1
|
1 <tool id="kurator_1" name="Kurator-wrapper" version="0.1.0">
|
|
2 <description>The wrapper to run Kurator in Galaxy</description>
|
|
3 <command>java -jar \$JAR_PATH/kurator-akka.jar -f $kuratorWorkflow -p input=$inputDataFile -p output=$outputDataFile</command>
|
|
4 <inputs>
|
|
5 <param name="kuratorWorkflow" type="data" label="Kurator workflow"/>
|
|
6 <param name="inputDataFile" type="data" label="Input file to be curated"/>
|
|
7 </inputs>
|
|
8 <outputs>
|
|
9 <data name="outputDataFile"/>
|
|
10 </outputs>
|
|
11
|
|
12 <tests>
|
|
13 <test>
|
|
14 <param name="inputDataFile" value="five_records.csv"/>
|
|
15 <param name="kuratorWorkflow" value="example.yaml"/>
|
|
16 <output name="outputDataFile" file="five_records_output.txt"/>
|
|
17 </test>
|
|
18 </tests>
|
|
19
|
|
20 <requirements>
|
|
21 <requirement type="package" version="0.0.1">Kurator_Package</requirement>
|
|
22 </requirements>
|
|
23 </tool>
|