Mercurial > repos > agordon > datamash_wrapper
comparison datamash-ops.xml @ 6:22080cbb0e2a
datamash: improve XML tool
1. String fix suggested by Bjoern Gruening.
2. Added input validator to group text box
3. Added minimum "1" operation.
| author | Assaf Gordon <agordon@wi.mit.edu> |
|---|---|
| date | Sat, 22 Nov 2014 20:37:38 -0500 |
| parents | f33abb72cbe3 |
| children |
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| 5:f33abb72cbe3 | 6:22080cbb0e2a |
|---|---|
| 10 $header_in | 10 $header_in |
| 11 $header_out | 11 $header_out |
| 12 $need_sort | 12 $need_sort |
| 13 $print_full_line | 13 $print_full_line |
| 14 $ignore_case | 14 $ignore_case |
| 15 #if str($grouping)>0 | 15 #if str($grouping).strip() |
| 16 --group '$grouping' | 16 --group '$grouping' |
| 17 #end if | 17 #end if |
| 18 #for $oper in $operations | 18 #for $oper in $operations |
| 19 ${oper.op_name} | 19 ${oper.op_name} |
| 20 ${oper.op_column} | 20 ${oper.op_column} |
| 22 < $in_file > $out_file | 22 < $in_file > $out_file |
| 23 </command> | 23 </command> |
| 24 <inputs> | 24 <inputs> |
| 25 <param format="tabular" name="in_file" type="data" label="Select Input Data" help=""/> | 25 <param format="tabular" name="in_file" type="data" label="Select Input Data" help=""/> |
| 26 | 26 |
| 27 <param name="grouping" label="Group by fields" type="text" help="Example: 1,4 - To group by the first and fourth fields. Leave empty to perform operation on entire file as one group."/> | 27 <param name="grouping" label="Group by fields" type="text" help="Example: 1,4 - To group by the first and fourth fields. Leave empty to perform operation on entire file as one group."> |
| 28 <validator type="regex" message="invalid fields value">^[0-9, ]*$</validator> | |
| 29 </param> | |
| 28 | 30 |
| 29 <param name="header_in" type="boolean" truevalue="--header-in" falsevalue="" | 31 <param name="header_in" type="boolean" truevalue="--header-in" falsevalue="" |
| 30 label="Input file has a header line" help="Mark this if the input file's first line is a header line" /> | 32 label="Input file has a header line" help="Mark this if the input file's first line is a header line" /> |
| 31 | 33 |
| 32 <param name="header_out" type="boolean" truevalue="--header-out" falsevalue="" | 34 <param name="header_out" type="boolean" truevalue="--header-out" falsevalue="" |
| 39 label="Print all fields from input file" help="If set, all input fields will be printed. If unset, only fields used for grouping will be printed." /> | 41 label="Print all fields from input file" help="If set, all input fields will be printed. If unset, only fields used for grouping will be printed." /> |
| 40 | 42 |
| 41 <param name="ignore_case" type="boolean" truevalue="--ignore-case" falsevalue="" | 43 <param name="ignore_case" type="boolean" truevalue="--ignore-case" falsevalue="" |
| 42 label="Ignore case when grouping" help="If set, upper/lowercase differences will be ignored when grouping fields." /> | 44 label="Ignore case when grouping" help="If set, upper/lowercase differences will be ignored when grouping fields." /> |
| 43 | 45 |
| 44 <repeat name="operations" title="Operation to perform on each group"> | 46 <repeat name="operations" title="Operation to perform on each group" min="1" default="1"> |
| 45 <param name="op_name" type="select" label="Type"> | 47 <param name="op_name" type="select" label="Type"> |
| 46 <option value="count">count</option> | 48 <option value="count">count</option> |
| 47 <option value="sum">sum</option> | 49 <option value="sum">sum</option> |
| 48 <option value="min">minimum</option> | 50 <option value="min">minimum</option> |
| 49 <option value="max">maximum</option> | 51 <option value="max">maximum</option> |