diff test-data/orthogroups_tool.output @ 0:d33ad52f59bc draft default tip

planemo upload for repository htpps://github.com/abims-sbr/adaptearch commit 3c7982d775b6f3b472f6514d791edcb43cd258a1-dirty

--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/orthogroups_tool.output	Fri Feb 01 10:25:10 2019 -0500
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+
+-This script works on the 'Orthogroups' file output of Orthofinder to split each orthogroup in a single fasta file.
+-It also gets rid of orthogroups with less sequences than the number specified by the user.
+  Building hashTable IDs/sequences ...
+
+  Reading Orthogroups.txt and writing orthogroups to separated files...
+    (Dropping orthogroups of less than 2 loci.)
+
+  Summary before paralogous filtering : 
+
+        2 sps  3 sps  4 sps
+2 seqs      1      0      0
+3 seqs      1      3      0
+5 seqs      0      0      1
+8 seqs      0      1      0
+
+  Summary after paralogous filtering : 
+
+        2 sps  3 sps  4 sps
+2 seqs      2      0      0
+3 seqs      0      4      0
+4 seqs      0      0      1
+
+7 filtered orthogroups have been written in separated files
+  
+Filtered orthogroups are written in the directory 'filtered_orthogroups'
+  
+Full orthogroups files are written in the directory 'orthogroups_withParalogs'
+