Mercurial > repos > alenail > chipsequtil

comparison chipsequtil/pieplot_macs/pieplots_macs.py @ 29:5c1e5d771216 draft

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author alenail
date Thu, 14 Apr 2016 09:35:53 -0400
parents 63dace20719b
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28:aec507b81d10 29:5c1e5d771216
15 ''' 15 '''
16 16
17 __author__='Renan Escalante' 17 __author__='Renan Escalante'
18 __email__='renanec@mit.edu' 18 __email__='renanec@mit.edu'
19 19
20 import pandas as pd
20 import matplotlib 21 import matplotlib
21 matplotlib.use('pdf') 22 matplotlib.use('pdf')
22 from matplotlib import pyplot as plt 23 from matplotlib import pyplot as plt
23 matplotlib.rcParams['pdf.fonttype']=42 24 matplotlib.rcParams['pdf.fonttype']=42
24 matplotlib.rcParams['font.size']=14 25 matplotlib.rcParams['font.size']=14
25 import sys 26 import sys
26 from argparse import ArgumentParser 27 from argparse import ArgumentParser
27 import pandas as pd
28 28
29 def map_peaks(gene,peak,outfile,macsFlag): 29 def map_peaks(gene,peak,outfile,macsFlag):
30 genefile = open(gene, 'r') 30 genefile = open(gene, 'r')
31 peakfile = open(peak, 'r') 31 peakfile = open(peak, 'r')
32 32