# HG changeset patch
# User alenail
# Date 1459799952 14400
# Node ID 425c48c48dde9cbf009b8d513e7dff1245daddbd
# Parent  89e9a828de511f1cbfa3d22dfe69774ff94000ae
Uploaded

diff -r 89e9a828de51 -r 425c48c48dde chipsequtil/._map_to_known_genes.py
Binary file chipsequtil/._map_to_known_genes.py has changed
diff -r 89e9a828de51 -r 425c48c48dde chipsequtil/._map_to_known_genes.xml
Binary file chipsequtil/._map_to_known_genes.xml has changed
diff -r 89e9a828de51 -r 425c48c48dde chipsequtil/map_to_known_genes.py
--- a/chipsequtil/map_to_known_genes.py	Mon Apr 04 15:41:48 2016 -0400
+++ b/chipsequtil/map_to_known_genes.py	Mon Apr 04 15:59:12 2016 -0400
@@ -44,14 +44,15 @@
 
     return gene_ref
 
+
 def parse_gene_ref_line(l) :
     l = map(parse_number, l) # coerce to numbers where possible
     l[9] = map(parse_number, l[9].split(',')) # turn 'x,x,x,...' into list
     l[10] = map(parse_number, l[10].split(','))
     return l
 
-if __name__ == '__main__' :
 
+def main():
     opts, args = parser.parse_args(sys.argv[1:])
 
     if len(args) < 3 :
@@ -216,6 +217,7 @@
     if peak_output != sys.stdout:
         print "arrived here."
         peak_output.close()
+        print "arrived here2."
 
     #if opts.stats_output != sys.stderr :
     #    opts.stats_output = open(opts.stats_output,'w')
@@ -225,3 +227,7 @@
 
     #if opts.stats_output != sys.stderr :
     #    opts.stats_output.close()
+
+
+if __name__ == '__main__' :
+    main()