Mercurial > repos > abims-sbr > oligator

diff test-data/oligator_results.csv @ 0:a811f7256f6e draft default tip

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planemo upload for repository https://github.com/abims-sbr/tools-abims/tree/master/tools/oligator commit b7e63a01570e9fc381abb01d5b176fcea024e251
author abims-sbr
date Fri, 27 Apr 2018 08:42:52 -0400
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/oligator_results.csv	Fri Apr 27 08:42:52 2018 -0400
@@ -0,0 +1,480 @@
+zga_344_GH3
+CAAGATAAAGCACGACCTTCCGAC
+Tm = 72
+The oligo length is 24 nucleotide(s)
+
+zga_344_Fn3
+GAAACGGTGGTCCAACTGTATGTG
+Tm = 72
+The oligo length is 24 nucleotide(s)
+
+zga_347_GH3
+CAAAGCAAGCAAAAGATATATCACAAA
+Tm = 70
+The oligo length is 27 nucleotide(s)
+
+zga_347_Fn3
+GAAATCGTTCAGCTTTATTTTTCGGA
+Tm = 70
+The oligo length is 26 nucleotide(s)
+
+zga_3720_GH3
+AGTAGTACCCTACCCTATATCGAAG
+Tm = 72
+The oligo length is 25 nucleotide(s)
+
+zga_3720_UNK
+AGCCTAAACCTAAAAATAGCCGAAAA
+Tm = 70
+The oligo length is 26 nucleotide(s)
+
+zga_3745_GH3
+CAACATCCTTTGGTGACCAAAGAC
+Tm = 70
+The oligo length is 24 nucleotide(s)
+
+zga_3745_linker
+GACCTGAATTCGAGAACCGATGAC
+Tm = 72
+The oligo length is 24 nucleotide(s)
+
+zga_3745_beta
+CAGTTGATTTTCGGGGCCATCCC
+Tm = 72
+The oligo length is 23 nucleotide(s)
+
+zga_3745_GH3linker
+CAACATCCTTTGGTGACCAAAGAC
+Tm = 70
+The oligo length is 24 nucleotide(s)
+
+zga_3818_GH3
+CAAGAAACGATAGAAGCGGTGGAG
+Tm = 72
+The oligo length is 24 nucleotide(s)
+
+zga_3818_Fn3
+GTGGTACAGTTATATCTACGGGATG
+Tm = 72
+The oligo length is 25 nucleotide(s)
+
+zga_42
+TGTAAGGAAGAGCGAAAAGAAATTATA
+Tm = 70
+The oligo length is 27 nucleotide(s)
+
+zga_369
+TGTTCGAGTGATGATGACCAATCG
+Tm = 70
+The oligo length is 24 nucleotide(s)
+
+zga_518_CBM48
+CCGCAAGTTACCGTTTTCAGTCTT
+Tm = 70
+The oligo length is 24 nucleotide(s)
+
+zga_518_GH13
+GATAAGGACGGAAATTTTCTCACTTA
+Tm = 70
+The oligo length is 26 nucleotide(s)
+
+zga_530
+TACGAAAACACCGAACGAAAATGGT
+Tm = 70
+The oligo length is 25 nucleotide(s)
+
+zga_1248
+GGCGGAAGTAAAAAAAAGGTCGTTT
+Tm = 70
+The oligo length is 25 nucleotide(s)
+
+zga_1626
+GATTGCGCCATTTTTTATCATATTTATC
+Tm = 72
+The oligo length is 28 nucleotide(s)
+
+zga_314
+TGCTCCAATTCCGAAATCAAGGTAG
+Tm = 72
+The oligo length is 25 nucleotide(s)
+
+zga_316
+TGTGGAGCAGTGAAAAAAACGGATA
+Tm = 70
