Mercurial > repos > abims-sbr > orthogroups_tool
diff test-data/2_orthogroups_tool.output @ 0:d33ad52f59bc draft default tip
planemo upload for repository htpps://github.com/abims-sbr/adaptearch commit 3c7982d775b6f3b472f6514d791edcb43cd258a1-dirty
| author | abims-sbr |
|---|---|
| date | Fri, 01 Feb 2019 10:25:10 -0500 |
| parents | |
| children |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/2_orthogroups_tool.output Fri Feb 01 10:25:10 2019 -0500 @@ -0,0 +1,26 @@ + +-This script works on the 'Orthogroups' file output of Orthofinder to split each orthogroup in a single fasta file. +-It also gets rid of orthogroups with less sequences than the number specified by the user. + Building hashTable IDs/sequences ... + + Reading Orthogroups.txt and writing orthogroups to separated files... + (Dropping orthogroups of less than 2 loci.) + + Summary before paralogous filtering : + + 2 sps 3 sps 4 sps +2 seqs 1 0 0 +3 seqs 1 3 0 +5 seqs 0 0 1 +8 seqs 0 1 0 + + Summary after paralogous filtering : + + 2 sps 3 sps 4 sps +2 seqs 2 0 0 +3 seqs 0 4 0 +4 seqs 0 0 1 + +7 filtered orthogroups have been written in separated files + +Filtered orthogroups are written in the directory 'filtered_orthogroups'