Mercurial > repos > alenail > chipsequtil

diff chipsequtil/map_to_known_genes.xml @ 4:0eaa8225a09a draft

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author alenail
date Mon, 04 Apr 2016 14:52:14 -0400
parents 4f66143b385a
children 124231ed2402
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--- a/chipsequtil/map_to_known_genes.xml	Wed Mar 30 15:22:19 2016 -0400
+++ b/chipsequtil/map_to_known_genes.xml	Mon Apr 04 14:52:14 2016 -0400
@@ -31,12 +31,11 @@
     <param name="tss" checked="true" label="calculate downstream window from transcription start site instead of transcription end site" type="boolean" truevalue="--tss" falsevalue="" help="" />
 
     <param name="peaks_fmt" type="select" label="Peaks Format" help="Format of peaks input file" optional="false">
-        <option value="auto">auto</option>
         <option value="MACS">MACS</option>
         <option selected="true" value="BED">BED</option>
     </param>
 
-    <param name="detail" checked="false" label="Add extra fields to output" type="boolean" truevalue="--detail" falsevalue="" help="" />
+    <param name="detail" checked="true" label="Add extra fields to output" type="boolean" truevalue="--detail" falsevalue="" help="" />
     <param name="intergenic" checked="false" label="Write intergenic peaks to the gene file as well with None as gene ID" type="boolean" truevalue="--intergenic" falsevalue="" help="" />
   </inputs>
   <outputs>