+The oligo length is 25 nucleotide(s)
+
+zga_355
+TGTTCGGGAGATAAGAACATGGAG
+Tm = 70
+The oligo length is 24 nucleotide(s)
+
+zga_368
+CAACAATTGAAATCGCCCAACGGT
+Tm = 70
+The oligo length is 24 nucleotide(s)
+
+zga_2429
+TGTAAAGTGCCTTCCCATACTTATAT
+Tm = 70
+The oligo length is 26 nucleotide(s)
+
+zga_3602
+TGCAAAAATGCGACCGAGGAAAAAA
+Tm = 70
+The oligo length is 25 nucleotide(s)
+
+zga_4653
+AAAATATCAGCAATAAAAACATACCCTA
+Tm = 70
+The oligo length is 28 nucleotide(s)
+
+zga_4655
+TGTGGCCGCGAGCCGTCAAATG
+Tm = 72
+The oligo length is 22 nucleotide(s)
+
+zga_4657
+AAAACGACACAGACAGATTTCGGTG
+Tm = 72
+The oligo length is 25 nucleotide(s)
+
+zga_4658
+GGTACAAGTATAAAATCGGTTGACTG
+Tm = 72
+The oligo length is 26 nucleotide(s)
+
+zga_4661
+AGCATATTGAATCAATTTAGCCTGAAA
+Tm = 70
+The oligo length is 27 nucleotide(s)
+
+zga_4662
+AAAGCAACTGTTTACAAAGGAAACAAA
+Tm = 70
+The oligo length is 27 nucleotide(s)
+
+zga_4668
+TGTAGTGATGATTTTCTTAATGAGGAG
+Tm = 72
+The oligo length is 27 nucleotide(s)
+
+zga_3523
+AAATTTAAGCCAGTGGTAAAACATGTA
+Tm = 70
+The oligo length is 27 nucleotide(s)
+
+zga_3572
+GAATATGAGGCGCCCTTCCCCT
+Tm = 70
+The oligo length is 22 nucleotide(s)
+
+zga_3629
+CAAGAAAAACCGAACATCATCCTTTT
+Tm = 70
+The oligo length is 26 nucleotide(s)
+
+zga_517
+ATAACCAATACTGAGCTAGAATATAAAG
+Tm = 72
+The oligo length is 28 nucleotide(s)
+
+RB12343
+GAATTGTGGGATCATCGCGACGT
+Tm = 70
+The oligo length is 23 nucleotide(s)
+
+RB548
+AGTTTTGCGATGGTTGATTCGCTG
+Tm = 70
+The oligo length is 24 nucleotide(s)
+
+RB2638
+AATTCGCAGCTTTCATTATCGACCA
+Tm = 70
+The oligo length is 25 nucleotide(s)
+
+RB2986
+CATGGGCGGAACATGGCGACTG
+Tm = 72
+The oligo length is 22 nucleotide(s)
+
+RB4894
+GATTTGAATTCGCAACGTCGTGTTT
+Tm = 70
+The oligo length is 25 nucleotide(s)
+
+RB5196
+ACCATGAACGCAATGCTCACCAAC
+Tm = 72
+The oligo length is 24 nucleotide(s)
+
+RB5200_S6PP
+AATTCCACGATCGCATCCAACCC
+Tm = 70
+The oligo length is 23 nucleotide(s)
+
+RB5200_GH13
+ACGTCGCCCCTCAATGCGACC
+Tm = 70
+The oligo length is 21 nucleotide(s)
+
+RB9292
+GATCTTCAGTTCGCCTACTCCCC
+Tm = 72
+The oligo length is 23 nucleotide(s)
+
+RB2160
+TCGCCTCACGTTCACCTTTGCTT
+Tm = 70
+The oligo length is 23 nucleotide(s)
+
+zga_4659
+TCAGGAATTAAAGAATACCAACTATTTA
+Tm = 70
+The oligo length is 28 nucleotide(s)
+
+RB10507
+GCAGAAGAGACGACGATCGTGTC
+Tm = 72
