Mercurial > repos > abims-sbr > cds_search

diff scripts/dico.py @ 1:c79bdda8abfb draft default tip

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planemo upload for repository https://github.com/abims-sbr/adaptsearch commit 3a118aa934e6406cc8b0b24d006af6365c277519
author abims-sbr
date Thu, 09 Jun 2022 12:40:00 +0000
parents eb95bf7f90ae
children
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line diff
--- a/scripts/dico.py	Fri Feb 01 10:26:37 2019 -0500
+++ b/scripts/dico.py	Thu Jun 09 12:40:00 2022 +0000
@@ -3,10 +3,10 @@
 def dico(F1):
     dicoco = {}
     with open(F1, "r") as file:
-        for name, query in itertools.izip_longest(*[file]*2):
+        for name, query in itertools.zip_longest(*[file]*2):
             if name[0] == ">":
                 fasta_name_query = name[:-1]
-                Sn = string.split(fasta_name_query, "||")
+                Sn = str.split(fasta_name_query, "||")
                 fasta_name_query = Sn[0]                
                 fasta_seq_query = query[:-1]
                 dicoco[fasta_name_query] = fasta_seq_query