4.00719 4.00719 1.46634 0.26236 1.09861 0.40547
6799 39 2.94226 3.58009 0.11800 3.48397 39 - -
6800 1.38629 1.38629 1.38629 1.38629
6801 0.03705 4.00719 4.00719 1.46634 0.26236 1.09861 0.40547
6802 40 3.08100 2.59030 3.12944 0.17991 40 - -
6803 1.38629 1.38629 1.38629 1.38629
6804 0.03705 4.00719 4.00719 1.46634 0.26236 1.09861 0.40547
6805 41 3.42441 0.13125 3.47423 2.82266 41 - -
6806 1.38629 1.38629 1.38629 1.38629
6807 0.03705 4.00719 4.00719 1.46634 0.26236 1.09861 0.40547
6808 42 3.42441 0.13125 3.47423 2.82266 42 - -
6809 1.38629 1.38629 1.38629 1.38629
6810 0.03705 4.00719 4.00719 1.46634 0.26236 1.09861 0.40547
6811 43 2.94226 3.58009 0.11800 3.48397 43 - -
6812 1.38629 1.38629 1.38629 1.38629
6813 0.03705 4.00719 4.00719 1.46634 0.26236 1.09861 0.40547
6814 44 3.08100 2.59030 3.12944 0.17991 44 - -
6815 1.38629 1.38629 1.38629 1.38629
6816 0.03705 4.00719 4.00719 1.46634 0.26236 1.09861 0.40547
6817 45 0.14290 3.37271 2.79702 3.27366 45 - -
6818 1.38629 1.38629 1.38629 1.38629
6819 0.01869 3.98883 * 1.46634 0.26236 0.00000 *
6820 //
6821 HMMER3/b [3.0 | March 2010]
6822 NAME 3_End_Oomycota_58S_end_twentynine_long
6823 LENG 45
6824 ALPH DNA
6825 RF no
6826 CS no
6827 MAP yes
6828 DATE Mon Jan 23 23:07:52 2012
6829 NSEQ 4
6830 EFFN 3.253906
6831 CKSUM 2374311045
6832 STATS LOCAL MSV -8.1024 0.71931
6833 STATS LOCAL VITERBI -7.7728 0.71931
6834 STATS LOCAL FORWARD -4.2920 0.71931
6835 HMM A C G T
6836 m->m m->i m->d i->m i->i d->m d->d
6837 COMPO 1.63428 1.31762 1.32060 1.30874
6838 1.38629 1.38629 1.38629 1.38629
6839 0.03736 3.99892 3.99892 1.46634 0.26236 0.00000 *
6840 1 0.14487 3.35799 2.78743 3.25755 1 - -
6841 1.38629 1.38629 1.38629 1.38629
6842 0.03736 3.99892 3.99892 1.46634 0.26236 1.09861 0.40547
6843 2 3.40742 0.13331 3.45796 2.81026 2 - -
6844 1.38629 1.38629 1.38629 1.38629
6845 0.03736 3.99892 3.99892 1.46634 0.26236 1.09861 0.40547
6846 3 3.06618 2.58087 3.11519 0.18233 3 - -
6847 1.38629 1.38629 1.38629 1.38629
6848 0.03736 3.99892 3.99892 1.46634 0.26236 1.09861 0.40547
6849 4 3.40742 0.13331 3.45796 2.81026 4 - -
6850 1.38629 1.38629 1.38629 1.38629
6851 0.03736 3.99892 3.99892 1.46634 0.26236 1.09861 0.40547
6852 5 3.40742 0.13331 3.45796 2.81026 5 - -
6853 1.38629 1.38629 1.38629 1.38629
6854 0.03736 3.99892 3.99892 1.46634 0.26236 1.09861 0.40547
6855 6 3.06618 2.58087 3.11519 0.18233 6 - -
6856 1.38629 1.38629 1.38629 1.38629
6857 0.03736 3.99892 3.99892 1.46634 0.26236 1.09861 0.40547
6858 7 2.93193 3.56511 0.11967 3.46744 7 - -
6859 1.38629 1.38629 1.38629 1.38629
6860 0.03736 3.99892 3.99892 1.46634 0.26236 1.09861 0.40547
6861 8 2.93193 3.56511 0.11967 3.46744 8 - -
6862 1.38629 1.38629 1.38629 1.38629
6863 0.03736 3.99892 3.99892 1.46634 0.26236 1.09861 0.40547
6864 9 2.93193 3.56511 0.11967 3.46744 9 - -
6865 1.38629 1.38629 1.38629 1.38629
6866 0.03736 3.99892 3.99892 1.46634 0.26236 1.09861 0.40547
6867 10 3.06618 2.58087 3.11519 0.18233 10 - -
6868 1.38629 1.38629 1.38629 1.38629
6869 0.03736 3.99892 3.99892 1.46634 0.26236 1.09861 0.40547
6870 11 3.06618 2.58087 3.11519 0.18233 11 - -
6871 1.38629 1.38629 1.38629 1.38629
6872 0.03736 3.99892 3.99892 1.46634 0.26236 1.09861 0.40547
6873 12 3.40742 0.13331 3.45796 2.81026 12 - -
6874 1.38629 1.38629 1.38629 1.38629
6875 0.03736 3.99892 3.99892 1.46634 0.26236 1.09861 0.40547
6876 13 0.14487 3.35799 2.78743 3.25755 13 - -
6877 1.38629 1.38629 1.38629 1.38629
6878 0.03736 3.99892 3.99892 1.46634 0.26236 1.09861 0.40547
6879 14 2.93193 3.56511 0.11967 3.46744 14 - -
6880 1.38629 1.38629 1.38629 1.38629
6881 0.03736 3.99892 3.99892 1.46634 0.26236 1.09861 0.40547
6882 15 3.40742 0.13331 3.45796 2.81026 15 - -
6883 1.38629 1.38629 1.38629 1.38629
6884 0.03736 3.99892 3.99892 1.46634 0.26236 1.09861 0.40547
6885 16 3.40742 0.13331 3.45796 2.81026 16 - -
6886 1.38629 1.38629 1.38629 1.38629
6887 0.03736 3.99892 3.99892 1.46634 0.26236 1.09861 0.40547
6888 17 3.06618 2.58087 3.11519 0.18233 17 - -
6889 1.38629 1.38629 1.38629 1.38629
6890 0.03736 3.99892 3.99892 1.46634 0.26236 1.09861 0.40547
6891 18 3.40742 0.13331 3.45796 2.81026 18 - -
6892 1.38629 1.38629 1.38629 1.38629
6893 0.03736 3.99892 3.99892 1.46634 0.26236 1.09861 0.40547
6894 19 0.14487 3.35799 2.78743 3.25755 19 - -
6895 1.38629 1.38629 1.38629 1.38629
6896 0.03736 3.99892 3.99892 1.46634 0.26236 1.09861 0.40547
6897 20 2.93193 3.56511 0.11967 3.46744 20 - -
6898 1.38629 1.38629 1.38629 1.38629
6899 0.03736 3.99892 3.99892 1.46634 0.26236 1.09861 0.40547
6900 21 2.93193 3.56511 0.11967 3.46744 21 - -
6901 1.38629 1.38629 1.38629 1.38629
6902 0.03736 3.99892 3.99892 1.46634 0.26236 1.09861 0.40547
6903 22 0.14487 3.35799 2.78743 3.25755 22 - -
6904 1.38629 1.38629 1.38629 1.38629
6905 0.03736 3.99892 3.99892 1.46634 0.26236 1.09861 0.40547
6906 23 2.93193 3.56511 0.11967 3.46744 23 - -
6907 1.38629 1.38629 1.38629 1.38629
6908 0.03736 3.99892 3.99892 1.46634 0.26236 1.09861 0.40547
6909 24 3.06618 2.58087 3.11519 0.18233 24 - -
6910 1.38629 1.38629 1.38629 1.38629
6911 0.03736 3.99892 3.99892 1.46634 0.26236 1.09861 0.40547
6912 25 0.14487 3.35799 2.78743 3.25755 25 - -
6913 1.38629 1.38629 1.38629 1.38629
6914 0.03736 3.99892 3.99892 1.46634 0.26236 1.09861 0.40547
6915 26 3.06618 2.58087 3.11519 0.18233 26 - -
6916 1.38629 1.38629 1.38629 1.38629
6917 0.03736 3.99892 3.99892 1.46634 0.26236 1.09861 0.40547
6918 27 2.93193 3.56511 0.11967 3.46744 27 - -
6919 1.38629 1.38629 1.38629 1.38629
6920 0.03736 3.99892 3.99892 1.46634 0.26236 1.09861 0.40547
6921 28 3.40742 0.13331 3.45796 2.81026 28 - -
6922 1.38629 1.38629 1.38629 1.38629
6923 0.03736 3.99892 3.99892 1.46634 0.26236 1.09861 0.40547
6924 29 3.40742 0.13331 3.45796 2.81026 29 - -
6925 1.38629 1.38629 1.38629 1.38629
6926 0.03736 3.99892 3.99892 1.46634 0.26236 1.09861 0.40547
6927 30 3.06618 2.58087 3.11519 0.18233 30 - -
6928 1.38629 1.38629 1.38629 1.38629
6929 0.03736 3.99892 3.99892 1.46634 0.26236 1.09861 0.40547
6930 31 2.93193 3.56511 0.11967 3.46744 31 - -
6931 1.38629 1.38629 1.38629 1.38629
6932 0.03736 3.99892 3.99892 1.46634 0.26236 1.09861 0.40547
6933 32 3.06618 2.58087 3.11519 0.18233 32 - -
6934 1.38629 1.38629 1.38629 1.38629
6935 0.03736 3.99892 3.99892 1.46634 0.26236 1.09861 0.40547
6936 33 0.14487 3.35799 2.78743 3.25755 33 - -
6937 1.38629 1.38629 1.38629 1.38629
6938 0.03736 3.99892 3.99892 1.46634 0.26236 1.09861 0.40547
6939 34 3.06618 2.58087 3.11519 0.18233 34 - -
6940 1.38629 1.38629 1.38629 1.38629
6941 0.03736 3.99892 3.99892 1.46634 0.26236 1.09861 0.40547
6942 35 3.40742 0.13331 3.45796 2.81026 35 - -
6943 1.38629 1.38629 1.38629 1.38629
6944 0.03736 3.99892 3.99892 1.46634 0.26236 1.09861 0.40547
6945 36 0.14487 3.35799 2.78743 3.25755 36 - -
6946 1.38629 1.38629 1.38629 1.38629
6947 0.03736 3.99892 3.99892 1.46634 0.26236 1.09861 0.40547
6948 37 2.93193 3.56511 0.11967 3.46744 37 - -
6949 1.38629 1.38629 1.38629 1.38629
6950 0.03736 3.99892 3.99892 1.46634 0.26236 1.09861 0.40547
6951 38 3.06618 2.58087 3.11519 0.18233 38 - -
6952 1.38629 1.38629 1.38629 1.38629
6953 0.03736 3.99892 3.99892 1.46634 0.26236 1.09861 0.40547
6954 39 2.93193 3.56511 0.11967 3.46744 39 - -
6955 1.38629 1.38629 1.38629 1.38629
6956 0.03736 3.99892 3.99892 1.46634 0.26236 1.09861 0.40547
6957 40 3.06618 2.58087 3.11519 0.18233 40 - -
6958 1.38629 1.38629 1.38629 1.38629
6959 0.03736 3.99892 3.99892 1.46634 0.26236 1.09861 0.40547
6960 41 3.40742 0.13331 3.45796 2.81026 41 - -
6961 1.38629 1.38629 1.38629 1.38629
6962 0.03736 3.99892 3.99892 1.46634 0.26236 1.09861 0.40547
6963 42 3.40742 0.13331 3.45796 2.81026 42 - -
6964 1.38629 1.38629 1.38629 1.38629
6965 0.03736 3.99892 3.99892 1.46634 0.26236 1.09861 0.40547
6966 43 2.93193 3.56511 0.11967 3.46744 43 - -
6967 1.38629 1.38629 1.38629 1.38629
6968 0.03736 3.99892 3.99892 1.46634 0.26236 1.09861 0.40547
6969 44 3.06618 2.58087 3.11519 0.18233 44 - -
6970 1.38629 1.38629 1.38629 1.38629
6971 0.03736 3.99892 3.99892 1.46634 0.26236 1.09861 0.40547
6972 45 0.14487 3.35799 2.78743 3.25755 45 - -
6973 1.38629 1.38629 1.38629 1.38629
6974 0.01885 3.98041 * 1.46634 0.26236 0.00000 *
6975 //
6976 HMMER3/b [3.0 | March 2010]
6977 NAME 3_End_Oomycota_58S_end_twentyone_long
6978 LENG 45
6979 ALPH DNA
6980 RF no
6981 CS no
6982 MAP yes
6983 DATE Mon Jan 23 23:06:07 2012
6984 NSEQ 7
6985 EFFN 3.298340
6986 CKSUM 246655704
6987 STATS LOCAL MSV -8.1183 0.71932
6988 STATS LOCAL VITERBI -7.9257 0.71932
6989 STATS LOCAL FORWARD -4.0205 0.71932
6990 HMM A C G T
6991 m->m m->i m->d i->m i->i d->m d->d
6992 COMPO 1.63363 1.44741 1.31884 1.19681
6993 1.38629 1.38629 1.38629 1.38629
6994 0.03705 4.00703 4.00703 1.46634 0.26236 0.00000 *
6995 1 3.42409 0.13129 3.47393 2.82243 1 - -
6996 1.38629 1.38629 1.38629 1.38629
6997 0.03705 4.00703 4.00703 1.46634 0.26236 1.09861 0.40547
6998 2 0.14293 3.37244 2.79684 3.27336 2 - -
6999 1.38629 1.38629 1.38629 1.38629
7000 0.03705 4.00703 4.00703 1.46634 0.26236 1.09861 0.40547
7001 3 3.42409 0.13129 3.47393 2.82243 3 - -
7002 1.38629 1.38629 1.38629 1.38629
7003 0.03705 4.00703 4.00703 1.46634 0.26236 1.09861 0.40547
7004 4 3.08072 2.59012 3.12917 0.17995 4 - -
7005 1.38629 1.38629 1.38629 1.38629
7006 0.03705 4.00703 4.00703 1.46634 0.26236 1.09861 0.40547
7007 5 3.08072 2.59012 3.12917 0.17995 5 - -
7008 1.38629 1.38629 1.38629 1.38629
7009 0.03705 4.00703 4.00703 1.46634 0.26236 1.09861 0.40547
7010 6 3.08072 2.59012 3.12917 0.17995 6 - -
7011 1.38629 1.38629 1.38629 1.38629
7012 0.03705 4.00703 4.00703 1.46634 0.26236 1.09861 0.40547
7013 7 3.42409 0.13129 3.47393 2.82243 7 - -
7014 1.38629 1.38629 1.38629 1.38629
7015 0.03705 4.00703 4.00703 1.46634 0.26236 1.09861 0.40547
7016 8 2.94206 3.57981 0.11803 3.48366 8 - -
7017 1.38629 1.38629 1.38629 1.38629
7018 0.03705 4.00703 4.00703 1.46634 0.26236 1.09861 0.40547
7019 9 2.94206 3.57981 0.11803 3.48366 9 - -
7020 1.38629 1.38629 1.38629 1.38629
7021 0.03705 4.00703 4.00703 1.46634 0.26236 1.09861 0.40547
7022 10 2.94206 3.57981 0.11803 3.48366 10 - -
7023 1.38629 1.38629 1.38629 1.38629
7024 0.03705 4.00703 4.00703 1.46634 0.26236 1.09861 0.40547
7025 11 3.08072 2.59012 3.12917 0.17995 11 - -
7026 1.38629 1.38629 1.38629 1.38629
7027 0.03705 4.00703 4.00703 1.46634 0.26236 1.09861 0.40547
7028 12 3.08072 2.59012 3.12917 0.17995 12 - -
7029 1.38629 1.38629 1.38629 1.38629
7030 0.03705 4.00703 4.00703 1.46634 0.26236 1.09861 0.40547
7031 13 0.14293 3.37244 2.79684 3.27336 13 - -
7032 1.38629 1.38629 1.38629 1.38629
7033 0.03705 4.00703 4.00703 1.46634 0.26236 1.09861 0.40547
7034 14 3.08072 2.59012 3.12917 0.17995 14 - -
7035 1.38629 1.38629 1.38629 1.38629
7036 0.03705 4.00703 4.00703 1.46634 0.26236 1.09861 0.40547
7037 15 2.94206 3.57981 0.11803 3.48366 15 - -
7038 1.38629 1.38629 1.38629 1.38629
7039 0.03705 4.00703 4.00703 1.46634 0.26236 1.09861 0.40547
7040 16 3.42409 0.13129 3.47393 2.82243 16 - -
7041 1.38629 1.38629 1.38629 1.38629
7042 0.03705 4.00703 4.00703 1.46634 0.26236 1.09861 0.40547
7043 17 3.42409 0.13129 3.47393 2.82243 17 - -
7044 1.38629 1.38629 1.38629 1.38629
7045 0.03705 4.00703 4.00703 1.46634 0.26236 1.09861 0.40547
7046 18 3.08072 2.59012 3.12917 0.17995 18 - -
7047 1.38629 1.38629 1.38629 1.38629
7048 0.03705 4.00703 4.00703 1.46634 0.26236 1.09861 0.40547
7049 19 2.94206 3.57981 0.11803 3.48366 19 - -
7050 1.38629 1.38629 1.38629 1.38629
7051 0.03705 4.00703 4.00703 1.46634 0.26236 1.09861 0.40547
7052 20 2.94206 3.57981 0.11803 3.48366 20 - -
7053 1.38629 1.38629 1.38629 1.38629
7054 0.03705 4.00703 4.00703 1.46634 0.26236 1.09861 0.40547
7055 21 0.14293 3.37244 2.79684 3.27336 21 - -
7056 1.38629 1.38629 1.38629 1.38629
7057 0.03705 4.00703 4.00703 1.46634 0.26236 1.09861 0.40547
7058 22 0.14293 3.37244 2.79684 3.27336 22 - -
7059 1.38629 1.38629 1.38629 1.38629
7060 0.03705 4.00703 4.00703 1.46634 0.26236 1.09861 0.40547
7061 23 2.94206 3.57981 0.11803 3.48366 23 - -
7062 1.38629 1.38629 1.38629 1.38629
7063 0.03705 4.00703 4.00703 1.46634 0.26236 1.09861 0.40547
7064 24 3.08072 2.59012 3.12917 0.17995 24 - -
7065 1.38629 1.38629 1.38629 1.38629
7066 0.03705 4.00703 4.00703 1.46634 0.26236 1.09861 0.40547
7067 25 0.14293 3.37244 2.79684 3.27336 25 - -
7068 1.38629 1.38629 1.38629 1.38629
7069 0.03705 4.00703 4.00703 1.46634 0.26236 1.09861 0.40547
7070 26 3.08072 2.59012 3.12917 0.17995 26 - -
7071 1.38629 1.38629 1.38629 1.38629
7072 0.03705 4.00703 4.00703 1.46634 0.26236 1.09861 0.40547
7073 27 2.94206 3.57981 0.11803 3.48366 27 - -
7074 1.38629 1.38629 1.38629 1.38629
7075 0.03705 4.00703 4.00703 1.46634 0.26236 1.09861 0.40547
7076 28 3.42409 0.13129 3.47393 2.82243 28 - -
7077 1.38629 1.38629 1.38629 1.38629
7078 0.03705 4.00703 4.00703 1.46634 0.26236 1.09861 0.40547
7079 29 3.42409 0.13129 3.47393 2.82243 29 - -
7080 1.38629 1.38629 1.38629 1.38629
7081 0.03705 4.00703 4.00703 1.46634 0.26236 1.09861 0.40547
7082 30 3.08072 2.59012 3.12917 0.17995 30 - -
7083 1.38629 1.38629 1.38629 1.38629
7084 0.03705 4.00703 4.00703 1.46634 0.26236 1.09861 0.40547
7085 31 2.94206 3.57981 0.11803 3.48366 31 - -
7086 1.38629 1.38629 1.38629 1.38629
7087 0.03705 4.00703 4.00703 1.46634 0.26236 1.09861 0.40547
7088 32 3.08072 2.59012 3.12917 0.17995 32 - -
7089 1.38629 1.38629 1.38629 1.38629
7090 0.03705 4.00703 4.00703 1.46634 0.26236 1.09861 0.40547
7091 33 0.14293 3.37244 2.79684 3.27336 33 - -
7092 1.38629 1.38629 1.38629 1.38629
7093 0.03705 4.00703 4.00703 1.46634 0.26236 1.09861 0.40547
7094 34 3.08072 2.59012 3.12917 0.17995 34 - -
7095 1.38629 1.38629 1.38629 1.38629
7096 0.03705 4.00703 4.00703 1.46634 0.26236 1.09861 0.40547
7097 35 3.42409 0.13129 3.47393 2.82243 35 - -
7098 1.38629 1.38629 1.38629 1.38629
7099 0.03705 4.00703 4.00703 1.46634 0.26236 1.09861 0.40547
7100 36 0.14293 3.37244 2.79684 3.27336 36 - -
7101 1.38629 1.38629 1.38629 1.38629
7102 0.03705 4.00703 4.00703 1.46634 0.26236 1.09861 0.40547
7103 37 2.94206 3.57981 0.11803 3.48366 37 - -
7104 1.38629 1.38629 1.38629 1.38629
7105 0.03705 4.00703 4.00703 1.46634 0.26236 1.09861 0.40547
7106 38 3.08072 2.59012 3.12917 0.17995 38 - -
7107 1.38629 1.38629 1.38629 1.38629
7108 0.03705 4.00703 4.00703 1.46634 0.26236 1.09861 0.40547
7109 39 2.94206 3.57981 0.11803 3.48366 39 - -
7110 1.38629 1.38629 1.38629 1.38629
7111 0.03705 4.00703 4.00703 1.46634 0.26236 1.09861 0.40547
7112 40 3.08072 2.59012 3.12917 0.17995 40 - -
7113 1.38629 1.38629 1.38629 1.38629
7114 0.03705 4.00703 4.00703 1.46634 0.26236 1.09861 0.40547
7115 41 3.42409 0.13129 3.47393 2.82243 41 - -
7116 1.38629 1.38629 1.38629 1.38629
7117 0.03705 4.00703 4.00703 1.46634 0.26236 1.09861 0.40547
7118 42 3.42409 0.13129 3.47393 2.82243 42 - -
7119 1.38629 1.38629 1.38629 1.38629
7120 0.03705 4.00703 4.00703 1.46634 0.26236 1.09861 0.40547
7121 43 2.94206 3.57981 0.11803 3.48366 43 - -
7122 1.38629 1.38629 1.38629 1.38629
7123 0.03705 4.00703 4.00703 1.46634 0.26236 1.09861 0.40547
7124 44 3.08072 2.59012 3.12917 0.17995 44 - -
7125 1.38629 1.38629 1.38629 1.38629
7126 0.03705 4.00703 4.00703 1.46634 0.26236 1.09861 0.40547
7127 45 0.14293 3.37244 2.79684 3.27336 45 - -
7128 1.38629 1.38629 1.38629 1.38629
7129 0.01870 3.98868 * 1.46634 0.26236 0.00000 *
7130 //
7131 HMMER3/b [3.0 | March 2010]
7132 NAME 3_End_Oomycota_58S_end_twentyseven_long
7133 LENG 45
7134 ALPH DNA
7135 RF no
7136 CS no
7137 MAP yes
7138 DATE Mon Jan 23 23:07:27 2012
7139 NSEQ 90
7140 EFFN 3.331604
7141 CKSUM 115872449
7142 STATS LOCAL MSV -8.0842 0.71933
7143 STATS LOCAL VITERBI -7.7337 0.71933
7144 STATS LOCAL FORWARD -3.8434 0.71933
7145 HMM A C G T
7146 m->m m->i m->d i->m i->i d->m d->d
7147 COMPO 1.55075 1.51971 1.38361 1.14425
7148 1.38629 1.38629 1.38629 1.38629
7149 0.03683 4.01306 4.01306 1.46634 0.26236 0.00000 *
7150 1 3.43640 0.12982 3.48571 2.83139 1 - -
7151 1.38629 1.38629 1.38629 1.38629
7152 0.03683 4.01306 4.01306 1.46634 0.26236 1.09861 0.40547
7153 2 0.14152 3.38312 2.80378 3.28505 2 - -
7154 1.38629 1.38629 1.38629 1.38629
7155 0.03683 4.01306 4.01306 1.46634 0.26236 1.09861 0.40547
7156 3 3.43640 0.12982 3.48571 2.83139 3 - -
7157 1.38629 1.38629 1.38629 1.38629
7158 0.03683 4.01306 4.01306 1.46634 0.26236 1.09861 0.40547
7159 4 3.09149 2.59697 3.13953 0.17821 4 - -
7160 1.38629 1.38629 1.38629 1.38629
7161 0.03683 4.01306 4.01306 1.46634 0.26236 1.09861 0.40547
7162 5 3.09149 2.59697 3.13953 0.17821 5 - -
7163 1.38629 1.38629 1.38629 1.38629
7164 0.03683 4.01306 4.01306 1.46634 0.26236 1.09861 0.40547
7165 6 3.09149 2.59697 3.13953 0.17821 6 - -
7166 1.38629 1.38629 1.38629 1.38629
7167 0.03683 4.01306 4.01306 1.46634 0.26236 1.09861 0.40547
7168 7 3.43640 0.12982 3.48571 2.83139 7 - -
7169 1.38629 1.38629 1.38629 1.38629
7170 0.03683 4.01306 4.01306 1.46634 0.26236 1.09861 0.40547
7171 8 2.94952 3.59065 0.11684 3.49562 8 - -
7172 1.38629 1.38629 1.38629 1.38629
7173 0.03683 4.01306 4.01306 1.46634 0.26236 1.09861 0.40547
7174 9 2.94952 3.59065 0.11684 3.49562 9 - -
7175 1.38629 1.38629 1.38629 1.38629
7176 0.03683 4.01306 4.01306 1.46634 0.26236 1.09861 0.40547
7177 10 2.94952 3.59065 0.11684 3.49562 10 - -
7178 1.38629 1.38629 1.38629 1.38629
7179 0.03683 4.01306 4.01306 1.46634 0.26236 1.09861 0.40547
7180 11 0.14152 3.38312 2.80378 3.28505 11 - -
7181 1.38629 1.38629 1.38629 1.38629
7182 0.03683 4.01306 4.01306 1.46634 0.26236 1.09861 0.40547
7183 12 3.09149 2.59697 3.13953 0.17821 12 - -
7184 1.38629 1.38629 1.38629 1.38629
7185 0.03683 4.01306 4.01306 1.46634 0.26236 1.09861 0.40547
7186 13 0.14152 3.38312 2.80378 3.28505 13 - -
7187 1.38629 1.38629 1.38629 1.38629
7188 0.03683 4.01306 4.01306 1.46634 0.26236 1.09861 0.40547
7189 14 3.09149 2.59697 3.13953 0.17821 14 - -
7190 1.38629 1.38629 1.38629 1.38629
7191 0.03683 4.01306 4.01306 1.46634 0.26236 1.09861 0.40547
7192 15 3.09149 2.59697 3.13953 0.17821 15 - -
7193 1.38629 1.38629 1.38629 1.38629
7194 0.03683 4.01306 4.01306 1.46634 0.26236 1.09861 0.40547
7195 16 3.43640 0.12982 3.48571 2.83139 16 - -
7196 1.38629 1.38629 1.38629 1.38629
7197 0.03683 4.01306 4.01306 1.46634 0.26236 1.09861 0.40547
7198 17 3.43640 0.12982 3.48571 2.83139 17 - -
7199 1.38629 1.38629 1.38629 1.38629
7200 0.03683 4.01306 4.01306 1.46634 0.26236 1.09861 0.40547
7201 18 3.09149 2.59697 3.13953 0.17821 18 - -
7202 1.38629 1.38629 1.38629 1.38629
7203 0.03683 4.01306 4.01306 1.46634 0.26236 1.09861 0.40547
7204 19 2.94952 3.59065 0.11684 3.49562 19 - -
7205 1.38629 1.38629 1.38629 1.38629
7206 0.03683 4.01306 4.01306 1.46634 0.26236 1.09861 0.40547
7207 20 2.94952 3.59065 0.11684 3.49562 20 - -
7208 1.38629 1.38629 1.38629 1.38629
7209 0.03683 4.01306 4.01306 1.46634 0.26236 1.09861 0.40547
7210 21 0.14152 3.38312 2.80378 3.28505 21 - -
7211 1.38629 1.38629 1.38629 1.38629
7212 0.03683 4.01306 4.01306 1.46634 0.26236 1.09861 0.40547
7213 22 0.14152 3.38312 2.80378 3.28505 22 - -
7214 1.38629 1.38629 1.38629 1.38629
7215 0.03683 4.01306 4.01306 1.46634 0.26236 1.09861 0.40547
7216 23 2.94952 3.59065 0.11684 3.49562 23 - -
7217 1.38629 1.38629 1.38629 1.38629
7218 0.03683 4.01306 4.01306 1.46634 0.26236 1.09861 0.40547
7219 24 3.09149 2.59697 3.13953 0.17821 24 - -
7220 1.38629 1.38629 1.38629 1.38629
7221 0.03683 4.01306 4.01306 1.46634 0.26236 1.09861 0.40547
7222 25 0.14152 3.38312 2.80378 3.28505 25 - -
7223 1.38629 1.38629 1.38629 1.38629
7224 0.03683 4.01306 4.01306 1.46634 0.26236 1.09861 0.40547
7225 26 3.09149 2.59697 3.13953 0.17821 26 - -
7226 1.38629 1.38629 1.38629 1.38629
7227 0.03683 4.01306 4.01306 1.46634 0.26236 1.09861 0.40547
7228 27 2.94952 3.59065 0.11684 3.49562 27 - -
7229 1.38629 1.38629 1.38629 1.38629
7230 0.03683 4.01306 4.01306 1.46634 0.26236 1.09861 0.40547
7231 28 3.43640 0.12982 3.48571 2.83139 28 - -
7232 1.38629 1.38629 1.38629 1.38629
7233 0.03683 4.01306 4.01306 1.46634 0.26236 1.09861 0.40547
7234 29 3.09149 2.59697 3.13953 0.17821 29 - -
7235 1.38629 1.38629 1.38629 1.38629
7236 0.03683 4.01306 4.01306 1.46634 0.26236 1.09861 0.40547
7237 30 3.09149 2.59697 3.13953 0.17821 30 - -
7238 1.38629 1.38629 1.38629 1.38629
7239 0.03683 4.01306 4.01306 1.46634 0.26236 1.09861 0.40547
7240 31 2.94952 3.59065 0.11684 3.49562 31 - -
7241 1.38629 1.38629 1.38629 1.38629
7242 0.03683 4.01306 4.01306 1.46634 0.26236 1.09861 0.40547
7243 32 3.09149 2.59697 3.13953 0.17821 32 - -
7244 1.38629 1.38629 1.38629 1.38629
7245 0.03683 4.01306 4.01306 1.46634 0.26236 1.09861 0.40547
7246 33 0.14152 3.38312 2.80378 3.28505 33 - -
7247 1.38629 1.38629 1.38629 1.38629
7248 0.03683 4.01306 4.01306 1.46634 0.26236 1.09861 0.40547
7249 34 3.09149 2.59697 3.13953 0.17821 34 - -
7250 1.38629 1.38629 1.38629 1.38629
7251 0.03683 4.01306 4.01306 1.46634 0.26236 1.09861 0.40547
7252 35 3.43640 0.12982 3.48571 2.83139 35 - -
7253 1.38629 1.38629 1.38629 1.38629
7254 0.03683 4.01306 4.01306 1.46634 0.26236 1.09861 0.40547
7255 36 0.14152 3.38312 2.80378 3.28505 36 - -
7256 1.38629 1.38629 1.38629 1.38629
7257 0.03683 4.01306 4.01306 1.46634 0.26236 1.09861 0.40547
7258 37 2.94952 3.59065 0.11684 3.49562 37 - -
7259 1.38629 1.38629 1.38629 1.38629
7260 0.03683 4.01306 4.01306 1.46634 0.26236 1.09861 0.40547
7261 38 3.09149 2.59697 3.13953 0.17821 38 - -
7262 1.38629 1.38629 1.38629 1.38629
7263 0.03683 4.01306 4.01306 1.46634 0.26236 1.09861 0.40547
7264 39 2.94952 3.59065 0.11684 3.49562 39 - -
7265 1.38629 1.38629 1.38629 1.38629
7266 0.03683 4.01306 4.01306 1.46634 0.26236 1.09861 0.40547
7267 40 3.09149 2.59697 3.13953 0.17821 40 - -
7268 1.38629 1.38629 1.38629 1.38629
7269 0.03683 4.01306 4.01306 1.46634 0.26236 1.09861 0.40547
7270 41 3.43640 0.12982 3.48571 2.83139 41 - -
7271 1.38629 1.38629 1.38629 1.38629
7272 0.03683 4.01306 4.01306 1.46634 0.26236 1.09861 0.40547
7273 42 3.43640 0.12982 3.48571 2.83139 42 - -
7274 1.38629 1.38629 1.38629 1.38629
7275 0.03683 4.01306 4.01306 1.46634 0.26236 1.09861 0.40547
7276 43 2.94952 3.59065 0.11684 3.49562 43 - -
7277 1.38629 1.38629 1.38629 1.38629
7278 0.03683 4.01306 4.01306 1.46634 0.26236 1.09861 0.40547
7279 44 3.09149 2.59697 3.13953 0.17821 44 - -
7280 1.38629 1.38629 1.38629 1.38629
7281 0.03683 4.01306 4.01306 1.46634 0.26236 1.09861 0.40547
7282 45 0.14152 3.38312 2.80378 3.28505 45 - -
7283 1.38629 1.38629 1.38629 1.38629
7284 0.01858 3.99482 * 1.46634 0.26236 0.00000 *
7285 //
7286 HMMER3/b [3.0 | March 2010]
7287 NAME 3_End_Oomycota_58S_end_twentysix_long
7288 LENG 45
7289 ALPH DNA
7290 RF no
7291 CS no
7292 MAP yes
7293 DATE Mon Jan 23 23:07:17 2012
7294 NSEQ 13
7295 EFFN 3.418213
7296 CKSUM 2570419389
7297 STATS LOCAL MSV -7.4116 0.71933
7298 STATS LOCAL VITERBI -7.6858 0.71933
7299 STATS LOCAL FORWARD -3.9853 0.71933
7300 HMM A C G T
7301 m->m m->i m->d i->m i->i d->m d->d
7302 COMPO 1.71992 1.35545 1.29332 1.24226
7303 1.38629 1.38629 1.38629 1.38629
7304 0.03625 4.02860 4.02860 1.46634 0.26236 0.00000 *
7305 1 3.46776 0.12615 3.51574 2.85416 1 - -
7306 1.38629 1.38629 1.38629 1.38629
7307 0.03625 4.02860 4.02860 1.46634 0.26236 1.09861 0.40547
7308 2 0.13798 3.41037 2.82144 3.31490 2 - -
7309 1.38629 1.38629 1.38629 1.38629
7310 0.03625 4.02860 4.02860 1.46634 0.26236 1.09861 0.40547
7311 3 3.46776 0.12615 3.51574 2.85416 3 - -
7312 1.38629 1.38629 1.38629 1.38629
7313 0.03625 4.02860 4.02860 1.46634 0.26236 1.09861 0.40547
7314 4 3.11910 2.61452 3.16608 0.17384 4 - -
7315 1.38629 1.38629 1.38629 1.38629
7316 0.03625 4.02860 4.02860 1.46634 0.26236 1.09861 0.40547
7317 5 3.11910 2.61452 3.16608 0.17384 5 - -
7318 1.38629 1.38629 1.38629 1.38629
7319 0.03625 4.02860 4.02860 1.46634 0.26236 1.09861 0.40547
7320 6 3.46776 0.12615 3.51574 2.85416 6 - -
7321 1.38629 1.38629 1.38629 1.38629
7322 0.03625 4.02860 4.02860 1.46634 0.26236 1.09861 0.40547
7323 7 3.46776 0.12615 3.51574 2.85416 7 - -
7324 1.38629 1.38629 1.38629 1.38629
7325 0.03625 4.02860 4.02860 1.46634 0.26236 1.09861 0.40547
7326 8 2.96841 3.61821 0.11388 3.52606 8 - -
7327 1.38629 1.38629 1.38629 1.38629
7328 0.03625 4.02860 4.02860 1.46634 0.26236 1.09861 0.40547
7329 9 2.96841 3.61821 0.11388 3.52606 9 - -
7330 1.38629 1.38629 1.38629 1.38629
