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comparison chipsequtil/pieplot_macs/pieplots_macs.xml @ 25:a5df36602f21 draft

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author alenail
date Wed, 13 Apr 2016 17:52:26 -0400
parents dd504ac7bf6d
children 8cdddb76c44f
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24:d9e6a1c66e76 25:a5df36602f21
6 <requirements> 6 <requirements>
7 <requirement type="package" version="1.2.1">matplotlib</requirement> 7 <requirement type="package" version="1.2.1">matplotlib</requirement>
8 <requirement type="package">pandas</requirement> 8 <requirement type="package">pandas</requirement>
9 </requirements> 9 </requirements>
10 <command interpreter="python"> 10 <command interpreter="python">
11 pieplots_macs.py genefile $genefilepeakfile $peakfile $MACSoutfile $out 11 pieplots_macs.py --genefile $genefile --peakfile $peakfile $MACS --outfile $out
12 </command> 12 </command>
13 <inputs> 13 <inputs>
14 <param name="genefile" type="data" label="Gene file (map_peaks_to_genes)" help="" optional="false" /> 14 <param name="genefile" type="data" label="Gene file (map_peaks_to_genes)" help="" optional="false" />
15 <param name="peakfile" type="data" label="Peaks file (narrowpeaks)" help="" optional="false" /> 15 <param name="peakfile" type="data" label="Peaks file (narrowpeaks)" help="" optional="false" />
16 <param name="MACS" checked="false" label="Set this value if you have MACS peaks" type="boolean" truevalue="--MACS" falsevalue="" help="" /> 16 <param name="MACS" checked="false" label="Set this value if you have MACS peaks" type="boolean" truevalue="--MACS" falsevalue="" help="" />