Mercurial > repos > ahosny > cnvsim
comparison setup-linux.sh @ 14:eaf4f14d7cf0 draft
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author | ahosny |
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date | Wed, 07 Sep 2016 09:32:46 -0400 |
parents | 382e447d750c |
children |
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13:e0f5a71e94ed | 14:eaf4f14d7cf0 |
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10 sudo apt-get install wget | 10 sudo apt-get install wget |
11 | 11 |
12 # Install pysam library | 12 # Install pysam library |
13 sudo pip install pysam | 13 sudo pip install pysam |
14 | 14 |
15 # Install numpy library | |
16 sudo pip install numpy | |
17 | |
18 # Install Bio Python | 15 # Install Bio Python |
19 sudo pip install biopython | 16 sudo pip install biopython |
20 | 17 |
21 # install bedtools | 18 # install bedtools |
22 sudo apt-get install bedtools | 19 sudo apt-get install bedtools |