7331 0.03625 4.02860 4.02860 1.46634 0.26236 1.09861 0.40547
7332 10 2.96841 3.61821 0.11388 3.52606 10 - -
7333 1.38629 1.38629 1.38629 1.38629
7334 0.03625 4.02860 4.02860 1.46634 0.26236 1.09861 0.40547
7335 11 3.11910 2.61452 3.16608 0.17384 11 - -
7336 1.38629 1.38629 1.38629 1.38629
7337 0.03625 4.02860 4.02860 1.46634 0.26236 1.09861 0.40547
7338 12 3.11910 2.61452 3.16608 0.17384 12 - -
7339 1.38629 1.38629 1.38629 1.38629
7340 0.03625 4.02860 4.02860 1.46634 0.26236 1.09861 0.40547
7341 13 0.13798 3.41037 2.82144 3.31490 13 - -
7342 1.38629 1.38629 1.38629 1.38629
7343 0.03625 4.02860 4.02860 1.46634 0.26236 1.09861 0.40547
7344 14 3.11910 2.61452 3.16608 0.17384 14 - -
7345 1.38629 1.38629 1.38629 1.38629
7346 0.03625 4.02860 4.02860 1.46634 0.26236 1.09861 0.40547
7347 15 2.07897 1.10844 0.88982 2.00889 15 - -
7348 1.38629 1.38629 1.38629 1.38629
7349 0.03625 4.02860 4.02860 1.46634 0.26236 1.09861 0.40547
7350 16 3.46776 0.12615 3.51574 2.85416 16 - -
7351 1.38629 1.38629 1.38629 1.38629
7352 0.03625 4.02860 4.02860 1.46634 0.26236 1.09861 0.40547
7353 17 3.46776 0.12615 3.51574 2.85416 17 - -
7354 1.38629 1.38629 1.38629 1.38629
7355 0.03625 4.02860 4.02860 1.46634 0.26236 1.09861 0.40547
7356 18 3.11910 2.61452 3.16608 0.17384 18 - -
7357 1.38629 1.38629 1.38629 1.38629
7358 0.03625 4.02860 4.02860 1.46634 0.26236 1.09861 0.40547
7359 19 2.96841 3.61821 0.11388 3.52606 19 - -
7360 1.38629 1.38629 1.38629 1.38629
7361 0.03625 4.02860 4.02860 1.46634 0.26236 1.09861 0.40547
7362 20 2.96841 3.61821 0.11388 3.52606 20 - -
7363 1.38629 1.38629 1.38629 1.38629
7364 0.03625 4.02860 4.02860 1.46634 0.26236 1.09861 0.40547
7365 21 2.96841 3.61821 0.11388 3.52606 21 - -
7366 1.38629 1.38629 1.38629 1.38629
7367 0.03625 4.02860 4.02860 1.46634 0.26236 1.09861 0.40547
7368 22 0.13798 3.41037 2.82144 3.31490 22 - -
7369 1.38629 1.38629 1.38629 1.38629
7370 0.03625 4.02860 4.02860 1.46634 0.26236 1.09861 0.40547
7371 23 2.96841 3.61821 0.11388 3.52606 23 - -
7372 1.38629 1.38629 1.38629 1.38629
7373 0.03625 4.02860 4.02860 1.46634 0.26236 1.09861 0.40547
7374 24 3.11910 2.61452 3.16608 0.17384 24 - -
7375 1.38629 1.38629 1.38629 1.38629
7376 0.03625 4.02860 4.02860 1.46634 0.26236 1.09861 0.40547
7377 25 0.13798 3.41037 2.82144 3.31490 25 - -
7378 1.38629 1.38629 1.38629 1.38629
7379 0.03625 4.02860 4.02860 1.46634 0.26236 1.09861 0.40547
7380 26 3.11910 2.61452 3.16608 0.17384 26 - -
7381 1.38629 1.38629 1.38629 1.38629
7382 0.03625 4.02860 4.02860 1.46634 0.26236 1.09861 0.40547
7383 27 2.96841 3.61821 0.11388 3.52606 27 - -
7384 1.38629 1.38629 1.38629 1.38629
7385 0.03625 4.02860 4.02860 1.46634 0.26236 1.09861 0.40547
7386 28 3.46776 0.12615 3.51574 2.85416 28 - -
7387 1.38629 1.38629 1.38629 1.38629
7388 0.03625 4.02860 4.02860 1.46634 0.26236 1.09861 0.40547
7389 29 3.46776 0.12615 3.51574 2.85416 29 - -
7390 1.38629 1.38629 1.38629 1.38629
7391 0.03625 4.02860 4.02860 1.46634 0.26236 1.09861 0.40547
7392 30 3.11910 2.61452 3.16608 0.17384 30 - -
7393 1.38629 1.38629 1.38629 1.38629
7394 0.03625 4.02860 4.02860 1.46634 0.26236 1.09861 0.40547
7395 31 2.96841 3.61821 0.11388 3.52606 31 - -
7396 1.38629 1.38629 1.38629 1.38629
7397 0.03625 4.02860 4.02860 1.46634 0.26236 1.09861 0.40547
7398 32 3.11910 2.61452 3.16608 0.17384 32 - -
7399 1.38629 1.38629 1.38629 1.38629
7400 0.03625 4.02860 4.02860 1.46634 0.26236 1.09861 0.40547
7401 33 0.13798 3.41037 2.82144 3.31490 33 - -
7402 1.38629 1.38629 1.38629 1.38629
7403 0.03625 4.02860 4.02860 1.46634 0.26236 1.09861 0.40547
7404 34 3.11910 2.61452 3.16608 0.17384 34 - -
7405 1.38629 1.38629 1.38629 1.38629
7406 0.03625 4.02860 4.02860 1.46634 0.26236 1.09861 0.40547
7407 35 3.46776 0.12615 3.51574 2.85416 35 - -
7408 1.38629 1.38629 1.38629 1.38629
7409 0.03625 4.02860 4.02860 1.46634 0.26236 1.09861 0.40547
7410 36 0.13798 3.41037 2.82144 3.31490 36 - -
7411 1.38629 1.38629 1.38629 1.38629
7412 0.03625 4.02860 4.02860 1.46634 0.26236 1.09861 0.40547
7413 37 2.96841 3.61821 0.11388 3.52606 37 - -
7414 1.38629 1.38629 1.38629 1.38629
7415 0.03625 4.02860 4.02860 1.46634 0.26236 1.09861 0.40547
7416 38 3.11910 2.61452 3.16608 0.17384 38 - -
7417 1.38629 1.38629 1.38629 1.38629
7418 0.03625 4.02860 4.02860 1.46634 0.26236 1.09861 0.40547
7419 39 2.96841 3.61821 0.11388 3.52606 39 - -
7420 1.38629 1.38629 1.38629 1.38629
7421 0.03625 4.02860 4.02860 1.46634 0.26236 1.09861 0.40547
7422 40 3.11910 2.61452 3.16608 0.17384 40 - -
7423 1.38629 1.38629 1.38629 1.38629
7424 0.03625 4.02860 4.02860 1.46634 0.26236 1.09861 0.40547
7425 41 3.46776 0.12615 3.51574 2.85416 41 - -
7426 1.38629 1.38629 1.38629 1.38629
7427 0.03625 4.02860 4.02860 1.46634 0.26236 1.09861 0.40547
7428 42 3.46776 0.12615 3.51574 2.85416 42 - -
7429 1.38629 1.38629 1.38629 1.38629
7430 0.03625 4.02860 4.02860 1.46634 0.26236 1.09861 0.40547
7431 43 2.96841 3.61821 0.11388 3.52606 43 - -
7432 1.38629 1.38629 1.38629 1.38629
7433 0.03625 4.02860 4.02860 1.46634 0.26236 1.09861 0.40547
7434 44 3.11910 2.61452 3.16608 0.17384 44 - -
7435 1.38629 1.38629 1.38629 1.38629
7436 0.03625 4.02860 4.02860 1.46634 0.26236 1.09861 0.40547
7437 45 0.13798 3.41037 2.82144 3.31490 45 - -
7438 1.38629 1.38629 1.38629 1.38629
7439 0.01829 4.01064 * 1.46634 0.26236 0.00000 *
7440 //
7441 HMMER3/b [3.0 | March 2010]
7442 NAME 3_End_Oomycota_58S_end_twentythreea_long
7443 LENG 45
7444 ALPH DNA
7445 RF no
7446 CS no
7447 MAP yes
7448 DATE Mon Jan 23 23:06:37 2012
7449 NSEQ 2
7450 EFFN 2.000000
7451 CKSUM 3990132220
7452 STATS LOCAL MSV -7.2795 0.72829
7453 STATS LOCAL VITERBI -8.2147 0.72829
7454 STATS LOCAL FORWARD -3.3678 0.72829
7455 HMM A C G T
7456 m->m m->i m->d i->m i->i d->m d->d
7457 COMPO 1.52092 1.38736 1.37824 1.27392
7458 1.38629 1.38629 1.38629 1.38629
7459 0.04879 3.73767 3.73767 1.46634 0.26236 0.00000 *
7460 1 2.81865 0.23582 2.88868 2.35662 1 - -
7461 1.38629 1.38629 1.38629 1.38629
7462 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
7463 2 0.23862 2.84929 2.43386 2.70756 2 - -
7464 1.38629 1.38629 1.38629 1.38629
7465 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
7466 3 2.81865 0.23582 2.88868 2.35662 3 - -
7467 1.38629 1.38629 1.38629 1.38629
7468 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
7469 4 2.57915 2.25909 2.64442 0.28946 4 - -
7470 1.38629 1.38629 1.38629 1.38629
7471 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
7472 5 2.57915 2.25909 2.64442 0.28946 5 - -
7473 1.38629 1.38629 1.38629 1.38629
7474 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
7475 6 2.81865 0.23582 2.88868 2.35662 6 - -
7476 1.38629 1.38629 1.38629 1.38629
7477 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
7478 7 2.81865 0.23582 2.88868 2.35662 7 - -
7479 1.38629 1.38629 1.38629 1.38629
7480 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
7481 8 2.53331 3.02441 0.20344 2.88069 8 - -
7482 1.38629 1.38629 1.38629 1.38629
7483 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
7484 9 2.53331 3.02441 0.20344 2.88069 9 - -
7485 1.38629 1.38629 1.38629 1.38629
7486 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
7487 10 2.53331 3.02441 0.20344 2.88069 10 - -
7488 1.38629 1.38629 1.38629 1.38629
7489 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
7490 11 2.57915 2.25909 2.64442 0.28946 11 - -
7491 1.38629 1.38629 1.38629 1.38629
7492 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
7493 12 2.57915 2.25909 2.64442 0.28946 12 - -
7494 1.38629 1.38629 1.38629 1.38629
7495 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
7496 13 0.23862 2.84929 2.43386 2.70756 13 - -
7497 1.38629 1.38629 1.38629 1.38629
7498 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
7499 14 2.53331 3.02441 0.20344 2.88069 14 - -
7500 1.38629 1.38629 1.38629 1.38629
7501 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
7502 15 2.57915 2.25909 2.64442 0.28946 15 - -
7503 1.38629 1.38629 1.38629 1.38629
7504 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
7505 16 2.81865 0.23582 2.88868 2.35662 16 - -
7506 1.38629 1.38629 1.38629 1.38629
7507 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
7508 17 2.81865 0.23582 2.88868 2.35662 17 - -
7509 1.38629 1.38629 1.38629 1.38629
7510 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
7511 18 2.57915 2.25909 2.64442 0.28946 18 - -
7512 1.38629 1.38629 1.38629 1.38629
7513 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
7514 19 2.53331 3.02441 0.20344 2.88069 19 - -
7515 1.38629 1.38629 1.38629 1.38629
7516 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
7517 20 2.53331 3.02441 0.20344 2.88069 20 - -
7518 1.38629 1.38629 1.38629 1.38629
7519 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
7520 21 0.23862 2.84929 2.43386 2.70756 21 - -
7521 1.38629 1.38629 1.38629 1.38629
7522 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
7523 22 0.23862 2.84929 2.43386 2.70756 22 - -
7524 1.38629 1.38629 1.38629 1.38629
7525 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
7526 23 2.53331 3.02441 0.20344 2.88069 23 - -
7527 1.38629 1.38629 1.38629 1.38629
7528 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
7529 24 2.57915 2.25909 2.64442 0.28946 24 - -
7530 1.38629 1.38629 1.38629 1.38629
7531 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
7532 25 0.23862 2.84929 2.43386 2.70756 25 - -
7533 1.38629 1.38629 1.38629 1.38629
7534 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
7535 26 2.57915 2.25909 2.64442 0.28946 26 - -
7536 1.38629 1.38629 1.38629 1.38629
7537 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
7538 27 2.53331 3.02441 0.20344 2.88069 27 - -
7539 1.38629 1.38629 1.38629 1.38629
7540 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
7541 28 2.81865 0.23582 2.88868 2.35662 28 - -
7542 1.38629 1.38629 1.38629 1.38629
7543 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
7544 29 2.81865 0.23582 2.88868 2.35662 29 - -
7545 1.38629 1.38629 1.38629 1.38629
7546 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
7547 30 2.57915 2.25909 2.64442 0.28946 30 - -
7548 1.38629 1.38629 1.38629 1.38629
7549 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
7550 31 2.53331 3.02441 0.20344 2.88069 31 - -
7551 1.38629 1.38629 1.38629 1.38629
7552 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
7553 32 2.57915 2.25909 2.64442 0.28946 32 - -
7554 1.38629 1.38629 1.38629 1.38629
7555 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
7556 33 0.23862 2.84929 2.43386 2.70756 33 - -
7557 1.38629 1.38629 1.38629 1.38629
7558 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
7559 34 2.57915 2.25909 2.64442 0.28946 34 - -
7560 1.38629 1.38629 1.38629 1.38629
7561 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
7562 35 2.81865 0.23582 2.88868 2.35662 35 - -
7563 1.38629 1.38629 1.38629 1.38629
7564 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
7565 36 0.23862 2.84929 2.43386 2.70756 36 - -
7566 1.38629 1.38629 1.38629 1.38629
7567 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
7568 37 0.23862 2.84929 2.43386 2.70756 37 - -
7569 1.38629 1.38629 1.38629 1.38629
7570 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
7571 38 2.57915 2.25909 2.64442 0.28946 38 - -
7572 1.38629 1.38629 1.38629 1.38629
7573 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
7574 39 2.53331 3.02441 0.20344 2.88069 39 - -
7575 1.38629 1.38629 1.38629 1.38629
7576 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
7577 40 2.57915 2.25909 2.64442 0.28946 40 - -
7578 1.38629 1.38629 1.38629 1.38629
7579 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
7580 41 2.81865 0.23582 2.88868 2.35662 41 - -
7581 1.38629 1.38629 1.38629 1.38629
7582 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
7583 42 2.81865 0.23582 2.88868 2.35662 42 - -
7584 1.38629 1.38629 1.38629 1.38629
7585 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
7586 43 2.53331 3.02441 0.20344 2.88069 43 - -
7587 1.38629 1.38629 1.38629 1.38629
7588 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
7589 44 2.57915 2.25909 2.64442 0.28946 44 - -
7590 1.38629 1.38629 1.38629 1.38629
7591 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
7592 45 0.23862 2.84929 2.43386 2.70756 45 - -
7593 1.38629 1.38629 1.38629 1.38629
7594 0.02469 3.71357 * 1.46634 0.26236 0.00000 *
7595 //
7596 HMMER3/b [3.0 | March 2010]
7597 NAME 3_End_Oomycota_58S_end_twentythreeb_long
7598 LENG 45
7599 ALPH DNA
7600 RF no
7601 CS no
7602 MAP yes
7603 DATE Mon Jan 23 23:06:43 2012
7604 NSEQ 2
7605 EFFN 2.000000
7606 CKSUM 1038123167
7607 STATS LOCAL MSV -7.5283 0.72812
7608 STATS LOCAL VITERBI -8.2416 0.72812
7609 STATS LOCAL FORWARD -3.4773 0.72812
7610 HMM A C G T
7611 m->m m->i m->d i->m i->i d->m d->d
7612 COMPO 1.66011 1.38886 1.26865 1.27544
7613 1.38629 1.38629 1.38629 1.38629
7614 0.04879 3.73767 3.73767 1.46634 0.26236 0.00000 *
7615 1 2.81865 0.23582 2.88868 2.35662 1 - -
7616 1.38629 1.38629 1.38629 1.38629
7617 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
7618 2 0.23862 2.84929 2.43386 2.70756 2 - -
7619 1.38629 1.38629 1.38629 1.38629
7620 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
7621 3 2.81865 0.23582 2.88868 2.35662 3 - -
7622 1.38629 1.38629 1.38629 1.38629
7623 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
7624 4 2.57915 2.25909 2.64442 0.28946 4 - -
7625 1.38629 1.38629 1.38629 1.38629
7626 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
7627 5 2.57915 2.25909 2.64442 0.28946 5 - -
7628 1.38629 1.38629 1.38629 1.38629
7629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
7630 6 2.81865 0.23582 2.88868 2.35662 6 - -
7631 1.38629 1.38629 1.38629 1.38629
7632 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
7633 7 2.81865 0.23582 2.88868 2.35662 7 - -
7634 1.38629 1.38629 1.38629 1.38629
7635 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
7636 8 2.53331 3.02441 0.20344 2.88069 8 - -
7637 1.38629 1.38629 1.38629 1.38629
7638 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
7639 9 2.53331 3.02441 0.20344 2.88069 9 - -
7640 1.38629 1.38629 1.38629 1.38629
7641 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
7642 10 2.53331 3.02441 0.20344 2.88069 10 - -
7643 1.38629 1.38629 1.38629 1.38629
7644 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
7645 11 2.57915 2.25909 2.64442 0.28946 11 - -
7646 1.38629 1.38629 1.38629 1.38629
7647 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
7648 12 2.57915 2.25909 2.64442 0.28946 12 - -
7649 1.38629 1.38629 1.38629 1.38629
7650 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
7651 13 0.23862 2.84929 2.43386 2.70756 13 - -
7652 1.38629 1.38629 1.38629 1.38629
7653 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
7654 14 2.53331 3.02441 0.20344 2.88069 14 - -
7655 1.38629 1.38629 1.38629 1.38629
7656 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
7657 15 2.57915 2.25909 2.64442 0.28946 15 - -
7658 1.38629 1.38629 1.38629 1.38629
7659 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
7660 16 2.81865 0.23582 2.88868 2.35662 16 - -
7661 1.38629 1.38629 1.38629 1.38629
7662 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
7663 17 2.81865 0.23582 2.88868 2.35662 17 - -
7664 1.38629 1.38629 1.38629 1.38629
7665 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
7666 18 2.57915 2.25909 2.64442 0.28946 18 - -
7667 1.38629 1.38629 1.38629 1.38629
7668 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
7669 19 2.53331 3.02441 0.20344 2.88069 19 - -
7670 1.38629 1.38629 1.38629 1.38629
7671 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
7672 20 2.53331 3.02441 0.20344 2.88069 20 - -
7673 1.38629 1.38629 1.38629 1.38629
7674 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
7675 21 2.53331 3.02441 0.20344 2.88069 21 - -
7676 1.38629 1.38629 1.38629 1.38629
7677 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
7678 22 0.23862 2.84929 2.43386 2.70756 22 - -
7679 1.38629 1.38629 1.38629 1.38629
7680 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
7681 23 2.53331 3.02441 0.20344 2.88069 23 - -
7682 1.38629 1.38629 1.38629 1.38629
7683 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
7684 24 2.57915 2.25909 2.64442 0.28946 24 - -
7685 1.38629 1.38629 1.38629 1.38629
7686 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
7687 25 0.23862 2.84929 2.43386 2.70756 25 - -
7688 1.38629 1.38629 1.38629 1.38629
7689 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
7690 26 2.57915 2.25909 2.64442 0.28946 26 - -
7691 1.38629 1.38629 1.38629 1.38629
7692 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
7693 27 2.53331 3.02441 0.20344 2.88069 27 - -
7694 1.38629 1.38629 1.38629 1.38629
7695 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
7696 28 2.81865 0.23582 2.88868 2.35662 28 - -
7697 1.38629 1.38629 1.38629 1.38629
7698 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
7699 29 2.81865 0.23582 2.88868 2.35662 29 - -
7700 1.38629 1.38629 1.38629 1.38629
7701 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
7702 30 2.57915 2.25909 2.64442 0.28946 30 - -
7703 1.38629 1.38629 1.38629 1.38629
7704 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
7705 31 2.53331 3.02441 0.20344 2.88069 31 - -
7706 1.38629 1.38629 1.38629 1.38629
7707 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
7708 32 2.57915 2.25909 2.64442 0.28946 32 - -
7709 1.38629 1.38629 1.38629 1.38629
7710 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
7711 33 0.23862 2.84929 2.43386 2.70756 33 - -
7712 1.38629 1.38629 1.38629 1.38629
7713 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
7714 34 2.57915 2.25909 2.64442 0.28946 34 - -
7715 1.38629 1.38629 1.38629 1.38629
7716 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
7717 35 2.81865 0.23582 2.88868 2.35662 35 - -
7718 1.38629 1.38629 1.38629 1.38629
7719 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
7720 36 0.23862 2.84929 2.43386 2.70756 36 - -
7721 1.38629 1.38629 1.38629 1.38629
7722 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
7723 37 2.53331 3.02441 0.20344 2.88069 37 - -
7724 1.38629 1.38629 1.38629 1.38629
7725 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
7726 38 2.57915 2.25909 2.64442 0.28946 38 - -
7727 1.38629 1.38629 1.38629 1.38629
7728 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
7729 39 2.53331 3.02441 0.20344 2.88069 39 - -
7730 1.38629 1.38629 1.38629 1.38629
7731 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
7732 40 2.57915 2.25909 2.64442 0.28946 40 - -
7733 1.38629 1.38629 1.38629 1.38629
7734 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
7735 41 2.81865 0.23582 2.88868 2.35662 41 - -
7736 1.38629 1.38629 1.38629 1.38629
7737 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
7738 42 2.81865 0.23582 2.88868 2.35662 42 - -
7739 1.38629 1.38629 1.38629 1.38629
7740 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
7741 43 2.53331 3.02441 0.20344 2.88069 43 - -
7742 1.38629 1.38629 1.38629 1.38629
7743 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
7744 44 2.57915 2.25909 2.64442 0.28946 44 - -
7745 1.38629 1.38629 1.38629 1.38629
7746 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
7747 45 0.23862 2.84929 2.43386 2.70756 45 - -
7748 1.38629 1.38629 1.38629 1.38629
7749 0.02469 3.71357 * 1.46634 0.26236 0.00000 *
7750 //
7751 HMMER3/b [3.0 | March 2010]
7752 NAME 3_End_Oomycota_58S_end_twentytwo_long
7753 LENG 45
7754 ALPH DNA
7755 RF no
7756 CS no
7757 MAP yes
7758 DATE Mon Jan 23 23:06:18 2012
7759 NSEQ 26
7760 EFFN 3.246826
7761 CKSUM 2755268631
7762 STATS LOCAL MSV -8.1324 0.71931
7763 STATS LOCAL VITERBI -7.6607 0.71931
7764 STATS LOCAL FORWARD -4.1374 0.71931
7765 HMM A C G T
7766 m->m m->i m->d i->m i->i d->m d->d
7767 COMPO 1.63309 1.38346 1.25712 1.31121
7768 1.38629 1.38629 1.38629 1.38629
7769 0.03741 3.99762 3.99762 1.46634 0.26236 0.00000 *
7770 1 3.40474 0.13364 3.45540 2.80830 1 - -
7771 1.38629 1.38629 1.38629 1.38629
7772 0.03741 3.99762 3.99762 1.46634 0.26236 1.09861 0.40547
7773 2 0.14519 3.35567 2.78592 3.25501 2 - -
7774 1.38629 1.38629 1.38629 1.38629
7775 0.03741 3.99762 3.99762 1.46634 0.26236 1.09861 0.40547
7776 3 3.40474 0.13364 3.45540 2.80830 3 - -
7777 1.38629 1.38629 1.38629 1.38629
7778 0.03741 3.99762 3.99762 1.46634 0.26236 1.09861 0.40547
7779 4 3.06385 2.57938 3.11295 0.18272 4 - -
7780 1.38629 1.38629 1.38629 1.38629
7781 0.03741 3.99762 3.99762 1.46634 0.26236 1.09861 0.40547
7782 5 3.06385 2.57938 3.11295 0.18272 5 - -
7783 1.38629 1.38629 1.38629 1.38629
7784 0.03741 3.99762 3.99762 1.46634 0.26236 1.09861 0.40547
7785 6 3.40474 0.13364 3.45540 2.80830 6 - -
7786 1.38629 1.38629 1.38629 1.38629
7787 0.03741 3.99762 3.99762 1.46634 0.26236 1.09861 0.40547
7788 7 3.40474 0.13364 3.45540 2.80830 7 - -
7789 1.38629 1.38629 1.38629 1.38629
7790 0.03741 3.99762 3.99762 1.46634 0.26236 1.09861 0.40547
7791 8 2.93029 3.56274 0.11993 3.46483 8 - -
7792 1.38629 1.38629 1.38629 1.38629
7793 0.03741 3.99762 3.99762 1.46634 0.26236 1.09861 0.40547
7794 9 2.93029 3.56274 0.11993 3.46483 9 - -
7795 1.38629 1.38629 1.38629 1.38629
7796 0.03741 3.99762 3.99762 1.46634 0.26236 1.09861 0.40547
7797 10 2.93029 3.56274 0.11993 3.46483 10 - -
7798 1.38629 1.38629 1.38629 1.38629
7799 0.03741 3.99762 3.99762 1.46634 0.26236 1.09861 0.40547
7800 11 3.06385 2.57938 3.11295 0.18272 11 - -
7801 1.38629 1.38629 1.38629 1.38629
7802 0.03741 3.99762 3.99762 1.46634 0.26236 1.09861 0.40547
7803 12 3.06385 2.57938 3.11295 0.18272 12 - -
7804 1.38629 1.38629 1.38629 1.38629
7805 0.03741 3.99762 3.99762 1.46634 0.26236 1.09861 0.40547
7806 13 0.14519 3.35567 2.78592 3.25501 13 - -
7807 1.38629 1.38629 1.38629 1.38629
7808 0.03741 3.99762 3.99762 1.46634 0.26236 1.09861 0.40547
7809 14 0.14519 3.35567 2.78592 3.25501 14 - -
7810 1.38629 1.38629 1.38629 1.38629
7811 0.03741 3.99762 3.99762 1.46634 0.26236 1.09861 0.40547
7812 15 2.93029 3.56274 0.11993 3.46483 15 - -
7813 1.38629 1.38629 1.38629 1.38629
7814 0.03741 3.99762 3.99762 1.46634 0.26236 1.09861 0.40547
7815 16 3.40474 0.13364 3.45540 2.80830 16 - -
7816 1.38629 1.38629 1.38629 1.38629
7817 0.03741 3.99762 3.99762 1.46634 0.26236 1.09861 0.40547
7818 17 3.40474 0.13364 3.45540 2.80830 17 - -
7819 1.38629 1.38629 1.38629 1.38629
7820 0.03741 3.99762 3.99762 1.46634 0.26236 1.09861 0.40547
7821 18 3.06385 2.57938 3.11295 0.18272 18 - -
7822 1.38629 1.38629 1.38629 1.38629
7823 0.03741 3.99762 3.99762 1.46634 0.26236 1.09861 0.40547
7824 19 2.93029 3.56274 0.11993 3.46483 19 - -
7825 1.38629 1.38629 1.38629 1.38629
7826 0.03741 3.99762 3.99762 1.46634 0.26236 1.09861 0.40547
7827 20 2.93029 3.56274 0.11993 3.46483 20 - -
7828 1.38629 1.38629 1.38629 1.38629
7829 0.03741 3.99762 3.99762 1.46634 0.26236 1.09861 0.40547
7830 21 2.93029 3.56274 0.11993 3.46483 21 - -
7831 1.38629 1.38629 1.38629 1.38629
7832 0.03741 3.99762 3.99762 1.46634 0.26236 1.09861 0.40547
7833 22 0.14519 3.35567 2.78592 3.25501 22 - -
7834 1.38629 1.38629 1.38629 1.38629
7835 0.03741 3.99762 3.99762 1.46634 0.26236 1.09861 0.40547
7836 23 2.93029 3.56274 0.11993 3.46483 23 - -
7837 1.38629 1.38629 1.38629 1.38629
7838 0.03741 3.99762 3.99762 1.46634 0.26236 1.09861 0.40547
7839 24 3.06385 2.57938 3.11295 0.18272 24 - -
7840 1.38629 1.38629 1.38629 1.38629
7841 0.03741 3.99762 3.99762 1.46634 0.26236 1.09861 0.40547
7842 25 0.14519 3.35567 2.78592 3.25501 25 - -
7843 1.38629 1.38629 1.38629 1.38629
7844 0.03741 3.99762 3.99762 1.46634 0.26236 1.09861 0.40547
7845 26 3.06385 2.57938 3.11295 0.18272 26 - -
7846 1.38629 1.38629 1.38629 1.38629
7847 0.03741 3.99762 3.99762 1.46634 0.26236 1.09861 0.40547
7848 27 2.93029 3.56274 0.11993 3.46483 27 - -
7849 1.38629 1.38629 1.38629 1.38629
7850 0.03741 3.99762 3.99762 1.46634 0.26236 1.09861 0.40547
7851 28 3.40474 0.13364 3.45540 2.80830 28 - -
7852 1.38629 1.38629 1.38629 1.38629
7853 0.03741 3.99762 3.99762 1.46634 0.26236 1.09861 0.40547
7854 29 3.40474 0.13364 3.45540 2.80830 29 - -
7855 1.38629 1.38629 1.38629 1.38629
7856 0.03741 3.99762 3.99762 1.46634 0.26236 1.09861 0.40547
7857 30 3.06385 2.57938 3.11295 0.18272 30 - -
