annotate kurator-wrapper.xml @ 5:3d3b73d218d0 draft

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date Thu, 21 Apr 2016 17:18:27 -0400
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1 <tool id="kurator_1" name="Kurator-wrapper" version="0.1.0">
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2 <description>The wrapper to run Kurator in Galaxy</description>
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3 <command>java -jar \$JAR_PATH/kurator-akka.jar -f $kuratorWorkflow -p input=$inputDataFile -p output=$outputDataFile</command>
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4 <inputs>
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5 <param name="kuratorWorkflow" type="data" label="Kurator workflow"/>
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6 <param name="inputDataFile" type="data" label="Input file to be curated"/>
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7 </inputs>
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8 <outputs>
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9 <data name="outputDataFile"/>
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10 </outputs>
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12 <tests>
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13 <test>
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14 <param name="inputDataFile" value="five_records.csv"/>
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15 <param name="kuratorWorkflow" value="example.yaml"/>
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16 <output name="outputDataFile" file="five_records_output.txt"/>
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17 </test>
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18 </tests>
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20 <requirements>
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21 <requirement type="package" version="0.0.1">Kurator_Package</requirement>
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22 </requirements>
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23 </tool>