diff chipsequtil/map_to_known_genes.xml @ 6:124231ed2402 draft

Uploaded

--- a/chipsequtil/map_to_known_genes.xml	Mon Apr 04 14:52:25 2016 -0400
+++ b/chipsequtil/map_to_known_genes.xml	Mon Apr 04 14:56:51 2016 -0400
@@ -28,14 +28,14 @@
     <param name="upst_win" type="integer" label="Upstream Window" help="Window width in base pairs to consider promoter region [default: %default]" optional="false" value="5500" />
     <param name="dnst_win" type="integer" label="Downstream Window" help="Window width in base pairs to consider downstream region [default: %default]" optional="false" value="2500" />
 
-    <param name="tss" checked="true" label="calculate downstream window from transcription start site instead of transcription end site" type="boolean" truevalue="--tss" falsevalue="" help="" />
+    <param name="tss" checked="true" label="Calculate downstream window from transcription start site instead of transcription end site" type="boolean" truevalue="--tss" falsevalue="" help="" />
 
     <param name="peaks_fmt" type="select" label="Peaks Format" help="Format of peaks input file" optional="false">
         <option value="MACS">MACS</option>
         <option selected="true" value="BED">BED</option>
     </param>
 
-    <param name="detail" checked="true" label="Add extra fields to output" type="boolean" truevalue="--detail" falsevalue="" help="" />
+    <param name="detail" checked="true" label="Append the following fields to each row: peak loc, dist from feature, map type, map subtype" type="boolean" truevalue="--detail" falsevalue="" help="" />
     <param name="intergenic" checked="false" label="Write intergenic peaks to the gene file as well with None as gene ID" type="boolean" truevalue="--intergenic" falsevalue="" help="" />
   </inputs>
   <outputs>