7858 1.38629 1.38629 1.38629 1.38629
7859 0.03741 3.99762 3.99762 1.46634 0.26236 1.09861 0.40547
7860 31 2.93029 3.56274 0.11993 3.46483 31 - -
7861 1.38629 1.38629 1.38629 1.38629
7862 0.03741 3.99762 3.99762 1.46634 0.26236 1.09861 0.40547
7863 32 3.06385 2.57938 3.11295 0.18272 32 - -
7864 1.38629 1.38629 1.38629 1.38629
7865 0.03741 3.99762 3.99762 1.46634 0.26236 1.09861 0.40547
7866 33 0.14519 3.35567 2.78592 3.25501 33 - -
7867 1.38629 1.38629 1.38629 1.38629
7868 0.03741 3.99762 3.99762 1.46634 0.26236 1.09861 0.40547
7869 34 3.06385 2.57938 3.11295 0.18272 34 - -
7870 1.38629 1.38629 1.38629 1.38629
7871 0.03741 3.99762 3.99762 1.46634 0.26236 1.09861 0.40547
7872 35 3.40474 0.13364 3.45540 2.80830 35 - -
7873 1.38629 1.38629 1.38629 1.38629
7874 0.03741 3.99762 3.99762 1.46634 0.26236 1.09861 0.40547
7875 36 0.14519 3.35567 2.78592 3.25501 36 - -
7876 1.38629 1.38629 1.38629 1.38629
7877 0.03741 3.99762 3.99762 1.46634 0.26236 1.09861 0.40547
7878 37 2.93029 3.56274 0.11993 3.46483 37 - -
7879 1.38629 1.38629 1.38629 1.38629
7880 0.03741 3.99762 3.99762 1.46634 0.26236 1.09861 0.40547
7881 38 3.06385 2.57938 3.11295 0.18272 38 - -
7882 1.38629 1.38629 1.38629 1.38629
7883 0.03741 3.99762 3.99762 1.46634 0.26236 1.09861 0.40547
7884 39 2.93029 3.56274 0.11993 3.46483 39 - -
7885 1.38629 1.38629 1.38629 1.38629
7886 0.03741 3.99762 3.99762 1.46634 0.26236 1.09861 0.40547
7887 40 3.06385 2.57938 3.11295 0.18272 40 - -
7888 1.38629 1.38629 1.38629 1.38629
7889 0.03741 3.99762 3.99762 1.46634 0.26236 1.09861 0.40547
7890 41 3.40474 0.13364 3.45540 2.80830 41 - -
7891 1.38629 1.38629 1.38629 1.38629
7892 0.03741 3.99762 3.99762 1.46634 0.26236 1.09861 0.40547
7893 42 3.40474 0.13364 3.45540 2.80830 42 - -
7894 1.38629 1.38629 1.38629 1.38629
7895 0.03741 3.99762 3.99762 1.46634 0.26236 1.09861 0.40547
7896 43 2.93029 3.56274 0.11993 3.46483 43 - -
7897 1.38629 1.38629 1.38629 1.38629
7898 0.03741 3.99762 3.99762 1.46634 0.26236 1.09861 0.40547
7899 44 3.06385 2.57938 3.11295 0.18272 44 - -
7900 1.38629 1.38629 1.38629 1.38629
7901 0.03741 3.99762 3.99762 1.46634 0.26236 1.09861 0.40547
7902 45 0.14519 3.35567 2.78592 3.25501 45 - -
7903 1.38629 1.38629 1.38629 1.38629
7904 0.01888 3.97909 * 1.46634 0.26236 0.00000 *
7905 //
7906 HMMER3/b [3.0 | March 2010]
7907 NAME 3_End_Oomycota_58S_end_two_long
7908 LENG 45
7909 ALPH DNA
7910 RF no
7911 CS no
7912 MAP yes
7913 DATE Mon Jan 23 23:01:59 2012
7914 NSEQ 57
7915 EFFN 3.336365
7916 CKSUM 3639722455
7917 STATS LOCAL MSV -8.0140 0.71933
7918 STATS LOCAL VITERBI -7.9301 0.71933
7919 STATS LOCAL FORWARD -3.8991 0.71933
7920 HMM A C G T
7921 m->m m->i m->d i->m i->i d->m d->d
7922 COMPO 1.72359 1.51656 1.31924 1.09431
7923 1.38629 1.38629 1.38629 1.38629
7924 0.03679 4.01392 4.01392 1.46634 0.26236 0.00000 *
7925 1 3.43814 0.12961 3.48739 2.83266 1 - -
7926 1.38629 1.38629 1.38629 1.38629
7927 0.03679 4.01392 4.01392 1.46634 0.26236 1.09861 0.40547
7928 2 0.14132 3.38463 2.80476 3.28671 2 - -
7929 1.38629 1.38629 1.38629 1.38629
7930 0.03679 4.01392 4.01392 1.46634 0.26236 1.09861 0.40547
7931 3 3.43814 0.12961 3.48739 2.83266 3 - -
7932 1.38629 1.38629 1.38629 1.38629
7933 0.03679 4.01392 4.01392 1.46634 0.26236 1.09861 0.40547
7934 4 3.09302 2.59795 3.14101 0.17797 4 - -
7935 1.38629 1.38629 1.38629 1.38629
7936 0.03679 4.01392 4.01392 1.46634 0.26236 1.09861 0.40547
7937 5 3.09302 2.59795 3.14101 0.17797 5 - -
7938 1.38629 1.38629 1.38629 1.38629
7939 0.03679 4.01392 4.01392 1.46634 0.26236 1.09861 0.40547
7940 6 3.09302 2.59795 3.14101 0.17797 6 - -
7941 1.38629 1.38629 1.38629 1.38629
7942 0.03679 4.01392 4.01392 1.46634 0.26236 1.09861 0.40547
7943 7 3.43814 0.12961 3.48739 2.83266 7 - -
7944 1.38629 1.38629 1.38629 1.38629
7945 0.03679 4.01392 4.01392 1.46634 0.26236 1.09861 0.40547
7946 8 2.95057 3.59219 0.11668 3.49732 8 - -
7947 1.38629 1.38629 1.38629 1.38629
7948 0.03679 4.01392 4.01392 1.46634 0.26236 1.09861 0.40547
7949 9 2.95057 3.59219 0.11668 3.49732 9 - -
7950 1.38629 1.38629 1.38629 1.38629
7951 0.03679 4.01392 4.01392 1.46634 0.26236 1.09861 0.40547
7952 10 2.95057 3.59219 0.11668 3.49732 10 - -
7953 1.38629 1.38629 1.38629 1.38629
7954 0.03679 4.01392 4.01392 1.46634 0.26236 1.09861 0.40547
7955 11 3.09302 2.59795 3.14101 0.17797 11 - -
7956 1.38629 1.38629 1.38629 1.38629
7957 0.03679 4.01392 4.01392 1.46634 0.26236 1.09861 0.40547
7958 12 3.09302 2.59795 3.14101 0.17797 12 - -
7959 1.38629 1.38629 1.38629 1.38629
7960 0.03679 4.01392 4.01392 1.46634 0.26236 1.09861 0.40547
7961 13 0.14132 3.38463 2.80476 3.28671 13 - -
7962 1.38629 1.38629 1.38629 1.38629
7963 0.03679 4.01392 4.01392 1.46634 0.26236 1.09861 0.40547
7964 14 2.95057 3.59219 0.11668 3.49732 14 - -
7965 1.38629 1.38629 1.38629 1.38629
7966 0.03679 4.01392 4.01392 1.46634 0.26236 1.09861 0.40547
7967 15 3.09302 2.59795 3.14101 0.17797 15 - -
7968 1.38629 1.38629 1.38629 1.38629
7969 0.03679 4.01392 4.01392 1.46634 0.26236 1.09861 0.40547
7970 16 3.43814 0.12961 3.48739 2.83266 16 - -
7971 1.38629 1.38629 1.38629 1.38629
7972 0.03679 4.01392 4.01392 1.46634 0.26236 1.09861 0.40547
7973 17 3.43814 0.12961 3.48739 2.83266 17 - -
7974 1.38629 1.38629 1.38629 1.38629
7975 0.03679 4.01392 4.01392 1.46634 0.26236 1.09861 0.40547
7976 18 3.09302 2.59795 3.14101 0.17797 18 - -
7977 1.38629 1.38629 1.38629 1.38629
7978 0.03679 4.01392 4.01392 1.46634 0.26236 1.09861 0.40547
7979 19 2.95057 3.59219 0.11668 3.49732 19 - -
7980 1.38629 1.38629 1.38629 1.38629
7981 0.03679 4.01392 4.01392 1.46634 0.26236 1.09861 0.40547
7982 20 2.95057 3.59219 0.11668 3.49732 20 - -
7983 1.38629 1.38629 1.38629 1.38629
7984 0.03679 4.01392 4.01392 1.46634 0.26236 1.09861 0.40547
7985 21 0.14132 3.38463 2.80476 3.28671 21 - -
7986 1.38629 1.38629 1.38629 1.38629
7987 0.03679 4.01392 4.01392 1.46634 0.26236 1.09861 0.40547
7988 22 0.14132 3.38463 2.80476 3.28671 22 - -
7989 1.38629 1.38629 1.38629 1.38629
7990 0.03679 4.01392 4.01392 1.46634 0.26236 1.09861 0.40547
7991 23 2.95057 3.59219 0.11668 3.49732 23 - -
7992 1.38629 1.38629 1.38629 1.38629
7993 0.03679 4.01392 4.01392 1.46634 0.26236 1.09861 0.40547
7994 24 3.09302 2.59795 3.14101 0.17797 24 - -
7995 1.38629 1.38629 1.38629 1.38629
7996 0.03679 4.01392 4.01392 1.46634 0.26236 1.09861 0.40547
7997 25 0.14132 3.38463 2.80476 3.28671 25 - -
7998 1.38629 1.38629 1.38629 1.38629
7999 0.03679 4.01392 4.01392 1.46634 0.26236 1.09861 0.40547
8000 26 3.09302 2.59795 3.14101 0.17797 26 - -
8001 1.38629 1.38629 1.38629 1.38629
8002 0.03679 4.01392 4.01392 1.46634 0.26236 1.09861 0.40547
8003 27 2.95057 3.59219 0.11668 3.49732 27 - -
8004 1.38629 1.38629 1.38629 1.38629
8005 0.03679 4.01392 4.01392 1.46634 0.26236 1.09861 0.40547
8006 28 3.09302 2.59795 3.14101 0.17797 28 - -
8007 1.38629 1.38629 1.38629 1.38629
8008 0.03679 4.01392 4.01392 1.46634 0.26236 1.09861 0.40547
8009 29 3.43814 0.12961 3.48739 2.83266 29 - -
8010 1.38629 1.38629 1.38629 1.38629
8011 0.03679 4.01392 4.01392 1.46634 0.26236 1.09861 0.40547
8012 30 3.09302 2.59795 3.14101 0.17797 30 - -
8013 1.38629 1.38629 1.38629 1.38629
8014 0.03679 4.01392 4.01392 1.46634 0.26236 1.09861 0.40547
8015 31 2.95057 3.59219 0.11668 3.49732 31 - -
8016 1.38629 1.38629 1.38629 1.38629
8017 0.03679 4.01392 4.01392 1.46634 0.26236 1.09861 0.40547
8018 32 3.09302 2.59795 3.14101 0.17797 32 - -
8019 1.38629 1.38629 1.38629 1.38629
8020 0.03679 4.01392 4.01392 1.46634 0.26236 1.09861 0.40547
8021 33 0.14132 3.38463 2.80476 3.28671 33 - -
8022 1.38629 1.38629 1.38629 1.38629
8023 0.03679 4.01392 4.01392 1.46634 0.26236 1.09861 0.40547
8024 34 3.09302 2.59795 3.14101 0.17797 34 - -
8025 1.38629 1.38629 1.38629 1.38629
8026 0.03679 4.01392 4.01392 1.46634 0.26236 1.09861 0.40547
8027 35 3.43814 0.12961 3.48739 2.83266 35 - -
8028 1.38629 1.38629 1.38629 1.38629
8029 0.03679 4.01392 4.01392 1.46634 0.26236 1.09861 0.40547
8030 36 0.14132 3.38463 2.80476 3.28671 36 - -
8031 1.38629 1.38629 1.38629 1.38629
8032 0.03679 4.01392 4.01392 1.46634 0.26236 1.09861 0.40547
8033 37 2.95057 3.59219 0.11668 3.49732 37 - -
8034 1.38629 1.38629 1.38629 1.38629
8035 0.03679 4.01392 4.01392 1.46634 0.26236 1.09861 0.40547
8036 38 3.09302 2.59795 3.14101 0.17797 38 - -
8037 1.38629 1.38629 1.38629 1.38629
8038 0.03679 4.01392 4.01392 1.46634 0.26236 1.09861 0.40547
8039 39 2.95057 3.59219 0.11668 3.49732 39 - -
8040 1.38629 1.38629 1.38629 1.38629
8041 0.03679 4.01392 4.01392 1.46634 0.26236 1.09861 0.40547
8042 40 3.09302 2.59795 3.14101 0.17797 40 - -
8043 1.38629 1.38629 1.38629 1.38629
8044 0.03679 4.01392 4.01392 1.46634 0.26236 1.09861 0.40547
8045 41 3.43814 0.12961 3.48739 2.83266 41 - -
8046 1.38629 1.38629 1.38629 1.38629
8047 0.03679 4.01392 4.01392 1.46634 0.26236 1.09861 0.40547
8048 42 3.43814 0.12961 3.48739 2.83266 42 - -
8049 1.38629 1.38629 1.38629 1.38629
8050 0.03679 4.01392 4.01392 1.46634 0.26236 1.09861 0.40547
8051 43 2.95057 3.59219 0.11668 3.49732 43 - -
8052 1.38629 1.38629 1.38629 1.38629
8053 0.03679 4.01392 4.01392 1.46634 0.26236 1.09861 0.40547
8054 44 3.09302 2.59795 3.14101 0.17797 44 - -
8055 1.38629 1.38629 1.38629 1.38629
8056 0.03679 4.01392 4.01392 1.46634 0.26236 1.09861 0.40547
8057 45 3.09302 2.59795 3.14101 0.17797 45 - -
8058 1.38629 1.38629 1.38629 1.38629
8059 0.01857 3.99570 * 1.46634 0.26236 0.00000 *
8060 //
8061 HMMER3/b [3.0 | March 2010]
8062 NAME 2_5.8_Oomycota_58S_start_long
8063 LENG 45
8064 ALPH DNA
8065 RF no
8066 CS no
8067 MAP yes
8068 DATE Sat Jan 21 16:23:27 2012
8069 NSEQ 5114
8070 EFFN 3.418840
8071 CKSUM 239509203
8072 STATS LOCAL MSV -7.6678 0.71932
8073 STATS LOCAL VITERBI -7.5309 0.71932
8074 STATS LOCAL FORWARD -4.1743 0.71932
8075 HMM A C G T
8076 m->m m->i m->d i->m i->i d->m d->d
8077 COMPO 1.27860 1.38869 1.38454 1.50628
8078 1.38629 1.38629 1.38629 1.38629
8079 0.03624 4.02872 4.02872 1.46634 0.26236 0.00000 *
8080 1 3.07999 0.15785 3.32136 2.74956 1 - -
8081 1.38629 1.38629 1.38629 1.38629
8082 0.03624 4.02872 4.02872 1.46634 0.26236 1.09861 0.40547
8083 2 0.13796 3.41057 2.82158 3.31513 2 - -
8084 1.38629 1.38629 1.38629 1.38629
8085 0.03624 4.02872 4.02872 1.46634 0.26236 1.09861 0.40547
8086 3 0.13796 3.41057 2.82158 3.31513 3 - -
8087 1.38629 1.38629 1.38629 1.38629
8088 0.03624 4.02872 4.02872 1.46634 0.26236 1.09861 0.40547
8089 4 3.46800 0.12612 3.51597 2.85433 4 - -
8090 1.38629 1.38629 1.38629 1.38629
8091 0.03624 4.02872 4.02872 1.46634 0.26236 1.09861 0.40547
8092 5 3.11931 2.61465 3.16629 0.17381 5 - -
8093 1.38629 1.38629 1.38629 1.38629
8094 0.03624 4.02872 4.02872 1.46634 0.26236 1.09861 0.40547
8095 6 3.11931 2.61465 3.16629 0.17381 6 - -
8096 1.38629 1.38629 1.38629 1.38629
8097 0.03624 4.02872 4.02872 1.46634 0.26236 1.09861 0.40547
8098 7 3.11931 2.61465 3.16629 0.17381 7 - -
8099 1.38629 1.38629 1.38629 1.38629
8100 0.03624 4.02872 4.02872 1.46634 0.26236 1.09861 0.40547
8101 8 3.46800 0.12612 3.51597 2.85433 8 - -
8102 1.38629 1.38629 1.38629 1.38629
8103 0.03624 4.02872 4.02872 1.46634 0.26236 1.09861 0.40547
8104 9 0.13796 3.41057 2.82158 3.31513 9 - -
8105 1.38629 1.38629 1.38629 1.38629
8106 0.03624 4.02872 4.02872 1.46634 0.26236 1.09861 0.40547
8107 10 2.30238 3.12456 0.21093 3.07504 10 - -
8108 1.38629 1.38629 1.38629 1.38629
8109 0.03624 4.02872 4.02872 1.46634 0.26236 1.09861 0.40547
8110 11 3.46800 0.12612 3.51597 2.85433 11 - -
8111 1.38629 1.38629 1.38629 1.38629
8112 0.03624 4.02872 4.02872 1.46634 0.26236 1.09861 0.40547
8113 12 0.14638 3.37765 2.74188 3.28091 12 - -
8114 1.38629 1.38629 1.38629 1.38629
8115 0.03634 4.02872 4.02329 1.46634 0.26236 1.09861 0.40547
8116 13 2.96844 3.61825 0.11388 3.52611 13 - -
8117 1.38629 1.38629 1.38629 1.38629
8118 0.03625 4.02862 4.02862 1.46634 0.26236 1.09500 0.40728
8119 14 3.11931 2.61465 3.16629 0.17381 14 - -
8120 1.38629 1.38629 1.38629 1.38629
8121 0.03624 4.02872 4.02872 1.46634 0.26236 1.09861 0.40547
8122 15 2.96856 3.61842 0.11386 3.52630 15 - -
8123 1.38629 1.38629 1.38629 1.38629
8124 0.03624 4.02872 4.02872 1.46634 0.26236 1.09861 0.40547
8125 16 2.96856 3.61842 0.11386 3.52630 16 - -
8126 1.38629 1.38629 1.38629 1.38629
8127 0.03624 4.02872 4.02872 1.46634 0.26236 1.09861 0.40547
8128 17 0.13796 3.41057 2.82158 3.31513 17 - -
8129 1.38629 1.38629 1.38629 1.38629
8130 0.03624 4.02872 4.02872 1.46634 0.26236 1.09861 0.40547
8131 18 3.11931 2.61465 3.16629 0.17381 18 - -
8132 1.38629 1.38629 1.38629 1.38629
8133 0.03624 4.02872 4.02872 1.46634 0.26236 1.09861 0.40547
8134 19 2.96856 3.61842 0.11386 3.52630 19 - -
8135 1.38629 1.38629 1.38629 1.38629
8136 0.03634 4.02872 4.02329 1.46634 0.26236 1.09861 0.40547
8137 20 3.11914 2.61454 3.16612 0.17383 20 - -
8138 1.38629 1.38629 1.38629 1.38629
8139 0.03625 4.02862 4.02862 1.46634 0.26236 1.09500 0.40728
8140 21 3.37401 0.13987 3.32703 2.80717 21 - -
8141 1.38629 1.38629 1.38629 1.38629
8142 0.03624 4.02872 4.02872 1.46634 0.26236 1.09861 0.40547
8143 22 3.11931 2.61465 3.16629 0.17381 22 - -
8144 1.38629 1.38629 1.38629 1.38629
8145 0.03624 4.02872 4.02872 1.46634 0.26236 1.09861 0.40547
8146 23 0.16908 3.10776 2.74696 3.06335 23 - -
8147 1.38629 1.38629 1.38629 1.38629
8148 0.03624 4.02872 4.02872 1.46634 0.26236 1.09861 0.40547
8149 24 2.96856 3.61842 0.11386 3.52630 24 - -
8150 1.38629 1.38629 1.38629 1.38629
8151 0.03624 4.02872 4.02872 1.46634 0.26236 1.09861 0.40547
8152 25 2.96856 3.61842 0.11386 3.52630 25 - -
8153 1.38629 1.38629 1.38629 1.38629
8154 0.03644 4.02872 4.01789 1.46634 0.26236 1.09861 0.40547
8155 26 3.46762 0.12617 3.51560 2.85405 26 - -
8156 1.38629 1.38629 1.38629 1.38629
8157 0.03625 4.02852 4.02852 1.46634 0.26236 1.09141 0.40909
8158 27 3.11931 2.61465 3.16629 0.17381 27 - -
8159 1.38629 1.38629 1.38629 1.38629
8160 0.03624 4.02872 4.02872 1.46634 0.26236 1.09861 0.40547
8161 28 3.46800 0.12612 3.51597 2.85433 28 - -
8162 1.38629 1.38629 1.38629 1.38629
8163 0.03624 4.02872 4.02872 1.46634 0.26236 1.09861 0.40547
8164 29 2.90845 3.33547 0.13232 3.38795 29 - -
8165 1.38629 1.38629 1.38629 1.38629
8166 0.03624 4.02872 4.02872 1.46634 0.26236 1.09861 0.40547
8167 30 3.46800 0.12612 3.51597 2.85433 30 - -
8168 1.38629 1.38629 1.38629 1.38629
8169 0.03624 4.02872 4.02872 1.46634 0.26236 1.09861 0.40547
8170 31 0.18894 3.05008 2.65115 2.91442 31 - -
8171 1.38629 1.38629 1.38629 1.38629
8172 0.03624 4.02872 4.02872 1.46634 0.26236 1.09861 0.40547
8173 32 3.46800 0.12612 3.51597 2.85433 32 - -
8174 1.38629 1.38629 1.38629 1.38629
8175 0.03624 4.02872 4.02872 1.46634 0.26236 1.09861 0.40547
8176 33 0.15609 3.17750 2.77808 3.20235 33 - -
8177 1.38629 1.38629 1.38629 1.38629
8178 0.03624 4.02872 4.02872 1.46634 0.26236 1.09861 0.40547
8179 34 3.00786 2.34737 3.05892 0.21314 34 - -
8180 1.38629 1.38629 1.38629 1.38629
8181 0.03624 4.02872 4.02872 1.46634 0.26236 1.09861 0.40547
8182 35 3.27541 0.14023 3.42390 2.80591 35 - -
8183 1.38629 1.38629 1.38629 1.38629
8184 0.03624 4.02872 4.02872 1.46634 0.26236 1.09861 0.40547
8185 36 2.96856 3.61842 0.11386 3.52630 36 - -
8186 1.38629 1.38629 1.38629 1.38629
8187 0.03624 4.02872 4.02872 1.46634 0.26236 1.09861 0.40547
8188 37 0.13796 3.41057 2.82158 3.31513 37 - -
8189 1.38629 1.38629 1.38629 1.38629
8190 0.03624 4.02872 4.02872 1.46634 0.26236 1.09861 0.40547
8191 38 3.11931 2.61465 3.16629 0.17381 38 - -
8192 1.38629 1.38629 1.38629 1.38629
8193 0.03655 4.02872 4.01245 1.46634 0.26236 1.09861 0.40547
8194 39 2.85717 3.56849 0.12400 3.47405 39 - -
8195 1.38629 1.38629 1.38629 1.38629
8196 0.03625 4.02843 4.02843 1.46634 0.26236 1.08780 0.41092
8197 40 0.15390 3.34924 2.67664 3.25104 40 - -
8198 1.38629 1.38629 1.38629 1.38629
8199 0.03624 4.02872 4.02872 1.46634 0.26236 1.09861 0.40547
8200 41 0.13796 3.41057 2.82158 3.31513 41 - -
8201 1.38629 1.38629 1.38629 1.38629
8202 0.03645 4.02872 4.01774 1.46634 0.26236 1.09861 0.40547
8203 42 2.82175 3.55190 0.12751 3.45653 42 - -
8204 1.38629 1.38629 1.38629 1.38629
8205 0.03625 4.02852 4.02852 1.46634 0.26236 1.09131 0.40914
8206 43 0.15287 3.35306 2.68523 3.25507 43 - -
8207 1.38629 1.38629 1.38629 1.38629
8208 0.03624 4.02872 4.02872 1.46634 0.26236 1.09861 0.40547
8209 44 0.17216 3.12078 2.64919 3.13894 44 - -
8210 1.38629 1.38629 1.38629 1.38629
8211 0.03624 4.02872 4.02872 1.46634 0.26236 1.09861 0.40547
8212 45 3.46800 0.12612 3.51597 2.85433 45 - -
8213 1.38629 1.38629 1.38629 1.38629
8214 0.01829 4.01076 * 1.46634 0.26236 0.00000 *
8215 //
8216 HMMER3/b [3.0 | March 2010]
8217 NAME 4_LSU_Oomycota_4_LSU_start_eight_long
8218 LENG 45
8219 ALPH DNA
8220 RF no
8221 CS no
8222 MAP yes
8223 DATE Tue Jan 24 11:03:30 2012
8224 NSEQ 3
8225 EFFN 3.000000
8226 CKSUM 243398462
8227 STATS LOCAL MSV -7.8088 0.72045
8228 STATS LOCAL VITERBI -7.7580 0.72045
8229 STATS LOCAL FORWARD -4.0808 0.72045
8230 HMM A C G T
8231 m->m m->i m->d i->m i->i d->m d->d
8232 COMPO 1.11500 1.46208 1.59571 1.43731
8233 1.38629 1.38629 1.38629 1.38629
8234 0.03922 3.95124 3.95124 1.46634 0.26236 0.00000 *
8235 1 0.15719 3.27118 2.73043 3.16274 1 - -
8236 1.38629 1.38629 1.38629 1.38629
8237 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
8238 2 2.97980 2.52563 3.03204 0.19727 2 - -
8239 1.38629 1.38629 1.38629 1.38629
8240 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
8241 3 2.97980 2.52563 3.03204 0.19727 3 - -
8242 1.38629 1.38629 1.38629 1.38629
8243 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
8244 4 2.86982 3.47591 0.13017 3.36931 4 - -
8245 1.38629 1.38629 1.38629 1.38629
8246 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
8247 5 2.86982 3.47591 0.13017 3.36931 5 - -
8248 1.38629 1.38629 1.38629 1.38629
8249 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
8250 6 0.15719 3.27118 2.73043 3.16274 6 - -
8251 1.38629 1.38629 1.38629 1.38629
8252 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
8253 7 3.30705 0.14631 3.36166 2.73626 7 - -
8254 1.38629 1.38629 1.38629 1.38629
8255 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
8256 8 3.30705 0.14631 3.36166 2.73626 8 - -
8257 1.38629 1.38629 1.38629 1.38629
8258 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
8259 9 2.97980 2.52563 3.03204 0.19727 9 - -
8260 1.38629 1.38629 1.38629 1.38629
8261 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
8262 10 2.86982 3.47591 0.13017 3.36931 10 - -
8263 1.38629 1.38629 1.38629 1.38629
8264 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
8265 11 0.15719 3.27118 2.73043 3.16274 11 - -
8266 1.38629 1.38629 1.38629 1.38629
8267 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
8268 12 2.97980 2.52563 3.03204 0.19727 12 - -
8269 1.38629 1.38629 1.38629 1.38629
8270 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
8271 13 0.15719 3.27118 2.73043 3.16274 13 - -
8272 1.38629 1.38629 1.38629 1.38629
8273 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
8274 14 2.97980 2.52563 3.03204 0.19727 14 - -
8275 1.38629 1.38629 1.38629 1.38629
8276 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
8277 15 3.30705 0.14631 3.36166 2.73626 15 - -
8278 1.38629 1.38629 1.38629 1.38629
8279 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
8280 16 0.15719 3.27118 2.73043 3.16274 16 - -
8281 1.38629 1.38629 1.38629 1.38629
8282 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
8283 17 0.15719 3.27118 2.73043 3.16274 17 - -
8284 1.38629 1.38629 1.38629 1.38629
8285 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
8286 18 2.86982 3.47591 0.13017 3.36931 18 - -
8287 1.38629 1.38629 1.38629 1.38629
8288 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
8289 19 2.97980 2.52563 3.03204 0.19727 19 - -
8290 1.38629 1.38629 1.38629 1.38629
8291 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
8292 20 0.15719 3.27118 2.73043 3.16274 20 - -
8293 1.38629 1.38629 1.38629 1.38629
8294 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
8295 21 0.15719 3.27118 2.73043 3.16274 21 - -
8296 1.38629 1.38629 1.38629 1.38629
8297 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
8298 22 2.86982 3.47591 0.13017 3.36931 22 - -
8299 1.38629 1.38629 1.38629 1.38629
8300 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
8301 23 0.15719 3.27118 2.73043 3.16274 23 - -
8302 1.38629 1.38629 1.38629 1.38629
8303 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
8304 24 3.30705 0.14631 3.36166 2.73626 24 - -
8305 1.38629 1.38629 1.38629 1.38629
8306 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
8307 25 2.97980 2.52563 3.03204 0.19727 25 - -
8308 1.38629 1.38629 1.38629 1.38629
8309 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
8310 26 0.15719 3.27118 2.73043 3.16274 26 - -
8311 1.38629 1.38629 1.38629 1.38629
8312 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
8313 27 3.30705 0.14631 3.36166 2.73626 27 - -
8314 1.38629 1.38629 1.38629 1.38629
8315 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
8316 28 3.30705 0.14631 3.36166 2.73626 28 - -
8317 1.38629 1.38629 1.38629 1.38629
8318 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
8319 29 3.30705 0.14631 3.36166 2.73626 29 - -
8320 1.38629 1.38629 1.38629 1.38629
8321 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
8322 30 2.86982 3.47591 0.13017 3.36931 30 - -
8323 1.38629 1.38629 1.38629 1.38629
8324 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
8325 31 3.30705 0.14631 3.36166 2.73626 31 - -
8326 1.38629 1.38629 1.38629 1.38629
8327 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
8328 32 2.97980 2.52563 3.03204 0.19727 32 - -
8329 1.38629 1.38629 1.38629 1.38629
8330 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
8331 33 2.86982 3.47591 0.13017 3.36931 33 - -
8332 1.38629 1.38629 1.38629 1.38629
8333 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
8334 34 0.15719 3.27118 2.73043 3.16274 34 - -
8335 1.38629 1.38629 1.38629 1.38629
8336 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
8337 35 0.15719 3.27118 2.73043 3.16274 35 - -
8338 1.38629 1.38629 1.38629 1.38629
8339 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
8340 36 3.30705 0.14631 3.36166 2.73626 36 - -
8341 1.38629 1.38629 1.38629 1.38629
8342 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
8343 37 2.97980 2.52563 3.03204 0.19727 37 - -
8344 1.38629 1.38629 1.38629 1.38629
8345 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
8346 38 2.97980 2.52563 3.03204 0.19727 38 - -
8347 1.38629 1.38629 1.38629 1.38629
8348 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
8349 39 0.15719 3.27118 2.73043 3.16274 39 - -
8350 1.38629 1.38629 1.38629 1.38629
8351 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
8352 40 0.15719 3.27118 2.73043 3.16274 40 - -
8353 1.38629 1.38629 1.38629 1.38629
8354 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
8355 41 2.86982 3.47591 0.13017 3.36931 41 - -
8356 1.38629 1.38629 1.38629 1.38629
8357 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
8358 42 3.30705 0.14631 3.36166 2.73626 42 - -
8359 1.38629 1.38629 1.38629 1.38629
8360 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
8361 43 0.15719 3.27118 2.73043 3.16274 43 - -
8362 1.38629 1.38629 1.38629 1.38629
8363 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
8364 44 2.97980 2.52563 3.03204 0.19727 44 - -
8365 1.38629 1.38629 1.38629 1.38629
8366 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
8367 45 0.15719 3.27118 2.73043 3.16274 45 - -
8368 1.38629 1.38629 1.38629 1.38629
8369 0.01980 3.93183 * 1.46634 0.26236 0.00000 *
8370 //
8371 HMMER3/b [3.0 | March 2010]
8372 NAME 4_LSU_Oomycota_4_LSU_start_eleven_long
8373 LENG 45
8374 ALPH DNA
8375 RF no
8376 CS no
8377 MAP yes
8378 DATE Tue Jan 24 11:03:58 2012
8379 NSEQ 18
8380 EFFN 3.247559
8381 CKSUM 2515016115
8382 STATS LOCAL MSV -7.9395 0.71933
8383 STATS LOCAL VITERBI -7.5658 0.71933
8384 STATS LOCAL FORWARD -4.1596 0.71933
8385 HMM A C G T
8386 m->m m->i m->d i->m i->i d->m d->d
8387 COMPO 1.10884 1.46713 1.51997 1.51071
8388 1.38629 1.38629 1.38629 1.38629
8389 0.03740 3.99775 3.99775 1.46634 0.26236 0.00000 *
8390 1 0.14515 3.35591 2.78608 3.25528 1 - -
8391 1.38629 1.38629 1.38629 1.38629
