Mercurial > repos > abossers > tophit_namefilter
diff TopHit_namefilter/TopHit_README @ 0:9f1fe290345e default tip
Migrated tool version 0.1.Alx from old tool shed archive to new tool shed repository
author | abossers |
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date | Tue, 07 Jun 2011 18:07:34 -0400 |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/TopHit_namefilter/TopHit_README Tue Jun 07 18:07:34 2011 -0400 @@ -0,0 +1,47 @@ +# Created May 2011 +# +# Alex Bossers +# Central Veterinary Institute +# Wageningen University and Research centre +# Lelystad, The Netherlands +# +# Comments/improvements/bugs: Alex (dot) Bossers (at) wur (dot) nl + + +# WHAT IT DOES +TopHit_namefilter is a SIMPLE filter to keep just the TOPHIT / first [N] occurrence(s) of some +identifier. This is useful for keeping only the first N tophits of for instance BLAST when +multiple hits were returned (and you don't want to rerun the BLAST analysis). Of course it is NOT +restricted to BLAST and can basically filter ANY tabular data for uniqueness. + +Please be aware that NO additional filtering or checking is done on for instance E values of BLAST hits. +Tophit = FIRST hit...not necessarily the best.. If multiple hits are selected to be returned +they will NOT be sorted (see below example of a number of 2 hits occurring somewhere else in the +input and therefore in the output file). + + +# REQUIREMENTS +Perl +Galaxy :) + + +# SETUP +Just unpack the tool xml and perl script somewhere appropriate and plug the tool in the tool_config.xml +of your galaxy instance. Refresh the tools or restart the galaxy server. + + +# LICENSE +Copyright (c) 2011 Central Veterinary Institute of Wageningen UR, Lelystad, The Netherlands. + +This program is free software; you can redistribute it and/or modify +it under the terms of the GNU General Public License as published by +the Free Software Foundation; either version 3 of the License, or +(at your option) any later version. + +When distributing the tools please include this original reference. + +Use this tool at your own risk. Even though we tried to build tools and wrappers that free of errors, +check your output since it might be erroneous. We will not be relyable to any failure this may have caused. + +If you like these scripts, please acknowledge our work. +