diff kodoja_search.xml @ 1:4554fcd4ef6d draft

v0.0.6

--- a/kodoja_search.xml	Wed Mar 14 12:46:57 2018 -0400
+++ b/kodoja_search.xml	Wed Sep 05 10:44:57 2018 -0400
@@ -1,7 +1,7 @@
-<tool id="kodoja_search" name="Kodoja database search" version="0.0.0">
+<tool id="kodoja_search" name="Kodoja database search" version="0.0.6">
     <description>identify viruses from plant RNA sequencing data</description>
     <requirements>
-        <requirement type="package" version="0.0.3">kodoja</requirement>
+        <requirement type="package" version="0.0.6">kodoja</requirement>
     </requirements>
     <version_command>kodoja_search.py --version</version_command>
     <command detect_errors="exit_code"><![CDATA[
@@ -53,7 +53,7 @@
             </options>
         </param>
         <conditional name="single_paired">
-            <param name="single_paired_selector" type="select" label="Single or paired reads" help="--paired">
+            <param name="single_paired_selector" type="select" label="Single or paired reads">
                 <!-- TODO?
                 <option value="collection">Collection</option>
                 -->
@@ -102,8 +102,8 @@
 FASTQ/FASTA sequencing run by matching them against both
 Kraken and Kaiju databases.
 
-The main output is a five column tab-separated table as follows
-(tabular format in Galaxy):
+The main output is a tab-separated table as follows (tabular format in Galaxy)
+with the following columns:
 
 1. Species name
 2. Species NCBI taxonomy identifier (TaxID)