8392 0.03740 3.99775 3.99775 1.46634 0.26236 1.09861 0.40547
8393 2 0.14515 3.35591 2.78608 3.25528 2 - -
8394 1.38629 1.38629 1.38629 1.38629
8395 0.03740 3.99775 3.99775 1.46634 0.26236 1.09861 0.40547
8396 3 3.06409 2.57953 3.11318 0.18268 3 - -
8397 1.38629 1.38629 1.38629 1.38629
8398 0.03740 3.99775 3.99775 1.46634 0.26236 1.09861 0.40547
8399 4 2.93046 3.56298 0.11991 3.46510 4 - -
8400 1.38629 1.38629 1.38629 1.38629
8401 0.03740 3.99775 3.99775 1.46634 0.26236 1.09861 0.40547
8402 5 2.93046 3.56298 0.11991 3.46510 5 - -
8403 1.38629 1.38629 1.38629 1.38629
8404 0.03740 3.99775 3.99775 1.46634 0.26236 1.09861 0.40547
8405 6 0.14515 3.35591 2.78608 3.25528 6 - -
8406 1.38629 1.38629 1.38629 1.38629
8407 0.03740 3.99775 3.99775 1.46634 0.26236 1.09861 0.40547
8408 7 3.40502 0.13361 3.45566 2.80851 7 - -
8409 1.38629 1.38629 1.38629 1.38629
8410 0.03740 3.99775 3.99775 1.46634 0.26236 1.09861 0.40547
8411 8 3.40502 0.13361 3.45566 2.80851 8 - -
8412 1.38629 1.38629 1.38629 1.38629
8413 0.03740 3.99775 3.99775 1.46634 0.26236 1.09861 0.40547
8414 9 3.06409 2.57953 3.11318 0.18268 9 - -
8415 1.38629 1.38629 1.38629 1.38629
8416 0.03740 3.99775 3.99775 1.46634 0.26236 1.09861 0.40547
8417 10 2.93046 3.56298 0.11991 3.46510 10 - -
8418 1.38629 1.38629 1.38629 1.38629
8419 0.03740 3.99775 3.99775 1.46634 0.26236 1.09861 0.40547
8420 11 0.14515 3.35591 2.78608 3.25528 11 - -
8421 1.38629 1.38629 1.38629 1.38629
8422 0.03740 3.99775 3.99775 1.46634 0.26236 1.09861 0.40547
8423 12 3.06409 2.57953 3.11318 0.18268 12 - -
8424 1.38629 1.38629 1.38629 1.38629
8425 0.03740 3.99775 3.99775 1.46634 0.26236 1.09861 0.40547
8426 13 0.14515 3.35591 2.78608 3.25528 13 - -
8427 1.38629 1.38629 1.38629 1.38629
8428 0.03740 3.99775 3.99775 1.46634 0.26236 1.09861 0.40547
8429 14 3.06409 2.57953 3.11318 0.18268 14 - -
8430 1.38629 1.38629 1.38629 1.38629
8431 0.03740 3.99775 3.99775 1.46634 0.26236 1.09861 0.40547
8432 15 3.40502 0.13361 3.45566 2.80851 15 - -
8433 1.38629 1.38629 1.38629 1.38629
8434 0.03740 3.99775 3.99775 1.46634 0.26236 1.09861 0.40547
8435 16 0.14515 3.35591 2.78608 3.25528 16 - -
8436 1.38629 1.38629 1.38629 1.38629
8437 0.03740 3.99775 3.99775 1.46634 0.26236 1.09861 0.40547
8438 17 2.93046 3.56298 0.11991 3.46510 17 - -
8439 1.38629 1.38629 1.38629 1.38629
8440 0.03740 3.99775 3.99775 1.46634 0.26236 1.09861 0.40547
8441 18 2.93046 3.56298 0.11991 3.46510 18 - -
8442 1.38629 1.38629 1.38629 1.38629
8443 0.03740 3.99775 3.99775 1.46634 0.26236 1.09861 0.40547
8444 19 3.40502 0.13361 3.45566 2.80851 19 - -
8445 1.38629 1.38629 1.38629 1.38629
8446 0.03740 3.99775 3.99775 1.46634 0.26236 1.09861 0.40547
8447 20 0.14515 3.35591 2.78608 3.25528 20 - -
8448 1.38629 1.38629 1.38629 1.38629
8449 0.03740 3.99775 3.99775 1.46634 0.26236 1.09861 0.40547
8450 21 0.14515 3.35591 2.78608 3.25528 21 - -
8451 1.38629 1.38629 1.38629 1.38629
8452 0.03740 3.99775 3.99775 1.46634 0.26236 1.09861 0.40547
8453 22 2.93046 3.56298 0.11991 3.46510 22 - -
8454 1.38629 1.38629 1.38629 1.38629
8455 0.03740 3.99775 3.99775 1.46634 0.26236 1.09861 0.40547
8456 23 0.14515 3.35591 2.78608 3.25528 23 - -
8457 1.38629 1.38629 1.38629 1.38629
8458 0.03740 3.99775 3.99775 1.46634 0.26236 1.09861 0.40547
8459 24 3.06409 2.57953 3.11318 0.18268 24 - -
8460 1.38629 1.38629 1.38629 1.38629
8461 0.03740 3.99775 3.99775 1.46634 0.26236 1.09861 0.40547
8462 25 3.06409 2.57953 3.11318 0.18268 25 - -
8463 1.38629 1.38629 1.38629 1.38629
8464 0.03740 3.99775 3.99775 1.46634 0.26236 1.09861 0.40547
8465 26 0.14515 3.35591 2.78608 3.25528 26 - -
8466 1.38629 1.38629 1.38629 1.38629
8467 0.03740 3.99775 3.99775 1.46634 0.26236 1.09861 0.40547
8468 27 3.40502 0.13361 3.45566 2.80851 27 - -
8469 1.38629 1.38629 1.38629 1.38629
8470 0.03740 3.99775 3.99775 1.46634 0.26236 1.09861 0.40547
8471 28 3.40502 0.13361 3.45566 2.80851 28 - -
8472 1.38629 1.38629 1.38629 1.38629
8473 0.03740 3.99775 3.99775 1.46634 0.26236 1.09861 0.40547
8474 29 3.40502 0.13361 3.45566 2.80851 29 - -
8475 1.38629 1.38629 1.38629 1.38629
8476 0.03740 3.99775 3.99775 1.46634 0.26236 1.09861 0.40547
8477 30 2.93046 3.56298 0.11991 3.46510 30 - -
8478 1.38629 1.38629 1.38629 1.38629
8479 0.03740 3.99775 3.99775 1.46634 0.26236 1.09861 0.40547
8480 31 3.40502 0.13361 3.45566 2.80851 31 - -
8481 1.38629 1.38629 1.38629 1.38629
8482 0.03740 3.99775 3.99775 1.46634 0.26236 1.09861 0.40547
8483 32 3.06409 2.57953 3.11318 0.18268 32 - -
8484 1.38629 1.38629 1.38629 1.38629
8485 0.03740 3.99775 3.99775 1.46634 0.26236 1.09861 0.40547
8486 33 2.93046 3.56298 0.11991 3.46510 33 - -
8487 1.38629 1.38629 1.38629 1.38629
8488 0.03740 3.99775 3.99775 1.46634 0.26236 1.09861 0.40547
8489 34 0.14515 3.35591 2.78608 3.25528 34 - -
8490 1.38629 1.38629 1.38629 1.38629
8491 0.03740 3.99775 3.99775 1.46634 0.26236 1.09861 0.40547
8492 35 0.14515 3.35591 2.78608 3.25528 35 - -
8493 1.38629 1.38629 1.38629 1.38629
8494 0.03740 3.99775 3.99775 1.46634 0.26236 1.09861 0.40547
8495 36 3.40502 0.13361 3.45566 2.80851 36 - -
8496 1.38629 1.38629 1.38629 1.38629
8497 0.03740 3.99775 3.99775 1.46634 0.26236 1.09861 0.40547
8498 37 3.06409 2.57953 3.11318 0.18268 37 - -
8499 1.38629 1.38629 1.38629 1.38629
8500 0.03740 3.99775 3.99775 1.46634 0.26236 1.09861 0.40547
8501 38 3.06409 2.57953 3.11318 0.18268 38 - -
8502 1.38629 1.38629 1.38629 1.38629
8503 0.03740 3.99775 3.99775 1.46634 0.26236 1.09861 0.40547
8504 39 0.14515 3.35591 2.78608 3.25528 39 - -
8505 1.38629 1.38629 1.38629 1.38629
8506 0.03740 3.99775 3.99775 1.46634 0.26236 1.09861 0.40547
8507 40 0.14515 3.35591 2.78608 3.25528 40 - -
8508 1.38629 1.38629 1.38629 1.38629
8509 0.03740 3.99775 3.99775 1.46634 0.26236 1.09861 0.40547
8510 41 2.93046 3.56298 0.11991 3.46510 41 - -
8511 1.38629 1.38629 1.38629 1.38629
8512 0.03740 3.99775 3.99775 1.46634 0.26236 1.09861 0.40547
8513 42 3.40502 0.13361 3.45566 2.80851 42 - -
8514 1.38629 1.38629 1.38629 1.38629
8515 0.03740 3.99775 3.99775 1.46634 0.26236 1.09861 0.40547
8516 43 0.14515 3.35591 2.78608 3.25528 43 - -
8517 1.38629 1.38629 1.38629 1.38629
8518 0.03740 3.99775 3.99775 1.46634 0.26236 1.09861 0.40547
8519 44 3.06409 2.57953 3.11318 0.18268 44 - -
8520 1.38629 1.38629 1.38629 1.38629
8521 0.03740 3.99775 3.99775 1.46634 0.26236 1.09861 0.40547
8522 45 0.14515 3.35591 2.78608 3.25528 45 - -
8523 1.38629 1.38629 1.38629 1.38629
8524 0.01888 3.97923 * 1.46634 0.26236 0.00000 *
8525 //
8526 HMMER3/b [3.0 | March 2010]
8527 NAME 4_LSU_Oomycota_4_LSU_start_fifteen_long
8528 LENG 45
8529 ALPH DNA
8530 RF no
8531 CS no
8532 MAP yes
8533 DATE Tue Jan 24 11:04:46 2012
8534 NSEQ 25
8535 EFFN 3.445435
8536 CKSUM 249567624
8537 STATS LOCAL MSV -7.6351 0.71932
8538 STATS LOCAL VITERBI -7.6909 0.71932
8539 STATS LOCAL FORWARD -4.1126 0.71932
8540 HMM A C G T
8541 m->m m->i m->d i->m i->i d->m d->d
8542 COMPO 1.14410 1.39240 1.64908 1.42385
8543 1.38629 1.38629 1.38629 1.38629
8544 0.03607 4.03343 4.03343 1.46634 0.26236 0.00000 *
8545 1 3.12765 2.61995 3.17430 0.17251 1 - -
8546 1.38629 1.38629 1.38629 1.38629
8547 0.03607 4.03343 4.03343 1.46634 0.26236 1.09861 0.40547
8548 2 3.12765 2.61995 3.17430 0.17251 2 - -
8549 1.38629 1.38629 1.38629 1.38629
8550 0.03607 4.03343 4.03343 1.46634 0.26236 1.09861 0.40547
8551 3 3.12765 2.61995 3.17430 0.17251 3 - -
8552 1.38629 1.38629 1.38629 1.38629
8553 0.03607 4.03343 4.03343 1.46634 0.26236 1.09861 0.40547
8554 4 2.97420 3.62668 0.11299 3.53543 4 - -
8555 1.38629 1.38629 1.38629 1.38629
8556 0.03607 4.03343 4.03343 1.46634 0.26236 1.09861 0.40547
8557 5 2.97420 3.62668 0.11299 3.53543 5 - -
8558 1.38629 1.38629 1.38629 1.38629
8559 0.03607 4.03343 4.03343 1.46634 0.26236 1.09861 0.40547
8560 6 0.13691 3.41877 2.82688 3.32411 6 - -
8561 1.38629 1.38629 1.38629 1.38629
8562 0.03607 4.03343 4.03343 1.46634 0.26236 1.09861 0.40547
8563 7 3.47743 0.12504 3.52498 2.86115 7 - -
8564 1.38629 1.38629 1.38629 1.38629
8565 0.03607 4.03343 4.03343 1.46634 0.26236 1.09861 0.40547
8566 8 3.47743 0.12504 3.52498 2.86115 8 - -
8567 1.38629 1.38629 1.38629 1.38629
8568 0.03607 4.03343 4.03343 1.46634 0.26236 1.09861 0.40547
8569 9 3.12765 2.61995 3.17430 0.17251 9 - -
8570 1.38629 1.38629 1.38629 1.38629
8571 0.03607 4.03343 4.03343 1.46634 0.26236 1.09861 0.40547
8572 10 2.97420 3.62668 0.11299 3.53543 10 - -
8573 1.38629 1.38629 1.38629 1.38629
8574 0.03607 4.03343 4.03343 1.46634 0.26236 1.09861 0.40547
8575 11 0.13691 3.41877 2.82688 3.32411 11 - -
8576 1.38629 1.38629 1.38629 1.38629
8577 0.03607 4.03343 4.03343 1.46634 0.26236 1.09861 0.40547
8578 12 3.12765 2.61995 3.17430 0.17251 12 - -
8579 1.38629 1.38629 1.38629 1.38629
8580 0.03607 4.03343 4.03343 1.46634 0.26236 1.09861 0.40547
8581 13 0.13691 3.41877 2.82688 3.32411 13 - -
8582 1.38629 1.38629 1.38629 1.38629
8583 0.03607 4.03343 4.03343 1.46634 0.26236 1.09861 0.40547
8584 14 3.12765 2.61995 3.17430 0.17251 14 - -
8585 1.38629 1.38629 1.38629 1.38629
8586 0.03607 4.03343 4.03343 1.46634 0.26236 1.09861 0.40547
8587 15 3.47743 0.12504 3.52498 2.86115 15 - -
8588 1.38629 1.38629 1.38629 1.38629
8589 0.03607 4.03343 4.03343 1.46634 0.26236 1.09861 0.40547
8590 16 0.13691 3.41877 2.82688 3.32411 16 - -
8591 1.38629 1.38629 1.38629 1.38629
8592 0.03607 4.03343 4.03343 1.46634 0.26236 1.09861 0.40547
8593 17 1.11991 2.58251 0.67175 2.43851 17 - -
8594 1.38629 1.38629 1.38629 1.38629
8595 0.03607 4.03343 4.03343 1.46634 0.26236 1.09861 0.40547
8596 18 0.13691 3.41877 2.82688 3.32411 18 - -
8597 1.38629 1.38629 1.38629 1.38629
8598 0.03607 4.03343 4.03343 1.46634 0.26236 1.09861 0.40547
8599 19 3.47743 0.12504 3.52498 2.86115 19 - -
8600 1.38629 1.38629 1.38629 1.38629
8601 0.03607 4.03343 4.03343 1.46634 0.26236 1.09861 0.40547
8602 20 0.13691 3.41877 2.82688 3.32411 20 - -
8603 1.38629 1.38629 1.38629 1.38629
8604 0.03607 4.03343 4.03343 1.46634 0.26236 1.09861 0.40547
8605 21 0.13691 3.41877 2.82688 3.32411 21 - -
8606 1.38629 1.38629 1.38629 1.38629
8607 0.03607 4.03343 4.03343 1.46634 0.26236 1.09861 0.40547
8608 22 2.97420 3.62668 0.11299 3.53543 22 - -
8609 1.38629 1.38629 1.38629 1.38629
8610 0.03607 4.03343 4.03343 1.46634 0.26236 1.09861 0.40547
8611 23 0.13691 3.41877 2.82688 3.32411 23 - -
8612 1.38629 1.38629 1.38629 1.38629
8613 0.03607 4.03343 4.03343 1.46634 0.26236 1.09861 0.40547
8614 24 3.14012 0.20787 3.19834 2.26738 24 - -
8615 1.38629 1.38629 1.38629 1.38629
8616 0.03607 4.03343 4.03343 1.46634 0.26236 1.09861 0.40547
8617 25 3.12765 2.61995 3.17430 0.17251 25 - -
8618 1.38629 1.38629 1.38629 1.38629
8619 0.03607 4.03343 4.03343 1.46634 0.26236 1.09861 0.40547
8620 26 0.13691 3.41877 2.82688 3.32411 26 - -
8621 1.38629 1.38629 1.38629 1.38629
8622 0.03607 4.03343 4.03343 1.46634 0.26236 1.09861 0.40547
8623 27 3.47743 0.12504 3.52498 2.86115 27 - -
8624 1.38629 1.38629 1.38629 1.38629
8625 0.03607 4.03343 4.03343 1.46634 0.26236 1.09861 0.40547
8626 28 3.47743 0.12504 3.52498 2.86115 28 - -
8627 1.38629 1.38629 1.38629 1.38629
8628 0.03607 4.03343 4.03343 1.46634 0.26236 1.09861 0.40547
8629 29 3.47743 0.12504 3.52498 2.86115 29 - -
8630 1.38629 1.38629 1.38629 1.38629
8631 0.03607 4.03343 4.03343 1.46634 0.26236 1.09861 0.40547
8632 30 2.97420 3.62668 0.11299 3.53543 30 - -
8633 1.38629 1.38629 1.38629 1.38629
8634 0.03607 4.03343 4.03343 1.46634 0.26236 1.09861 0.40547
8635 31 3.47743 0.12504 3.52498 2.86115 31 - -
8636 1.38629 1.38629 1.38629 1.38629
8637 0.03607 4.03343 4.03343 1.46634 0.26236 1.09861 0.40547
8638 32 3.12765 2.61995 3.17430 0.17251 32 - -
8639 1.38629 1.38629 1.38629 1.38629
8640 0.03607 4.03343 4.03343 1.46634 0.26236 1.09861 0.40547
8641 33 2.97420 3.62668 0.11299 3.53543 33 - -
8642 1.38629 1.38629 1.38629 1.38629
8643 0.03607 4.03343 4.03343 1.46634 0.26236 1.09861 0.40547
8644 34 0.13691 3.41877 2.82688 3.32411 34 - -
8645 1.38629 1.38629 1.38629 1.38629
8646 0.03607 4.03343 4.03343 1.46634 0.26236 1.09861 0.40547
8647 35 0.13691 3.41877 2.82688 3.32411 35 - -
8648 1.38629 1.38629 1.38629 1.38629
8649 0.03607 4.03343 4.03343 1.46634 0.26236 1.09861 0.40547
8650 36 3.47743 0.12504 3.52498 2.86115 36 - -
8651 1.38629 1.38629 1.38629 1.38629
8652 0.03607 4.03343 4.03343 1.46634 0.26236 1.09861 0.40547
8653 37 3.12765 2.61995 3.17430 0.17251 37 - -
8654 1.38629 1.38629 1.38629 1.38629
8655 0.03607 4.03343 4.03343 1.46634 0.26236 1.09861 0.40547
8656 38 3.12765 2.61995 3.17430 0.17251 38 - -
8657 1.38629 1.38629 1.38629 1.38629
8658 0.03607 4.03343 4.03343 1.46634 0.26236 1.09861 0.40547
8659 39 0.13691 3.41877 2.82688 3.32411 39 - -
8660 1.38629 1.38629 1.38629 1.38629
8661 0.03607 4.03343 4.03343 1.46634 0.26236 1.09861 0.40547
8662 40 0.13691 3.41877 2.82688 3.32411 40 - -
8663 1.38629 1.38629 1.38629 1.38629
8664 0.03607 4.03343 4.03343 1.46634 0.26236 1.09861 0.40547
8665 41 2.97420 3.62668 0.11299 3.53543 41 - -
8666 1.38629 1.38629 1.38629 1.38629
8667 0.03607 4.03343 4.03343 1.46634 0.26236 1.09861 0.40547
8668 42 3.47743 0.12504 3.52498 2.86115 42 - -
8669 1.38629 1.38629 1.38629 1.38629
8670 0.03607 4.03343 4.03343 1.46634 0.26236 1.09861 0.40547
8671 43 3.12765 2.61995 3.17430 0.17251 43 - -
8672 1.38629 1.38629 1.38629 1.38629
8673 0.03607 4.03343 4.03343 1.46634 0.26236 1.09861 0.40547
8674 44 0.13691 3.41877 2.82688 3.32411 44 - -
8675 1.38629 1.38629 1.38629 1.38629
8676 0.03607 4.03343 4.03343 1.46634 0.26236 1.09861 0.40547
8677 45 0.13691 3.41877 2.82688 3.32411 45 - -
8678 1.38629 1.38629 1.38629 1.38629
8679 0.01820 4.01556 * 1.46634 0.26236 0.00000 *
8680 //
8681 HMMER3/b [3.0 | March 2010]
8682 NAME 4_LSU_Oomycota_4_LSU_start_five_long
8683 LENG 45
8684 ALPH DNA
8685 RF no
8686 CS no
8687 MAP yes
8688 DATE Tue Jan 24 11:03:08 2012
8689 NSEQ 195
8690 EFFN 3.406906
8691 CKSUM 2842362898
8692 STATS LOCAL MSV -7.4635 0.71931
8693 STATS LOCAL VITERBI -7.6657 0.71931
8694 STATS LOCAL FORWARD -4.1200 0.71931
8695 HMM A C G T
8696 m->m m->i m->d i->m i->i d->m d->d
8697 COMPO 1.15800 1.44691 1.51902 1.46247
8698 1.38629 1.38629 1.38629 1.38629
8699 0.03632 4.02658 4.02658 1.46634 0.26236 0.00000 *
8700 1 0.15762 3.33365 2.64821 3.23445 1 - -
8701 1.38629 1.38629 1.38629 1.38629
8702 0.03632 4.02658 4.02658 1.46634 0.26236 1.09861 0.40547
8703 2 3.06219 2.47949 3.11116 0.19252 2 - -
8704 1.38629 1.38629 1.38629 1.38629
8705 0.03632 4.02658 4.02658 1.46634 0.26236 1.09861 0.40547
8706 3 3.11553 2.61225 3.16265 0.17440 3 - -
8707 1.38629 1.38629 1.38629 1.38629
8708 0.03632 4.02658 4.02658 1.46634 0.26236 1.09861 0.40547
8709 4 2.96599 3.61467 0.11426 3.52215 4 - -
8710 1.38629 1.38629 1.38629 1.38629
8711 0.03632 4.02658 4.02658 1.46634 0.26236 1.09861 0.40547
8712 5 2.96599 3.61467 0.11426 3.52215 5 - -
8713 1.38629 1.38629 1.38629 1.38629
8714 0.03632 4.02658 4.02658 1.46634 0.26236 1.09861 0.40547
8715 6 0.13843 3.40685 2.81917 3.31105 6 - -
8716 1.38629 1.38629 1.38629 1.38629
8717 0.03632 4.02658 4.02658 1.46634 0.26236 1.09861 0.40547
8718 7 3.46372 0.12661 3.51187 2.85123 7 - -
8719 1.38629 1.38629 1.38629 1.38629
8720 0.03632 4.02658 4.02658 1.46634 0.26236 1.09861 0.40547
8721 8 3.46372 0.12661 3.51187 2.85123 8 - -
8722 1.38629 1.38629 1.38629 1.38629
8723 0.03632 4.02658 4.02658 1.46634 0.26236 1.09861 0.40547
8724 9 3.11553 2.61225 3.16265 0.17440 9 - -
8725 1.38629 1.38629 1.38629 1.38629
8726 0.03632 4.02658 4.02658 1.46634 0.26236 1.09861 0.40547
8727 10 2.96599 3.61467 0.11426 3.52215 10 - -
8728 1.38629 1.38629 1.38629 1.38629
8729 0.03632 4.02658 4.02658 1.46634 0.26236 1.09861 0.40547
8730 11 0.13843 3.40685 2.81917 3.31105 11 - -
8731 1.38629 1.38629 1.38629 1.38629
8732 0.03632 4.02658 4.02658 1.46634 0.26236 1.09861 0.40547
8733 12 3.11553 2.61225 3.16265 0.17440 12 - -
8734 1.38629 1.38629 1.38629 1.38629
8735 0.03632 4.02658 4.02658 1.46634 0.26236 1.09861 0.40547
8736 13 0.13843 3.40685 2.81917 3.31105 13 - -
8737 1.38629 1.38629 1.38629 1.38629
8738 0.03632 4.02658 4.02658 1.46634 0.26236 1.09861 0.40547
8739 14 3.11553 2.61225 3.16265 0.17440 14 - -
8740 1.38629 1.38629 1.38629 1.38629
8741 0.03632 4.02658 4.02658 1.46634 0.26236 1.09861 0.40547
8742 15 3.46372 0.12661 3.51187 2.85123 15 - -
8743 1.38629 1.38629 1.38629 1.38629
8744 0.03632 4.02658 4.02658 1.46634 0.26236 1.09861 0.40547
8745 16 0.13843 3.40685 2.81917 3.31105 16 - -
8746 1.38629 1.38629 1.38629 1.38629
8747 0.03632 4.02658 4.02658 1.46634 0.26236 1.09861 0.40547
8748 17 2.96599 3.61467 0.11426 3.52215 17 - -
8749 1.38629 1.38629 1.38629 1.38629
8750 0.03632 4.02658 4.02658 1.46634 0.26236 1.09861 0.40547
8751 18 2.96599 3.61467 0.11426 3.52215 18 - -
8752 1.38629 1.38629 1.38629 1.38629
8753 0.03632 4.02658 4.02658 1.46634 0.26236 1.09861 0.40547
8754 19 3.34656 0.15194 3.39831 2.62661 19 - -
8755 1.38629 1.38629 1.38629 1.38629
8756 0.03632 4.02658 4.02658 1.46634 0.26236 1.09861 0.40547
8757 20 0.13843 3.40685 2.81917 3.31105 20 - -
8758 1.38629 1.38629 1.38629 1.38629
8759 0.03632 4.02658 4.02658 1.46634 0.26236 1.09861 0.40547
8760 21 0.13843 3.40685 2.81917 3.31105 21 - -
8761 1.38629 1.38629 1.38629 1.38629
8762 0.03632 4.02658 4.02658 1.46634 0.26236 1.09861 0.40547
8763 22 2.96599 3.61467 0.11426 3.52215 22 - -
8764 1.38629 1.38629 1.38629 1.38629
8765 0.03632 4.02658 4.02658 1.46634 0.26236 1.09861 0.40547
8766 23 0.13843 3.40685 2.81917 3.31105 23 - -
8767 1.38629 1.38629 1.38629 1.38629
8768 0.03632 4.02658 4.02658 1.46634 0.26236 1.09861 0.40547
8769 24 2.47249 1.22404 2.54227 0.61083 24 - -
8770 1.38629 1.38629 1.38629 1.38629
8771 0.03632 4.02658 4.02658 1.46634 0.26236 1.09861 0.40547
8772 25 3.11553 2.61225 3.16265 0.17440 25 - -
8773 1.38629 1.38629 1.38629 1.38629
8774 0.03632 4.02658 4.02658 1.46634 0.26236 1.09861 0.40547
8775 26 0.13843 3.40685 2.81917 3.31105 26 - -
8776 1.38629 1.38629 1.38629 1.38629
8777 0.03632 4.02658 4.02658 1.46634 0.26236 1.09861 0.40547
8778 27 3.46372 0.12661 3.51187 2.85123 27 - -
8779 1.38629 1.38629 1.38629 1.38629
8780 0.03632 4.02658 4.02658 1.46634 0.26236 1.09861 0.40547
8781 28 3.46372 0.12661 3.51187 2.85123 28 - -
8782 1.38629 1.38629 1.38629 1.38629
8783 0.03632 4.02658 4.02658 1.46634 0.26236 1.09861 0.40547
8784 29 3.46372 0.12661 3.51187 2.85123 29 - -
8785 1.38629 1.38629 1.38629 1.38629
8786 0.03632 4.02658 4.02658 1.46634 0.26236 1.09861 0.40547
8787 30 2.96599 3.61467 0.11426 3.52215 30 - -
8788 1.38629 1.38629 1.38629 1.38629
8789 0.03632 4.02658 4.02658 1.46634 0.26236 1.09861 0.40547
8790 31 3.46372 0.12661 3.51187 2.85123 31 - -
8791 1.38629 1.38629 1.38629 1.38629
8792 0.03632 4.02658 4.02658 1.46634 0.26236 1.09861 0.40547
8793 32 3.11553 2.61225 3.16265 0.17440 32 - -
8794 1.38629 1.38629 1.38629 1.38629
8795 0.03632 4.02658 4.02658 1.46634 0.26236 1.09861 0.40547
8796 33 2.96599 3.61467 0.11426 3.52215 33 - -
8797 1.38629 1.38629 1.38629 1.38629
8798 0.03632 4.02658 4.02658 1.46634 0.26236 1.09861 0.40547
8799 34 0.13843 3.40685 2.81917 3.31105 34 - -
8800 1.38629 1.38629 1.38629 1.38629
8801 0.03632 4.02658 4.02658 1.46634 0.26236 1.09861 0.40547
8802 35 0.13843 3.40685 2.81917 3.31105 35 - -
8803 1.38629 1.38629 1.38629 1.38629
8804 0.03632 4.02658 4.02658 1.46634 0.26236 1.09861 0.40547
8805 36 3.36436 0.14788 3.41555 2.65887 36 - -
8806 1.38629 1.38629 1.38629 1.38629
8807 0.03632 4.02658 4.02658 1.46634 0.26236 1.09861 0.40547
8808 37 3.11553 2.61225 3.16265 0.17440 37 - -
8809 1.38629 1.38629 1.38629 1.38629
8810 0.03632 4.02658 4.02658 1.46634 0.26236 1.09861 0.40547
8811 38 3.11553 2.61225 3.16265 0.17440 38 - -
8812 1.38629 1.38629 1.38629 1.38629
8813 0.03632 4.02658 4.02658 1.46634 0.26236 1.09861 0.40547
8814 39 0.13843 3.40685 2.81917 3.31105 39 - -
8815 1.38629 1.38629 1.38629 1.38629
8816 0.03632 4.02658 4.02658 1.46634 0.26236 1.09861 0.40547
8817 40 0.13843 3.40685 2.81917 3.31105 40 - -
8818 1.38629 1.38629 1.38629 1.38629
8819 0.03632 4.02658 4.02658 1.46634 0.26236 1.09861 0.40547
8820 41 2.96599 3.61467 0.11426 3.52215 41 - -
8821 1.38629 1.38629 1.38629 1.38629
8822 0.03632 4.02658 4.02658 1.46634 0.26236 1.09861 0.40547
8823 42 3.46372 0.12661 3.51187 2.85123 42 - -
8824 1.38629 1.38629 1.38629 1.38629
8825 0.03632 4.02658 4.02658 1.46634 0.26236 1.09861 0.40547
8826 43 0.13843 3.40685 2.81917 3.31105 43 - -
8827 1.38629 1.38629 1.38629 1.38629
8828 0.03632 4.02658 4.02658 1.46634 0.26236 1.09861 0.40547
8829 44 3.11553 2.61225 3.16265 0.17440 44 - -
8830 1.38629 1.38629 1.38629 1.38629
8831 0.03632 4.02658 4.02658 1.46634 0.26236 1.09861 0.40547
8832 45 0.13843 3.40685 2.81917 3.31105 45 - -
8833 1.38629 1.38629 1.38629 1.38629
8834 0.01833 4.00859 * 1.46634 0.26236 0.00000 *
8835 //
8836 HMMER3/b [3.0 | March 2010]
8837 NAME 4_LSU_Oomycota_4_LSU_start_four_long
8838 LENG 45
8839 ALPH DNA
8840 RF no
8841 CS no
8842 MAP yes
8843 DATE Tue Jan 24 11:02:57 2012
8844 NSEQ 31
8845 EFFN 3.424683
8846 CKSUM 287374859
8847 STATS LOCAL MSV -7.5220 0.71933
8848 STATS LOCAL VITERBI -7.5970 0.71933
8849 STATS LOCAL FORWARD -4.1177 0.71933
8850 HMM A C G T
8851 m->m m->i m->d i->m i->i d->m d->d
8852 COMPO 1.12153 1.40210 1.60169 1.48464
8853 1.38629 1.38629 1.38629 1.38629
8854 0.03621 4.02975 4.02975 1.46634 0.26236 0.00000 *
8855 1 0.44098 2.50108 2.35237 1.71785 1 - -
8856 1.38629 1.38629 1.38629 1.38629
8857 0.03621 4.02975 4.02975 1.46634 0.26236 1.09861 0.40547
8858 2 3.12114 2.61581 3.16804 0.17352 2 - -
8859 1.38629 1.38629 1.38629 1.38629
8860 0.03621 4.02975 4.02975 1.46634 0.26236 1.09861 0.40547
8861 3 3.12114 2.61581 3.16804 0.17352 3 - -
8862 1.38629 1.38629 1.38629 1.38629
8863 0.03621 4.02975 4.02975 1.46634 0.26236 1.09861 0.40547
8864 4 2.96979 3.62023 0.11367 3.52830 4 - -
8865 1.38629 1.38629 1.38629 1.38629
8866 0.03621 4.02975 4.02975 1.46634 0.26236 1.09861 0.40547
8867 5 2.96979 3.62023 0.11367 3.52830 5 - -
8868 1.38629 1.38629 1.38629 1.38629
8869 0.03621 4.02975 4.02975 1.46634 0.26236 1.09861 0.40547
8870 6 0.13773 3.41237 2.82274 3.31709 6 - -
8871 1.38629 1.38629 1.38629 1.38629
8872 0.03621 4.02975 4.02975 1.46634 0.26236 1.09861 0.40547
8873 7 3.47007 0.12588 3.51795 2.85583 7 - -
8874 1.38629 1.38629 1.38629 1.38629
8875 0.03621 4.02975 4.02975 1.46634 0.26236 1.09861 0.40547
8876 8 3.47007 0.12588 3.51795 2.85583 8 - -
8877 1.38629 1.38629 1.38629 1.38629
8878 0.03621 4.02975 4.02975 1.46634 0.26236 1.09861 0.40547
8879 9 3.12114 2.61581 3.16804 0.17352 9 - -
8880 1.38629 1.38629 1.38629 1.38629
8881 0.03621 4.02975 4.02975 1.46634 0.26236 1.09861 0.40547
8882 10 2.96979 3.62023 0.11367 3.52830 10 - -
8883 1.38629 1.38629 1.38629 1.38629
8884 0.03621 4.02975 4.02975 1.46634 0.26236 1.09861 0.40547
8885 11 0.13773 3.41237 2.82274 3.31709 11 - -
8886 1.38629 1.38629 1.38629 1.38629
8887 0.03621 4.02975 4.02975 1.46634 0.26236 1.09861 0.40547
8888 12 3.12114 2.61581 3.16804 0.17352 12 - -
8889 1.38629 1.38629 1.38629 1.38629
8890 0.03621 4.02975 4.02975 1.46634 0.26236 1.09861 0.40547
8891 13 0.13773 3.41237 2.82274 3.31709 13 - -
8892 1.38629 1.38629 1.38629 1.38629
8893 0.03621 4.02975 4.02975 1.46634 0.26236 1.09861 0.40547
8894 14 3.12114 2.61581 3.16804 0.17352 14 - -
8895 1.38629 1.38629 1.38629 1.38629
8896 0.03621 4.02975 4.02975 1.46634 0.26236 1.09861 0.40547
8897 15 3.47007 0.12588 3.51795 2.85583 15 - -
8898 1.38629 1.38629 1.38629 1.38629
8899 0.03621 4.02975 4.02975 1.46634 0.26236 1.09861 0.40547
8900 16 0.13773 3.41237 2.82274 3.31709 16 - -
8901 1.38629 1.38629 1.38629 1.38629
8902 0.03621 4.02975 4.02975 1.46634 0.26236 1.09861 0.40547
8903 17 2.96979 3.62023 0.11367 3.52830 17 - -
8904 1.38629 1.38629 1.38629 1.38629
8905 0.03621 4.02975 4.02975 1.46634 0.26236 1.09861 0.40547
8906 18 0.13773 3.41237 2.82274 3.31709 18 - -
8907 1.38629 1.38629 1.38629 1.38629
8908 0.03621 4.02975 4.02975 1.46634 0.26236 1.09861 0.40547
8909 19 3.47007 0.12588 3.51795 2.85583 19 - -
8910 1.38629 1.38629 1.38629 1.38629
8911 0.03621 4.02975 4.02975 1.46634 0.26236 1.09861 0.40547
8912 20 0.13773 3.41237 2.82274 3.31709 20 - -
8913 1.38629 1.38629 1.38629 1.38629
8914 0.03621 4.02975 4.02975 1.46634 0.26236 1.09861 0.40547
8915 21 0.13773 3.41237 2.82274 3.31709 21 - -
