diff README.rst @ 1:4554fcd4ef6d draft

v0.0.6

--- a/README.rst	Wed Mar 14 12:46:57 2018 -0400
+++ b/README.rst	Wed Sep 05 10:44:57 2018 -0400
@@ -45,6 +45,27 @@
 in the ``tool-data/`` folder. Sample files are included which explain the
 tab-based format to use.
 
+For example, using https://doi.org/10.5281/zenodo.1406071 which is the
+database provided with Kodoja::
+
+    $ cd /mnt/shared/data/
+    $ mkdir kodojaDB_v1.0
+    $ cd kodojaDB_v1.0
+    $ wget https://zenodo.org/record/1406071/files/kodojaDB_v1.0.tar.gz
+    $ tar -zxvf kodojaDB_v1.0.tar.gz
+
+Then update your Galaxy configuration in ``tool-data/kraken_databases.loc``
+to add a line like this::
+
+    kodojaDB_v1.0_kraken(tab)KodojaDB v1.0 (kraken), Sept 2018(tab)/mnt/shared/data/kodojaDB_v1.0/krakenDB
+
+And likewise update ``tool-data/kaiju_databases.loc`` with a line like::
+
+    kodojaDB_v1.0_kaiju(tab)KodojaDB v1.0 (kaiju), Sept 2018(tab)/mnt/shared/data/kodojaDB_v1.0/kaijuDB
+
+At the time of writing, reloading the ``*.loc`` files required restarting
+the Galaxy server.
+
 
 History
 =======
@@ -53,6 +74,9 @@
 Version Changes
 ------- ----------------------------------------------------------------------
 v0.0.0  - Initial release covering ``kodoja_search.py`` v0.0.3.
+v0.0.4  - Minor update to call ``kodoja_search.py`` v0.0.4.
+v0.0.6  - Minor update to call ``kodoja_search.py`` v0.0.6.
+        - Document installing the Kodoja databases from Zenodo.
 ======= ======================================================================