Mercurial > repos > abims-sbr > oligator
diff oligator.xml @ 0:a811f7256f6e draft default tip
planemo upload for repository https://github.com/abims-sbr/tools-abims/tree/master/tools/oligator commit b7e63a01570e9fc381abb01d5b176fcea024e251
| author | abims-sbr |
|---|---|
| date | Fri, 27 Apr 2018 08:42:52 -0400 |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/oligator.xml Fri Apr 27 08:42:52 2018 -0400 @@ -0,0 +1,40 @@ +<tool id="oligator" name="Oligator" version="1.2.0" > + + <description>Oligator: design PCR primers</description> + + <requirements> + <requirement type="package" version="2.7">python</requirement> + <requirement type="package" version="1.4.0">argparse</requirement> + </requirements> + + <command><![CDATA[ + python $__tool_directory__/oligator/oligator_cmdLine.py --input $input --tm $tm + ]]></command> + <inputs> + <param argument="--input" type="data" format="fasta" label="DNA sequence - fasta format" /> + <param argument="--tm" type="integer" value="70" label="Tm temperature" /> + </inputs> + <outputs> + <data name="oligator_results" format="tabular" from_work_dir="oligator_results.csv" label="Oligator_global" /> + <data name="oligator_sens" format="tabular" from_work_dir="oligator_sens.csv" label="Oligator_sens" /> + <data name="oligator_anti_sens" format="tabular" from_work_dir="oligator_anti-sens.csv" label="Oligator_anti-sens" /> + </outputs> + <tests> + <test> + <param name="input" value="allseqfasta.fas" ftype="fasta" /> + <param name="tm" value="70" /> + <output name="oligator_results" value="oligator_results.csv" /> + <output name="oligator_sens" value="oligator_sens.csv" /> + <output name="oligator_anti_sens" value="oligator_anti-sens.csv" /> + </test> + </tests> + <help><![CDATA[ +.. class:: infomark + +**Authors** +Oligator was written by Frederic Lechauve frederic_lechauve@yahoo.fr +and integrated in Galaxy by ABiMS - Station Biologique de Roscoff - Sorbonne Université / CNRS + + ]]></help> + <citations/> +</tool>