8916 1.38629 1.38629 1.38629 1.38629
8917 0.03621 4.02975 4.02975 1.46634 0.26236 1.09861 0.40547
8918 22 2.96979 3.62023 0.11367 3.52830 22 - -
8919 1.38629 1.38629 1.38629 1.38629
8920 0.03621 4.02975 4.02975 1.46634 0.26236 1.09861 0.40547
8921 23 0.13773 3.41237 2.82274 3.31709 23 - -
8922 1.38629 1.38629 1.38629 1.38629
8923 0.03621 4.02975 4.02975 1.46634 0.26236 1.09861 0.40547
8924 24 2.87262 0.30798 2.93783 1.86084 24 - -
8925 1.38629 1.38629 1.38629 1.38629
8926 0.03621 4.02975 4.02975 1.46634 0.26236 1.09861 0.40547
8927 25 3.12114 2.61581 3.16804 0.17352 25 - -
8928 1.38629 1.38629 1.38629 1.38629
8929 0.03621 4.02975 4.02975 1.46634 0.26236 1.09861 0.40547
8930 26 0.13773 3.41237 2.82274 3.31709 26 - -
8931 1.38629 1.38629 1.38629 1.38629
8932 0.03621 4.02975 4.02975 1.46634 0.26236 1.09861 0.40547
8933 27 3.47007 0.12588 3.51795 2.85583 27 - -
8934 1.38629 1.38629 1.38629 1.38629
8935 0.03621 4.02975 4.02975 1.46634 0.26236 1.09861 0.40547
8936 28 3.47007 0.12588 3.51795 2.85583 28 - -
8937 1.38629 1.38629 1.38629 1.38629
8938 0.03621 4.02975 4.02975 1.46634 0.26236 1.09861 0.40547
8939 29 3.47007 0.12588 3.51795 2.85583 29 - -
8940 1.38629 1.38629 1.38629 1.38629
8941 0.03621 4.02975 4.02975 1.46634 0.26236 1.09861 0.40547
8942 30 2.96979 3.62023 0.11367 3.52830 30 - -
8943 1.38629 1.38629 1.38629 1.38629
8944 0.03621 4.02975 4.02975 1.46634 0.26236 1.09861 0.40547
8945 31 3.47007 0.12588 3.51795 2.85583 31 - -
8946 1.38629 1.38629 1.38629 1.38629
8947 0.03621 4.02975 4.02975 1.46634 0.26236 1.09861 0.40547
8948 32 3.12114 2.61581 3.16804 0.17352 32 - -
8949 1.38629 1.38629 1.38629 1.38629
8950 0.03621 4.02975 4.02975 1.46634 0.26236 1.09861 0.40547
8951 33 2.96979 3.62023 0.11367 3.52830 33 - -
8952 1.38629 1.38629 1.38629 1.38629
8953 0.03621 4.02975 4.02975 1.46634 0.26236 1.09861 0.40547
8954 34 0.13773 3.41237 2.82274 3.31709 34 - -
8955 1.38629 1.38629 1.38629 1.38629
8956 0.03621 4.02975 4.02975 1.46634 0.26236 1.09861 0.40547
8957 35 0.13773 3.41237 2.82274 3.31709 35 - -
8958 1.38629 1.38629 1.38629 1.38629
8959 0.03621 4.02975 4.02975 1.46634 0.26236 1.09861 0.40547
8960 36 3.47007 0.12588 3.51795 2.85583 36 - -
8961 1.38629 1.38629 1.38629 1.38629
8962 0.03621 4.02975 4.02975 1.46634 0.26236 1.09861 0.40547
8963 37 3.12114 2.61581 3.16804 0.17352 37 - -
8964 1.38629 1.38629 1.38629 1.38629
8965 0.03621 4.02975 4.02975 1.46634 0.26236 1.09861 0.40547
8966 38 3.12114 2.61581 3.16804 0.17352 38 - -
8967 1.38629 1.38629 1.38629 1.38629
8968 0.03621 4.02975 4.02975 1.46634 0.26236 1.09861 0.40547
8969 39 0.13773 3.41237 2.82274 3.31709 39 - -
8970 1.38629 1.38629 1.38629 1.38629
8971 0.03621 4.02975 4.02975 1.46634 0.26236 1.09861 0.40547
8972 40 0.13773 3.41237 2.82274 3.31709 40 - -
8973 1.38629 1.38629 1.38629 1.38629
8974 0.03621 4.02975 4.02975 1.46634 0.26236 1.09861 0.40547
8975 41 2.96979 3.62023 0.11367 3.52830 41 - -
8976 1.38629 1.38629 1.38629 1.38629
8977 0.03621 4.02975 4.02975 1.46634 0.26236 1.09861 0.40547
8978 42 3.47007 0.12588 3.51795 2.85583 42 - -
8979 1.38629 1.38629 1.38629 1.38629
8980 0.03621 4.02975 4.02975 1.46634 0.26236 1.09861 0.40547
8981 43 0.13773 3.41237 2.82274 3.31709 43 - -
8982 1.38629 1.38629 1.38629 1.38629
8983 0.03621 4.02975 4.02975 1.46634 0.26236 1.09861 0.40547
8984 44 3.12114 2.61581 3.16804 0.17352 44 - -
8985 1.38629 1.38629 1.38629 1.38629
8986 0.03621 4.02975 4.02975 1.46634 0.26236 1.09861 0.40547
8987 45 0.13773 3.41237 2.82274 3.31709 45 - -
8988 1.38629 1.38629 1.38629 1.38629
8989 0.01827 4.01181 * 1.46634 0.26236 0.00000 *
8990 //
8991 HMMER3/b [3.0 | March 2010]
8992 NAME 4_LSU_Oomycota_4_LSU_start_fourteen_long
8993 LENG 45
8994 ALPH DNA
8995 RF no
8996 CS no
8997 MAP yes
8998 DATE Tue Jan 24 11:04:36 2012
8999 NSEQ 25
9000 EFFN 3.244019
9001 CKSUM 208310769
9002 STATS LOCAL MSV -8.0010 0.71932
9003 STATS LOCAL VITERBI -7.6179 0.71932
9004 STATS LOCAL FORWARD -4.1225 0.71932
9005 HMM A C G T
9006 m->m m->i m->d i->m i->i d->m d->d
9007 COMPO 1.16320 1.39502 1.52277 1.50697
9008 1.38629 1.38629 1.38629 1.38629
9009 0.03743 3.99710 3.99710 1.46634 0.26236 0.00000 *
9010 1 0.14531 3.35475 2.78532 3.25400 1 - -
9011 1.38629 1.38629 1.38629 1.38629
9012 0.03743 3.99710 3.99710 1.46634 0.26236 1.09861 0.40547
9013 2 3.06292 2.57879 3.11206 0.18287 2 - -
9014 1.38629 1.38629 1.38629 1.38629
9015 0.03743 3.99710 3.99710 1.46634 0.26236 1.09861 0.40547
9016 3 3.06292 2.57879 3.11206 0.18287 3 - -
9017 1.38629 1.38629 1.38629 1.38629
9018 0.03743 3.99710 3.99710 1.46634 0.26236 1.09861 0.40547
9019 4 2.92964 3.56180 0.12004 3.46379 4 - -
9020 1.38629 1.38629 1.38629 1.38629
9021 0.03743 3.99710 3.99710 1.46634 0.26236 1.09861 0.40547
9022 5 2.92964 3.56180 0.12004 3.46379 5 - -
9023 1.38629 1.38629 1.38629 1.38629
9024 0.03743 3.99710 3.99710 1.46634 0.26236 1.09861 0.40547
9025 6 0.14531 3.35475 2.78532 3.25400 6 - -
9026 1.38629 1.38629 1.38629 1.38629
9027 0.03743 3.99710 3.99710 1.46634 0.26236 1.09861 0.40547
9028 7 3.40368 0.13377 3.45438 2.80752 7 - -
9029 1.38629 1.38629 1.38629 1.38629
9030 0.03743 3.99710 3.99710 1.46634 0.26236 1.09861 0.40547
9031 8 3.40368 0.13377 3.45438 2.80752 8 - -
9032 1.38629 1.38629 1.38629 1.38629
9033 0.03743 3.99710 3.99710 1.46634 0.26236 1.09861 0.40547
9034 9 3.06292 2.57879 3.11206 0.18287 9 - -
9035 1.38629 1.38629 1.38629 1.38629
9036 0.03743 3.99710 3.99710 1.46634 0.26236 1.09861 0.40547
9037 10 2.92964 3.56180 0.12004 3.46379 10 - -
9038 1.38629 1.38629 1.38629 1.38629
9039 0.03743 3.99710 3.99710 1.46634 0.26236 1.09861 0.40547
9040 11 0.14531 3.35475 2.78532 3.25400 11 - -
9041 1.38629 1.38629 1.38629 1.38629
9042 0.03743 3.99710 3.99710 1.46634 0.26236 1.09861 0.40547
9043 12 3.06292 2.57879 3.11206 0.18287 12 - -
9044 1.38629 1.38629 1.38629 1.38629
9045 0.03743 3.99710 3.99710 1.46634 0.26236 1.09861 0.40547
9046 13 0.14531 3.35475 2.78532 3.25400 13 - -
9047 1.38629 1.38629 1.38629 1.38629
9048 0.03743 3.99710 3.99710 1.46634 0.26236 1.09861 0.40547
9049 14 3.06292 2.57879 3.11206 0.18287 14 - -
9050 1.38629 1.38629 1.38629 1.38629
9051 0.03743 3.99710 3.99710 1.46634 0.26236 1.09861 0.40547
9052 15 3.40368 0.13377 3.45438 2.80752 15 - -
9053 1.38629 1.38629 1.38629 1.38629
9054 0.03743 3.99710 3.99710 1.46634 0.26236 1.09861 0.40547
9055 16 0.14531 3.35475 2.78532 3.25400 16 - -
9056 1.38629 1.38629 1.38629 1.38629
9057 0.03743 3.99710 3.99710 1.46634 0.26236 1.09861 0.40547
9058 17 2.92964 3.56180 0.12004 3.46379 17 - -
9059 1.38629 1.38629 1.38629 1.38629
9060 0.03743 3.99710 3.99710 1.46634 0.26236 1.09861 0.40547
9061 18 2.92964 3.56180 0.12004 3.46379 18 - -
9062 1.38629 1.38629 1.38629 1.38629
9063 0.03743 3.99710 3.99710 1.46634 0.26236 1.09861 0.40547
9064 19 3.40368 0.13377 3.45438 2.80752 19 - -
9065 1.38629 1.38629 1.38629 1.38629
9066 0.03743 3.99710 3.99710 1.46634 0.26236 1.09861 0.40547
9067 20 0.14531 3.35475 2.78532 3.25400 20 - -
9068 1.38629 1.38629 1.38629 1.38629
9069 0.03743 3.99710 3.99710 1.46634 0.26236 1.09861 0.40547
9070 21 0.14531 3.35475 2.78532 3.25400 21 - -
9071 1.38629 1.38629 1.38629 1.38629
9072 0.03743 3.99710 3.99710 1.46634 0.26236 1.09861 0.40547
9073 22 2.92964 3.56180 0.12004 3.46379 22 - -
9074 1.38629 1.38629 1.38629 1.38629
9075 0.03743 3.99710 3.99710 1.46634 0.26236 1.09861 0.40547
9076 23 0.14531 3.35475 2.78532 3.25400 23 - -
9077 1.38629 1.38629 1.38629 1.38629
9078 0.03743 3.99710 3.99710 1.46634 0.26236 1.09861 0.40547
9079 24 3.06292 2.57879 3.11206 0.18287 24 - -
9080 1.38629 1.38629 1.38629 1.38629
9081 0.03743 3.99710 3.99710 1.46634 0.26236 1.09861 0.40547
9082 25 3.06292 2.57879 3.11206 0.18287 25 - -
9083 1.38629 1.38629 1.38629 1.38629
9084 0.03743 3.99710 3.99710 1.46634 0.26236 1.09861 0.40547
9085 26 0.14531 3.35475 2.78532 3.25400 26 - -
9086 1.38629 1.38629 1.38629 1.38629
9087 0.03743 3.99710 3.99710 1.46634 0.26236 1.09861 0.40547
9088 27 3.40368 0.13377 3.45438 2.80752 27 - -
9089 1.38629 1.38629 1.38629 1.38629
9090 0.03743 3.99710 3.99710 1.46634 0.26236 1.09861 0.40547
9091 28 3.40368 0.13377 3.45438 2.80752 28 - -
9092 1.38629 1.38629 1.38629 1.38629
9093 0.03743 3.99710 3.99710 1.46634 0.26236 1.09861 0.40547
9094 29 3.40368 0.13377 3.45438 2.80752 29 - -
9095 1.38629 1.38629 1.38629 1.38629
9096 0.03743 3.99710 3.99710 1.46634 0.26236 1.09861 0.40547
9097 30 2.92964 3.56180 0.12004 3.46379 30 - -
9098 1.38629 1.38629 1.38629 1.38629
9099 0.03743 3.99710 3.99710 1.46634 0.26236 1.09861 0.40547
9100 31 3.40368 0.13377 3.45438 2.80752 31 - -
9101 1.38629 1.38629 1.38629 1.38629
9102 0.03743 3.99710 3.99710 1.46634 0.26236 1.09861 0.40547
9103 32 3.06292 2.57879 3.11206 0.18287 32 - -
9104 1.38629 1.38629 1.38629 1.38629
9105 0.03743 3.99710 3.99710 1.46634 0.26236 1.09861 0.40547
9106 33 2.92964 3.56180 0.12004 3.46379 33 - -
9107 1.38629 1.38629 1.38629 1.38629
9108 0.03743 3.99710 3.99710 1.46634 0.26236 1.09861 0.40547
9109 34 0.14531 3.35475 2.78532 3.25400 34 - -
9110 1.38629 1.38629 1.38629 1.38629
9111 0.03743 3.99710 3.99710 1.46634 0.26236 1.09861 0.40547
9112 35 0.14531 3.35475 2.78532 3.25400 35 - -
9113 1.38629 1.38629 1.38629 1.38629
9114 0.03743 3.99710 3.99710 1.46634 0.26236 1.09861 0.40547
9115 36 3.40368 0.13377 3.45438 2.80752 36 - -
9116 1.38629 1.38629 1.38629 1.38629
9117 0.03743 3.99710 3.99710 1.46634 0.26236 1.09861 0.40547
9118 37 3.06292 2.57879 3.11206 0.18287 37 - -
9119 1.38629 1.38629 1.38629 1.38629
9120 0.03743 3.99710 3.99710 1.46634 0.26236 1.09861 0.40547
9121 38 3.06292 2.57879 3.11206 0.18287 38 - -
9122 1.38629 1.38629 1.38629 1.38629
9123 0.03743 3.99710 3.99710 1.46634 0.26236 1.09861 0.40547
9124 39 0.14531 3.35475 2.78532 3.25400 39 - -
9125 1.38629 1.38629 1.38629 1.38629
9126 0.03743 3.99710 3.99710 1.46634 0.26236 1.09861 0.40547
9127 40 0.14531 3.35475 2.78532 3.25400 40 - -
9128 1.38629 1.38629 1.38629 1.38629
9129 0.03743 3.99710 3.99710 1.46634 0.26236 1.09861 0.40547
9130 41 2.92964 3.56180 0.12004 3.46379 41 - -
9131 1.38629 1.38629 1.38629 1.38629
9132 0.03743 3.99710 3.99710 1.46634 0.26236 1.09861 0.40547
9133 42 3.40368 0.13377 3.45438 2.80752 42 - -
9134 1.38629 1.38629 1.38629 1.38629
9135 0.03743 3.99710 3.99710 1.46634 0.26236 1.09861 0.40547
9136 43 0.14531 3.35475 2.78532 3.25400 43 - -
9137 1.38629 1.38629 1.38629 1.38629
9138 0.03743 3.99710 3.99710 1.46634 0.26236 1.09861 0.40547
9139 44 0.14531 3.35475 2.78532 3.25400 44 - -
9140 1.38629 1.38629 1.38629 1.38629
9141 0.03743 3.99710 3.99710 1.46634 0.26236 1.09861 0.40547
9142 45 3.40368 0.13377 3.45438 2.80752 45 - -
9143 1.38629 1.38629 1.38629 1.38629
9144 0.01889 3.97856 * 1.46634 0.26236 0.00000 *
9145 //
9146 HMMER3/b [3.0 | March 2010]
9147 NAME 4_LSU_Oomycota_4_LSU_start_nine_long
9148 LENG 45
9149 ALPH DNA
9150 RF no
9151 CS no
9152 MAP yes
9153 DATE Tue Jan 24 11:03:40 2012
9154 NSEQ 19
9155 EFFN 3.251709
9156 CKSUM 1100350994
9157 STATS LOCAL MSV -7.8849 0.71932
9158 STATS LOCAL VITERBI -7.6655 0.71932
9159 STATS LOCAL FORWARD -3.9906 0.71932
9160 HMM A C G T
9161 m->m m->i m->d i->m i->i d->m d->d
9162 COMPO 1.10878 1.46608 1.52006 1.51180
9163 1.38629 1.38629 1.38629 1.38629
9164 0.03738 3.99851 3.99851 1.46634 0.26236 0.00000 *
9165 1 0.14497 3.35727 2.78696 3.25677 1 - -
9166 1.38629 1.38629 1.38629 1.38629
9167 0.03738 3.99851 3.99851 1.46634 0.26236 1.09861 0.40547
9168 2 0.14497 3.35727 2.78696 3.25677 2 - -
9169 1.38629 1.38629 1.38629 1.38629
9170 0.03738 3.99851 3.99851 1.46634 0.26236 1.09861 0.40547
9171 3 3.40659 0.13342 3.45717 2.80965 3 - -
9172 1.38629 1.38629 1.38629 1.38629
9173 0.03738 3.99851 3.99851 1.46634 0.26236 1.09861 0.40547
9174 4 2.93142 3.56437 0.11975 3.46663 4 - -
9175 1.38629 1.38629 1.38629 1.38629
9176 0.03738 3.99851 3.99851 1.46634 0.26236 1.09861 0.40547
9177 5 2.93142 3.56437 0.11975 3.46663 5 - -
9178 1.38629 1.38629 1.38629 1.38629
9179 0.03738 3.99851 3.99851 1.46634 0.26236 1.09861 0.40547
9180 6 0.14497 3.35727 2.78696 3.25677 6 - -
9181 1.38629 1.38629 1.38629 1.38629
9182 0.03738 3.99851 3.99851 1.46634 0.26236 1.09861 0.40547
9183 7 3.40659 0.13342 3.45717 2.80965 7 - -
9184 1.38629 1.38629 1.38629 1.38629
9185 0.03738 3.99851 3.99851 1.46634 0.26236 1.09861 0.40547
9186 8 3.40659 0.13342 3.45717 2.80965 8 - -
9187 1.38629 1.38629 1.38629 1.38629
9188 0.03738 3.99851 3.99851 1.46634 0.26236 1.09861 0.40547
9189 9 3.06546 2.58040 3.11450 0.18245 9 - -
9190 1.38629 1.38629 1.38629 1.38629
9191 0.03738 3.99851 3.99851 1.46634 0.26236 1.09861 0.40547
9192 10 2.93142 3.56437 0.11975 3.46663 10 - -
9193 1.38629 1.38629 1.38629 1.38629
9194 0.03738 3.99851 3.99851 1.46634 0.26236 1.09861 0.40547
9195 11 0.14497 3.35727 2.78696 3.25677 11 - -
9196 1.38629 1.38629 1.38629 1.38629
9197 0.03738 3.99851 3.99851 1.46634 0.26236 1.09861 0.40547
9198 12 3.06546 2.58040 3.11450 0.18245 12 - -
9199 1.38629 1.38629 1.38629 1.38629
9200 0.03738 3.99851 3.99851 1.46634 0.26236 1.09861 0.40547
9201 13 0.14497 3.35727 2.78696 3.25677 13 - -
9202 1.38629 1.38629 1.38629 1.38629
9203 0.03738 3.99851 3.99851 1.46634 0.26236 1.09861 0.40547
9204 14 3.06546 2.58040 3.11450 0.18245 14 - -
9205 1.38629 1.38629 1.38629 1.38629
9206 0.03738 3.99851 3.99851 1.46634 0.26236 1.09861 0.40547
9207 15 3.06546 2.58040 3.11450 0.18245 15 - -
9208 1.38629 1.38629 1.38629 1.38629
9209 0.03738 3.99851 3.99851 1.46634 0.26236 1.09861 0.40547
9210 16 0.14497 3.35727 2.78696 3.25677 16 - -
9211 1.38629 1.38629 1.38629 1.38629
9212 0.03738 3.99851 3.99851 1.46634 0.26236 1.09861 0.40547
9213 17 2.93142 3.56437 0.11975 3.46663 17 - -
9214 1.38629 1.38629 1.38629 1.38629
9215 0.03738 3.99851 3.99851 1.46634 0.26236 1.09861 0.40547
9216 18 2.93142 3.56437 0.11975 3.46663 18 - -
9217 1.38629 1.38629 1.38629 1.38629
9218 0.03738 3.99851 3.99851 1.46634 0.26236 1.09861 0.40547
9219 19 3.40659 0.13342 3.45717 2.80965 19 - -
9220 1.38629 1.38629 1.38629 1.38629
9221 0.03738 3.99851 3.99851 1.46634 0.26236 1.09861 0.40547
9222 20 0.14497 3.35727 2.78696 3.25677 20 - -
9223 1.38629 1.38629 1.38629 1.38629
9224 0.03738 3.99851 3.99851 1.46634 0.26236 1.09861 0.40547
9225 21 0.14497 3.35727 2.78696 3.25677 21 - -
9226 1.38629 1.38629 1.38629 1.38629
9227 0.03738 3.99851 3.99851 1.46634 0.26236 1.09861 0.40547
9228 22 2.93142 3.56437 0.11975 3.46663 22 - -
9229 1.38629 1.38629 1.38629 1.38629
9230 0.03738 3.99851 3.99851 1.46634 0.26236 1.09861 0.40547
9231 23 0.14497 3.35727 2.78696 3.25677 23 - -
9232 1.38629 1.38629 1.38629 1.38629
9233 0.03738 3.99851 3.99851 1.46634 0.26236 1.09861 0.40547
9234 24 3.06546 2.58040 3.11450 0.18245 24 - -
9235 1.38629 1.38629 1.38629 1.38629
9236 0.03738 3.99851 3.99851 1.46634 0.26236 1.09861 0.40547
9237 25 3.06546 2.58040 3.11450 0.18245 25 - -
9238 1.38629 1.38629 1.38629 1.38629
9239 0.03738 3.99851 3.99851 1.46634 0.26236 1.09861 0.40547
9240 26 0.14497 3.35727 2.78696 3.25677 26 - -
9241 1.38629 1.38629 1.38629 1.38629
9242 0.03738 3.99851 3.99851 1.46634 0.26236 1.09861 0.40547
9243 27 3.40659 0.13342 3.45717 2.80965 27 - -
9244 1.38629 1.38629 1.38629 1.38629
9245 0.03738 3.99851 3.99851 1.46634 0.26236 1.09861 0.40547
9246 28 3.40659 0.13342 3.45717 2.80965 28 - -
9247 1.38629 1.38629 1.38629 1.38629
9248 0.03738 3.99851 3.99851 1.46634 0.26236 1.09861 0.40547
9249 29 3.40659 0.13342 3.45717 2.80965 29 - -
9250 1.38629 1.38629 1.38629 1.38629
9251 0.03738 3.99851 3.99851 1.46634 0.26236 1.09861 0.40547
9252 30 2.93142 3.56437 0.11975 3.46663 30 - -
9253 1.38629 1.38629 1.38629 1.38629
9254 0.03738 3.99851 3.99851 1.46634 0.26236 1.09861 0.40547
9255 31 3.40659 0.13342 3.45717 2.80965 31 - -
9256 1.38629 1.38629 1.38629 1.38629
9257 0.03738 3.99851 3.99851 1.46634 0.26236 1.09861 0.40547
9258 32 3.06546 2.58040 3.11450 0.18245 32 - -
9259 1.38629 1.38629 1.38629 1.38629
9260 0.03738 3.99851 3.99851 1.46634 0.26236 1.09861 0.40547
9261 33 2.93142 3.56437 0.11975 3.46663 33 - -
9262 1.38629 1.38629 1.38629 1.38629
9263 0.03738 3.99851 3.99851 1.46634 0.26236 1.09861 0.40547
9264 34 0.14497 3.35727 2.78696 3.25677 34 - -
9265 1.38629 1.38629 1.38629 1.38629
9266 0.03738 3.99851 3.99851 1.46634 0.26236 1.09861 0.40547
9267 35 0.14497 3.35727 2.78696 3.25677 35 - -
9268 1.38629 1.38629 1.38629 1.38629
9269 0.03738 3.99851 3.99851 1.46634 0.26236 1.09861 0.40547
9270 36 3.40659 0.13342 3.45717 2.80965 36 - -
9271 1.38629 1.38629 1.38629 1.38629
9272 0.03738 3.99851 3.99851 1.46634 0.26236 1.09861 0.40547
9273 37 3.06546 2.58040 3.11450 0.18245 37 - -
9274 1.38629 1.38629 1.38629 1.38629
9275 0.03738 3.99851 3.99851 1.46634 0.26236 1.09861 0.40547
9276 38 3.06546 2.58040 3.11450 0.18245 38 - -
9277 1.38629 1.38629 1.38629 1.38629
9278 0.03738 3.99851 3.99851 1.46634 0.26236 1.09861 0.40547
9279 39 0.14497 3.35727 2.78696 3.25677 39 - -
9280 1.38629 1.38629 1.38629 1.38629
9281 0.03738 3.99851 3.99851 1.46634 0.26236 1.09861 0.40547
9282 40 0.14497 3.35727 2.78696 3.25677 40 - -
9283 1.38629 1.38629 1.38629 1.38629
9284 0.03738 3.99851 3.99851 1.46634 0.26236 1.09861 0.40547
9285 41 2.93142 3.56437 0.11975 3.46663 41 - -
9286 1.38629 1.38629 1.38629 1.38629
9287 0.03738 3.99851 3.99851 1.46634 0.26236 1.09861 0.40547
9288 42 3.40659 0.13342 3.45717 2.80965 42 - -
9289 1.38629 1.38629 1.38629 1.38629
9290 0.03738 3.99851 3.99851 1.46634 0.26236 1.09861 0.40547
9291 43 0.14497 3.35727 2.78696 3.25677 43 - -
9292 1.38629 1.38629 1.38629 1.38629
9293 0.03738 3.99851 3.99851 1.46634 0.26236 1.09861 0.40547
9294 44 3.06546 2.58040 3.11450 0.18245 44 - -
9295 1.38629 1.38629 1.38629 1.38629
9296 0.03738 3.99851 3.99851 1.46634 0.26236 1.09861 0.40547
9297 45 0.14497 3.35727 2.78696 3.25677 45 - -
9298 1.38629 1.38629 1.38629 1.38629
9299 0.01886 3.98000 * 1.46634 0.26236 0.00000 *
9300 //
9301 HMMER3/b [3.0 | March 2010]
9302 NAME 4_LSU_Oomycota_4_LSU_start_one_long
9303 LENG 45
9304 ALPH DNA
9305 RF no
9306 CS no
9307 MAP yes
9308 DATE Tue Jan 24 11:02:29 2012
9309 NSEQ 68
9310 EFFN 3.324463
9311 CKSUM 3362386651
9312 STATS LOCAL MSV -7.8671 0.71933
9313 STATS LOCAL VITERBI -7.7272 0.71933
9314 STATS LOCAL FORWARD -3.9336 0.71933
9315 HMM A C G T
9316 m->m m->i m->d i->m i->i d->m d->d
9317 COMPO 1.11133 1.39673 1.69458 1.42796
9318 1.38629 1.38629 1.38629 1.38629
9319 0.03687 4.01177 4.01177 1.46634 0.26236 0.00000 *
9320 1 3.08918 2.59551 3.13732 0.17858 1 - -
9321 1.38629 1.38629 1.38629 1.38629
9322 0.03687 4.01177 4.01177 1.46634 0.26236 1.09861 0.40547
9323 2 3.08918 2.59551 3.13732 0.17858 2 - -
9324 1.38629 1.38629 1.38629 1.38629
9325 0.03687 4.01177 4.01177 1.46634 0.26236 1.09861 0.40547
9326 3 3.08918 2.59551 3.13732 0.17858 3 - -
9327 1.38629 1.38629 1.38629 1.38629
9328 0.03687 4.01177 4.01177 1.46634 0.26236 1.09861 0.40547
9329 4 2.94793 3.58833 0.11710 3.49306 4 - -
9330 1.38629 1.38629 1.38629 1.38629
9331 0.03687 4.01177 4.01177 1.46634 0.26236 1.09861 0.40547
9332 5 2.94793 3.58833 0.11710 3.49306 5 - -
9333 1.38629 1.38629 1.38629 1.38629
9334 0.03687 4.01177 4.01177 1.46634 0.26236 1.09861 0.40547
9335 6 0.14182 3.38083 2.80229 3.28255 6 - -
9336 1.38629 1.38629 1.38629 1.38629
9337 0.03687 4.01177 4.01177 1.46634 0.26236 1.09861 0.40547
9338 7 3.43377 0.13013 3.48320 2.82948 7 - -
9339 1.38629 1.38629 1.38629 1.38629
9340 0.03687 4.01177 4.01177 1.46634 0.26236 1.09861 0.40547
9341 8 3.43377 0.13013 3.48320 2.82948 8 - -
9342 1.38629 1.38629 1.38629 1.38629
9343 0.03687 4.01177 4.01177 1.46634 0.26236 1.09861 0.40547
9344 9 3.08918 2.59551 3.13732 0.17858 9 - -
9345 1.38629 1.38629 1.38629 1.38629
9346 0.03687 4.01177 4.01177 1.46634 0.26236 1.09861 0.40547
9347 10 2.94793 3.58833 0.11710 3.49306 10 - -
9348 1.38629 1.38629 1.38629 1.38629
9349 0.03687 4.01177 4.01177 1.46634 0.26236 1.09861 0.40547
9350 11 0.14182 3.38083 2.80229 3.28255 11 - -
9351 1.38629 1.38629 1.38629 1.38629
9352 0.03687 4.01177 4.01177 1.46634 0.26236 1.09861 0.40547
9353 12 3.08918 2.59551 3.13732 0.17858 12 - -
9354 1.38629 1.38629 1.38629 1.38629
9355 0.03687 4.01177 4.01177 1.46634 0.26236 1.09861 0.40547
9356 13 0.14182 3.38083 2.80229 3.28255 13 - -
9357 1.38629 1.38629 1.38629 1.38629
9358 0.03687 4.01177 4.01177 1.46634 0.26236 1.09861 0.40547
9359 14 3.08918 2.59551 3.13732 0.17858 14 - -
9360 1.38629 1.38629 1.38629 1.38629
9361 0.03687 4.01177 4.01177 1.46634 0.26236 1.09861 0.40547
9362 15 3.43377 0.13013 3.48320 2.82948 15 - -
9363 1.38629 1.38629 1.38629 1.38629
9364 0.03687 4.01177 4.01177 1.46634 0.26236 1.09861 0.40547
9365 16 0.14182 3.38083 2.80229 3.28255 16 - -
9366 1.38629 1.38629 1.38629 1.38629
9367 0.03687 4.01177 4.01177 1.46634 0.26236 1.09861 0.40547
9368 17 0.14182 3.38083 2.80229 3.28255 17 - -
9369 1.38629 1.38629 1.38629 1.38629
9370 0.03687 4.01177 4.01177 1.46634 0.26236 1.09861 0.40547
9371 18 0.14182 3.38083 2.80229 3.28255 18 - -
9372 1.38629 1.38629 1.38629 1.38629
9373 0.03687 4.01177 4.01177 1.46634 0.26236 1.09861 0.40547
9374 19 3.43377 0.13013 3.48320 2.82948 19 - -
9375 1.38629 1.38629 1.38629 1.38629
9376 0.03687 4.01177 4.01177 1.46634 0.26236 1.09861 0.40547
9377 20 0.14182 3.38083 2.80229 3.28255 20 - -
9378 1.38629 1.38629 1.38629 1.38629
9379 0.03687 4.01177 4.01177 1.46634 0.26236 1.09861 0.40547
9380 21 0.14182 3.38083 2.80229 3.28255 21 - -
9381 1.38629 1.38629 1.38629 1.38629
9382 0.03687 4.01177 4.01177 1.46634 0.26236 1.09861 0.40547
9383 22 2.94793 3.58833 0.11710 3.49306 22 - -
9384 1.38629 1.38629 1.38629 1.38629
9385 0.03687 4.01177 4.01177 1.46634 0.26236 1.09861 0.40547
9386 23 0.14182 3.38083 2.80229 3.28255 23 - -
9387 1.38629 1.38629 1.38629 1.38629
9388 0.03687 4.01177 4.01177 1.46634 0.26236 1.09861 0.40547
9389 24 3.07417 0.22287 3.13428 2.20709 24 - -
9390 1.38629 1.38629 1.38629 1.38629
9391 0.03687 4.01177 4.01177 1.46634 0.26236 1.09861 0.40547
9392 25 3.08918 2.59551 3.13732 0.17858 25 - -
9393 1.38629 1.38629 1.38629 1.38629
9394 0.03687 4.01177 4.01177 1.46634 0.26236 1.09861 0.40547
9395 26 0.14182 3.38083 2.80229 3.28255 26 - -
9396 1.38629 1.38629 1.38629 1.38629
9397 0.03687 4.01177 4.01177 1.46634 0.26236 1.09861 0.40547
9398 27 3.43377 0.13013 3.48320 2.82948 27 - -
9399 1.38629 1.38629 1.38629 1.38629
9400 0.03687 4.01177 4.01177 1.46634 0.26236 1.09861 0.40547
9401 28 3.43377 0.13013 3.48320 2.82948 28 - -
9402 1.38629 1.38629 1.38629 1.38629
9403 0.03687 4.01177 4.01177 1.46634 0.26236 1.09861 0.40547
9404 29 3.43377 0.13013 3.48320 2.82948 29 - -
9405 1.38629 1.38629 1.38629 1.38629
9406 0.03687 4.01177 4.01177 1.46634 0.26236 1.09861 0.40547
9407 30 2.94793 3.58833 0.11710 3.49306 30 - -
9408 1.38629 1.38629 1.38629 1.38629
9409 0.03687 4.01177 4.01177 1.46634 0.26236 1.09861 0.40547
9410 31 3.43377 0.13013 3.48320 2.82948 31 - -
9411 1.38629 1.38629 1.38629 1.38629
9412 0.03687 4.01177 4.01177 1.46634 0.26236 1.09861 0.40547
9413 32 3.08918 2.59551 3.13732 0.17858 32 - -
9414 1.38629 1.38629 1.38629 1.38629
9415 0.03687 4.01177 4.01177 1.46634 0.26236 1.09861 0.40547
9416 33 2.94793 3.58833 0.11710 3.49306 33 - -
9417 1.38629 1.38629 1.38629 1.38629
9418 0.03687 4.01177 4.01177 1.46634 0.26236 1.09861 0.40547
9419 34 0.14182 3.38083 2.80229 3.28255 34 - -
9420 1.38629 1.38629 1.38629 1.38629
9421 0.03687 4.01177 4.01177 1.46634 0.26236 1.09861 0.40547
9422 35 0.14182 3.38083 2.80229 3.28255 35 - -
9423 1.38629 1.38629 1.38629 1.38629
9424 0.03687 4.01177 4.01177 1.46634 0.26236 1.09861 0.40547
9425 36 3.43377 0.13013 3.48320 2.82948 36 - -
9426 1.38629 1.38629 1.38629 1.38629
9427 0.03687 4.01177 4.01177 1.46634 0.26236 1.09861 0.40547
9428 37 3.08918 2.59551 3.13732 0.17858 37 - -
9429 1.38629 1.38629 1.38629 1.38629
9430 0.03687 4.01177 4.01177 1.46634 0.26236 1.09861 0.40547
9431 38 3.08918 2.59551 3.13732 0.17858 38 - -
9432 1.38629 1.38629 1.38629 1.38629
9433 0.03687 4.01177 4.01177 1.46634 0.26236 1.09861 0.40547
9434 39 0.14182 3.38083 2.80229 3.28255 39 - -
9435 1.38629 1.38629 1.38629 1.38629
9436 0.03687 4.01177 4.01177 1.46634 0.26236 1.09861 0.40547
9437 40 0.14182 3.38083 2.80229 3.28255 40 - -
9438 1.38629 1.38629 1.38629 1.38629