+The oligo length is 23 nucleotide(s)
+
+zga_314_antisens
+TTTGGCGTCAGTCTTGTAGGTAATA
+Tm = 70
+The oligo length is 25 nucleotide(s)
+
+zga_42_antisens
+TTCTTTGTGTTCTAAAAGTGCGATGT
+Tm = 70
+The oligo length is 26 nucleotide(s)
+
+zga_316_antisens
+TTGCCCACTTCCTTCTAGCACAAG
+Tm = 72
+The oligo length is 24 nucleotide(s)
+
+RB2638_antisens
+GGATTCCAAACGCAGGATCGTCG
+Tm = 72
+The oligo length is 23 nucleotide(s)
+
+zga_4661_antisens
+TCTTCCCATCCAGCCACCGTCT
+Tm = 70
+The oligo length is 22 nucleotide(s)
+
+RB5196_antisens
+GACGCGGTGCAGCCACATGAAT
+Tm = 70
+The oligo length is 22 nucleotide(s)
+
+zga_4662_antisens
+TTGTTGACAATCCATAAGTACTTTCAT
+Tm = 70
+The oligo length is 27 nucleotide(s)
+
+zga_3720_GH3_antisens
+GGATGGCAAATGAAAGTCAATTCTTT
+Tm = 70
+The oligo length is 26 nucleotide(s)
+
+zga_518_GH13_antisens
+TTGAAAAATAACAATCCCCAATGGCG
+Tm = 72
+The oligo length is 26 nucleotide(s)
+
+zga_355_antisens
+TAATGCCCTAATATGGACCGCCAA
+Tm = 70
+The oligo length is 24 nucleotide(s)
+
+RB5200_GH13_antisens
+CGCGGTTGGCTCGTCATGTTCG
+Tm = 72
+The oligo length is 22 nucleotide(s)
+
+zga_4668_antisens
+CAGTGATGAATTTTGTGTCAAAACTC
+Tm = 70
+The oligo length is 26 nucleotide(s)
+
+zga_3745_beta_antisens
+ATTTACAATAGCGTCGTAAATTACTTTT
+Tm = 70
+The oligo length is 28 nucleotide(s)
+
+RB4894_antisens
+CCGTTCGACAAGCACGCAAATGG
+Tm = 72
+The oligo length is 23 nucleotide(s)
+
+zga_4659_antisens
+TGCCTTGTGTCTAATATAAAACGTCT
+Tm = 70
+The oligo length is 26 nucleotide(s)
+
+zga_3629_antisens
+TTTTTTTAAGATTAGCGGAGTTACGG
+Tm = 70
+The oligo length is 26 nucleotide(s)
+
+zga_3572_antisens
+CTCCAAACCTGATATTGCCTCGG
+Tm = 70
+The oligo length is 23 nucleotide(s)
+
+RB2160_antisens
+CGCGTTCACATGATCGTGGGATT
+Tm = 70
+The oligo length is 23 nucleotide(s)
+
+RB12343_antisens
+GGCGGTGGAAGATGACTTCAACC
+Tm = 72
+The oligo length is 23 nucleotide(s)
+
+zga_3818_Fn3_antisens
+TTTTAATCTAAAGGATGTTTTTAAATCTG
+Tm = 70
+The oligo length is 29 nucleotide(s)
+
+zga_3602_antisens
+TTTTTTGGTAAACTTTATGGTGGCAC
+Tm = 70
+The oligo length is 26 nucleotide(s)
+
+RB10507_antisens
+CTCGTTCAGCATCGGCGAAATCA
+Tm = 70
+The oligo length is 23 nucleotide(s)
+
+zga_3720_UNK_antisens
+TGACGATATGCTTACGGGCAAGG
+Tm = 70
+The oligo length is 23 nucleotide(s)
+
+zga_347_Fn3_antisens
+TATTTTCAAGTTTCCACTGACATGAAT
+Tm = 70
+The oligo length is 27 nucleotide(s)
