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1 <?xml version="1.0"?>
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2 <tool_dependency>
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3 <package name="augustus" version="3.1">
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4 <repository changeset_revision="24009970003a" name="package_augustus_3_1" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" />
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5 </package>
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6 <package name="blast+" version="2.2.31">
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7 <repository changeset_revision="16e1254ed634" name="package_blast_plus_2_2_31" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" />
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8 </package>
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9 <package name="hmmer" version="3.1b2">
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10 <repository changeset_revision="040ca41b61c1" name="package_hmmer_3_1b2" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" />
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11 </package>
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12 <package name="python" version="3.4">
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13 <repository changeset_revision="aca5076020ea" name="package_python_3_4" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" />
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14 </package>
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15 <package name="busco" version="1.1b1">
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16 <install version="1.0">
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17 <actions>
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18
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19 <action sha256sum="19e6e392185979571a7e5fb328ecdd43f91c10df0ccbedf4a355e26d9cc7153c" type="download_by_url">http://busco.ezlab.org/files/BUSCO_v1.1b1.tar.gz</action>
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20
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21 <action rename_to="BUSCO.py" type="move_file">
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22 <source>BUSCO_v1.1b1.py</source>
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23 <destination>$INSTALL_DIR</destination>
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24 </action>
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25
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26 <action type="shell_command">mkdir $INSTALL_DIR/data</action>
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27
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28 <action type="change_directory">..</action>
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29
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30 <action sha256sum="b4fc2dbe18453b1f77b7f16619934363c219fd60493f18bcf3e2a353ac1eb048" type="download_by_url">http://busco.ezlab.org/files/arthropoda_buscos.tar.gz</action>
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31
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32 <action type="move_directory_files">
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33 <source_directory>arthropoda</source_directory>
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34 <destination_directory>$INSTALL_DIR/data/arthropoda</destination_directory>
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35 </action>
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36
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37 <action sha256sum="bd416a2711364756210447cf79300ea42cced84609d0e4c7690a72140bccea3e" type="download_by_url">http://busco.ezlab.org/files/vertebrata_buscos.tar.gz</action>
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38
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39 <action type="move_directory_files">
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40 <source_directory>vertebrata</source_directory>
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41 <destination_directory>$INSTALL_DIR/data/vertebrata</destination_directory>
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42 </action>
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43
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44 <action sha256sum="cd084b0e335b64316a8357c0953b4509fc2348e0c292c1c6b15b6e69dec50045" type="download_by_url">http://busco.ezlab.org/files/fungi_buscos.tar.gz</action>
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45
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46 <action type="move_directory_files">
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47 <source_directory>fungi</source_directory>
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48 <destination_directory>$INSTALL_DIR/data/fungi</destination_directory>
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49 </action>
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50
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51 <action sha256sum="b3d0a588c1459f38d3fc574a604c429dcd4d6204fa1a7bf09a9b01d785a889bf" type="download_by_url">http://busco.ezlab.org/files/bacteria_buscos.tar.gz</action>
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52
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53 <action type="move_directory_files">
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54 <source_directory>bacteria</source_directory>
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55 <destination_directory>$INSTALL_DIR/data/bacteria</destination_directory>
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56 </action>
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57
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58 <action sha256sum="1613fb6a0e7bec8d7d4aefc220e0e6272dfacc5753e016c29d7e3c3631fc07fd" type="download_by_url">http://busco.ezlab.org/files/metazoa_buscos.tar.gz</action>
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59
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60 <action type="move_directory_files">
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61 <source_directory>metazoa</source_directory>
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62 <destination_directory>$INSTALL_DIR/data/metazoa</destination_directory>
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63 </action>
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64
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65 <action sha256sum="564f019b07ebeb8adfae43d2c9ef2b0235cc464c73c21aef1d5c22061ede4f5d" type="download_by_url">http://busco.ezlab.org/files/eukaryota_buscos.tar.gz</action>
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66
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67 <action type="move_directory_files">
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68 <source_directory>eukaryota</source_directory>
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69 <destination_directory>$INSTALL_DIR/data/eukaryota</destination_directory>
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70 </action>
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71
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72 <action type="set_environment">
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73 <environment_variable action="set_to" name="BUSCO_ROOT_PATH">$INSTALL_DIR</environment_variable>
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74 <environment_variable action="set_to" name="BUSCO_DATA_PATH">$INSTALL_DIR/data</environment_variable>
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75 </action>
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76 </actions>
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77 </install>
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78 </package>
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79 </tool_dependency>
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