9439 0.03687 4.01177 4.01177 1.46634 0.26236 1.09861 0.40547
9440 41 2.94793 3.58833 0.11710 3.49306 41 - -
9441 1.38629 1.38629 1.38629 1.38629
9442 0.03687 4.01177 4.01177 1.46634 0.26236 1.09861 0.40547
9443 42 3.43377 0.13013 3.48320 2.82948 42 - -
9444 1.38629 1.38629 1.38629 1.38629
9445 0.03687 4.01177 4.01177 1.46634 0.26236 1.09861 0.40547
9446 43 0.14182 3.38083 2.80229 3.28255 43 - -
9447 1.38629 1.38629 1.38629 1.38629
9448 0.03687 4.01177 4.01177 1.46634 0.26236 1.09861 0.40547
9449 44 3.08918 2.59551 3.13732 0.17858 44 - -
9450 1.38629 1.38629 1.38629 1.38629
9451 0.03687 4.01177 4.01177 1.46634 0.26236 1.09861 0.40547
9452 45 0.14182 3.38083 2.80229 3.28255 45 - -
9453 1.38629 1.38629 1.38629 1.38629
9454 0.01861 3.99350 * 1.46634 0.26236 0.00000 *
9455 //
9456 HMMER3/b [3.0 | March 2010]
9457 NAME 4_LSU_Oomycota_4_LSU_start_seven_long
9458 LENG 45
9459 ALPH DNA
9460 RF no
9461 CS no
9462 MAP yes
9463 DATE Tue Jan 24 11:03:21 2012
9464 NSEQ 8
9465 EFFN 3.324219
9466 CKSUM 4152346698
9467 STATS LOCAL MSV -8.0731 0.71933
9468 STATS LOCAL VITERBI -7.6102 0.71933
9469 STATS LOCAL FORWARD -4.1659 0.71933
9470 HMM A C G T
9471 m->m m->i m->d i->m i->i d->m d->d
9472 COMPO 1.10749 1.61676 1.60160 1.31119
9473 1.38629 1.38629 1.38629 1.38629
9474 0.03688 4.01173 4.01173 1.46634 0.26236 0.00000 *
9475 1 0.14183 3.38076 2.80224 3.28247 1 - -
9476 1.38629 1.38629 1.38629 1.38629
9477 0.03688 4.01173 4.01173 1.46634 0.26236 1.09861 0.40547
9478 2 3.08911 2.59546 3.13724 0.17860 2 - -
9479 1.38629 1.38629 1.38629 1.38629
9480 0.03688 4.01173 4.01173 1.46634 0.26236 1.09861 0.40547
9481 3 3.08911 2.59546 3.13724 0.17860 3 - -
9482 1.38629 1.38629 1.38629 1.38629
9483 0.03688 4.01173 4.01173 1.46634 0.26236 1.09861 0.40547
9484 4 2.94787 3.58826 0.11710 3.49298 4 - -
9485 1.38629 1.38629 1.38629 1.38629
9486 0.03688 4.01173 4.01173 1.46634 0.26236 1.09861 0.40547
9487 5 2.94787 3.58826 0.11710 3.49298 5 - -
9488 1.38629 1.38629 1.38629 1.38629
9489 0.03688 4.01173 4.01173 1.46634 0.26236 1.09861 0.40547
9490 6 0.14183 3.38076 2.80224 3.28247 6 - -
9491 1.38629 1.38629 1.38629 1.38629
9492 0.03688 4.01173 4.01173 1.46634 0.26236 1.09861 0.40547
9493 7 3.43368 0.13014 3.48311 2.82941 7 - -
9494 1.38629 1.38629 1.38629 1.38629
9495 0.03688 4.01173 4.01173 1.46634 0.26236 1.09861 0.40547
9496 8 3.43368 0.13014 3.48311 2.82941 8 - -
9497 1.38629 1.38629 1.38629 1.38629
9498 0.03688 4.01173 4.01173 1.46634 0.26236 1.09861 0.40547
9499 9 3.08911 2.59546 3.13724 0.17860 9 - -
9500 1.38629 1.38629 1.38629 1.38629
9501 0.03688 4.01173 4.01173 1.46634 0.26236 1.09861 0.40547
9502 10 2.94787 3.58826 0.11710 3.49298 10 - -
9503 1.38629 1.38629 1.38629 1.38629
9504 0.03688 4.01173 4.01173 1.46634 0.26236 1.09861 0.40547
9505 11 0.14183 3.38076 2.80224 3.28247 11 - -
9506 1.38629 1.38629 1.38629 1.38629
9507 0.03688 4.01173 4.01173 1.46634 0.26236 1.09861 0.40547
9508 12 3.08911 2.59546 3.13724 0.17860 12 - -
9509 1.38629 1.38629 1.38629 1.38629
9510 0.03688 4.01173 4.01173 1.46634 0.26236 1.09861 0.40547
9511 13 0.14183 3.38076 2.80224 3.28247 13 - -
9512 1.38629 1.38629 1.38629 1.38629
9513 0.03688 4.01173 4.01173 1.46634 0.26236 1.09861 0.40547
9514 14 3.08911 2.59546 3.13724 0.17860 14 - -
9515 1.38629 1.38629 1.38629 1.38629
9516 0.03688 4.01173 4.01173 1.46634 0.26236 1.09861 0.40547
9517 15 3.43368 0.13014 3.48311 2.82941 15 - -
9518 1.38629 1.38629 1.38629 1.38629
9519 0.03688 4.01173 4.01173 1.46634 0.26236 1.09861 0.40547
9520 16 0.14183 3.38076 2.80224 3.28247 16 - -
9521 1.38629 1.38629 1.38629 1.38629
9522 0.03688 4.01173 4.01173 1.46634 0.26236 1.09861 0.40547
9523 17 0.14183 3.38076 2.80224 3.28247 17 - -
9524 1.38629 1.38629 1.38629 1.38629
9525 0.03688 4.01173 4.01173 1.46634 0.26236 1.09861 0.40547
9526 18 2.94787 3.58826 0.11710 3.49298 18 - -
9527 1.38629 1.38629 1.38629 1.38629
9528 0.03688 4.01173 4.01173 1.46634 0.26236 1.09861 0.40547
9529 19 3.08911 2.59546 3.13724 0.17860 19 - -
9530 1.38629 1.38629 1.38629 1.38629
9531 0.03688 4.01173 4.01173 1.46634 0.26236 1.09861 0.40547
9532 20 0.14183 3.38076 2.80224 3.28247 20 - -
9533 1.38629 1.38629 1.38629 1.38629
9534 0.03688 4.01173 4.01173 1.46634 0.26236 1.09861 0.40547
9535 21 0.14183 3.38076 2.80224 3.28247 21 - -
9536 1.38629 1.38629 1.38629 1.38629
9537 0.03688 4.01173 4.01173 1.46634 0.26236 1.09861 0.40547
9538 22 2.94787 3.58826 0.11710 3.49298 22 - -
9539 1.38629 1.38629 1.38629 1.38629
9540 0.03688 4.01173 4.01173 1.46634 0.26236 1.09861 0.40547
9541 23 0.14183 3.38076 2.80224 3.28247 23 - -
9542 1.38629 1.38629 1.38629 1.38629
9543 0.03688 4.01173 4.01173 1.46634 0.26236 1.09861 0.40547
9544 24 3.08911 2.59546 3.13724 0.17860 24 - -
9545 1.38629 1.38629 1.38629 1.38629
9546 0.03688 4.01173 4.01173 1.46634 0.26236 1.09861 0.40547
9547 25 3.08911 2.59546 3.13724 0.17860 25 - -
9548 1.38629 1.38629 1.38629 1.38629
9549 0.03688 4.01173 4.01173 1.46634 0.26236 1.09861 0.40547
9550 26 0.14183 3.38076 2.80224 3.28247 26 - -
9551 1.38629 1.38629 1.38629 1.38629
9552 0.03688 4.01173 4.01173 1.46634 0.26236 1.09861 0.40547
9553 27 3.43368 0.13014 3.48311 2.82941 27 - -
9554 1.38629 1.38629 1.38629 1.38629
9555 0.03688 4.01173 4.01173 1.46634 0.26236 1.09861 0.40547
9556 28 3.43368 0.13014 3.48311 2.82941 28 - -
9557 1.38629 1.38629 1.38629 1.38629
9558 0.03688 4.01173 4.01173 1.46634 0.26236 1.09861 0.40547
9559 29 3.43368 0.13014 3.48311 2.82941 29 - -
9560 1.38629 1.38629 1.38629 1.38629
9561 0.03688 4.01173 4.01173 1.46634 0.26236 1.09861 0.40547
9562 30 2.94787 3.58826 0.11710 3.49298 30 - -
9563 1.38629 1.38629 1.38629 1.38629
9564 0.03688 4.01173 4.01173 1.46634 0.26236 1.09861 0.40547
9565 31 3.43368 0.13014 3.48311 2.82941 31 - -
9566 1.38629 1.38629 1.38629 1.38629
9567 0.03688 4.01173 4.01173 1.46634 0.26236 1.09861 0.40547
9568 32 3.08911 2.59546 3.13724 0.17860 32 - -
9569 1.38629 1.38629 1.38629 1.38629
9570 0.03688 4.01173 4.01173 1.46634 0.26236 1.09861 0.40547
9571 33 2.94787 3.58826 0.11710 3.49298 33 - -
9572 1.38629 1.38629 1.38629 1.38629
9573 0.03688 4.01173 4.01173 1.46634 0.26236 1.09861 0.40547
9574 34 0.14183 3.38076 2.80224 3.28247 34 - -
9575 1.38629 1.38629 1.38629 1.38629
9576 0.03688 4.01173 4.01173 1.46634 0.26236 1.09861 0.40547
9577 35 0.14183 3.38076 2.80224 3.28247 35 - -
9578 1.38629 1.38629 1.38629 1.38629
9579 0.03688 4.01173 4.01173 1.46634 0.26236 1.09861 0.40547
9580 36 3.08911 2.59546 3.13724 0.17860 36 - -
9581 1.38629 1.38629 1.38629 1.38629
9582 0.03688 4.01173 4.01173 1.46634 0.26236 1.09861 0.40547
9583 37 3.08911 2.59546 3.13724 0.17860 37 - -
9584 1.38629 1.38629 1.38629 1.38629
9585 0.03688 4.01173 4.01173 1.46634 0.26236 1.09861 0.40547
9586 38 3.08911 2.59546 3.13724 0.17860 38 - -
9587 1.38629 1.38629 1.38629 1.38629
9588 0.03688 4.01173 4.01173 1.46634 0.26236 1.09861 0.40547
9589 39 0.14183 3.38076 2.80224 3.28247 39 - -
9590 1.38629 1.38629 1.38629 1.38629
9591 0.03688 4.01173 4.01173 1.46634 0.26236 1.09861 0.40547
9592 40 0.14183 3.38076 2.80224 3.28247 40 - -
9593 1.38629 1.38629 1.38629 1.38629
9594 0.03688 4.01173 4.01173 1.46634 0.26236 1.09861 0.40547
9595 41 2.94787 3.58826 0.11710 3.49298 41 - -
9596 1.38629 1.38629 1.38629 1.38629
9597 0.03688 4.01173 4.01173 1.46634 0.26236 1.09861 0.40547
9598 42 3.43368 0.13014 3.48311 2.82941 42 - -
9599 1.38629 1.38629 1.38629 1.38629
9600 0.03688 4.01173 4.01173 1.46634 0.26236 1.09861 0.40547
9601 43 0.14183 3.38076 2.80224 3.28247 43 - -
9602 1.38629 1.38629 1.38629 1.38629
9603 0.03688 4.01173 4.01173 1.46634 0.26236 1.09861 0.40547
9604 44 3.08911 2.59546 3.13724 0.17860 44 - -
9605 1.38629 1.38629 1.38629 1.38629
9606 0.03688 4.01173 4.01173 1.46634 0.26236 1.09861 0.40547
9607 45 0.14183 3.38076 2.80224 3.28247 45 - -
9608 1.38629 1.38629 1.38629 1.38629
9609 0.01861 3.99346 * 1.46634 0.26236 0.00000 *
9610 //
9611 HMMER3/b [3.0 | March 2010]
9612 NAME 4_LSU_Oomycota_4_LSU_start_six_long
9613 LENG 45
9614 ALPH DNA
9615 RF no
9616 CS no
9617 MAP yes
9618 DATE Tue Jan 24 11:03:15 2012
9619 NSEQ 5
9620 EFFN 3.315430
9621 CKSUM 3218924662
9622 STATS LOCAL MSV -8.1953 0.71933
9623 STATS LOCAL VITERBI -7.6957 0.71933
9624 STATS LOCAL FORWARD -4.0267 0.71933
9625 HMM A C G T
9626 m->m m->i m->d i->m i->i d->m d->d
9627 COMPO 1.05857 1.53627 1.69177 1.37170
9628 1.38629 1.38629 1.38629 1.38629
9629 0.03694 4.01013 4.01013 1.46634 0.26236 0.00000 *
9630 1 0.14220 3.37794 2.80041 3.27938 1 - -
9631 1.38629 1.38629 1.38629 1.38629
9632 0.03694 4.01013 4.01013 1.46634 0.26236 1.09861 0.40547
9633 2 3.08626 2.59365 3.13451 0.17906 2 - -
9634 1.38629 1.38629 1.38629 1.38629
9635 0.03694 4.01013 4.01013 1.46634 0.26236 1.09861 0.40547
9636 3 3.08626 2.59365 3.13451 0.17906 3 - -
9637 1.38629 1.38629 1.38629 1.38629
9638 0.03694 4.01013 4.01013 1.46634 0.26236 1.09861 0.40547
9639 4 0.14220 3.37794 2.80041 3.27938 4 - -
9640 1.38629 1.38629 1.38629 1.38629
9641 0.03694 4.01013 4.01013 1.46634 0.26236 1.09861 0.40547
9642 5 2.94591 3.58540 0.11742 3.48982 5 - -
9643 1.38629 1.38629 1.38629 1.38629
9644 0.03694 4.01013 4.01013 1.46634 0.26236 1.09861 0.40547
9645 6 0.14220 3.37794 2.80041 3.27938 6 - -
9646 1.38629 1.38629 1.38629 1.38629
9647 0.03694 4.01013 4.01013 1.46634 0.26236 1.09861 0.40547
9648 7 3.43043 0.13053 3.48000 2.82705 7 - -
9649 1.38629 1.38629 1.38629 1.38629
9650 0.03694 4.01013 4.01013 1.46634 0.26236 1.09861 0.40547
9651 8 3.43043 0.13053 3.48000 2.82705 8 - -
9652 1.38629 1.38629 1.38629 1.38629
9653 0.03694 4.01013 4.01013 1.46634 0.26236 1.09861 0.40547
9654 9 3.08626 2.59365 3.13451 0.17906 9 - -
9655 1.38629 1.38629 1.38629 1.38629
9656 0.03694 4.01013 4.01013 1.46634 0.26236 1.09861 0.40547
9657 10 2.94591 3.58540 0.11742 3.48982 10 - -
9658 1.38629 1.38629 1.38629 1.38629
9659 0.03694 4.01013 4.01013 1.46634 0.26236 1.09861 0.40547
9660 11 0.14220 3.37794 2.80041 3.27938 11 - -
9661 1.38629 1.38629 1.38629 1.38629
9662 0.03694 4.01013 4.01013 1.46634 0.26236 1.09861 0.40547
9663 12 3.08626 2.59365 3.13451 0.17906 12 - -
9664 1.38629 1.38629 1.38629 1.38629
9665 0.03694 4.01013 4.01013 1.46634 0.26236 1.09861 0.40547
9666 13 0.14220 3.37794 2.80041 3.27938 13 - -
9667 1.38629 1.38629 1.38629 1.38629
9668 0.03694 4.01013 4.01013 1.46634 0.26236 1.09861 0.40547
9669 14 3.08626 2.59365 3.13451 0.17906 14 - -
9670 1.38629 1.38629 1.38629 1.38629
9671 0.03694 4.01013 4.01013 1.46634 0.26236 1.09861 0.40547
9672 15 3.43043 0.13053 3.48000 2.82705 15 - -
9673 1.38629 1.38629 1.38629 1.38629
9674 0.03694 4.01013 4.01013 1.46634 0.26236 1.09861 0.40547
9675 16 0.14220 3.37794 2.80041 3.27938 16 - -
9676 1.38629 1.38629 1.38629 1.38629
9677 0.03694 4.01013 4.01013 1.46634 0.26236 1.09861 0.40547
9678 17 0.14220 3.37794 2.80041 3.27938 17 - -
9679 1.38629 1.38629 1.38629 1.38629
9680 0.03694 4.01013 4.01013 1.46634 0.26236 1.09861 0.40547
9681 18 2.94591 3.58540 0.11742 3.48982 18 - -
9682 1.38629 1.38629 1.38629 1.38629
9683 0.03694 4.01013 4.01013 1.46634 0.26236 1.09861 0.40547
9684 19 3.43043 0.13053 3.48000 2.82705 19 - -
9685 1.38629 1.38629 1.38629 1.38629
9686 0.03694 4.01013 4.01013 1.46634 0.26236 1.09861 0.40547
9687 20 0.14220 3.37794 2.80041 3.27938 20 - -
9688 1.38629 1.38629 1.38629 1.38629
9689 0.03694 4.01013 4.01013 1.46634 0.26236 1.09861 0.40547
9690 21 0.14220 3.37794 2.80041 3.27938 21 - -
9691 1.38629 1.38629 1.38629 1.38629
9692 0.03694 4.01013 4.01013 1.46634 0.26236 1.09861 0.40547
9693 22 2.94591 3.58540 0.11742 3.48982 22 - -
9694 1.38629 1.38629 1.38629 1.38629
9695 0.03694 4.01013 4.01013 1.46634 0.26236 1.09861 0.40547
9696 23 0.14220 3.37794 2.80041 3.27938 23 - -
9697 1.38629 1.38629 1.38629 1.38629
9698 0.03694 4.01013 4.01013 1.46634 0.26236 1.09861 0.40547
9699 24 3.08626 2.59365 3.13451 0.17906 24 - -
9700 1.38629 1.38629 1.38629 1.38629
9701 0.03694 4.01013 4.01013 1.46634 0.26236 1.09861 0.40547
9702 25 3.08626 2.59365 3.13451 0.17906 25 - -
9703 1.38629 1.38629 1.38629 1.38629
9704 0.03694 4.01013 4.01013 1.46634 0.26236 1.09861 0.40547
9705 26 0.14220 3.37794 2.80041 3.27938 26 - -
9706 1.38629 1.38629 1.38629 1.38629
9707 0.03694 4.01013 4.01013 1.46634 0.26236 1.09861 0.40547
9708 27 3.43043 0.13053 3.48000 2.82705 27 - -
9709 1.38629 1.38629 1.38629 1.38629
9710 0.03694 4.01013 4.01013 1.46634 0.26236 1.09861 0.40547
9711 28 3.43043 0.13053 3.48000 2.82705 28 - -
9712 1.38629 1.38629 1.38629 1.38629
9713 0.03694 4.01013 4.01013 1.46634 0.26236 1.09861 0.40547
9714 29 3.43043 0.13053 3.48000 2.82705 29 - -
9715 1.38629 1.38629 1.38629 1.38629
9716 0.03694 4.01013 4.01013 1.46634 0.26236 1.09861 0.40547
9717 30 2.94591 3.58540 0.11742 3.48982 30 - -
9718 1.38629 1.38629 1.38629 1.38629
9719 0.03694 4.01013 4.01013 1.46634 0.26236 1.09861 0.40547
9720 31 3.43043 0.13053 3.48000 2.82705 31 - -
9721 1.38629 1.38629 1.38629 1.38629
9722 0.03694 4.01013 4.01013 1.46634 0.26236 1.09861 0.40547
9723 32 3.08626 2.59365 3.13451 0.17906 32 - -
9724 1.38629 1.38629 1.38629 1.38629
9725 0.03694 4.01013 4.01013 1.46634 0.26236 1.09861 0.40547
9726 33 2.94591 3.58540 0.11742 3.48982 33 - -
9727 1.38629 1.38629 1.38629 1.38629
9728 0.03694 4.01013 4.01013 1.46634 0.26236 1.09861 0.40547
9729 34 0.14220 3.37794 2.80041 3.27938 34 - -
9730 1.38629 1.38629 1.38629 1.38629
9731 0.03694 4.01013 4.01013 1.46634 0.26236 1.09861 0.40547
9732 35 0.14220 3.37794 2.80041 3.27938 35 - -
9733 1.38629 1.38629 1.38629 1.38629
9734 0.03694 4.01013 4.01013 1.46634 0.26236 1.09861 0.40547
9735 36 3.08626 2.59365 3.13451 0.17906 36 - -
9736 1.38629 1.38629 1.38629 1.38629
9737 0.03694 4.01013 4.01013 1.46634 0.26236 1.09861 0.40547
9738 37 3.08626 2.59365 3.13451 0.17906 37 - -
9739 1.38629 1.38629 1.38629 1.38629
9740 0.03694 4.01013 4.01013 1.46634 0.26236 1.09861 0.40547
9741 38 3.08626 2.59365 3.13451 0.17906 38 - -
9742 1.38629 1.38629 1.38629 1.38629
9743 0.03694 4.01013 4.01013 1.46634 0.26236 1.09861 0.40547
9744 39 0.14220 3.37794 2.80041 3.27938 39 - -
9745 1.38629 1.38629 1.38629 1.38629
9746 0.03694 4.01013 4.01013 1.46634 0.26236 1.09861 0.40547
9747 40 0.14220 3.37794 2.80041 3.27938 40 - -
9748 1.38629 1.38629 1.38629 1.38629
9749 0.03694 4.01013 4.01013 1.46634 0.26236 1.09861 0.40547
9750 41 2.94591 3.58540 0.11742 3.48982 41 - -
9751 1.38629 1.38629 1.38629 1.38629
9752 0.03694 4.01013 4.01013 1.46634 0.26236 1.09861 0.40547
9753 42 3.43043 0.13053 3.48000 2.82705 42 - -
9754 1.38629 1.38629 1.38629 1.38629
9755 0.03694 4.01013 4.01013 1.46634 0.26236 1.09861 0.40547
9756 43 0.14220 3.37794 2.80041 3.27938 43 - -
9757 1.38629 1.38629 1.38629 1.38629
9758 0.03694 4.01013 4.01013 1.46634 0.26236 1.09861 0.40547
9759 44 3.08626 2.59365 3.13451 0.17906 44 - -
9760 1.38629 1.38629 1.38629 1.38629
9761 0.03694 4.01013 4.01013 1.46634 0.26236 1.09861 0.40547
9762 45 0.14220 3.37794 2.80041 3.27938 45 - -
9763 1.38629 1.38629 1.38629 1.38629
9764 0.01864 3.99184 * 1.46634 0.26236 0.00000 *
9765 //
9766 HMMER3/b [3.0 | March 2010]
9767 NAME 4_LSU_Oomycota_4_LSU_start_sixteena_long
9768 LENG 45
9769 ALPH DNA
9770 RF no
9771 CS no
9772 MAP yes
9773 DATE Tue Jan 24 11:04:58 2012
9774 NSEQ 3
9775 EFFN 3.000000
9776 CKSUM 197893464
9777 STATS LOCAL MSV -7.8866 0.72046
9778 STATS LOCAL VITERBI -7.6374 0.72046
9779 STATS LOCAL FORWARD -3.9677 0.72046
9780 HMM A C G T
9781 m->m m->i m->d i->m i->i d->m d->d
9782 COMPO 1.22010 1.45900 1.51859 1.37314
9783 1.38629 1.38629 1.38629 1.38629
9784 0.03922 3.95124 3.95124 1.46634 0.26236 0.00000 *
9785 1 0.15719 3.27118 2.73043 3.16274 1 - -
9786 1.38629 1.38629 1.38629 1.38629
9787 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
9788 2 2.97980 2.52563 3.03204 0.19727 2 - -
9789 1.38629 1.38629 1.38629 1.38629
9790 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
9791 3 2.97980 2.52563 3.03204 0.19727 3 - -
9792 1.38629 1.38629 1.38629 1.38629
9793 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
9794 4 2.86982 3.47591 0.13017 3.36931 4 - -
9795 1.38629 1.38629 1.38629 1.38629
9796 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
9797 5 2.86982 3.47591 0.13017 3.36931 5 - -
9798 1.38629 1.38629 1.38629 1.38629
9799 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
9800 6 0.15719 3.27118 2.73043 3.16274 6 - -
9801 1.38629 1.38629 1.38629 1.38629
9802 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
9803 7 3.30705 0.14631 3.36166 2.73626 7 - -
9804 1.38629 1.38629 1.38629 1.38629
9805 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
9806 8 3.30705 0.14631 3.36166 2.73626 8 - -
9807 1.38629 1.38629 1.38629 1.38629
9808 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
9809 9 2.97980 2.52563 3.03204 0.19727 9 - -
9810 1.38629 1.38629 1.38629 1.38629
9811 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
9812 10 2.86982 3.47591 0.13017 3.36931 10 - -
9813 1.38629 1.38629 1.38629 1.38629
9814 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
9815 11 0.15719 3.27118 2.73043 3.16274 11 - -
9816 1.38629 1.38629 1.38629 1.38629
9817 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
9818 12 2.97980 2.52563 3.03204 0.19727 12 - -
9819 1.38629 1.38629 1.38629 1.38629
9820 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
9821 13 0.15719 3.27118 2.73043 3.16274 13 - -
9822 1.38629 1.38629 1.38629 1.38629
9823 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
9824 14 2.97980 2.52563 3.03204 0.19727 14 - -
9825 1.38629 1.38629 1.38629 1.38629
9826 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
9827 15 3.30705 0.14631 3.36166 2.73626 15 - -
9828 1.38629 1.38629 1.38629 1.38629
9829 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
9830 16 0.15719 3.27118 2.73043 3.16274 16 - -
9831 1.38629 1.38629 1.38629 1.38629
9832 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
9833 17 2.86982 3.47591 0.13017 3.36931 17 - -
9834 1.38629 1.38629 1.38629 1.38629
9835 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
9836 18 2.86982 3.47591 0.13017 3.36931 18 - -
9837 1.38629 1.38629 1.38629 1.38629
9838 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
9839 19 3.30705 0.14631 3.36166 2.73626 19 - -
9840 1.38629 1.38629 1.38629 1.38629
9841 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
9842 20 0.15719 3.27118 2.73043 3.16274 20 - -
9843 1.38629 1.38629 1.38629 1.38629
9844 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
9845 21 0.15719 3.27118 2.73043 3.16274 21 - -
9846 1.38629 1.38629 1.38629 1.38629
9847 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
9848 22 2.86982 3.47591 0.13017 3.36931 22 - -
9849 1.38629 1.38629 1.38629 1.38629
9850 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
9851 23 0.15719 3.27118 2.73043 3.16274 23 - -
9852 1.38629 1.38629 1.38629 1.38629
9853 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
9854 24 2.97980 2.52563 3.03204 0.19727 24 - -
9855 1.38629 1.38629 1.38629 1.38629
9856 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
9857 25 2.97980 2.52563 3.03204 0.19727 25 - -
9858 1.38629 1.38629 1.38629 1.38629
9859 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
9860 26 0.15719 3.27118 2.73043 3.16274 26 - -
9861 1.38629 1.38629 1.38629 1.38629
9862 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
9863 27 3.30705 0.14631 3.36166 2.73626 27 - -
9864 1.38629 1.38629 1.38629 1.38629
9865 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
9866 28 3.30705 0.14631 3.36166 2.73626 28 - -
9867 1.38629 1.38629 1.38629 1.38629
9868 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
9869 29 3.30705 0.14631 3.36166 2.73626 29 - -
9870 1.38629 1.38629 1.38629 1.38629
9871 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
9872 30 2.86982 3.47591 0.13017 3.36931 30 - -
9873 1.38629 1.38629 1.38629 1.38629
9874 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
9875 31 3.30705 0.14631 3.36166 2.73626 31 - -
9876 1.38629 1.38629 1.38629 1.38629
9877 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
9878 32 2.97980 2.52563 3.03204 0.19727 32 - -
9879 1.38629 1.38629 1.38629 1.38629
9880 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
9881 33 2.86982 3.47591 0.13017 3.36931 33 - -
9882 1.38629 1.38629 1.38629 1.38629
9883 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
9884 34 0.15719 3.27118 2.73043 3.16274 34 - -
9885 1.38629 1.38629 1.38629 1.38629
9886 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
9887 35 3.30705 0.14631 3.36166 2.73626 35 - -
9888 1.38629 1.38629 1.38629 1.38629
9889 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
9890 36 2.97980 2.52563 3.03204 0.19727 36 - -
9891 1.38629 1.38629 1.38629 1.38629
9892 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
9893 37 2.97980 2.52563 3.03204 0.19727 37 - -
9894 1.38629 1.38629 1.38629 1.38629
9895 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
9896 38 0.15719 3.27118 2.73043 3.16274 38 - -
9897 1.38629 1.38629 1.38629 1.38629
9898 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
9899 39 0.15719 3.27118 2.73043 3.16274 39 - -
9900 1.38629 1.38629 1.38629 1.38629
9901 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
9902 40 2.86982 3.47591 0.13017 3.36931 40 - -
9903 1.38629 1.38629 1.38629 1.38629
9904 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
9905 41 3.30705 0.14631 3.36166 2.73626 41 - -
9906 1.38629 1.38629 1.38629 1.38629
9907 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
9908 42 0.15719 3.27118 2.73043 3.16274 42 - -
9909 1.38629 1.38629 1.38629 1.38629
9910 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
9911 43 2.97980 2.52563 3.03204 0.19727 43 - -
9912 1.38629 1.38629 1.38629 1.38629
9913 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
9914 44 0.15719 3.27118 2.73043 3.16274 44 - -
9915 1.38629 1.38629 1.38629 1.38629
9916 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
9917 45 2.97980 2.52563 3.03204 0.19727 45 - -
9918 1.38629 1.38629 1.38629 1.38629
9919 0.01980 3.93183 * 1.46634 0.26236 0.00000 *
9920 //
9921 HMMER3/b [3.0 | March 2010]
9922 NAME 4_LSU_Oomycota_4_LSU_start_sixteenb_long
9923 LENG 45
9924 ALPH DNA
9925 RF no
9926 CS no
9927 MAP yes
9928 DATE Tue Jan 24 11:05:04 2012
9929 NSEQ 3
9930 EFFN 3.000000
9931 CKSUM 1405176074
9932 STATS LOCAL MSV -7.8729 0.72043
9933 STATS LOCAL VITERBI -7.7606 0.72043
9934 STATS LOCAL FORWARD -4.1703 0.72043
9935 HMM A C G T
9936 m->m m->i m->d i->m i->i d->m d->d
9937 COMPO 1.21871 1.53500 1.44288 1.37559
9938 1.38629 1.38629 1.38629 1.38629
9939 0.03922 3.95124 3.95124 1.46634 0.26236 0.00000 *
9940 1 0.15719 3.27118 2.73043 3.16274 1 - -
9941 1.38629 1.38629 1.38629 1.38629
9942 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
9943 2 2.97980 2.52563 3.03204 0.19727 2 - -
9944 1.38629 1.38629 1.38629 1.38629
9945 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
9946 3 2.97980 2.52563 3.03204 0.19727 3 - -
9947 1.38629 1.38629 1.38629 1.38629
9948 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
9949 4 2.86982 3.47591 0.13017 3.36931 4 - -
9950 1.38629 1.38629 1.38629 1.38629
9951 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
9952 5 2.86982 3.47591 0.13017 3.36931 5 - -
9953 1.38629 1.38629 1.38629 1.38629
9954 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
9955 6 0.15719 3.27118 2.73043 3.16274 6 - -
9956 1.38629 1.38629 1.38629 1.38629
9957 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
9958 7 3.30705 0.14631 3.36166 2.73626 7 - -
9959 1.38629 1.38629 1.38629 1.38629
9960 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
9961 8 3.30705 0.14631 3.36166 2.73626 8 - -
9962 1.38629 1.38629 1.38629 1.38629
9963 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
9964 9 2.97980 2.52563 3.03204 0.19727 9 - -
9965 1.38629 1.38629 1.38629 1.38629
9966 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
9967 10 2.86982 3.47591 0.13017 3.36931 10 - -
9968 1.38629 1.38629 1.38629 1.38629
9969 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
9970 11 0.15719 3.27118 2.73043 3.16274 11 - -
9971 1.38629 1.38629 1.38629 1.38629
9972 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
9973 12 2.97980 2.52563 3.03204 0.19727 12 - -
