Mercurial > repos > agordon > datamash_wrapper
changeset 8:b8e69214bfc6
add 'datamash-transpose' tool
| author | Assaf Gordon <agordon@wi.mit.edu> |
|---|---|
| date | Sat, 22 Nov 2014 20:40:03 -0500 |
| parents | 48bbe512639e |
| children | fecc95defba2 |
| files | datamash-transpose.xml test-data/datamash_transpose_input.txt test-data/datamash_transpose_output.txt |
| diffstat | 3 files changed, 71 insertions(+), 0 deletions(-) [+] |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/datamash-transpose.xml Sat Nov 22 20:40:03 2014 -0500 @@ -0,0 +1,64 @@ +<tool id="DatamashTranspose" name="Transpose" version="1.0.6"> + <description>rows/columns in a tabular file</description> + + <requirements> + <requirement type="package" version="1.0.6">datamash</requirement> + </requirements> + + <command> + datamash -W transpose < $in_file > $out_file + </command> + <inputs> + <param format="tabular" name="in_file" type="data" label="Select Input Data" help=""/> + </inputs> + <outputs> + <data format="tabular" name="out_file" /> + </outputs> + <tests> + <test> + <param name="in_file" value="datamash_transpose_input.txt" /> + <output name="out_file" file="datamash_transpose_output.txt" /> + </test> + </tests> +<help> + +.. class:: infomark + +**TIP:** Input data must be TAB delimited. If the desired dataset does not appear in the input list, use *Text Manipulation->Convert* to convert it to **Tabular** type. + +----- + +**Syntax** + +This tools transposes (swaps) rows/columns in a tabular input file. + +----- + +**Example** + +Input file:: + + Genes NOX1 DcP HH + Sample A1 A2 B3 + Counts 514 542 490 + +Output file:: + + Genes Sample Counts + NOX1 A1 514 + DcP A2 542 + HH B3 490 + + +----- + +**GNU Datamash** is a Free and Open Source Software, see more details on the Datamash_ Website. + +**GNU Datamash** is also available as a command-line program, see http://www.gnu.org/software/datamash/download/ . + +For more details about supported statistical operations, see Datamash_ website. + +.. _Datamash: http://www.gnu.org/software/datamash/ + +</help> +</tool>