Mercurial > repos > abims-sbr > mutcount

diff test-data/phylogeny_concat.fasta @ 0:acc3674e515b draft default tip

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
planemo upload for repository htpps://github.com/abims-sbr/adaptearch commit 3c7982d775b6f3b472f6514d791edcb43cd258a1-dirty
author abims-sbr
date Fri, 01 Feb 2019 10:28:50 -0500
parents
children
line wrap: on
line diff
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/phylogeny_concat.fasta	Fri Feb 01 10:28:50 2019 -0500
@@ -0,0 +1,20 @@
+>Ac
+gtacatgggcaagtttttcttcgaatgataaggtgcatatggatcattggcataatacttgggtatcttaaagtatctgttgaccattctgtccagcatccagcactggcgctgtgtgcagaagacatggtgctgcaggtgtgccactctggcacccttcttcttccacagcttctcgtgtcggccgtgcatttcagagcttcctcagcgtactccagaagagtaacaaagctctctttggagccctcgggcagaattccattggggatctccacaatgagcttccgaccaagaagcagcgtttcccagctgacctccaagcaatctgtcagagtgatacggaagcacaaactcgaggcagtctgtgccttcgccaatgtgtttacattttccggcaggccattggcgctgacagggggctcttttaacacccccacaccgttgccctctgtcttttcagacacgttgacggcgtggggctcatcaggagcaccaccgaggcccaggacccaatcgtatacaataccgcgagggcaaaccaaagccataaccgtgcattgttcctgctgctcggttttcaatgacaactccaaacaaaccacgattcacacgcgagtcttccttttctttgccacttgttgtgaacccatattcaaatacttggtttatttgattatgaggaatgccaccaccacggtcagatattcttataatgaaatcaattttgttgttggcaatagtaacagacacaggtggcatattctccagggaattcagatgattttctactgtagctctcattgcattcttcagcatctcatgtataatgtactcaagtggtggtgcaatgtatggaaaggttgcatttacatgaccattgatacgaacatctggccagatcttgttgtatacatgtccttgtcttcaggatttgacatgccatggtcttctttgggtttcactgtctctgtgcttcctggtttgtctacaagtttgactacatccttatcagatgatggagctttgttctctgactgctttgaagaacttggatcagtcttggaaatattttcacctggaagtcttgctggtctccagaactccttggcttgttccttcgtcagaatccaggcttgtttagatatatccagagcctggtctgggatgggtgacgataataagaacaatgaacatattaacctcaaggttacaggacaggatggcagtgttgtacactttaaaatcaagaagaacactcccctgaggaagctgatgaatgcatactgtgacagaacaggtgtcaagagtggagcaatgcgattccgatttgatgggcaaccaatcaatgaaacagacactccaacacagctggacatggaagatggtgatgtgattgatgtattccaacagcagactggaggcgtcgagttgacccacgtaatgcttcacgtctggacacaagggatcccagacaggctgaaccacgacgtgctgcatcgcaaccagcagcacctaccccagcacaaagattacaggctccaccatcatctggaggaagcaatgggccaatttcatctcaggatcaggaaaagactgctctcatcatgcaggtgttacaacgtgctggtgctggtgccgaactatcaggtgatgaatgtggtgatcacgtcgttcgtgttcgtctgcgccgcccacgagatccactcgctgaccgtcaagctgacggactacgccgtgccaaacgactggagaatactgctgaggaacatggtctgctttactgccgttctgatacctgtggccataacacacggtgcatttggcgtatgtctgggaattgagtattctgtggcaatgacctacagaatggtgtcatgtcaaaagcatccacttctgcatcctttaaatgaggatctttatttattgcaggatttggtggataagggtgtgagatgccacttggtaccgaggtgtccttgctcgtggcaccaactgctgtatatgaaggtggtacagtcaaaagaaatgcaacgaataaaccggagctaccagaaaaaccaaaagtttcaagaatggagcaagtttatgaaaacataccgatgtccgaacaaaaacaaggtctgcagagagacgaaagtaatggaaaacgtcaccttccattccagcttcgtggagttgatggcacaacttacgctgacctcgagatcattctggtggcttgggctggcactgatagcagatggtgctcttggtggcggtgctatgcgtgtgcctcctgggggaggtggcagtattcccgtgccatgtccacggctacgctgcttgctggcattgcttgggctaccatgctccctgtttttctttgtagctatatttatcctaatggtttggccctctttgaagccaagatccagcttaggtccagagctaagtaggtctttgttgtccttctgttcttcaagtcttcagtacaacctggtgatcatgttatcccattgtacatccctcagtgtggtgaatgcaaattctgcaaaagtccgaagaccaacctctgctcgaaaatcagagctactcaaggtgcaggtaagatgcctgatggcacaagcaggttctcttgtaatggcaaggagctgtatcacttcatgggctgcagcacattcagtgaatataccgtggttgctgaaatatctgtgtgtaaggttaatccagaagctccactgggcaaggtttgcttacttggctgtggaatatcaactggttatggagctgccttccggaactgtagctgttttcggcttcctgtcgtcgtctggtgcggaagaacgcgcgcctgtccacctggctgtgtgtgcatgttgctgtttatgcatgttcatgtcagtgcttgtgatcggtgagttagaacgagcgagtgagcgggtgcgtgagacatccgacaacatcctgtctggtcgttcactgtgtactgcttttgaatcatttcctaaaggtgaaggtcgtctcgtggctgcttgccctcgttgtgtggagtgcgtgattgaccctgtaatgttgggagccaaacataatgtactgtggcgccacctggtggagaagaatgttgagcgccaagatgatgtacatgaggtgaaaggaagccatcagcaaggcttgaggcctcatcttatgtggccggatcttgaacaactgaatccaaagaaaccgaatgccaattgcttccattccaccaatggcacagctgagcaggaacaagattccactgtgatgtgtaccttctgtccctgtatgtcaatggattttaccaggtcgccatctgtcagtgtctgtttacgttctctggaatatttgggcatgagagtatctttgagagttctatgttcagttccttgttgtctgtcatcaatggcagcaattgtccatggcaatcctaagccaaggaagacattgacagagttggacccagttacatttccaattgagttgtcagcatatttctcctgtgtggcagcctgcttgctggcaaacagatctggcaaacttgttcccagagctacaaatgtgatggcagtgacgctgtccttcaggccaaccaaacaaccgaagatagatgccaagtccccaacaacggcagtaagtagaccaatcatgataagggcaatgaagaaggctaaccagccaccccagatggaaggaggaggcacaagtgcaaaaatgatcttccagccaaaggttaagaagtgcatgatgtctgtcttcactcgactgagatccgtccccaacgctgacgtcacaaatgtccggcccccgcgctgcgggaagaccttcaccattcacttcatgcgaatcctcgaccgccgctcgttcccctccataggcctccactgcctgctgaatgaccgactggacgaaatctctgacctgcacgtggaagcccatttccaactcagacgacatatacatggacagatatctcgctacttcctggatgacgtcatcaacgttagtcttgacttccctgatccacaaggttctatgagataccttgaagccaatacaacagccctgactccacctaacagagggccgttttggtactccacagatgttgatacgaggacacaggcaccctttggtaggtcagtcctccagtgtcgcagttcacaaatatctctagttggatgtggggccatgttgttgagcacatacttcatggtggatcttgttatatatgagcgtcttgtcataatcggcagtgtagttctttactgtgccataaactgcatctatactgaggatgttgaccacttctatacgatcaaagtaaataatgacacctccactggtaccacatggtacattcttgacctcatctgtttgacaatgtcactgccagaccagccacataacacagggctctccagggctgcagggacagctgatagcacaacgtgtgcagtatccgcgaaaaggcgaagatccggaaatgccaaagggccacctcagtcgacggcgacgtcagtacgtaaaggaaaccaatcagcacgaaagggggaatgttctccatgtcatgtcatcagatcggcaatgttcttttccaggtcatcaattctgtgtcccatgtcatctattcttgtgataacttggtcggacatgttctggaatttatcctgcatctgctgtaaaaggttttgcacatattgtgttagatcctgtatgtctttaggatcggcactgttggtgataaaaaagaagcctaatatttttccacccaaatgttttcgtcttgcctcttcatggtccataatcccacctgatgttgtgagcacaatgtacccaaactgtcttgatggcagtaggttagttgtccatttctccatgtctctgatgcaaacatcaaaccttggacttatcacaccacacttgttcagtcttcctgtcaaattaacaacaatttttcctgctctgtggtcatcaatgatctcaaactcaccaatgaaaagtgtgcggtatatgttccttcctaattttgtcctaaactggatgtatgcctctggatcatccttttctggatcttttgttgtatctgtgagaactgcttccatttcagcctctttttcttcctccttgctcataatttctgctctaaccttatcaagcaaggcatactgtgacatctgctgtatgatgacaggagctggtggtggactgtgcagactggccatgccagccagactcgtcatgcttgctgaaccattcatcatttgctgctgttgctgctgtgttagctgctgtggtttaactttgcacacattgctatggtccagttcattcttgttactggtgtttagatctgatgaggacatcacagacgtggcactctgtgcagaggtaatattttctgtgaggttcttcatgagttcggtaagtttgctagtcagatcttcatctggctgctttgccgacgttgttggtatcgttggtcgttcatgtgatgtagtcggcagatgttctgatttcgtgttctgcgctgtcgttggacttggtaaggactgggtcggtggcgccgcggtgccgtcgcggccaagactgcagtcatcagagtccgatgttagtgtgaacgtggctgggcaggaaacacgcagaccaattgacctcagtgagccatccagcggagaactgacacctggacaaggatccgaggctcggggatctacaacacgaggggctgaagctaagggatccacacccagagattctgaggtcataacatggatggggtcgacattgccaagcttcttggtgtgtgttttcagtggcagtggtggtggtggtgttgatttcactggtgactgtgcaggactcgagtctcctattgatgtgtcctcctcaataatgccctcatccgtgtgttcagcatctgcaggaagtggattggcagttatgcgtatgctgcactcggatcctttaaaccacagtgattcccattccagggaggcagatgccgtttccatggattcagacacatttagtgttgatggtagcagacgtttgaagtcaatcgtttgcttgcctcatgacagacaacagaacatctctgatgatgaattgaactccaaacatacgaagaaatcacataaattgaagaaagtgaaaagacatcaaaagagaaaaaagaaatcttccattttgggcgaatcaggatcttgcacaagtggtgattcagtggactctggagaggcggtcgcttccggcatctcttcagtgttgtcaggatctgtgatgtcttgtacaagaggttcattagatatatcctctattattgtatccgagggatccgtaacatgggcgaagtgccatctaatgccatcgttactgcctcttttaaatcggaacaagaaagagaaatctactggacgctcatcaactatgctcagcagttctttgcctctgataacaatgaagattttgccatgttttcttcaccaatgcttgaatacaaagactcagcctctttgtcatcagctggtttgtcttccacagtttcagtttccattggttcctcctcatcctctttggatgcctcctcagcagcagcctctgtacgtatcttttcctctgcctccttggcagcccttcttccacttcttcttctgggactttcatcttcctcctgttccttggcactggaccttccctttctggttgctttgcgaggcgatggtgttttcaactttttcacttcctcttcctctggctggtactcctcttcctcttcctcctcttcaccctgtgattttcgtccttgacctctcctgccacgtgaactccggccagcacctcgaccagtgcctctgccacgtggctttgactgtgagcacccatcttatcatttgcatgacatacggcacaactcttttcgtaatcctcctgacctggagctaccgtatccttcttcttagggaggtctcgaacttcgctaaatggtggattgacatcggttcgtgggtctttcaccacaaccaacttagccccatcatcttcacaatctttcatacatcgcttcccaattgctccaatattcttgccatccagtgtatgtgtgtgaaagcatgtgtagaactggtactgccagccaaatcacagcatcgtttagaagatgcccacgccgtctacgtggtgggagtccacacacacacacacgtactaaggactaagttcatagagatgctatactcaacaagaaaaagtcactatcatacagtgattacccatcacttagtgcagacaaacacatcaccattacattttccatcaacaacagtccatggatttacagattttgtcttagttgcgactttcctactgtttttagtaattctgcccgactgcatgctgcccactggttttaggtttaccttggctgttgatttgtacgattgcttacgtggcgctggaagtgttttggcgtcactggctggcaggttgttttcatctcttgttgtaagcggagcacgcaatttcttgctggagttatgcctcggtaccggcacgtcagccagcctatcagggacggatgttttgctgacgtcaccaaggcttgccgatgagcggcgttttgattcgctgctgcgtcgattccttccggaactgccgacagacgaatcggccaatgacgtcaacgaactgggacggctgctcgtacttccggcgcgcgactgcggcctctggttgctgaataatgaactacttccattcatgtgggcatcaagcttaggccctttctgtgacagtctctccagcgtgtcgtcgctgacagtctcgtttgcctctttttctaactccaaccgaaatatatatctcgtgctgcccttcttaatatcagtaacgtttacgctgtattggccttccagtgagctgtccttgagtacatcctctgttagtttagtaaatgttgccgcttcctttatgtacttacacactctagctatatcttcacatgatgcaccatattccattgctaaggcagcctcattaataagttctccagcaaccgaagcaacaatatgtacaccaagaactctgtccgactctttatctccaataacttttaccaagccatctgtatcattgttagtttttgcccgactgtttgctgccaaaggaaactttcca---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
+>Pu
+cctgcggcaacatcgcctgttcacgtcgaacccgaagctggactgctgcccgacgataaccgagctgacccagcgggcggcgggcatcaacccgcagggcctgctcctcgagctcttccacacgcccaacttcacacagacgttctacgagacggcctgccacccggcgatcaagggccggccgtgccagttcatcgaccgccagtacgcggcgtacagcaagtgcatacagcagtactcgtacgtgtacgcgctcgggcggacgtacgg------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
+>Am