9974 1.38629 1.38629 1.38629 1.38629
9975 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
9976 13 0.15719 3.27118 2.73043 3.16274 13 - -
9977 1.38629 1.38629 1.38629 1.38629
9978 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
9979 14 2.97980 2.52563 3.03204 0.19727 14 - -
9980 1.38629 1.38629 1.38629 1.38629
9981 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
9982 15 3.30705 0.14631 3.36166 2.73626 15 - -
9983 1.38629 1.38629 1.38629 1.38629
9984 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
9985 16 0.15719 3.27118 2.73043 3.16274 16 - -
9986 1.38629 1.38629 1.38629 1.38629
9987 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
9988 17 2.86982 3.47591 0.13017 3.36931 17 - -
9989 1.38629 1.38629 1.38629 1.38629
9990 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
9991 18 2.86982 3.47591 0.13017 3.36931 18 - -
9992 1.38629 1.38629 1.38629 1.38629
9993 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
9994 19 3.30705 0.14631 3.36166 2.73626 19 - -
9995 1.38629 1.38629 1.38629 1.38629
9996 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
9997 20 0.15719 3.27118 2.73043 3.16274 20 - -
9998 1.38629 1.38629 1.38629 1.38629
9999 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
10000 21 0.15719 3.27118 2.73043 3.16274 21 - -
10001 1.38629 1.38629 1.38629 1.38629
10002 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
10003 22 2.86982 3.47591 0.13017 3.36931 22 - -
10004 1.38629 1.38629 1.38629 1.38629
10005 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
10006 23 0.15719 3.27118 2.73043 3.16274 23 - -
10007 1.38629 1.38629 1.38629 1.38629
10008 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
10009 24 2.97980 2.52563 3.03204 0.19727 24 - -
10010 1.38629 1.38629 1.38629 1.38629
10011 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
10012 25 2.97980 2.52563 3.03204 0.19727 25 - -
10013 1.38629 1.38629 1.38629 1.38629
10014 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
10015 26 0.15719 3.27118 2.73043 3.16274 26 - -
10016 1.38629 1.38629 1.38629 1.38629
10017 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
10018 27 3.30705 0.14631 3.36166 2.73626 27 - -
10019 1.38629 1.38629 1.38629 1.38629
10020 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
10021 28 3.30705 0.14631 3.36166 2.73626 28 - -
10022 1.38629 1.38629 1.38629 1.38629
10023 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
10024 29 2.86982 3.47591 0.13017 3.36931 29 - -
10025 1.38629 1.38629 1.38629 1.38629
10026 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
10027 30 3.30705 0.14631 3.36166 2.73626 30 - -
10028 1.38629 1.38629 1.38629 1.38629
10029 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
10030 31 2.86982 3.47591 0.13017 3.36931 31 - -
10031 1.38629 1.38629 1.38629 1.38629
10032 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
10033 32 2.97980 2.52563 3.03204 0.19727 32 - -
10034 1.38629 1.38629 1.38629 1.38629
10035 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
10036 33 2.86982 3.47591 0.13017 3.36931 33 - -
10037 1.38629 1.38629 1.38629 1.38629
10038 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
10039 34 0.15719 3.27118 2.73043 3.16274 34 - -
10040 1.38629 1.38629 1.38629 1.38629
10041 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
10042 35 0.15719 3.27118 2.73043 3.16274 35 - -
10043 1.38629 1.38629 1.38629 1.38629
10044 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
10045 36 3.30705 0.14631 3.36166 2.73626 36 - -
10046 1.38629 1.38629 1.38629 1.38629
10047 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
10048 37 2.97980 2.52563 3.03204 0.19727 37 - -
10049 1.38629 1.38629 1.38629 1.38629
10050 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
10051 38 2.97980 2.52563 3.03204 0.19727 38 - -
10052 1.38629 1.38629 1.38629 1.38629
10053 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
10054 39 0.15719 3.27118 2.73043 3.16274 39 - -
10055 1.38629 1.38629 1.38629 1.38629
10056 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
10057 40 2.97980 2.52563 3.03204 0.19727 40 - -
10058 1.38629 1.38629 1.38629 1.38629
10059 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
10060 41 2.86982 3.47591 0.13017 3.36931 41 - -
10061 1.38629 1.38629 1.38629 1.38629
10062 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
10063 42 3.30705 0.14631 3.36166 2.73626 42 - -
10064 1.38629 1.38629 1.38629 1.38629
10065 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
10066 43 0.15719 3.27118 2.73043 3.16274 43 - -
10067 1.38629 1.38629 1.38629 1.38629
10068 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
10069 44 2.97980 2.52563 3.03204 0.19727 44 - -
10070 1.38629 1.38629 1.38629 1.38629
10071 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
10072 45 0.15719 3.27118 2.73043 3.16274 45 - -
10073 1.38629 1.38629 1.38629 1.38629
10074 0.01980 3.93183 * 1.46634 0.26236 0.00000 *
10075 //
10076 HMMER3/b [3.0 | March 2010]
10077 NAME 4_LSU_Oomycota_4_LSU_start_ten_long
10078 LENG 45
10079 ALPH DNA
10080 RF no
10081 CS no
10082 MAP yes
10083 DATE Tue Jan 24 11:03:49 2012
10084 NSEQ 3
10085 EFFN 3.000000
10086 CKSUM 199962319
10087 STATS LOCAL MSV -7.9029 0.72024
10088 STATS LOCAL VITERBI -7.5957 0.72024
10089 STATS LOCAL FORWARD -4.0138 0.72024
10090 HMM A C G T
10091 m->m m->i m->d i->m i->i d->m d->d
10092 COMPO 1.11432 1.39839 1.51667 1.58267
10093 1.38629 1.38629 1.38629 1.38629
10094 0.03922 3.95124 3.95124 1.46634 0.26236 0.00000 *
10095 1 0.15719 3.27118 2.73043 3.16274 1 - -
10096 1.38629 1.38629 1.38629 1.38629
10097 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
10098 2 0.15719 3.27118 2.73043 3.16274 2 - -
10099 1.38629 1.38629 1.38629 1.38629
10100 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
10101 3 3.30705 0.14631 3.36166 2.73626 3 - -
10102 1.38629 1.38629 1.38629 1.38629
10103 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
10104 4 2.86982 3.47591 0.13017 3.36931 4 - -
10105 1.38629 1.38629 1.38629 1.38629
10106 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
10107 5 2.86982 3.47591 0.13017 3.36931 5 - -
10108 1.38629 1.38629 1.38629 1.38629
10109 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
10110 6 0.15719 3.27118 2.73043 3.16274 6 - -
10111 1.38629 1.38629 1.38629 1.38629
10112 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
10113 7 3.30705 0.14631 3.36166 2.73626 7 - -
10114 1.38629 1.38629 1.38629 1.38629
10115 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
10116 8 3.30705 0.14631 3.36166 2.73626 8 - -
10117 1.38629 1.38629 1.38629 1.38629
10118 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
10119 9 2.97980 2.52563 3.03204 0.19727 9 - -
10120 1.38629 1.38629 1.38629 1.38629
10121 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
10122 10 2.86982 3.47591 0.13017 3.36931 10 - -
10123 1.38629 1.38629 1.38629 1.38629
10124 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
10125 11 0.15719 3.27118 2.73043 3.16274 11 - -
10126 1.38629 1.38629 1.38629 1.38629
10127 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
10128 12 2.97980 2.52563 3.03204 0.19727 12 - -
10129 1.38629 1.38629 1.38629 1.38629
10130 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
10131 13 0.15719 3.27118 2.73043 3.16274 13 - -
10132 1.38629 1.38629 1.38629 1.38629
10133 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
10134 14 2.97980 2.52563 3.03204 0.19727 14 - -
10135 1.38629 1.38629 1.38629 1.38629
10136 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
10137 15 3.30705 0.14631 3.36166 2.73626 15 - -
10138 1.38629 1.38629 1.38629 1.38629
10139 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
10140 16 0.15719 3.27118 2.73043 3.16274 16 - -
10141 1.38629 1.38629 1.38629 1.38629
10142 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
10143 17 2.86982 3.47591 0.13017 3.36931 17 - -
10144 1.38629 1.38629 1.38629 1.38629
10145 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
10146 18 2.86982 3.47591 0.13017 3.36931 18 - -
10147 1.38629 1.38629 1.38629 1.38629
10148 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
10149 19 3.30705 0.14631 3.36166 2.73626 19 - -
10150 1.38629 1.38629 1.38629 1.38629
10151 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
10152 20 0.15719 3.27118 2.73043 3.16274 20 - -
10153 1.38629 1.38629 1.38629 1.38629
10154 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
10155 21 0.15719 3.27118 2.73043 3.16274 21 - -
10156 1.38629 1.38629 1.38629 1.38629
10157 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
10158 22 2.86982 3.47591 0.13017 3.36931 22 - -
10159 1.38629 1.38629 1.38629 1.38629
10160 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
10161 23 0.15719 3.27118 2.73043 3.16274 23 - -
10162 1.38629 1.38629 1.38629 1.38629
10163 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
10164 24 2.97980 2.52563 3.03204 0.19727 24 - -
10165 1.38629 1.38629 1.38629 1.38629
10166 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
10167 25 2.97980 2.52563 3.03204 0.19727 25 - -
10168 1.38629 1.38629 1.38629 1.38629
10169 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
10170 26 0.15719 3.27118 2.73043 3.16274 26 - -
10171 1.38629 1.38629 1.38629 1.38629
10172 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
10173 27 3.30705 0.14631 3.36166 2.73626 27 - -
10174 1.38629 1.38629 1.38629 1.38629
10175 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
10176 28 3.30705 0.14631 3.36166 2.73626 28 - -
10177 1.38629 1.38629 1.38629 1.38629
10178 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
10179 29 3.30705 0.14631 3.36166 2.73626 29 - -
10180 1.38629 1.38629 1.38629 1.38629
10181 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
10182 30 2.86982 3.47591 0.13017 3.36931 30 - -
10183 1.38629 1.38629 1.38629 1.38629
10184 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
10185 31 3.30705 0.14631 3.36166 2.73626 31 - -
10186 1.38629 1.38629 1.38629 1.38629
10187 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
10188 32 2.97980 2.52563 3.03204 0.19727 32 - -
10189 1.38629 1.38629 1.38629 1.38629
10190 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
10191 33 2.86982 3.47591 0.13017 3.36931 33 - -
10192 1.38629 1.38629 1.38629 1.38629
10193 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
10194 34 0.15719 3.27118 2.73043 3.16274 34 - -
10195 1.38629 1.38629 1.38629 1.38629
10196 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
10197 35 0.15719 3.27118 2.73043 3.16274 35 - -
10198 1.38629 1.38629 1.38629 1.38629
10199 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
10200 36 3.30705 0.14631 3.36166 2.73626 36 - -
10201 1.38629 1.38629 1.38629 1.38629
10202 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
10203 37 2.97980 2.52563 3.03204 0.19727 37 - -
10204 1.38629 1.38629 1.38629 1.38629
10205 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
10206 38 2.97980 2.52563 3.03204 0.19727 38 - -
10207 1.38629 1.38629 1.38629 1.38629
10208 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
10209 39 0.15719 3.27118 2.73043 3.16274 39 - -
10210 1.38629 1.38629 1.38629 1.38629
10211 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
10212 40 0.15719 3.27118 2.73043 3.16274 40 - -
10213 1.38629 1.38629 1.38629 1.38629
10214 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
10215 41 2.86982 3.47591 0.13017 3.36931 41 - -
10216 1.38629 1.38629 1.38629 1.38629
10217 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
10218 42 3.30705 0.14631 3.36166 2.73626 42 - -
10219 1.38629 1.38629 1.38629 1.38629
10220 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
10221 43 0.15719 3.27118 2.73043 3.16274 43 - -
10222 1.38629 1.38629 1.38629 1.38629
10223 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
10224 44 2.97980 2.52563 3.03204 0.19727 44 - -
10225 1.38629 1.38629 1.38629 1.38629
10226 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
10227 45 0.15719 3.27118 2.73043 3.16274 45 - -
10228 1.38629 1.38629 1.38629 1.38629
10229 0.01980 3.93183 * 1.46634 0.26236 0.00000 *
10230 //
10231 HMMER3/b [3.0 | March 2010]
10232 NAME 4_LSU_Oomycota_4_LSU_start_thirteen_long
10233 LENG 45
10234 ALPH DNA
10235 RF no
10236 CS no
10237 MAP yes
10238 DATE Tue Jan 24 11:04:27 2012
10239 NSEQ 5
10240 EFFN 3.305664
10241 CKSUM 121944797
10242 STATS LOCAL MSV -8.0146 0.71931
10243 STATS LOCAL VITERBI -7.7479 0.71931
10244 STATS LOCAL FORWARD -3.9997 0.71931
10245 HMM A C G T
10246 m->m m->i m->d i->m i->i d->m d->d
10247 COMPO 1.27539 1.45641 1.52589 1.30867
10248 1.38629 1.38629 1.38629 1.38629
10249 0.03700 4.00836 4.00836 1.46634 0.26236 0.00000 *
10250 1 0.14262 3.37480 2.79837 3.27595 1 - -
10251 1.38629 1.38629 1.38629 1.38629
10252 0.03700 4.00836 4.00836 1.46634 0.26236 1.09861 0.40547
10253 2 3.08310 2.59163 3.13146 0.17957 2 - -
10254 1.38629 1.38629 1.38629 1.38629
10255 0.03700 4.00836 4.00836 1.46634 0.26236 1.09861 0.40547
10256 3 3.08310 2.59163 3.13146 0.17957 3 - -
10257 1.38629 1.38629 1.38629 1.38629
10258 0.03700 4.00836 4.00836 1.46634 0.26236 1.09861 0.40547
10259 4 2.94371 3.58221 0.11777 3.48630 4 - -
10260 1.38629 1.38629 1.38629 1.38629
10261 0.03700 4.00836 4.00836 1.46634 0.26236 1.09861 0.40547
10262 5 2.94371 3.58221 0.11777 3.48630 5 - -
10263 1.38629 1.38629 1.38629 1.38629
10264 0.03700 4.00836 4.00836 1.46634 0.26236 1.09861 0.40547
10265 6 0.14262 3.37480 2.79837 3.27595 6 - -
10266 1.38629 1.38629 1.38629 1.38629
10267 0.03700 4.00836 4.00836 1.46634 0.26236 1.09861 0.40547
10268 7 3.42681 0.13096 3.47654 2.82441 7 - -
10269 1.38629 1.38629 1.38629 1.38629
10270 0.03700 4.00836 4.00836 1.46634 0.26236 1.09861 0.40547
10271 8 3.42681 0.13096 3.47654 2.82441 8 - -
10272 1.38629 1.38629 1.38629 1.38629
10273 0.03700 4.00836 4.00836 1.46634 0.26236 1.09861 0.40547
10274 9 3.08310 2.59163 3.13146 0.17957 9 - -
10275 1.38629 1.38629 1.38629 1.38629
10276 0.03700 4.00836 4.00836 1.46634 0.26236 1.09861 0.40547
10277 10 2.94371 3.58221 0.11777 3.48630 10 - -
10278 1.38629 1.38629 1.38629 1.38629
10279 0.03700 4.00836 4.00836 1.46634 0.26236 1.09861 0.40547
10280 11 0.14262 3.37480 2.79837 3.27595 11 - -
10281 1.38629 1.38629 1.38629 1.38629
10282 0.03700 4.00836 4.00836 1.46634 0.26236 1.09861 0.40547
10283 12 3.08310 2.59163 3.13146 0.17957 12 - -
10284 1.38629 1.38629 1.38629 1.38629
10285 0.03700 4.00836 4.00836 1.46634 0.26236 1.09861 0.40547
10286 13 3.08310 2.59163 3.13146 0.17957 13 - -
10287 1.38629 1.38629 1.38629 1.38629
10288 0.03700 4.00836 4.00836 1.46634 0.26236 1.09861 0.40547
10289 14 3.08310 2.59163 3.13146 0.17957 14 - -
10290 1.38629 1.38629 1.38629 1.38629
10291 0.03700 4.00836 4.00836 1.46634 0.26236 1.09861 0.40547
10292 15 3.42681 0.13096 3.47654 2.82441 15 - -
10293 1.38629 1.38629 1.38629 1.38629
10294 0.03700 4.00836 4.00836 1.46634 0.26236 1.09861 0.40547
10295 16 0.14262 3.37480 2.79837 3.27595 16 - -
10296 1.38629 1.38629 1.38629 1.38629
10297 0.03700 4.00836 4.00836 1.46634 0.26236 1.09861 0.40547
10298 17 2.94371 3.58221 0.11777 3.48630 17 - -
10299 1.38629 1.38629 1.38629 1.38629
10300 0.03700 4.00836 4.00836 1.46634 0.26236 1.09861 0.40547
10301 18 2.94371 3.58221 0.11777 3.48630 18 - -
10302 1.38629 1.38629 1.38629 1.38629
10303 0.03700 4.00836 4.00836 1.46634 0.26236 1.09861 0.40547
10304 19 3.42681 0.13096 3.47654 2.82441 19 - -
10305 1.38629 1.38629 1.38629 1.38629
10306 0.03700 4.00836 4.00836 1.46634 0.26236 1.09861 0.40547
10307 20 0.14262 3.37480 2.79837 3.27595 20 - -
10308 1.38629 1.38629 1.38629 1.38629
10309 0.03700 4.00836 4.00836 1.46634 0.26236 1.09861 0.40547
10310 21 0.14262 3.37480 2.79837 3.27595 21 - -
10311 1.38629 1.38629 1.38629 1.38629
10312 0.03700 4.00836 4.00836 1.46634 0.26236 1.09861 0.40547
10313 22 2.94371 3.58221 0.11777 3.48630 22 - -
10314 1.38629 1.38629 1.38629 1.38629
10315 0.03700 4.00836 4.00836 1.46634 0.26236 1.09861 0.40547
10316 23 0.14262 3.37480 2.79837 3.27595 23 - -
10317 1.38629 1.38629 1.38629 1.38629
10318 0.03700 4.00836 4.00836 1.46634 0.26236 1.09861 0.40547
10319 24 3.08310 2.59163 3.13146 0.17957 24 - -
10320 1.38629 1.38629 1.38629 1.38629
10321 0.03700 4.00836 4.00836 1.46634 0.26236 1.09861 0.40547
10322 25 3.08310 2.59163 3.13146 0.17957 25 - -
10323 1.38629 1.38629 1.38629 1.38629
10324 0.03700 4.00836 4.00836 1.46634 0.26236 1.09861 0.40547
10325 26 3.08310 2.59163 3.13146 0.17957 26 - -
10326 1.38629 1.38629 1.38629 1.38629
10327 0.03700 4.00836 4.00836 1.46634 0.26236 1.09861 0.40547
10328 27 3.42681 0.13096 3.47654 2.82441 27 - -
10329 1.38629 1.38629 1.38629 1.38629
10330 0.03700 4.00836 4.00836 1.46634 0.26236 1.09861 0.40547
10331 28 3.42681 0.13096 3.47654 2.82441 28 - -
10332 1.38629 1.38629 1.38629 1.38629
10333 0.03700 4.00836 4.00836 1.46634 0.26236 1.09861 0.40547
10334 29 3.42681 0.13096 3.47654 2.82441 29 - -
10335 1.38629 1.38629 1.38629 1.38629
10336 0.03700 4.00836 4.00836 1.46634 0.26236 1.09861 0.40547
10337 30 2.94371 3.58221 0.11777 3.48630 30 - -
10338 1.38629 1.38629 1.38629 1.38629
10339 0.03700 4.00836 4.00836 1.46634 0.26236 1.09861 0.40547
10340 31 3.42681 0.13096 3.47654 2.82441 31 - -
10341 1.38629 1.38629 1.38629 1.38629
10342 0.03700 4.00836 4.00836 1.46634 0.26236 1.09861 0.40547
10343 32 3.08310 2.59163 3.13146 0.17957 32 - -
10344 1.38629 1.38629 1.38629 1.38629
10345 0.03700 4.00836 4.00836 1.46634 0.26236 1.09861 0.40547
10346 33 2.94371 3.58221 0.11777 3.48630 33 - -
10347 1.38629 1.38629 1.38629 1.38629
10348 0.03700 4.00836 4.00836 1.46634 0.26236 1.09861 0.40547
10349 34 0.14262 3.37480 2.79837 3.27595 34 - -
10350 1.38629 1.38629 1.38629 1.38629
10351 0.03700 4.00836 4.00836 1.46634 0.26236 1.09861 0.40547
10352 35 0.14262 3.37480 2.79837 3.27595 35 - -
10353 1.38629 1.38629 1.38629 1.38629
10354 0.03700 4.00836 4.00836 1.46634 0.26236 1.09861 0.40547
10355 36 3.42681 0.13096 3.47654 2.82441 36 - -
10356 1.38629 1.38629 1.38629 1.38629
10357 0.03700 4.00836 4.00836 1.46634 0.26236 1.09861 0.40547
10358 37 3.08310 2.59163 3.13146 0.17957 37 - -
10359 1.38629 1.38629 1.38629 1.38629
10360 0.03700 4.00836 4.00836 1.46634 0.26236 1.09861 0.40547
10361 38 3.08310 2.59163 3.13146 0.17957 38 - -
10362 1.38629 1.38629 1.38629 1.38629
10363 0.03700 4.00836 4.00836 1.46634 0.26236 1.09861 0.40547
10364 39 0.14262 3.37480 2.79837 3.27595 39 - -
10365 1.38629 1.38629 1.38629 1.38629
10366 0.03700 4.00836 4.00836 1.46634 0.26236 1.09861 0.40547
10367 40 0.14262 3.37480 2.79837 3.27595 40 - -
10368 1.38629 1.38629 1.38629 1.38629
10369 0.03700 4.00836 4.00836 1.46634 0.26236 1.09861 0.40547
10370 41 2.94371 3.58221 0.11777 3.48630 41 - -
10371 1.38629 1.38629 1.38629 1.38629
10372 0.03700 4.00836 4.00836 1.46634 0.26236 1.09861 0.40547
10373 42 3.42681 0.13096 3.47654 2.82441 42 - -
10374 1.38629 1.38629 1.38629 1.38629
10375 0.03700 4.00836 4.00836 1.46634 0.26236 1.09861 0.40547
10376 43 0.14262 3.37480 2.79837 3.27595 43 - -
10377 1.38629 1.38629 1.38629 1.38629
10378 0.03700 4.00836 4.00836 1.46634 0.26236 1.09861 0.40547
10379 44 3.08310 2.59163 3.13146 0.17957 44 - -
10380 1.38629 1.38629 1.38629 1.38629
10381 0.03700 4.00836 4.00836 1.46634 0.26236 1.09861 0.40547
10382 45 0.14262 3.37480 2.79837 3.27595 45 - -
10383 1.38629 1.38629 1.38629 1.38629
10384 0.01867 3.99003 * 1.46634 0.26236 0.00000 *
10385 //
10386 HMMER3/b [3.0 | March 2010]
10387 NAME 4_LSU_Oomycota_4_LSU_start_three_long
10388 LENG 45
10389 ALPH DNA
10390 RF no
10391 CS no
10392 MAP yes
10393 DATE Tue Jan 24 11:02:48 2012
10394 NSEQ 13
10395 EFFN 3.297607
10396 CKSUM 517071543
10397 STATS LOCAL MSV -8.1345 0.71932
10398 STATS LOCAL VITERBI -7.5842 0.71932
10399 STATS LOCAL FORWARD -4.1111 0.71932
10400 HMM A C G T
10401 m->m m->i m->d i->m i->i d->m d->d
10402 COMPO 1.16392 1.45927 1.60535 1.36838
10403 1.38629 1.38629 1.38629 1.38629
10404 0.03706 4.00690 4.00690 1.46634 0.26236 0.00000 *
10405 1 3.08048 2.58997 3.12894 0.17999 1 - -
10406 1.38629 1.38629 1.38629 1.38629
10407 0.03706 4.00690 4.00690 1.46634 0.26236 1.09861 0.40547
10408 2 3.08048 2.58997 3.12894 0.17999 2 - -
10409 1.38629 1.38629 1.38629 1.38629
10410 0.03706 4.00690 4.00690 1.46634 0.26236 1.09861 0.40547
10411 3 3.08048 2.58997 3.12894 0.17999 3 - -
10412 1.38629 1.38629 1.38629 1.38629
10413 0.03706 4.00690 4.00690 1.46634 0.26236 1.09861 0.40547
10414 4 2.94190 3.57957 0.11806 3.48339 4 - -
10415 1.38629 1.38629 1.38629 1.38629
10416 0.03706 4.00690 4.00690 1.46634 0.26236 1.09861 0.40547
10417 5 2.94190 3.57957 0.11806 3.48339 5 - -
10418 1.38629 1.38629 1.38629 1.38629
10419 0.03706 4.00690 4.00690 1.46634 0.26236 1.09861 0.40547
10420 6 0.14296 3.37220 2.79669 3.27310 6 - -
10421 1.38629 1.38629 1.38629 1.38629
10422 0.03706 4.00690 4.00690 1.46634 0.26236 1.09861 0.40547
10423 7 3.42382 0.13132 3.47367 2.82223 7 - -
10424 1.38629 1.38629 1.38629 1.38629
10425 0.03706 4.00690 4.00690 1.46634 0.26236 1.09861 0.40547
10426 8 3.42382 0.13132 3.47367 2.82223 8 - -
10427 1.38629 1.38629 1.38629 1.38629
10428 0.03706 4.00690 4.00690 1.46634 0.26236 1.09861 0.40547
10429 9 3.08048 2.58997 3.12894 0.17999 9 - -
10430 1.38629 1.38629 1.38629 1.38629
10431 0.03706 4.00690 4.00690 1.46634 0.26236 1.09861 0.40547
10432 10 2.94190 3.57957 0.11806 3.48339 10 - -
10433 1.38629 1.38629 1.38629 1.38629
10434 0.03706 4.00690 4.00690 1.46634 0.26236 1.09861 0.40547
10435 11 0.14296 3.37220 2.79669 3.27310 11 - -
10436 1.38629 1.38629 1.38629 1.38629
10437 0.03706 4.00690 4.00690 1.46634 0.26236 1.09861 0.40547
10438 12 3.08048 2.58997 3.12894 0.17999 12 - -
10439 1.38629 1.38629 1.38629 1.38629
10440 0.03706 4.00690 4.00690 1.46634 0.26236 1.09861 0.40547
10441 13 0.14296 3.37220 2.79669 3.27310 13 - -
10442 1.38629 1.38629 1.38629 1.38629
10443 0.03706 4.00690 4.00690 1.46634 0.26236 1.09861 0.40547
10444 14 3.08048 2.58997 3.12894 0.17999 14 - -
10445 1.38629 1.38629 1.38629 1.38629
10446 0.03706 4.00690 4.00690 1.46634 0.26236 1.09861 0.40547
10447 15 3.42382 0.13132 3.47367 2.82223 15 - -
10448 1.38629 1.38629 1.38629 1.38629
10449 0.03706 4.00690 4.00690 1.46634 0.26236 1.09861 0.40547
10450 16 0.14296 3.37220 2.79669 3.27310 16 - -
10451 1.38629 1.38629 1.38629 1.38629
10452 0.03706 4.00690 4.00690 1.46634 0.26236 1.09861 0.40547
10453 17 2.94190 3.57957 0.11806 3.48339 17 - -
10454 1.38629 1.38629 1.38629 1.38629
10455 0.03706 4.00690 4.00690 1.46634 0.26236 1.09861 0.40547
10456 18 0.14296 3.37220 2.79669 3.27310 18 - -
10457 1.38629 1.38629 1.38629 1.38629
10458 0.03706 4.00690 4.00690 1.46634 0.26236 1.09861 0.40547
10459 19 3.42382 0.13132 3.47367 2.82223 19 - -
10460 1.38629 1.38629 1.38629 1.38629
10461 0.03706 4.00690 4.00690 1.46634 0.26236 1.09861 0.40547
10462 20 0.14296 3.37220 2.79669 3.27310 20 - -
10463 1.38629 1.38629 1.38629 1.38629
10464 0.03706 4.00690 4.00690 1.46634 0.26236 1.09861 0.40547
10465 21 0.14296 3.37220 2.79669 3.27310 21 - -
10466 1.38629 1.38629 1.38629 1.38629
10467 0.03706 4.00690 4.00690 1.46634 0.26236 1.09861 0.40547
10468 22 2.94190 3.57957 0.11806 3.48339 22 - -
10469 1.38629 1.38629 1.38629 1.38629
10470 0.03706 4.00690 4.00690 1.46634 0.26236 1.09861 0.40547
10471 23 0.14296 3.37220 2.79669 3.27310 23 - -
10472 1.38629 1.38629 1.38629 1.38629
10473 0.03706 4.00690 4.00690 1.46634 0.26236 1.09861 0.40547
10474 24 3.42382 0.13132 3.47367 2.82223 24 - -
10475 1.38629 1.38629 1.38629 1.38629
10476 0.03706 4.00690 4.00690 1.46634 0.26236 1.09861 0.40547
10477 25 3.08048 2.58997 3.12894 0.17999 25 - -
10478 1.38629 1.38629 1.38629 1.38629
10479 0.03706 4.00690 4.00690 1.46634 0.26236 1.09861 0.40547
10480 26 0.14296 3.37220 2.79669 3.27310 26 - -
10481 1.38629 1.38629 1.38629 1.38629
10482 0.03706 4.00690 4.00690 1.46634 0.26236 1.09861 0.40547
10483 27 3.42382 0.13132 3.47367 2.82223 27 - -
10484 1.38629 1.38629 1.38629 1.38629
10485 0.03706 4.00690 4.00690 1.46634 0.26236 1.09861 0.40547
10486 28 3.42382 0.13132 3.47367 2.82223 28 - -
10487 1.38629 1.38629 1.38629 1.38629
10488 0.03706 4.00690 4.00690 1.46634 0.26236 1.09861 0.40547
10489 29 3.42382 0.13132 3.47367 2.82223 29 - -
