Mercurial > repos > aafc-mbb > kurator

view kurator-wrapper.xml @ 2:45d1fe01e29d draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
Uploaded
author aafc-mbb
date Thu, 21 Apr 2016 17:14:24 -0400
parents b04af3140b73
children
line wrap: on
line source

<tool id="kurator_1" name="Kurator-wrapper" version="0.1.0">
  <description>The wrapper to run Kurator in Galaxy</description>
  <command>java -jar \$JAR_PATH/kurator-akka.jar -f $kuratorWorkflow -p input=$inputDataFile -p output=$outputDataFile</command>
  <inputs>
    <param name="kuratorWorkflow" type="data" label="Kurator workflow"/>
    <param name="inputDataFile" type="data" label="Input file to be curated"/>
  </inputs>
  <outputs>
    <data name="outputDataFile"/>
  </outputs>
  
  <tests>
    <test>
      <param name="inputDataFile" value="five_records.csv"/>
      <param name="kuratorWorkflow" value="example.yaml"/>
      <output name="outputDataFile" file="five_records_output.txt"/>
    </test>
  </tests>
  
  <requirements>
    <requirement type="package" version="0.0.1">Kurator_Package</requirement>
  </requirements>
</tool>