+aagaagtccgtgacccaggaggtcgtgacccgagaatacaccatcaacatccacaagcgtatacatggcattggcttcaagaggagggcgcctcgcgcggtgaaagccatccgagagtttgccttcaagcagatgggcacagaggatgtccgaatcgagacccgactcaacaagcacgtctggtccaag------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
+>Ap
+tctgatccatccataatggctgcatccatctggacttctcctttggcatttagggctgatccagtacctgcatcaaacacagagttgttctccatatccatgacagccaattccacaacatctagagcagatccaccatttaataagagctttaaccctttaagtgcagcctttttaaccccttgtctgttttgcatggccatgctgtctgggatggcccaagctccacca---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
+>Pf
+tgtagcattaccatgtattggcattccactctccgtcatgttgacaaccaccgttccggcgagtccaaaatcatcttcaaagatataatctggtattgttatgttaatgtcatagagagtcggaaagtgattttcagttttatactgatgcgtgtatattttgccgtatccatgcacctctattgtccaccatccgtgtttacaaggatgatgttgttgtatcgttccctcgagataaccatttctaacttgttgttcgcgccatctcttcacgtactggccggcgccatctcgaaggtatatgtccacagcgccatgtgg------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
+>Pg
+gaagccatggcacgccgggagaagggcaagaagaagtctgttaccaatgaggtggtaactagagaatacacagtgaatatccacaaaagaattcatggaataggtttcaagaagagggcacctcgtgcgatcaaggctatcaggcagtttgcctttaaacagatgggcactgaggatgtgcgtatagagacgagactcaacaaacacatttggtcaaagggaattagaaatgtcccattccgtgtgcgtgtaagattggctcgtaaaaggaatgaagatgaagactcgccacacaaactttacaccttggtctcctatgtacctgttacaacattcaaaggtacacagacagtaaatgtggagagtagtgac---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
+>Ph
+cgccgtgagaagggaaagaagaagtccgttaccaatgaagtggtaacaagggaatacaccataaacatccataaacgaattcacggaattgggttcaagaagagggcgccacgtgccatcaaagccatcagacagtttgcc------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
+>Ps
+acatggagtagcattggtcgaccacgagtcaatggcaagcttgagatgacaaggagtatcggtgatgttgcggtgtcggcatgcggtggctccctcatggtggcaacaaggagaactacagctctgctcgaaactgatgatatattcaaacacaaagatgtgatatgtttaggtgtaatattttgtatgatattcttggtgaccttgcttcttgtggcagcgaccttcacctcacgaccattgagcgcagactttctgtcatcttcaaggaagacaaaatgtgtcatggcatggatactcgcgtatcccattgtaatcatctttttcgtttatatacgttactaccaagacgaggattgcatagatctgacaccttatattatacctcaggttgacaagacttattgtggtgctaatcttgatgacttctataaaaagtccatgttgacatttgaagcttatgtcattgccctggttggtgctgtactagtagtcttaagtatgttccatctgatgcacactgcagccaattacattcagatccacgaatctgggccgacgaattacgatatttataagaacgaagtggccaataaacatccatcgggatca------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
+>Pp
+acacagaaggaagcacagagggcctaccaagaagaactaaagagacagattgaggagcagaagctgataaaacaaagggaaaaggaagagagagaaagatacgataagaagctagatgacgaaattaggaactatgacccctttggacgaggtggtggaggagcaccaatggatggtgaatcgtttgctagaggtggtcatggtatctttggtgaaccattgtctgatgct---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
+>Pa
+gagctgtcctttgtgctgtcatctttaacatttatagccacatttctgtttgcatcacttgccatgaagaattaccatggcaacaagtatccaccaatttggtttcctagtgatggtggcttcacctatcatgtgataagtacagcgtctgagtggataatgggatgtagaaaatggtacgactatgcctgtaagccaatggattattacacagaaacaaaaatcttgcaagaaaagattgtcctagaagccaatagtgatgacttttttacagtagctatccgtccacatggaatctttggcccacgtgacccgcacatggtgcccactactgtacgcactgccaaggcaggaaaaatgaagttcaaaataggcgatgggaaaaatattgtggatttcacttttgtggaaaatgttgttcatggtcacatt------------------------------------------------------------------