10490 1.38629 1.38629 1.38629 1.38629
10491 0.03706 4.00690 4.00690 1.46634 0.26236 1.09861 0.40547
10492 30 2.94190 3.57957 0.11806 3.48339 30 - -
10493 1.38629 1.38629 1.38629 1.38629
10494 0.03706 4.00690 4.00690 1.46634 0.26236 1.09861 0.40547
10495 31 3.42382 0.13132 3.47367 2.82223 31 - -
10496 1.38629 1.38629 1.38629 1.38629
10497 0.03706 4.00690 4.00690 1.46634 0.26236 1.09861 0.40547
10498 32 3.08048 2.58997 3.12894 0.17999 32 - -
10499 1.38629 1.38629 1.38629 1.38629
10500 0.03706 4.00690 4.00690 1.46634 0.26236 1.09861 0.40547
10501 33 2.94190 3.57957 0.11806 3.48339 33 - -
10502 1.38629 1.38629 1.38629 1.38629
10503 0.03706 4.00690 4.00690 1.46634 0.26236 1.09861 0.40547
10504 34 0.14296 3.37220 2.79669 3.27310 34 - -
10505 1.38629 1.38629 1.38629 1.38629
10506 0.03706 4.00690 4.00690 1.46634 0.26236 1.09861 0.40547
10507 35 0.14296 3.37220 2.79669 3.27310 35 - -
10508 1.38629 1.38629 1.38629 1.38629
10509 0.03706 4.00690 4.00690 1.46634 0.26236 1.09861 0.40547
10510 36 3.08048 2.58997 3.12894 0.17999 36 - -
10511 1.38629 1.38629 1.38629 1.38629
10512 0.03706 4.00690 4.00690 1.46634 0.26236 1.09861 0.40547
10513 37 3.08048 2.58997 3.12894 0.17999 37 - -
10514 1.38629 1.38629 1.38629 1.38629
10515 0.03706 4.00690 4.00690 1.46634 0.26236 1.09861 0.40547
10516 38 3.08048 2.58997 3.12894 0.17999 38 - -
10517 1.38629 1.38629 1.38629 1.38629
10518 0.03706 4.00690 4.00690 1.46634 0.26236 1.09861 0.40547
10519 39 0.14296 3.37220 2.79669 3.27310 39 - -
10520 1.38629 1.38629 1.38629 1.38629
10521 0.03706 4.00690 4.00690 1.46634 0.26236 1.09861 0.40547
10522 40 0.14296 3.37220 2.79669 3.27310 40 - -
10523 1.38629 1.38629 1.38629 1.38629
10524 0.03706 4.00690 4.00690 1.46634 0.26236 1.09861 0.40547
10525 41 2.94190 3.57957 0.11806 3.48339 41 - -
10526 1.38629 1.38629 1.38629 1.38629
10527 0.03706 4.00690 4.00690 1.46634 0.26236 1.09861 0.40547
10528 42 3.42382 0.13132 3.47367 2.82223 42 - -
10529 1.38629 1.38629 1.38629 1.38629
10530 0.03706 4.00690 4.00690 1.46634 0.26236 1.09861 0.40547
10531 43 0.14296 3.37220 2.79669 3.27310 43 - -
10532 1.38629 1.38629 1.38629 1.38629
10533 0.03706 4.00690 4.00690 1.46634 0.26236 1.09861 0.40547
10534 44 3.08048 2.58997 3.12894 0.17999 44 - -
10535 1.38629 1.38629 1.38629 1.38629
10536 0.03706 4.00690 4.00690 1.46634 0.26236 1.09861 0.40547
10537 45 0.14296 3.37220 2.79669 3.27310 45 - -
10538 1.38629 1.38629 1.38629 1.38629
10539 0.01870 3.98854 * 1.46634 0.26236 0.00000 *
10540 //
10541 HMMER3/b [3.0 | March 2010]
10542 NAME 4_LSU_Oomycota_4_LSU_start_twelve_long
10543 LENG 45
10544 ALPH DNA
10545 RF no
10546 CS no
10547 MAP yes
10548 DATE Tue Jan 24 11:04:16 2012
10549 NSEQ 3
10550 EFFN 3.000000
10551 CKSUM 1474323428
10552 STATS LOCAL MSV -7.8855 0.72052
10553 STATS LOCAL VITERBI -7.6818 0.72052
10554 STATS LOCAL FORWARD -4.0882 0.72052
10555 HMM A C G T
10556 m->m m->i m->d i->m i->i d->m d->d
10557 COMPO 1.16636 1.45838 1.59742 1.37250
10558 1.38629 1.38629 1.38629 1.38629
10559 0.03922 3.95124 3.95124 1.46634 0.26236 0.00000 *
10560 1 0.15719 3.27118 2.73043 3.16274 1 - -
10561 1.38629 1.38629 1.38629 1.38629
10562 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
10563 2 2.97980 2.52563 3.03204 0.19727 2 - -
10564 1.38629 1.38629 1.38629 1.38629
10565 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
10566 3 2.97980 2.52563 3.03204 0.19727 3 - -
10567 1.38629 1.38629 1.38629 1.38629
10568 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
10569 4 2.86982 3.47591 0.13017 3.36931 4 - -
10570 1.38629 1.38629 1.38629 1.38629
10571 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
10572 5 2.86982 3.47591 0.13017 3.36931 5 - -
10573 1.38629 1.38629 1.38629 1.38629
10574 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
10575 6 0.15719 3.27118 2.73043 3.16274 6 - -
10576 1.38629 1.38629 1.38629 1.38629
10577 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
10578 7 3.30705 0.14631 3.36166 2.73626 7 - -
10579 1.38629 1.38629 1.38629 1.38629
10580 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
10581 8 3.30705 0.14631 3.36166 2.73626 8 - -
10582 1.38629 1.38629 1.38629 1.38629
10583 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
10584 9 2.97980 2.52563 3.03204 0.19727 9 - -
10585 1.38629 1.38629 1.38629 1.38629
10586 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
10587 10 2.86982 3.47591 0.13017 3.36931 10 - -
10588 1.38629 1.38629 1.38629 1.38629
10589 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
10590 11 0.15719 3.27118 2.73043 3.16274 11 - -
10591 1.38629 1.38629 1.38629 1.38629
10592 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
10593 12 2.97980 2.52563 3.03204 0.19727 12 - -
10594 1.38629 1.38629 1.38629 1.38629
10595 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
10596 13 0.15719 3.27118 2.73043 3.16274 13 - -
10597 1.38629 1.38629 1.38629 1.38629
10598 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
10599 14 2.97980 2.52563 3.03204 0.19727 14 - -
10600 1.38629 1.38629 1.38629 1.38629
10601 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
10602 15 3.30705 0.14631 3.36166 2.73626 15 - -
10603 1.38629 1.38629 1.38629 1.38629
10604 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
10605 16 0.15719 3.27118 2.73043 3.16274 16 - -
10606 1.38629 1.38629 1.38629 1.38629
10607 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
10608 17 2.86982 3.47591 0.13017 3.36931 17 - -
10609 1.38629 1.38629 1.38629 1.38629
10610 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
10611 18 2.86982 3.47591 0.13017 3.36931 18 - -
10612 1.38629 1.38629 1.38629 1.38629
10613 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
10614 19 3.30705 0.14631 3.36166 2.73626 19 - -
10615 1.38629 1.38629 1.38629 1.38629
10616 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
10617 20 0.15719 3.27118 2.73043 3.16274 20 - -
10618 1.38629 1.38629 1.38629 1.38629
10619 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
10620 21 0.15719 3.27118 2.73043 3.16274 21 - -
10621 1.38629 1.38629 1.38629 1.38629
10622 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
10623 22 2.86982 3.47591 0.13017 3.36931 22 - -
10624 1.38629 1.38629 1.38629 1.38629
10625 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
10626 23 0.15719 3.27118 2.73043 3.16274 23 - -
10627 1.38629 1.38629 1.38629 1.38629
10628 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
10629 24 2.97980 2.52563 3.03204 0.19727 24 - -
10630 1.38629 1.38629 1.38629 1.38629
10631 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
10632 25 2.97980 2.52563 3.03204 0.19727 25 - -
10633 1.38629 1.38629 1.38629 1.38629
10634 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
10635 26 0.15719 3.27118 2.73043 3.16274 26 - -
10636 1.38629 1.38629 1.38629 1.38629
10637 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
10638 27 3.30705 0.14631 3.36166 2.73626 27 - -
10639 1.38629 1.38629 1.38629 1.38629
10640 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
10641 28 3.30705 0.14631 3.36166 2.73626 28 - -
10642 1.38629 1.38629 1.38629 1.38629
10643 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
10644 29 3.30705 0.14631 3.36166 2.73626 29 - -
10645 1.38629 1.38629 1.38629 1.38629
10646 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
10647 30 2.86982 3.47591 0.13017 3.36931 30 - -
10648 1.38629 1.38629 1.38629 1.38629
10649 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
10650 31 3.30705 0.14631 3.36166 2.73626 31 - -
10651 1.38629 1.38629 1.38629 1.38629
10652 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
10653 32 2.97980 2.52563 3.03204 0.19727 32 - -
10654 1.38629 1.38629 1.38629 1.38629
10655 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
10656 33 2.86982 3.47591 0.13017 3.36931 33 - -
10657 1.38629 1.38629 1.38629 1.38629
10658 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
10659 34 0.15719 3.27118 2.73043 3.16274 34 - -
10660 1.38629 1.38629 1.38629 1.38629
10661 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
10662 35 0.15719 3.27118 2.73043 3.16274 35 - -
10663 1.38629 1.38629 1.38629 1.38629
10664 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
10665 36 3.30705 0.14631 3.36166 2.73626 36 - -
10666 1.38629 1.38629 1.38629 1.38629
10667 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
10668 37 2.97980 2.52563 3.03204 0.19727 37 - -
10669 1.38629 1.38629 1.38629 1.38629
10670 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
10671 38 2.97980 2.52563 3.03204 0.19727 38 - -
10672 1.38629 1.38629 1.38629 1.38629
10673 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
10674 39 0.15719 3.27118 2.73043 3.16274 39 - -
10675 1.38629 1.38629 1.38629 1.38629
10676 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
10677 40 0.15719 3.27118 2.73043 3.16274 40 - -
10678 1.38629 1.38629 1.38629 1.38629
10679 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
10680 41 2.97980 2.52563 3.03204 0.19727 41 - -
10681 1.38629 1.38629 1.38629 1.38629
10682 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
10683 42 3.30705 0.14631 3.36166 2.73626 42 - -
10684 1.38629 1.38629 1.38629 1.38629
10685 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
10686 43 0.15719 3.27118 2.73043 3.16274 43 - -
10687 1.38629 1.38629 1.38629 1.38629
10688 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
10689 44 2.97980 2.52563 3.03204 0.19727 44 - -
10690 1.38629 1.38629 1.38629 1.38629
10691 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
10692 45 0.15719 3.27118 2.73043 3.16274 45 - -
10693 1.38629 1.38629 1.38629 1.38629
10694 0.01980 3.93183 * 1.46634 0.26236 0.00000 *
10695 //
10696 HMMER3/b [3.0 | March 2010]
10697 NAME 4_LSU_Oomycota_4_LSU_start_two_long
10698 LENG 45
10699 ALPH DNA
10700 RF no
10701 CS no
10702 MAP yes
10703 DATE Tue Jan 24 11:02:40 2012
10704 NSEQ 8
10705 EFFN 3.425781
10706 CKSUM 1590920301
10707 STATS LOCAL MSV -7.4532 0.71932
10708 STATS LOCAL VITERBI -7.5721 0.71932
10709 STATS LOCAL FORWARD -4.2046 0.71932
10710 HMM A C G T
10711 m->m m->i m->d i->m i->i d->m d->d
10712 COMPO 1.19206 1.45567 1.57364 1.36308
10713 1.38629 1.38629 1.38629 1.38629
10714 0.03620 4.02994 4.02994 1.46634 0.26236 0.00000 *
10715 1 3.12148 2.61603 3.16838 0.17347 1 - -
10716 1.38629 1.38629 1.38629 1.38629
10717 0.03620 4.02994 4.02994 1.46634 0.26236 1.09861 0.40547
10718 2 3.12148 2.61603 3.16838 0.17347 2 - -
10719 1.38629 1.38629 1.38629 1.38629
10720 0.03620 4.02994 4.02994 1.46634 0.26236 1.09861 0.40547
10721 3 3.12148 2.61603 3.16838 0.17347 3 - -
10722 1.38629 1.38629 1.38629 1.38629
10723 0.03620 4.02994 4.02994 1.46634 0.26236 1.09861 0.40547
10724 4 2.97003 3.62058 0.11363 3.52868 4 - -
10725 1.38629 1.38629 1.38629 1.38629
10726 0.03620 4.02994 4.02994 1.46634 0.26236 1.09861 0.40547
10727 5 2.97003 3.62058 0.11363 3.52868 5 - -
10728 1.38629 1.38629 1.38629 1.38629
10729 0.03620 4.02994 4.02994 1.46634 0.26236 1.09861 0.40547
10730 6 0.13768 3.41271 2.82296 3.31747 6 - -
10731 1.38629 1.38629 1.38629 1.38629
10732 0.03620 4.02994 4.02994 1.46634 0.26236 1.09861 0.40547
10733 7 3.47046 0.12584 3.51832 2.85611 7 - -
10734 1.38629 1.38629 1.38629 1.38629
10735 0.03620 4.02994 4.02994 1.46634 0.26236 1.09861 0.40547
10736 8 3.47046 0.12584 3.51832 2.85611 8 - -
10737 1.38629 1.38629 1.38629 1.38629
10738 0.03620 4.02994 4.02994 1.46634 0.26236 1.09861 0.40547
10739 9 3.12148 2.61603 3.16838 0.17347 9 - -
10740 1.38629 1.38629 1.38629 1.38629
10741 0.03620 4.02994 4.02994 1.46634 0.26236 1.09861 0.40547
10742 10 2.97003 3.62058 0.11363 3.52868 10 - -
10743 1.38629 1.38629 1.38629 1.38629
10744 0.03620 4.02994 4.02994 1.46634 0.26236 1.09861 0.40547
10745 11 0.13768 3.41271 2.82296 3.31747 11 - -
10746 1.38629 1.38629 1.38629 1.38629
10747 0.03620 4.02994 4.02994 1.46634 0.26236 1.09861 0.40547
10748 12 3.12148 2.61603 3.16838 0.17347 12 - -
10749 1.38629 1.38629 1.38629 1.38629
10750 0.03620 4.02994 4.02994 1.46634 0.26236 1.09861 0.40547
10751 13 0.13768 3.41271 2.82296 3.31747 13 - -
10752 1.38629 1.38629 1.38629 1.38629
10753 0.03620 4.02994 4.02994 1.46634 0.26236 1.09861 0.40547
10754 14 3.12148 2.61603 3.16838 0.17347 14 - -
10755 1.38629 1.38629 1.38629 1.38629
10756 0.03620 4.02994 4.02994 1.46634 0.26236 1.09861 0.40547
10757 15 3.47046 0.12584 3.51832 2.85611 15 - -
10758 1.38629 1.38629 1.38629 1.38629
10759 0.03620 4.02994 4.02994 1.46634 0.26236 1.09861 0.40547
10760 16 0.13768 3.41271 2.82296 3.31747 16 - -
10761 1.38629 1.38629 1.38629 1.38629
10762 0.03620 4.02994 4.02994 1.46634 0.26236 1.09861 0.40547
10763 17 0.85736 2.53227 0.90541 2.38746 17 - -
10764 1.38629 1.38629 1.38629 1.38629
10765 0.03620 4.02994 4.02994 1.46634 0.26236 1.09861 0.40547
10766 18 2.97003 3.62058 0.11363 3.52868 18 - -
10767 1.38629 1.38629 1.38629 1.38629
10768 0.03620 4.02994 4.02994 1.46634 0.26236 1.09861 0.40547
10769 19 3.12148 2.61603 3.16838 0.17347 19 - -
10770 1.38629 1.38629 1.38629 1.38629
10771 0.03620 4.02994 4.02994 1.46634 0.26236 1.09861 0.40547
10772 20 0.13768 3.41271 2.82296 3.31747 20 - -
10773 1.38629 1.38629 1.38629 1.38629
10774 0.03620 4.02994 4.02994 1.46634 0.26236 1.09861 0.40547
10775 21 0.13768 3.41271 2.82296 3.31747 21 - -
10776 1.38629 1.38629 1.38629 1.38629
10777 0.03620 4.02994 4.02994 1.46634 0.26236 1.09861 0.40547
10778 22 2.97003 3.62058 0.11363 3.52868 22 - -
10779 1.38629 1.38629 1.38629 1.38629
10780 0.03620 4.02994 4.02994 1.46634 0.26236 1.09861 0.40547
10781 23 0.13768 3.41271 2.82296 3.31747 23 - -
10782 1.38629 1.38629 1.38629 1.38629
10783 0.03620 4.02994 4.02994 1.46634 0.26236 1.09861 0.40547
10784 24 3.47046 0.12584 3.51832 2.85611 24 - -
10785 1.38629 1.38629 1.38629 1.38629
10786 0.03620 4.02994 4.02994 1.46634 0.26236 1.09861 0.40547
10787 25 3.12148 2.61603 3.16838 0.17347 25 - -
10788 1.38629 1.38629 1.38629 1.38629
10789 0.03620 4.02994 4.02994 1.46634 0.26236 1.09861 0.40547
10790 26 0.13768 3.41271 2.82296 3.31747 26 - -
10791 1.38629 1.38629 1.38629 1.38629
10792 0.03620 4.02994 4.02994 1.46634 0.26236 1.09861 0.40547
10793 27 3.47046 0.12584 3.51832 2.85611 27 - -
10794 1.38629 1.38629 1.38629 1.38629
10795 0.03620 4.02994 4.02994 1.46634 0.26236 1.09861 0.40547
10796 28 3.47046 0.12584 3.51832 2.85611 28 - -
10797 1.38629 1.38629 1.38629 1.38629
10798 0.03620 4.02994 4.02994 1.46634 0.26236 1.09861 0.40547
10799 29 3.47046 0.12584 3.51832 2.85611 29 - -
10800 1.38629 1.38629 1.38629 1.38629
10801 0.03620 4.02994 4.02994 1.46634 0.26236 1.09861 0.40547
10802 30 2.97003 3.62058 0.11363 3.52868 30 - -
10803 1.38629 1.38629 1.38629 1.38629
10804 0.03620 4.02994 4.02994 1.46634 0.26236 1.09861 0.40547
10805 31 3.47046 0.12584 3.51832 2.85611 31 - -
10806 1.38629 1.38629 1.38629 1.38629
10807 0.03620 4.02994 4.02994 1.46634 0.26236 1.09861 0.40547
10808 32 3.12148 2.61603 3.16838 0.17347 32 - -
10809 1.38629 1.38629 1.38629 1.38629
10810 0.03620 4.02994 4.02994 1.46634 0.26236 1.09861 0.40547
10811 33 2.97003 3.62058 0.11363 3.52868 33 - -
10812 1.38629 1.38629 1.38629 1.38629
10813 0.03620 4.02994 4.02994 1.46634 0.26236 1.09861 0.40547
10814 34 0.13768 3.41271 2.82296 3.31747 34 - -
10815 1.38629 1.38629 1.38629 1.38629
10816 0.03620 4.02994 4.02994 1.46634 0.26236 1.09861 0.40547
10817 35 0.13768 3.41271 2.82296 3.31747 35 - -
10818 1.38629 1.38629 1.38629 1.38629
10819 0.03620 4.02994 4.02994 1.46634 0.26236 1.09861 0.40547
10820 36 3.47046 0.12584 3.51832 2.85611 36 - -
10821 1.38629 1.38629 1.38629 1.38629
10822 0.03620 4.02994 4.02994 1.46634 0.26236 1.09861 0.40547
10823 37 3.12148 2.61603 3.16838 0.17347 37 - -
10824 1.38629 1.38629 1.38629 1.38629
10825 0.03620 4.02994 4.02994 1.46634 0.26236 1.09861 0.40547
10826 38 3.12148 2.61603 3.16838 0.17347 38 - -
10827 1.38629 1.38629 1.38629 1.38629
10828 0.03620 4.02994 4.02994 1.46634 0.26236 1.09861 0.40547
10829 39 0.13768 3.41271 2.82296 3.31747 39 - -
10830 1.38629 1.38629 1.38629 1.38629
10831 0.03620 4.02994 4.02994 1.46634 0.26236 1.09861 0.40547
10832 40 0.13768 3.41271 2.82296 3.31747 40 - -
10833 1.38629 1.38629 1.38629 1.38629
10834 0.03620 4.02994 4.02994 1.46634 0.26236 1.09861 0.40547
10835 41 2.97003 3.62058 0.11363 3.52868 41 - -
10836 1.38629 1.38629 1.38629 1.38629
10837 0.03620 4.02994 4.02994 1.46634 0.26236 1.09861 0.40547
10838 42 3.47046 0.12584 3.51832 2.85611 42 - -
10839 1.38629 1.38629 1.38629 1.38629
10840 0.03620 4.02994 4.02994 1.46634 0.26236 1.09861 0.40547
10841 43 0.13768 3.41271 2.82296 3.31747 43 - -
10842 1.38629 1.38629 1.38629 1.38629
10843 0.03620 4.02994 4.02994 1.46634 0.26236 1.09861 0.40547
10844 44 3.12148 2.61603 3.16838 0.17347 44 - -
10845 1.38629 1.38629 1.38629 1.38629
10846 0.03620 4.02994 4.02994 1.46634 0.26236 1.09861 0.40547
10847 45 0.13768 3.41271 2.82296 3.31747 45 - -
10848 1.38629 1.38629 1.38629 1.38629
10849 0.01826 4.01201 * 1.46634 0.26236 0.00000 *
10850 //
10851 HMMER3/b [3.0 | March 2010]
10852 NAME 1_SSU_Oomycota_1_SSU_end_long
10853 LENG 45
10854 ALPH DNA
10855 RF no
10856 CS no
10857 MAP yes
10858 DATE Sat Jan 21 16:12:25 2012
10859 NSEQ 304
10860 EFFN 3.279541
10861 CKSUM 1893751502
10862 STATS LOCAL MSV -8.0320 0.71934
10863 STATS LOCAL VITERBI -7.6889 0.71934
10864 STATS LOCAL FORWARD -4.1095 0.71934
10865 HMM A C G T
10866 m->m m->i m->d i->m i->i d->m d->d
10867 COMPO 1.27125 1.62696 1.24907 1.44298
10868 1.38629 1.38629 1.38629 1.38629
10869 0.03718 4.00361 4.00361 1.46634 0.26236 0.00000 *
10870 1 0.16236 3.29644 2.63327 3.19393 1 - -
10871 1.38629 1.38629 1.38629 1.38629
10872 0.03718 4.00361 4.00361 1.46634 0.26236 1.09861 0.40547
10873 2 2.68931 3.30870 0.16605 3.02614 2 - -
10874 1.38629 1.38629 1.38629 1.38629
10875 0.03718 4.00361 4.00361 1.46634 0.26236 1.09861 0.40547
10876 3 3.07459 2.58622 3.12328 0.18095 3 - -
10877 1.38629 1.38629 1.38629 1.38629
10878 0.03718 4.00361 4.00361 1.46634 0.26236 1.09861 0.40547
10879 4 3.41707 0.13214 3.46721 2.81731 4 - -
10880 1.38629 1.38629 1.38629 1.38629
10881 0.03718 4.00361 4.00361 1.46634 0.26236 1.09861 0.40547
10882 5 2.93780 3.57362 0.11872 3.47683 5 - -
10883 1.38629 1.38629 1.38629 1.38629
10884 0.03718 4.00361 4.00361 1.46634 0.26236 1.09861 0.40547
10885 6 3.07459 2.58622 3.12328 0.18095 6 - -
10886 1.38629 1.38629 1.38629 1.38629
10887 0.03718 4.00361 4.00361 1.46634 0.26236 1.09861 0.40547
10888 7 0.14375 3.36635 2.79288 3.26670 7 - -
10889 1.38629 1.38629 1.38629 1.38629
10890 0.03718 4.00361 4.00361 1.46634 0.26236 1.09861 0.40547
10891 8 0.14375 3.36635 2.79288 3.26670 8 - -
10892 1.38629 1.38629 1.38629 1.38629
10893 0.03718 4.00361 4.00361 1.46634 0.26236 1.09861 0.40547
10894 9 3.41707 0.13214 3.46721 2.81731 9 - -
10895 1.38629 1.38629 1.38629 1.38629
10896 0.03718 4.00361 4.00361 1.46634 0.26236 1.09861 0.40547
10897 10 0.14375 3.36635 2.79288 3.26670 10 - -
10898 1.38629 1.38629 1.38629 1.38629
10899 0.03718 4.00361 4.00361 1.46634 0.26236 1.09861 0.40547
10900 11 0.15678 3.31683 2.67806 3.21534 11 - -
10901 1.38629 1.38629 1.38629 1.38629
10902 0.03718 4.00361 4.00361 1.46634 0.26236 1.09861 0.40547
10903 12 2.93780 3.57362 0.11872 3.47683 12 - -
10904 1.38629 1.38629 1.38629 1.38629
10905 0.03718 4.00361 4.00361 1.46634 0.26236 1.09861 0.40547
10906 13 2.93780 3.57362 0.11872 3.47683 13 - -
10907 1.38629 1.38629 1.38629 1.38629
10908 0.03718 4.00361 4.00361 1.46634 0.26236 1.09861 0.40547
10909 14 3.07459 2.58622 3.12328 0.18095 14 - -
10910 1.38629 1.38629 1.38629 1.38629
10911 0.03718 4.00361 4.00361 1.46634 0.26236 1.09861 0.40547
10912 15 3.07459 2.58622 3.12328 0.18095 15 - -
10913 1.38629 1.38629 1.38629 1.38629
10914 0.03718 4.00361 4.00361 1.46634 0.26236 1.09861 0.40547
10915 16 3.03126 2.47943 3.08134 0.19595 16 - -
10916 1.38629 1.38629 1.38629 1.38629
10917 0.03718 4.00361 4.00361 1.46634 0.26236 1.09861 0.40547
10918 17 3.35118 0.14643 3.40314 2.68969 17 - -
10919 1.38629 1.38629 1.38629 1.38629
10920 0.03718 4.00361 4.00361 1.46634 0.26236 1.09861 0.40547
10921 18 3.41707 0.13214 3.46721 2.81731 18 - -
10922 1.38629 1.38629 1.38629 1.38629
10923 0.03718 4.00361 4.00361 1.46634 0.26236 1.09861 0.40547
10924 19 2.93780 3.57362 0.11872 3.47683 19 - -
10925 1.38629 1.38629 1.38629 1.38629
10926 0.03718 4.00361 4.00361 1.46634 0.26236 1.09861 0.40547
10927 20 3.07459 2.58622 3.12328 0.18095 20 - -
10928 1.38629 1.38629 1.38629 1.38629
10929 0.03718 4.00361 4.00361 1.46634 0.26236 1.09861 0.40547
10930 21 0.14375 3.36635 2.79288 3.26670 21 - -
10931 1.38629 1.38629 1.38629 1.38629
10932 0.06604 4.00361 3.08663 1.46634 0.26236 1.09861 0.40547
10933 22 2.90239 3.52248 0.12456 3.42049 22 - -
10934 1.38629 1.38629 1.38629 1.38629
10935 0.03825 3.97582 3.97582 1.46634 0.26236 0.58748 0.81131
10936 23 2.93780 3.57362 0.11872 3.47683 23 - -
10937 1.38629 1.38629 1.38629 1.38629
10938 0.03718 4.00361 4.00361 1.46634 0.26236 1.09861 0.40547
10939 24 3.07459 2.58622 3.12328 0.18095 24 - -
10940 1.38629 1.38629 1.38629 1.38629
10941 0.03718 4.00361 4.00361 1.46634 0.26236 1.09861 0.40547
10942 25 2.93780 3.57362 0.11872 3.47683 25 - -
10943 1.38629 1.38629 1.38629 1.38629
10944 0.03718 4.00361 4.00361 1.46634 0.26236 1.09861 0.40547
10945 26 0.14375 3.36635 2.79288 3.26670 26 - -
10946 1.38629 1.38629 1.38629 1.38629
10947 0.03718 4.00361 4.00361 1.46634 0.26236 1.09861 0.40547
10948 27 0.14375 3.36635 2.79288 3.26670 27 - -
10949 1.38629 1.38629 1.38629 1.38629
10950 0.05071 4.00361 3.46743 1.46634 0.26236 1.09861 0.40547
10951 28 3.39016 0.13545 3.44142 2.79762 28 - -
10952 1.38629 1.38629 1.38629 1.38629
10953 0.03768 3.99057 3.99057 1.46634 0.26236 0.77471 0.61774
10954 29 3.41707 0.13214 3.46721 2.81731 29 - -
10955 1.38629 1.38629 1.38629 1.38629
10956 0.03718 4.00361 4.00361 1.46634 0.26236 1.09861 0.40547
10957 30 3.07459 2.58622 3.12328 0.18095 30 - -
10958 1.38629 1.38629 1.38629 1.38629
10959 0.03718 4.00361 4.00361 1.46634 0.26236 1.09861 0.40547
10960 31 2.93780 3.57362 0.11872 3.47683 31 - -
10961 1.38629 1.38629 1.38629 1.38629
10962 0.03718 4.00361 4.00361 1.46634 0.26236 1.09861 0.40547
10963 32 3.41707 0.13214 3.46721 2.81731 32 - -
10964 1.38629 1.38629 1.38629 1.38629
10965 0.03718 4.00361 4.00361 1.46634 0.26236 1.09861 0.40547
10966 33 2.93780 3.57362 0.11872 3.47683 33 - -
10967 1.38629 1.38629 1.38629 1.38629
10968 0.03718 4.00361 4.00361 1.46634 0.26236 1.09861 0.40547
10969 34 2.93780 3.57362 0.11872 3.47683 34 - -
10970 1.38629 1.38629 1.38629 1.38629
10971 0.03718 4.00361 4.00361 1.46634 0.26236 1.09861 0.40547
10972 35 0.14375 3.36635 2.79288 3.26670 35 - -
10973 1.38629 1.38629 1.38629 1.38629
10974 0.03718 4.00361 4.00361 1.46634 0.26236 1.09861 0.40547
10975 36 0.14375 3.36635 2.79288 3.26670 36 - -
10976 1.38629 1.38629 1.38629 1.38629
10977 0.03718 4.00361 4.00361 1.46634 0.26236 1.09861 0.40547
10978 37 2.93780 3.57362 0.11872 3.47683 37 - -
10979 1.38629 1.38629 1.38629 1.38629
10980 0.03718 4.00361 4.00361 1.46634 0.26236 1.09861 0.40547
10981 38 2.93780 3.57362 0.11872 3.47683 38 - -
10982 1.38629 1.38629 1.38629 1.38629
10983 0.03718 4.00361 4.00361 1.46634 0.26236 1.09861 0.40547
10984 39 0.14375 3.36635 2.79288 3.26670 39 - -
10985 1.38629 1.38629 1.38629 1.38629
10986 0.03718 4.00361 4.00361 1.46634 0.26236 1.09861 0.40547
10987 40 3.07459 2.58622 3.12328 0.18095 40 - -
10988 1.38629 1.38629 1.38629 1.38629
10989 0.03718 4.00361 4.00361 1.46634 0.26236 1.09861 0.40547
10990 41 3.41707 0.13214 3.46721 2.81731 41 - -
10991 1.38629 1.38629 1.38629 1.38629
10992 0.03718 4.00361 4.00361 1.46634 0.26236 1.09861 0.40547
10993 42 0.14375 3.36635 2.79288 3.26670 42 - -
10994 1.38629 1.38629 1.38629 1.38629
10995 0.03718 4.00361 4.00361 1.46634 0.26236 1.09861 0.40547
10996 43 3.07459 2.58622 3.12328 0.18095 43 - -
10997 1.38629 1.38629 1.38629 1.38629
10998 0.03718 4.00361 4.00361 1.46634 0.26236 1.09861 0.40547
10999 44 3.07459 2.58622 3.12328 0.18095 44 - -
11000 1.38629 1.38629 1.38629 1.38629
11001 0.03718 4.00361 4.00361 1.46634 0.26236 1.09861 0.40547
11002 45 0.14375 3.36635 2.79288 3.26670 45 - -
11003 1.38629 1.38629 1.38629 1.38629
11004 0.01876 3.98519 * 1.46634 0.26236 0.00000 *
11005 //