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comparison chipsequtil/pieplot_macs/pieplots_macs.xml @ 23:dd504ac7bf6d draft

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author alenail
date Wed, 13 Apr 2016 17:41:46 -0400
parents 63dace20719b
children a5df36602f21
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22:63dace20719b 23:dd504ac7bf6d
9 </requirements> 9 </requirements>
10 <command interpreter="python"> 10 <command interpreter="python">
11 pieplots_macs.py genefile $genefilepeakfile $peakfile $MACSoutfile $out 11 pieplots_macs.py genefile $genefilepeakfile $peakfile $MACSoutfile $out
12 </command> 12 </command>
13 <inputs> 13 <inputs>
14 <param name="genefile" type="data" label="genefile file" help="" optional="false" /> 14 <param name="genefile" type="data" label="Gene file (map_peaks_to_genes)" help="" optional="false" />
15 <param name="peakfile" type="data" label="peakfile xRef file" help="" optional="false" /> 15 <param name="peakfile" type="data" label="Peaks file (narrowpeaks)" help="" optional="false" />
16 <param name="MACS" checked="false" label="Set this value if you have MACS peaks" type="boolean" truevalue="--MACS" falsevalue="" help="" /> 16 <param name="MACS" checked="false" label="Set this value if you have MACS peaks" type="boolean" truevalue="--MACS" falsevalue="" help="" />
17 </inputs> 17 </inputs>
18 <outputs> 18 <outputs>
19 <data name="out" format="pdf" hidden="false" /> 19 <data name="out" format="pdf" hidden="false" />
20 </outputs> 20 </outputs>