Mercurial > repos > alenail > chipsequtil
diff chipsequtil/pieplot_macs/pieplots_macs.xml @ 22:63dace20719b draft
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author | alenail |
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date | Wed, 13 Apr 2016 17:36:07 -0400 |
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children | dd504ac7bf6d |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/chipsequtil/pieplot_macs/pieplots_macs.xml Wed Apr 13 17:36:07 2016 -0400 @@ -0,0 +1,22 @@ +<tool id="pieplots_macs" name="Pieplots MACS" version="0.1"> + <description> + Peaks are assigned to the closest gene and then categorized according to their location at different genomic regions (promoter, intron, exon, or after the gene). Sites >10kb away from any gene are considered intergenic. + </description> + <parallelism method="basic"></parallelism> + <requirements> + <requirement type="package" version="1.2.1">matplotlib</requirement> + <requirement type="package">pandas</requirement> + </requirements> + <command interpreter="python"> + pieplots_macs.py genefile $genefilepeakfile $peakfile $MACSoutfile $out + </command> + <inputs> + <param name="genefile" type="data" label="genefile file" help="" optional="false" /> + <param name="peakfile" type="data" label="peakfile xRef file" help="" optional="false" /> + <param name="MACS" checked="false" label="Set this value if you have MACS peaks" type="boolean" truevalue="--MACS" falsevalue="" help="" /> + </inputs> + <outputs> + <data name="out" format="pdf" hidden="false" /> + </outputs> + <help></help> +</tool>