view test-data/pogs.output @ 0:7bee3426a442 draft default tip

planemo upload for repository https://github.com/abims-sbr/adaptsearch commit 3c7982d775b6f3b472f6514d791edcb43cd258a1-dirty

*** pogs.py ***

Building of orthogroups based on pairs of genes obtained by pairwise comparisons between pairs of species.
Genes are gathered in orthogroups based on the principle of transitivity between genes pairs.

Parsing input files ...
Creating Orthogroups ...

    Summary before paralogous filtering : 

         2 sps  3 sps  4 sps
2 seqs    1394      0      0
3 seqs       0    163      0
4 seqs       0     26     33
5 seqs       0      3     17
6 seqs       0      0     17
7 seqs       0      0      7
8 seqs       0      0      2
11 seqs      0      0      1
13 seqs      0      0      1 

Writing orthogroups with paralogs files ...

Filtering paralogous sequences and writing final orthogroups files ...
    (Dropping Orthogroups with less than 3 species)

    Summary after paralogous filtering : 

        3 sps  4 sps
3 seqs    192      0
4 seqs      0     78

270 orthogroups have been infered from 6 pairwise comparisons by RBH