+
+zga_530_antisens
+AAAGACCTTATAAATCGAAGCTTGATA
+Tm = 70
+The oligo length is 27 nucleotide(s)
+
+zga_369_antisens
+ATTTACTTTGGCAATAGACCAAATACT
+Tm = 70
+The oligo length is 27 nucleotide(s)
+
+zga_344_Fn3_antisens
+ATTTTTGACAGTTAAGGCTACTTTTTTG
+Tm = 72
+The oligo length is 28 nucleotide(s)
+
+RB9292_antisens
+CTTTGGCGGCGCGTTACAGACA
+Tm = 70
+The oligo length is 22 nucleotide(s)
+
+zga_344_GH3_antisens
+ATTGGTTATAGGAATATTTACCGTTGT
+Tm = 70
+The oligo length is 27 nucleotide(s)
+
+zga_4658_antisens
+TTTCGATTGAAAAGCTGCCAGTTTTT
+Tm = 70
+The oligo length is 26 nucleotide(s)
+
+zga_347_GH3_antisens
+ATTAGTAATATCCACGGAAACCACTA
+Tm = 70
+The oligo length is 26 nucleotide(s)
+
+zga_4655_antisens
+GTCCACTGCCTTGAGCTTCAACA
+Tm = 70
+The oligo length is 23 nucleotide(s)
+
+zga_4657_antisens
+CCAGTTGAATTTAAAAATCGTCGTAC
+Tm = 70
+The oligo length is 26 nucleotide(s)
+
+zga_4653_antisens
+CCAGTTGGTAAACGAGCCATCTTT
+Tm = 70
+The oligo length is 24 nucleotide(s)
+
+RB548_antisens
+CTTCCGCGTGTACACCAGAACC
+Tm = 70
+The oligo length is 22 nucleotide(s)
+
+zga_518_CBM48_antisens
+GCCTTTTCCGTAACGGCCCCAT
+Tm = 70
+The oligo length is 22 nucleotide(s)
+
+RB2986_antisens
+TGAAACTTGCCCGGATTGATCTTC
+Tm = 70
+The oligo length is 24 nucleotide(s)
+
+zga_2429_antisens
+CTTCTTACTTGGTCTGATCCACATA
+Tm = 70
+The oligo length is 25 nucleotide(s)
+
+zga_517_antisens
+TTTGAACGGGAGTCCGTGTAACTT
+Tm = 70
+The oligo length is 24 nucleotide(s)
+
+zga_3523_antisens
+CTTGCTTCCGATTTTTAGTAGCACA
+Tm = 70
+The oligo length is 25 nucleotide(s)
+
+RB5200_S6PP_antisens
+TTCGATCGAGTTTTCAAACAGACCA
+Tm = 70
+The oligo length is 25 nucleotide(s)
+
+zga_3745_GH3_antisens
+GTCCTCATAAAGGTTTTTGAGCTCC
+Tm = 72
+The oligo length is 25 nucleotide(s)
+
+zga_1248_antisens
+TTTTACAATGAAAATAAAGGATTCCAAC
+Tm = 70
+The oligo length is 28 nucleotide(s)
+
+zga_3745_linker_antisens
+CTGTGCCAACTCGCTGTTTTGATA
+Tm = 70
+The oligo length is 24 nucleotide(s)
+
+zga_368_antisens
+TTTTTCAATTATACTTATGGCATACCC
+Tm = 70
+The oligo length is 27 nucleotide(s)
+
+zga_3745_GH3linker_antisens
+CTGTGCCAACTCGCTGTTTTGATA
+Tm = 70
+The oligo length is 24 nucleotide(s)
+
+zga_1626_antisens
+ATGGCACAAGATGCGGCCCCAA
+Tm = 70
+The oligo length is 22 nucleotide(s)
+
+zga_3818_GH3_antisens
+GCTCACCTCTACAGAAACCGAAAT
+Tm = 70
+The oligo length is 24 nucleotide(s)
+