Mercurial > repos > aafc-mbb > kurator

changeset 1:b04af3140b73 draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
Uploaded
author aafc-mbb
date Thu, 21 Apr 2016 17:14:11 -0400
parents 9aafb378478e
children 45d1fe01e29d
files kurator-wrapper.xml
diffstat 1 files changed, 23 insertions(+), 0 deletions(-) [+]
line wrap: on
line diff
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/kurator-wrapper.xml	Thu Apr 21 17:14:11 2016 -0400
@@ -0,0 +1,23 @@
+<tool id="kurator_1" name="Kurator-wrapper" version="0.1.0">
+  <description>The wrapper to run Kurator in Galaxy</description>
+  <command>java -jar \$JAR_PATH/kurator-akka.jar -f $kuratorWorkflow -p input=$inputDataFile -p output=$outputDataFile</command>
+  <inputs>
+    <param name="kuratorWorkflow" type="data" label="Kurator workflow"/>
+    <param name="inputDataFile" type="data" label="Input file to be curated"/>
+  </inputs>
+  <outputs>
+    <data name="outputDataFile"/>
+  </outputs>
+  
+  <tests>
+    <test>
+      <param name="inputDataFile" value="five_records.csv"/>
+      <param name="kuratorWorkflow" value="example.yaml"/>
+      <output name="outputDataFile" file="five_records_output.txt"/>
+    </test>
+  </tests>
+  
+  <requirements>
+    <requirement type="package" version="0.0.1">Kurator_Package</requirement>
+  </requirements>
+</tool>