# HG changeset patch
# User alenail
# Date 1459802512 14400
# Node ID 435adb6000f1d0c4fd6216fb3e76198337779142
# Parent  c5c452f9c2370879cfffd88a45fcb7a06ae93db2
Uploaded

diff -r c5c452f9c237 -r 435adb6000f1 chipsequtil/._map_to_known_genes.py
Binary file chipsequtil/._map_to_known_genes.py has changed
diff -r c5c452f9c237 -r 435adb6000f1 chipsequtil/._map_to_known_genes.xml
Binary file chipsequtil/._map_to_known_genes.xml has changed
diff -r c5c452f9c237 -r 435adb6000f1 chipsequtil/map_to_known_genes.py
--- a/chipsequtil/map_to_known_genes.py	Mon Apr 04 16:33:47 2016 -0400
+++ b/chipsequtil/map_to_known_genes.py	Mon Apr 04 16:41:52 2016 -0400
@@ -200,7 +200,6 @@
                 if opts.symbol_xref :
                     out_d['geneSymbol'] = symbol_xref_map[gene['name']]['geneSymbol']
                 peaks_writer.writerow(out_d)
-                print "wrote a row."
                 mapped = True
 
                 # reset map_type
@@ -215,9 +214,7 @@
             map_stats['intergenic'] += 1
 
     if peak_output != sys.stdout:
-        print "arrived here."
         peak_output.close()
-        print "arrived here2."
 
     #if opts.stats_output != sys.stderr :
     #    opts.stats_output = open(opts.stats_output,'w')